AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0936180


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0936180 MtrunA17_Chr6g0451991 92.405 316 21 1 1 316 1 313 0.0 588
Msa0936180 MtrunA17_Chr4g0059601 39.172 314 137 10 14 289 22 319 7.79e-51 171
Msa0936180 MtrunA17_Chr2g0325921 45.283 53 23 1 243 289 9 61 6.06e-11 63.5
Msa0936180 MtrunA17_Chr4g0030181 45.283 53 23 1 243 289 9 61 8.62e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0936180 AT5G62910.1 37.821 312 145 9 5 290 11 299 3.05e-41 146
Msa0936180 AT5G62910.2 37.821 312 145 9 5 290 11 299 3.05e-41 146
Msa0936180 AT3G48070.1 40.206 291 139 11 14 290 22 291 1.64e-40 144
Msa0936180 AT3G48070.2 40.206 291 139 11 14 290 22 291 9.43e-40 143
Msa0936180 AT3G48070.3 54.167 96 34 1 194 289 156 241 4.23e-30 116
Msa0936180 AT1G74870.1 29.749 279 152 8 13 288 20 257 9.59e-20 87.8
Msa0936180 AT2G28540.2 45.283 53 23 1 243 289 9 61 9.06e-11 63.5
Msa0936180 AT5G60170.2 45.283 53 23 1 243 289 9 61 9.63e-11 63.2
Msa0936180 AT5G60170.1 45.283 53 23 1 243 289 9 61 9.71e-11 63.2

Find 82 sgRNAs with CRISPR-Local

Find 153 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAATGGAGTTGTTTATTA+TGG 0.175343 6_3:+6821334 None:intergenic
TATTTCCTTCCTTCATTCAA+TGG 0.307492 6_3:-6823056 Msa0936180:exon
AGGGTTTACCCTCTTCTTCT+TGG 0.319817 6_3:+6823000 None:intergenic
AAGAACAAAGAAGGATAAAG+AGG 0.351121 6_3:+6823090 None:intergenic
TTCCTTCATTCAATGGCTCC+TGG 0.362277 6_3:-6823049 Msa0936180:exon
CTCCTGATTTCCTTGTATGA+TGG 0.367192 6_3:+6821404 None:intergenic
TGCATCCAAGCGAATGATTC+CGG 0.369607 6_3:-6821359 Msa0936180:CDS
AAACTATATGATCATGTAGA+TGG 0.388857 6_3:-6820750 Msa0936180:CDS
TAATTAATCGTATGCTCTAT+AGG 0.391969 6_3:+6821137 None:intergenic
AAGACGGATGCCTTGATGAT+TGG 0.392511 6_3:-6821220 Msa0936180:CDS
AACCATCATACAAGGAAATC+AGG 0.402516 6_3:-6821406 Msa0936180:CDS
CGAGGCAGATGGACGATGTC+CGG 0.409531 6_3:-6820781 Msa0936180:CDS
AGACGGATGCCTTGATGATT+GGG 0.410627 6_3:-6821219 Msa0936180:CDS
GGATTTAGACTTGACAGATT+CGG 0.412182 6_3:-6820862 Msa0936180:CDS
GGATGCGATGTTGACTCAAC+TGG 0.420478 6_3:-6821479 Msa0936180:CDS
GGAGTTGTTTATTATGGATC+CGG 0.422445 6_3:+6821340 None:intergenic
CTCATCAAAGAGCAACATAA+GGG 0.424283 6_3:+6820555 None:intergenic
ACTCTCAGTTAAATTCAAAC+TGG 0.432784 6_3:-6820962 Msa0936180:CDS
GGACTTAACGATGGACTTAA+CGG 0.443841 6_3:-6821093 Msa0936180:CDS
CTCTTCTTCTTGGAGGAGAA+AGG 0.450083 6_3:+6823010 None:intergenic
GTGATTATAACTACTTTGAA+TGG 0.452304 6_3:+6821319 None:intergenic
TACAAGGAAATCAGGAGAAA+AGG 0.453486 6_3:-6821398 Msa0936180:CDS
