AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1169630


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1169630 MtrunA17_Chr7g0263571 98.621 145 2 0 1 145 1 145 2.03e-103 291
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1169630 AT3G53470.2 68.750 96 30 0 48 143 40 135 1.17e-43 140
Msa1169630 AT3G53470.1 71.111 90 26 0 54 143 45 134 5.50e-42 136

Find 51 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCAGCTCACATATTTATT+TGG 0.178393 7_4:+62653505 None:intergenic
AGTAATTTAACTATAGAATT+TGG 0.204600 7_4:-62653321 Msa1169630:exon
CGTTCTTCCTTCGGCTCAAC+TGG 0.259066 7_4:+62654683 None:intergenic
GATCTTTCTGTTCTCTTGAT+AGG 0.273479 7_4:+62653442 None:intergenic
ATGCATATTATTGTAATTGA+TGG 0.281843 7_4:-62653270 Msa1169630:three_prime_UTR
TACAAATTTGAAGGGGAAAT+AGG 0.290190 7_4:+62654537 None:intergenic
AAGAAGAGGATGATAAAGTT+TGG 0.290458 7_4:+62654566 None:intergenic
TTGAGATTGATCGTCCCTTT+TGG 0.300645 7_4:+62654507 None:intergenic
AAAGATCAAACCTCAAATTC+TGG 0.301138 7_4:-62653426 Msa1169630:CDS
CTTCTTCATTAGCATTGAAA+TGG 0.351444 7_4:-62654650 Msa1169630:exon
TTGCAATTTCGTTCTTCCTT+CGG 0.373637 7_4:+62654674 None:intergenic
TAGTTAAATTACTTGTTGAT+TGG 0.406008 7_4:+62653331 None:intergenic
AGAAGAGGATGATAAAGTTT+GGG 0.426783 7_4:+62654567 None:intergenic
AATAGAACAGGAATAGAAAC+AGG 0.428545 7_4:+62653242 None:intergenic
TGATAAATCATCAACGGATT+GGG 0.428760 7_4:-62653587 Msa1169630:CDS
GGAACATACTACAAATTTGA+AGG 0.434060 7_4:+62654528 None:intergenic
TCTGAGATTCGCAAAGGATA+AGG 0.456294 7_4:-62654714 Msa1169630:five_prime_UTR
CTTGACACAATTTATGTCCT+CGG 0.459402 7_4:-62653201 Msa1169630:three_prime_UTR
AATTTGTAGTATGTTCCAAA+AGG 0.463127 7_4:-62654522 Msa1169630:CDS
GTGATAAATCATCAACGGAT+TGG 0.467245 7_4:-62653588 Msa1169630:CDS
TAGGACTAGTCCAGAATTTG+AGG 0.468478 7_4:+62653416 None:intergenic
ACTTGTTGATTGGTGCTTGA+AGG 0.468811 7_4:+62653341 None:intergenic
CTCCAAATAAATATGTGAGC+TGG 0.474358 7_4:-62653507 Msa1169630:CDS
ATGGTCAAACTTCAAGAAGC+AGG 0.484213 7_4:-62653557 Msa1169630:CDS
CGATGGGATATAAAAGTTGT+GGG 0.484995 7_4:+62654604 None:intergenic
CTTGTTGATTGGTGCTTGAA+GGG 0.491316 7_4:+62653342 None:intergenic
AATATGTGAGCTGGAATCCT+AGG 0.492726 7_4:-62653498 Msa1169630:CDS
GAACATACTACAAATTTGAA+GGG 0.501237 7_4:+62654529 None:intergenic
GGATCAACTTCTTCAGAAAG+TGG 0.503418 7_4:+62653463 None:intergenic
ACAAAAGTTGCACTTTGGAA+TGG 0.515386 7_4:+62653097 None:intergenic
AGTGGAAGAAGCAATAGAAC+AGG 0.515941 7_4:+62653230 None:intergenic
AGAAGCTCCAGTTGAGCCGA+AGG 0.516045 7_4:-62654690 Msa1169630:five_prime_UTR
GAGGATGATAAAGTTTGGGT+TGG 0.520750 7_4:+62654571 None:intergenic
ATTTGTAGTATGTTCCAAAA+GGG 0.522502 7_4:-62654521 Msa1169630:CDS
ACGATGGGATATAAAAGTTG+TGG 0.530720 7_4:+62654603 None:intergenic
ATTTGAAGGGGAAATAGGAA+TGG 0.544166 7_4:+62654542 None:intergenic
CAACGGATTGGGACAAGGCA+TGG 0.546580 7_4:-62653576 Msa1169630:CDS
GAAATAGGAATGGAAAGAAG+AGG 0.566566 7_4:+62654552 None:intergenic
GGGTTGGTGAAGAGAAACGA+TGG 0.569268 7_4:+62654587 None:intergenic
GGTTGGTGAAGAGAAACGAT+GGG 0.586305 7_4:+62654588 None:intergenic
CAAAGAAACGCCGATAACAA+TGG 0.593112 7_4:-62654487 Msa1169630:intron