CAGTCATGCCGTATGAGTAC+AGG 0.456682 6_3:-6820684 Msa0936180:CDS
TCTAAATCCTCGTAACAGAT+AGG 0.467714 6_3:+6820876 None:intergenic
ACTCATCAAAGAGCAACATA+AGG 0.467854 6_3:+6820554 None:intergenic
GGAGAAAGGAGGGTCAGAAA+TGG 0.470846 6_3:+6823024 None:intergenic
GTTTACCCTCTTCTTCTTGG+AGG 0.476527 6_3:+6823003 None:intergenic
ACTTAACGGTGAAAGAGTTC+AGG 0.480803 6_3:-6821079 Msa0936180:CDS
TTCCTCACTTAGACTTCCTA+AGG 0.483318 6_3:+6821241 None:intergenic
AAAGAAGGATAAAGAGGGAG+TGG 0.491378 6_3:+6823096 None:intergenic
CTCGCAATGTGCTTAGATGA+TGG 0.492888 6_3:+6821440 None:intergenic
CCGTATGAGTACAGGGTGCT+AGG 0.509540 6_3:-6820676 Msa0936180:exon
TGGATCCGGAATCATTCGCT+TGG 0.519416 6_3:+6821354 None:intergenic
GAATTTCTTCCTTGTTCGTG+TGG 0.522525 6_3:-6820840 Msa0936180:CDS
TGTTGATTCAGAAGCAGCTA+AGG 0.529153 6_3:-6821114 Msa0936180:CDS
GAGGCAGATGGACGATGTCC+GGG 0.536233 6_3:-6820780 Msa0936180:CDS
ACTGTTTGCGTTTAAAGCAT+CGG 0.537816 6_3:+6821187 None:intergenic
TATAGGAGACTCTGAAACCA+TGG 0.540448 6_3:+6821154 None:intergenic
TTATGCGGCTTTGAGAGGTC+GGG 0.543577 6_3:+6820984 None:intergenic
TGCGTTTAAAGCATCGGCAA+CGG 0.544753 6_3:+6821193 None:intergenic
AATCAGGAGAAAAGGAAGAG+AGG 0.545531 6_3:-6821390 Msa0936180:CDS
GAGAAAGAGAAGAACAAAGA+AGG 0.547326 6_3:+6823081 None:intergenic
GTTATGCGGCTTTGAGAGGT+CGG 0.547395 6_3:+6820983 None:intergenic
AGGAGAAAAGGAAGAGAGGA+TGG 0.550600 6_3:-6821386 Msa0936180:CDS
AGAACAAAGAAGGATAAAGA+GGG 0.554653 6_3:+6823091 None:intergenic
AACCAGGAGCCATTGAATGA+AGG 0.565572 6_3:+6823047 None:intergenic
ACAAAATTGTACCTTGGTCA+TGG 0.567148 6_3:-6820929 Msa0936180:CDS
ATCTAAGCACATTGCGAGCG+AGG 0.569786 6_3:-6821435 Msa0936180:CDS
TTCTTCTTGGAGGAGAAAGG+AGG 0.571919 6_3:+6823013 None:intergenic
GGAGGGTCAGAAATGGAACC+AGG 0.572536 6_3:+6823031 None:intergenic
CTTTCTCCTCCAAGAAGAAG+AGG 0.573316 6_3:-6823009 Msa0936180:CDS
CAACGGCCTCCCAATCATCA+AGG 0.573927 6_3:+6821210 None:intergenic
GAGAGTTATGCGGCTTTGAG+AGG 0.580285 6_3:+6820979 None:intergenic
CAGTTAAATTCAAACTGGCA+TGG 0.583633 6_3:-6820957 Msa0936180:CDS
CCTAGCACCCTGTACTCATA+CGG 0.584262 6_3:+6820676 None:intergenic
AAACAGTAACGAGCATTCCA+TGG 0.585443 6_3:-6821171 Msa0936180:CDS
AGCAAATTAAGCTTGACGTT+AGG 0.588067 6_3:-6822532 Msa0936180:CDS
GTTATAATCACGATGAGTCA+AGG 0.589115 6_3:-6821307 Msa0936180:CDS
AGATGAAATCCACACGAACA+AGG 0.589677 6_3:+6820831 None:intergenic
AATCACGATGAGTCAAGGAA+TGG 0.591635 6_3:-6821302 Msa0936180:CDS
GTAACCACAAAATTGTACCT+TGG 0.603235 6_3:-6820935 Msa0936180:CDS
GGAGAATCAACCATCATACA+AGG 0.605659 6_3:-6821414 Msa0936180:CDS
CGCGAACAATGGCTTTCTAG+AGG 0.607394 6_3:-6822509 Msa0936180:intron
GCGATGTTGACTCAACTGGA+AGG 0.610065 6_3:-6821475 Msa0936180:CDS
TCTTCTTGGAGGAGAAAGGA+GGG 0.611617 6_3:+6823014 None:intergenic
AGTCATGCCGTATGAGTACA+GGG 0.616497 6_3:-6820683 Msa0936180:CDS
TCAAAGAGCAACATAAGGGG+AGG 0.619341 6_3:+6820559 None:intergenic
CAAAGAGCAACATAAGGGGA+GGG 0.619416 6_3:+6820560 None:intergenic
AGGAGCCATTGAATGAAGGA+AGG 0.621016 6_3:+6823051 None:intergenic
ATTATTGTTCGCCATGACCA+AGG 0.622571 6_3:+6820918 None:intergenic
TTTCTCCTCCAAGAAGAAGA+GGG 0.628934 6_3:-6823008 Msa0936180:intron
GAATTTAACTGAGAGTTATG+CGG 0.630591 6_3:+6820969 None:intergenic
GGAAGTCTAAGTGAGGAAGA+CGG 0.638004 6_3:-6821236 Msa0936180:CDS
GAGAGGTCGGGCAAACACCT+CGG 0.641706 6_3:+6820996 None:intergenic
TTCCTTAGGAAGTCTAAGTG+AGG 0.644046 6_3:-6821243 Msa0936180:CDS
CGGATGCCTTGATGATTGGG+AGG 0.644265 6_3:-6821216 Msa0936180:CDS
AGCAGCTAAGGACTTAACGA+TGG 0.647033 6_3:-6821102 Msa0936180:CDS
CCGATGACACTCTTCGTCCG+AGG 0.652440 6_3:-6821013 Msa0936180:CDS
TCATCAAAGAGCAACATAAG+GGG 0.656926 6_3:+6820556 None:intergenic
TAACAGATAGGACATTGACT+AGG 0.694474 6_3:+6820888 None:intergenic
CGATGTTGACTCAACTGGAA+GGG 0.705315 6_3:-6821474 Msa0936180:CDS
TCAATGTCCTATCTGTTACG+AGG 0.710111 6_3:-6820883 Msa0936180:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTAAAAAAATTCAAAGA+TGG - chr6_3:6822135-6822154 Msa0936180:intron 10.0%
!! ATAAAAATTAAAAAGGAGAA+GGG + chr6_3:6820764-6820783 None:intergenic 15.0%
!! AATAAAAATTAAAAAGGAGA+AGG + chr6_3:6820765-6820784 None:intergenic 15.0%
!! AAAAAGAAAAATCTTATCAT+TGG + chr6_3:6821330-6821349 None:intergenic 15.0%
!! TTAAAAAATATAATAGCGAA+TGG + chr6_3:6821496-6821515 None:intergenic 15.0%
!!! TTAAATATATTGTTTCTCAA+TGG - chr6_3:6822083-6822102 Msa0936180:intron 15.0%
!!! ATCAAATTTTTATAGCTCAA+GGG + chr6_3:6820820-6820839 None:intergenic 20.0%
!!! AATCAAATTTTTATAGCTCA+AGG + chr6_3:6820821-6820840 None:intergenic 20.0%
!!! AATCTTCATTTTTTATGTCA+TGG - chr6_3:6820986-6821005 Msa0936180:CDS 20.0%
!! AACATAATGAATGTCATAAA+AGG + chr6_3:6821060-6821079 None:intergenic 20.0%
!!! TTATGATCATCATTTTCATA+TGG - chr6_3:6821261-6821280 Msa0936180:CDS 20.0%
!!! TCATTCTGTTATTTATGTAA+GGG - chr6_3:6821390-6821409 Msa0936180:CDS 20.0%
!!! TTTTGTTTTTCAGTCAAAAA+GGG - chr6_3:6822242-6822261 Msa0936180:intron 20.0%
! AATGCAATGAAATGGAAAAT+GGG + chr6_3:6820901-6820920 None:intergenic 25.0%
! AAATGCAATGAAATGGAAAA+TGG + chr6_3:6820902-6820921 None:intergenic 25.0%
! CAAAACAAAATGCAATGAAA+TGG + chr6_3:6820909-6820928 None:intergenic 25.0%