ATCATCAACGGATTGGGACA+AGG 0.594053 7_4:-62653581 Msa1169630:CDS
AGTGGAAAATCTGAACGCCT+AGG 0.596558 7_4:+62653481 None:intergenic
CTCAGGTGATAAATCATCAA+CGG 0.602810 7_4:-62653593 Msa1169630:intron
CGAGGACATAAATTGTGTCA+AGG 0.609330 7_4:+62653202 None:intergenic
AACATACTACAAATTTGAAG+GGG 0.613458 7_4:+62654530 None:intergenic
TGGTCAAACTTCAAGAAGCA+GGG 0.615004 7_4:-62653556 Msa1169630:CDS
GTAAAATCTGAGATTCGCAA+AGG 0.620857 7_4:-62654720 Msa1169630:five_prime_UTR
AATTGTGTCAAGGACTCGAG+TGG 0.625018 7_4:+62653212 None:intergenic
GCCCCACCAAGAGTAAAAGT+AGG 0.658878 7_4:+62653397 None:intergenic
AATAGAGAATAACAAATCCG+AGG 0.659040 7_4:+62653184 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGTGATATAATTATGATTAA+CGG + chr7_4:62653619-62653638 None:intergenic 15.0%
!! AGTAATTTAACTATAGAATT+TGG - chr7_4:62654512-62654531 Msa1169630:CDS 15.0%
!! TGTGATATAATTATGATTAA+CGG + chr7_4:62653619-62653638 None:intergenic 15.0%
!! AGTAATTTAACTATAGAATT+TGG - chr7_4:62654512-62654531 Msa1169630:CDS 15.0%
!! TAGAAAAATACCATTGTTAT+CGG + chr7_4:62653359-62653378 None:intergenic 20.0%
!! TTTCAATTTCTATTTCAATC+CGG - chr7_4:62653947-62653966 Msa1169630:intron 20.0%
!!! TAGTTAAATTACTTGTTGAT+TGG + chr7_4:62654505-62654524 None:intergenic 20.0%
!! ATGCATATTATTGTAATTGA+TGG - chr7_4:62654563-62654582 Msa1169630:CDS 20.0%
!! TAGAAAAATACCATTGTTAT+CGG + chr7_4:62653359-62653378 None:intergenic 20.0%
!! TTTCAATTTCTATTTCAATC+CGG - chr7_4:62653947-62653966 Msa1169630:intron 20.0%
!!! TAGTTAAATTACTTGTTGAT+TGG + chr7_4:62654505-62654524 None:intergenic 20.0%
!! ATGCATATTATTGTAATTGA+TGG - chr7_4:62654563-62654582 Msa1169630:CDS 20.0%
! AACATACTACAAATTTGAAG+GGG + chr7_4:62653306-62653325 None:intergenic 25.0%
! GAACATACTACAAATTTGAA+GGG + chr7_4:62653307-62653326 None:intergenic 25.0%
! AATTTGTAGTATGTTCCAAA+AGG - chr7_4:62653311-62653330 Msa1169630:three_prime_UTR 25.0%
! ATTTGTAGTATGTTCCAAAA+GGG - chr7_4:62653312-62653331 Msa1169630:three_prime_UTR 25.0%
! AGATTCGTAAAAATCAAACA+GGG + chr7_4:62653489-62653508 None:intergenic 25.0%
! TAGATTCGTAAAAATCAAAC+AGG + chr7_4:62653490-62653509 None:intergenic 25.0%
! AAAATACAGTGTTTAAGAGA+GGG - chr7_4:62653778-62653797 Msa1169630:intron 25.0%
! GAAATAGAAATTGAAATTCG+CGG + chr7_4:62653943-62653962 None:intergenic 25.0%
! ATGAAACAATTGATCGAAAT+TGG + chr7_4:62653996-62654015 None:intergenic 25.0%
!! TTAAGTATGTTTAGAATGAC+CGG - chr7_4:62654035-62654054 Msa1169630:intron 25.0%
! ATGAAACTCAACTAATTAAC+AGG + chr7_4:62654189-62654208 None:intergenic 25.0%
! AACATACTACAAATTTGAAG+GGG + chr7_4:62653306-62653325 None:intergenic 25.0%
! GAACATACTACAAATTTGAA+GGG + chr7_4:62653307-62653326 None:intergenic 25.0%
! AATTTGTAGTATGTTCCAAA+AGG - chr7_4:62653311-62653330 Msa1169630:three_prime_UTR 25.0%
! ATTTGTAGTATGTTCCAAAA+GGG - chr7_4:62653312-62653331 Msa1169630:three_prime_UTR 25.0%
! AGATTCGTAAAAATCAAACA+GGG + chr7_4:62653489-62653508 None:intergenic 25.0%
! TAGATTCGTAAAAATCAAAC+AGG + chr7_4:62653490-62653509 None:intergenic 25.0%
! AAAATACAGTGTTTAAGAGA+GGG - chr7_4:62653778-62653797 Msa1169630:intron 25.0%
! GAAATAGAAATTGAAATTCG+CGG + chr7_4:62653943-62653962 None:intergenic 25.0%