!!! TTTTGTTTTGTTGAGTTCAA+AGG - chr6_3:6820919-6820938 Msa0936180:CDS 25.0%
!!! TTTGTTTTGTTGAGTTCAAA+GGG - chr6_3:6820920-6820939 Msa0936180:CDS 25.0%
!!! TTTCTATGTTTTGTTGTTCT+TGG - chr6_3:6820961-6820980 Msa0936180:CDS 25.0%
!!! ATGTCATGGTTTTATCATAA+AGG - chr6_3:6821000-6821019 Msa0936180:CDS 25.0%
!! TTCATTATGTTTTTCCTCTA+AGG - chr6_3:6821069-6821088 Msa0936180:CDS 25.0%
!!! TTGCTTTGTTTTTGATGTTT+TGG - chr6_3:6821108-6821127 Msa0936180:CDS 25.0%
!! TGGAAATTTTCATTATGTCA+TGG - chr6_3:6821128-6821147 Msa0936180:CDS 25.0%
!! TTTTCATTATGTCATGGTTT+TGG - chr6_3:6821134-6821153 Msa0936180:CDS 25.0%
!!! ATTGTGTTTTTTCAGACAAA+TGG - chr6_3:6821173-6821192 Msa0936180:CDS 25.0%
! TTCAAGATTCATGATTATGA+AGG + chr6_3:6821368-6821387 None:intergenic 25.0%
!! GTCATTCTGTTATTTATGTA+AGG - chr6_3:6821389-6821408 Msa0936180:CDS 25.0%
! TTATTTATGTAAGGGTTTAG+AGG - chr6_3:6821398-6821417 Msa0936180:CDS 25.0%
! CATTATCTACCAAAATGATT+AGG - chr6_3:6821539-6821558 Msa0936180:intron 25.0%
!!! TATCATTGATTCCGAATTTT+AGG - chr6_3:6821718-6821737 Msa0936180:intron 25.0%
!!! ATTCCGAATTTTAGGTTTTA+GGG - chr6_3:6821726-6821745 Msa0936180:intron 25.0%
! TTATACTGTTTATCCAAACA+AGG - chr6_3:6821959-6821978 Msa0936180:intron 25.0%
!! AAATCTTTTTCTCACTAGAT+GGG - chr6_3:6822001-6822020 Msa0936180:intron 25.0%
!!! CTTAAAAATCCTTTTGAAGT+CGG - chr6_3:6822180-6822199 Msa0936180:intron 25.0%
!!! CTTTTGTTTTTCAGTCAAAA+AGG - chr6_3:6822241-6822260 Msa0936180:intron 25.0%
! TTGAATGGAGTTGTTTATTA+TGG + chr6_3:6822411-6822430 None:intergenic 25.0%
! GTGATTATAACTACTTTGAA+TGG + chr6_3:6822426-6822445 None:intergenic 25.0%
! TAATTAATCGTATGCTCTAT+AGG + chr6_3:6822608-6822627 None:intergenic 25.0%
! AAACTATATGATCATGTAGA+TGG - chr6_3:6822992-6823011 Msa0936180:intron 25.0%
AGAACAAAGAAGGATAAAGA+GGG + chr6_3:6820654-6820673 None:intergenic 30.0%
AAGAACAAAGAAGGATAAAG+AGG + chr6_3:6820655-6820674 None:intergenic 30.0%
TATTTCCTTCCTTCATTCAA+TGG - chr6_3:6820686-6820705 Msa0936180:CDS 30.0%
AAGAAAAATTGCTTCCTTAG+AGG + chr6_3:6821086-6821105 None:intergenic 30.0%
TTATGAAGGCAAGATTATGA+AGG + chr6_3:6821354-6821373 None:intergenic 30.0%
TATAATAGCGAATGGATCAA+AGG + chr6_3:6821488-6821507 None:intergenic 30.0%
!! TCATTTTGGTAGATAATGCA+AGG + chr6_3:6821537-6821556 None:intergenic 30.0%
! GATTAAAGGCCTAATCATTT+TGG + chr6_3:6821551-6821570 None:intergenic 30.0%
! AAGCTTAGTTTAGTTAGTCT+TGG - chr6_3:6821642-6821661 Msa0936180:intron 30.0%
!! AGCTTAGTTTAGTTAGTCTT+GGG - chr6_3:6821643-6821662 Msa0936180:intron 30.0%
!!! GATTCCGAATTTTAGGTTTT+AGG - chr6_3:6821725-6821744 Msa0936180:intron 30.0%
! GATTGACTTAAGAGAGTTTA+TGG - chr6_3:6821757-6821776 Msa0936180:intron 30.0%
! CAAATCTTTTTCTCACTAGA+TGG - chr6_3:6822000-6822019 Msa0936180:intron 30.0%
!! AAAAAGTTACCGACTTCAAA+AGG + chr6_3:6822192-6822211 None:intergenic 30.0%
GAATTTAACTGAGAGTTATG+CGG + chr6_3:6822776-6822795 None:intergenic 30.0%
ACTCTCAGTTAAATTCAAAC+TGG - chr6_3:6822780-6822799 Msa0936180:intron 30.0%
! CGATCTTTTTGTGACAAAAA+AGG + chr6_3:6822940-6822959 None:intergenic 30.0%
GAGAAAGAGAAGAACAAAGA+AGG + chr6_3:6820664-6820683 None:intergenic 35.0%
AGGAAATGCAATGCAATACA+TGG + chr6_3:6821040-6821059 None:intergenic 35.0%
!!! ATGTCATGGTTTTGGTGTTT+TGG - chr6_3:6821142-6821161 Msa0936180:CDS 35.0%
!!! GTTTTTTCAGACAAATGGCT+CGG - chr6_3:6821178-6821197 Msa0936180:CDS 35.0%
AGCAAATTAAGCTTGACGTT+AGG - chr6_3:6821210-6821229 Msa0936180:CDS 35.0%
!! CACGTGTTGATTTCGATTAA+AGG + chr6_3:6821565-6821584 None:intergenic 35.0%
!! TTAGTTTAGTTAGTCTTGGG+AGG - chr6_3:6821646-6821665 Msa0936180:intron 35.0%
!! TAGTTTAGTTAGTCTTGGGA+GGG - chr6_3:6821647-6821666 Msa0936180:intron 35.0%
AGGCCCTAAAACCTAAAATT+CGG + chr6_3:6821732-6821751 None:intergenic 35.0%
TCTCTTAAGTCAATCCAAAC+AGG + chr6_3:6821752-6821771 None:intergenic 35.0%
CTTAATTCCAAAAGATCTCC+AGG - chr6_3:6821815-6821834 Msa0936180:intron 35.0%
!! TGTTGTAGTAAAGCCTTGTT+TGG + chr6_3:6821975-6821994 None:intergenic 35.0%
AACCATCATACAAGGAAATC+AGG - chr6_3:6822336-6822355 Msa0936180:intron 35.0%
TACAAGGAAATCAGGAGAAA+AGG - chr6_3:6822344-6822363 Msa0936180:intron 35.0%
GGAGTTGTTTATTATGGATC+CGG + chr6_3:6822405-6822424 None:intergenic 35.0%
GTTATAATCACGATGAGTCA+AGG - chr6_3:6822435-6822454 Msa0936180:intron 35.0%
!!! GAGTCAAGGAATGGTTTTAA+CGG - chr6_3:6822449-6822468 Msa0936180:intron 35.0%
! ACTGTTTGCGTTTAAAGCAT+CGG + chr6_3:6822558-6822577 None:intergenic 35.0%
CAGTTAAATTCAAACTGGCA+TGG - chr6_3:6822785-6822804 Msa0936180:intron 35.0%
GTAACCACAAAATTGTACCT+TGG - chr6_3:6822807-6822826 Msa0936180:intron 35.0%
! ATGACCAAGGTACAATTTTG+TGG + chr6_3:6822814-6822833 None:intergenic 35.0%
ACAAAATTGTACCTTGGTCA+TGG - chr6_3:6822813-6822832 Msa0936180:intron 35.0%
! TAACAGATAGGACATTGACT+AGG + chr6_3:6822857-6822876 None:intergenic 35.0%
TCTAAATCCTCGTAACAGAT+AGG + chr6_3:6822869-6822888 None:intergenic 35.0%
GGATTTAGACTTGACAGATT+CGG - chr6_3:6822880-6822899 Msa0936180:intron 35.0%
! TCATATAGTTTTCTGCATCC+CGG + chr6_3:6822983-6823002 None:intergenic 35.0%
AAAGAAGGATAAAGAGGGAG+TGG + chr6_3:6820649-6820668 None:intergenic 40.0%
TTTCTCCTCCAAGAAGAAGA+GGG - chr6_3:6820734-6820753 Msa0936180:CDS 40.0%
!!! GGTTTTGGTGTTTTGGCTTA+TGG - chr6_3:6821149-6821168 Msa0936180:CDS 40.0%
!!! TTTAGGTTTTAGGGCCTGTT+TGG - chr6_3:6821735-6821754 Msa0936180:intron 40.0%
!! GCTATTTTCATAAGCTGTCC+TGG + chr6_3:6821836-6821855 None:intergenic 40.0%
TAGCATCTGTTTGATCAGCA+TGG + chr6_3:6822032-6822051 None:intergenic 40.0%
GGAGAATCAACCATCATACA+AGG - chr6_3:6822328-6822347 Msa0936180:intron 40.0%
CTCCTGATTTCCTTGTATGA+TGG + chr6_3:6822341-6822360 None:intergenic 40.0%
AATCAGGAGAAAAGGAAGAG+AGG - chr6_3:6822352-6822371 Msa0936180:intron 40.0%
AATCACGATGAGTCAAGGAA+TGG - chr6_3:6822440-6822459 Msa0936180:intron 40.0%
TTCCTTAGGAAGTCTAAGTG+AGG - chr6_3:6822499-6822518 Msa0936180:intron 40.0%
TTCCTCACTTAGACTTCCTA+AGG + chr6_3:6822504-6822523 None:intergenic 40.0%
AAACAGTAACGAGCATTCCA+TGG - chr6_3:6822571-6822590 Msa0936180:intron 40.0%
!! TATAGGAGACTCTGAAACCA+TGG + chr6_3:6822591-6822610 None:intergenic 40.0%
!! TGTTGATTCAGAAGCAGCTA+AGG - chr6_3:6822628-6822647 Msa0936180:intron 40.0%
! GGACTTAACGATGGACTTAA+CGG - chr6_3:6822649-6822668 Msa0936180:intron 40.0%
ACTTAACGGTGAAAGAGTTC+AGG - chr6_3:6822663-6822682 Msa0936180:intron 40.0%
ATTATTGTTCGCCATGACCA+AGG + chr6_3:6822827-6822846 None:intergenic 40.0%
TCAATGTCCTATCTGTTACG+AGG - chr6_3:6822859-6822878 Msa0936180:intron 40.0%
GAATTTCTTCCTTGTTCGTG+TGG - chr6_3:6822902-6822921 Msa0936180:intron 40.0%
AGATGAAATCCACACGAACA+AGG + chr6_3:6822914-6822933 None:intergenic 40.0%
TTGTCACAAAAAGATCGTCG+AGG - chr6_3:6822943-6822962 Msa0936180:intron 40.0%
AGGAGCCATTGAATGAAGGA+AGG + chr6_3:6820694-6820713 None:intergenic 45.0%
TTCCTTCATTCAATGGCTCC+TGG - chr6_3:6820693-6820712 Msa0936180:CDS 45.0%
AACCAGGAGCCATTGAATGA+AGG + chr6_3:6820698-6820717 None:intergenic 45.0%
TCTTCTTGGAGGAGAAAGGA+GGG + chr6_3:6820731-6820750 None:intergenic 45.0%
TTCTTCTTGGAGGAGAAAGG+AGG + chr6_3:6820732-6820751 None:intergenic 45.0%
CTCTTCTTCTTGGAGGAGAA+AGG + chr6_3:6820735-6820754 None:intergenic 45.0%
CTTTCTCCTCCAAGAAGAAG+AGG - chr6_3:6820733-6820752 Msa0936180:CDS 45.0%
GTTTACCCTCTTCTTCTTGG+AGG + chr6_3:6820742-6820761 None:intergenic 45.0%
AGGGTTTACCCTCTTCTTCT+TGG + chr6_3:6820745-6820764 None:intergenic 45.0%
! AAGCTGTCCTGGAGATCTTT+TGG + chr6_3:6821825-6821844 None:intergenic 45.0%
!! CGATGTTGACTCAACTGGAA+GGG - chr6_3:6822268-6822287 Msa0936180:intron 45.0%
CTCGCAATGTGCTTAGATGA+TGG + chr6_3:6822305-6822324 None:intergenic 45.0%
AGGAGAAAAGGAAGAGAGGA+TGG - chr6_3:6822356-6822375 Msa0936180:intron 45.0%
TGCATCCAAGCGAATGATTC+CGG - chr6_3:6822383-6822402 Msa0936180:intron 45.0%
! AGCACGAGTACGTTTTCCTT+AGG - chr6_3:6822485-6822504 Msa0936180:intron 45.0%
GGAAGTCTAAGTGAGGAAGA+CGG - chr6_3:6822506-6822525 Msa0936180:intron 45.0%
! AAGACGGATGCCTTGATGAT+TGG - chr6_3:6822522-6822541 Msa0936180:CDS 45.0%
! AGACGGATGCCTTGATGATT+GGG - chr6_3:6822523-6822542 Msa0936180:CDS 45.0%
!! TGCGTTTAAAGCATCGGCAA+CGG + chr6_3:6822552-6822571 None:intergenic 45.0%
AGCAGCTAAGGACTTAACGA+TGG - chr6_3:6822640-6822659 Msa0936180:intron 45.0%
AAAAAGATCGTCGAGGCAGA+TGG - chr6_3:6822950-6822969 Msa0936180:intron 45.0%
AGTCATGCCGTATGAGTACA+GGG - chr6_3:6823059-6823078 Msa0936180:exon 45.0%
CAAAGAGCAACATAAGGGGA+GGG + chr6_3:6823185-6823204 None:intergenic 45.0%
TCAAAGAGCAACATAAGGGG+AGG + chr6_3:6823186-6823205 None:intergenic 45.0%
!! AAAATGAATAAAAATTAAAA+AGG + chr6_3:6820771-6820790 None:intergenic 5.0%
GGAGAAAGGAGGGTCAGAAA+TGG + chr6_3:6820721-6820740 None:intergenic 50.0%
TTGACGTTAGGCGCGAACAA+TGG - chr6_3:6821222-6821241 Msa0936180:CDS 50.0%
CGCGAACAATGGCTTTCTAG+AGG - chr6_3:6821233-6821252 Msa0936180:CDS 50.0%
!! AGTTAGTCTTGGGAGGGACA+TGG - chr6_3:6821653-6821672 Msa0936180:intron 50.0%
!! GGATGCGATGTTGACTCAAC+TGG - chr6_3:6822263-6822282 Msa0936180:intron 50.0%
!! GCGATGTTGACTCAACTGGA+AGG - chr6_3:6822267-6822286 Msa0936180:intron 50.0%
ATCTAAGCACATTGCGAGCG+AGG - chr6_3:6822307-6822326 Msa0936180:intron 50.0%
TGGATCCGGAATCATTCGCT+TGG + chr6_3:6822391-6822410 None:intergenic 50.0%
CACATATGAGCTGTCGAGCA+TGG - chr6_3:6822702-6822721 Msa0936180:intron 50.0%
!! TTATGCGGCTTTGAGAGGTC+GGG + chr6_3:6822761-6822780 None:intergenic 50.0%
!! GTTATGCGGCTTTGAGAGGT+CGG + chr6_3:6822762-6822781 None:intergenic 50.0%
!! GAGAGTTATGCGGCTTTGAG+AGG + chr6_3:6822766-6822785 None:intergenic 50.0%
CAGTCATGCCGTATGAGTAC+AGG - chr6_3:6823058-6823077 Msa0936180:exon 50.0%
CCTAGCACCCTGTACTCATA+CGG + chr6_3:6823069-6823088 None:intergenic 50.0%
GGAGGGTCAGAAATGGAACC+AGG + chr6_3:6820714-6820733 None:intergenic 55.0%
! CGGATGCCTTGATGATTGGG+AGG - chr6_3:6822526-6822545 Msa0936180:CDS 55.0%
CAACGGCCTCCCAATCATCA+AGG + chr6_3:6822535-6822554 None:intergenic 55.0%
!! CTCGGACGAAGAGTGTCATC+GGG + chr6_3:6822731-6822750 None:intergenic 55.0%
!! CCTCGGACGAAGAGTGTCAT+CGG + chr6_3:6822732-6822751 None:intergenic 55.0%
! CCGTATGAGTACAGGGTGCT+AGG - chr6_3:6823066-6823085 Msa0936180:five_prime_UTR 55.0%
CCGATGACACTCTTCGTCCG+AGG - chr6_3:6822729-6822748 Msa0936180:intron 60.0%
GAGAGGTCGGGCAAACACCT+CGG + chr6_3:6822749-6822768 None:intergenic 60.0%
CGAGGCAGATGGACGATGTC+CGG - chr6_3:6822961-6822980 Msa0936180:intron 60.0%
GAGGCAGATGGACGATGTCC+GGG - chr6_3:6822962-6822981 Msa0936180:intron 60.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 6820557 6823207 6820557 ID=Msa0936180;Name=Msa0936180
chr6_3 mRNA 6820557 6823207 6820557 ID=Msa0936180-mRNA-1;Parent=Msa0936180;Name=Msa0936180-mRNA-1;_AED=0.00;_eAED=0.00;_QI=148|1|1|1|1|1|3|120|316
chr6_3 exon 6820557 6821509 6820557 ID=Msa0936180-mRNA-1:exon:2200;Parent=Msa0936180-mRNA-1
chr6_3 exon 6822510 6822576 6822510 ID=Msa0936180-mRNA-1:exon:2199;Parent=Msa0936180-mRNA-1
chr6_3 exon 6823009 6823207 6823009 ID=Msa0936180-mRNA-1:exon:2198;Parent=Msa0936180-mRNA-1
chr6_3 five_prime_UTR 6823060 6823207 6823060 ID=Msa0936180-mRNA-1:five_prime_utr;Parent=Msa0936180-mRNA-1
chr6_3 CDS 6823009 6823059 6823009 ID=Msa0936180-mRNA-1:cds;Parent=Msa0936180-mRNA-1
chr6_3 CDS 6822510 6822576 6822510 ID=Msa0936180-mRNA-1:cds;Parent=Msa0936180-mRNA-1
chr6_3 CDS 6820677 6821509 6820677 ID=Msa0936180-mRNA-1:cds;Parent=Msa0936180-mRNA-1
chr6_3 three_prime_UTR 6820557 6820676 6820557 ID=Msa0936180-mRNA-1:three_prime_utr;Parent=Msa0936180-mRNA-1
Gene Sequence

>Msa0936180

ATGGCTCCTGGTTCCATTTCTGACCCTCCTTTCTCCTCCAAGAAGAAGAGGACAAATGGCTCGGCGAAACTGAAGCAAATTAAGCTTGACGTTAGGCGCGAACAATGGCTTTCTAGAGTCAAAAAGGGATGCGATGTTGACTCAACTGGAAGGGTTGATAGTGATCCATCATCTAAGCACATTGCGAGCGAGGAGAATCAACCATCATACAAGGAAATCAGGAGAAAAGGAAGAGAGGATGGTACATGCATCCAAGCGAATGATTCCGGATCCATAATAAACAACTCCATTCAAAGTAGTTATAATCACGATGAGTCAAGGAATGGTTTTAACGGAAGTAGAAGCAGCAGCACGAGTACGTTTTCCTTAGGAAGTCTAAGTGAGGAAGACGGATGCCTTGATGATTGGGAGGCCGTTGCCGATGCTTTAAACGCAAACAGTAACGAGCATTCCATGGTTTCAGAGTCTCCTATAGAGCATACGATTAATTATGTTGATTCAGAAGCAGCTAAGGACTTAACGATGGACTTAACGGTGAAAGAGTTCAGGTCAGCAGTTTCTGAATCACATATGAGCTGTCGAGCATGGAAGCCCGATGACACTCTTCGTCCGAGGTGTTTGCCCGACCTCTCAAAGCCGCATAACTCTCAGTTAAATTCAAACTGGCATGGTAACCACAAAATTGTACCTTGGTCATGGCGAACAATAATTTCTCAACCTAGTCAATGTCCTATCTGTTACGAGGATTTAGACTTGACAGATTCGGAATTTCTTCCTTGTTCGTGTGGATTTCATCTCTGCCTTTTTTGTCACAAAAAGATCGTCGAGGCAGATGGACGATGTCCGGGATGCAGAAAACTATATGATCATGTAGATGGAAATGTTGAATTCAATACAGAAACAAATACTTTTTATATGACTCAGTCATGCCGTATGAGTACAGGGTGCTAG

Protein sequence

>Msa0936180

MAPGSISDPPFSSKKKRTNGSAKLKQIKLDVRREQWLSRVKKGCDVDSTGRVDSDPSSKHIASEENQPSYKEIRRKGREDGTCIQANDSGSIINNSIQSSYNHDESRNGFNGSRSSSTSTFSLGSLSEEDGCLDDWEAVADALNANSNEHSMVSESPIEHTINYVDSEAAKDLTMDLTVKEFRSAVSESHMSCRAWKPDDTLRPRCLPDLSKPHNSQLNSNWHGNHKIVPWSWRTIISQPSQCPICYEDLDLTDSEFLPCSCGFHLCLFCHKKIVEADGRCPGCRKLYDHVDGNVEFNTETNTFYMTQSCRMSTGC*