! ATGAAACAATTGATCGAAAT+TGG + chr7_4:62653996-62654015 None:intergenic 25.0%
!! TTAAGTATGTTTAGAATGAC+CGG - chr7_4:62654035-62654054 Msa1169630:intron 25.0%
! ATGAAACTCAACTAATTAAC+AGG + chr7_4:62654189-62654208 None:intergenic 25.0%
! CTTCTTCATTAGCATTGAAA+TGG - chr7_4:62653183-62653202 Msa1169630:three_prime_UTR 30.0%
AGAAGAGGATGATAAAGTTT+GGG + chr7_4:62653269-62653288 None:intergenic 30.0%
AAGAAGAGGATGATAAAGTT+TGG + chr7_4:62653270-62653289 None:intergenic 30.0%
TACAAATTTGAAGGGGAAAT+AGG + chr7_4:62653299-62653318 None:intergenic 30.0%
GGAACATACTACAAATTTGA+AGG + chr7_4:62653308-62653327 None:intergenic 30.0%
! GCATAAGTTAGTTGTTGATT+CGG - chr7_4:62653705-62653724 Msa1169630:intron 30.0%
CAAAATACAGTGTTTAAGAG+AGG - chr7_4:62653777-62653796 Msa1169630:intron 30.0%
AAATACAGTGTTTAAGAGAG+GGG - chr7_4:62653779-62653798 Msa1169630:intron 30.0%
TTTCCTTCCTAGAAAGTAAT+CGG - chr7_4:62653809-62653828 Msa1169630:intron 30.0%
AAATTCGCGGAATAAAAGAT+TGG + chr7_4:62653930-62653949 None:intergenic 30.0%
! TAAGTATGTTTAGAATGACC+GGG - chr7_4:62654036-62654055 Msa1169630:intron 30.0%
! TTTTGCCAAATTCACATAGT+CGG - chr7_4:62654126-62654145 Msa1169630:intron 30.0%
! TGATAAATCATCAACGGATT+GGG - chr7_4:62654246-62654265 Msa1169630:intron 30.0%
TTCCAGCTCACATATTTATT+TGG + chr7_4:62654331-62654350 None:intergenic 30.0%
AAAGATCAAACCTCAAATTC+TGG - chr7_4:62654407-62654426 Msa1169630:intron 30.0%
AATAGAACAGGAATAGAAAC+AGG + chr7_4:62654594-62654613 None:intergenic 30.0%
AATAGAGAATAACAAATCCG+AGG + chr7_4:62654652-62654671 None:intergenic 30.0%
! CTTCTTCATTAGCATTGAAA+TGG - chr7_4:62653183-62653202 Msa1169630:three_prime_UTR 30.0%
AGAAGAGGATGATAAAGTTT+GGG + chr7_4:62653269-62653288 None:intergenic 30.0%
AAGAAGAGGATGATAAAGTT+TGG + chr7_4:62653270-62653289 None:intergenic 30.0%
TACAAATTTGAAGGGGAAAT+AGG + chr7_4:62653299-62653318 None:intergenic 30.0%
GGAACATACTACAAATTTGA+AGG + chr7_4:62653308-62653327 None:intergenic 30.0%
! GCATAAGTTAGTTGTTGATT+CGG - chr7_4:62653705-62653724 Msa1169630:intron 30.0%
CAAAATACAGTGTTTAAGAG+AGG - chr7_4:62653777-62653796 Msa1169630:intron 30.0%
AAATACAGTGTTTAAGAGAG+GGG - chr7_4:62653779-62653798 Msa1169630:intron 30.0%
TTTCCTTCCTAGAAAGTAAT+CGG - chr7_4:62653809-62653828 Msa1169630:intron 30.0%
AAATTCGCGGAATAAAAGAT+TGG + chr7_4:62653930-62653949 None:intergenic 30.0%
! TAAGTATGTTTAGAATGACC+GGG - chr7_4:62654036-62654055 Msa1169630:intron 30.0%
! TTTTGCCAAATTCACATAGT+CGG - chr7_4:62654126-62654145 Msa1169630:intron 30.0%
! TGATAAATCATCAACGGATT+GGG - chr7_4:62654246-62654265 Msa1169630:intron 30.0%
TTCCAGCTCACATATTTATT+TGG + chr7_4:62654331-62654350 None:intergenic 30.0%
AAAGATCAAACCTCAAATTC+TGG - chr7_4:62654407-62654426 Msa1169630:intron 30.0%
AATAGAACAGGAATAGAAAC+AGG + chr7_4:62654594-62654613 None:intergenic 30.0%
AATAGAGAATAACAAATCCG+AGG + chr7_4:62654652-62654671 None:intergenic 30.0%
! GTAAAATCTGAGATTCGCAA+AGG - chr7_4:62653113-62653132 Msa1169630:three_prime_UTR 35.0%
TTGCAATTTCGTTCTTCCTT+CGG + chr7_4:62653162-62653181 None:intergenic 35.0%
CGATGGGATATAAAAGTTGT+GGG + chr7_4:62653232-62653251 None:intergenic 35.0%
ACGATGGGATATAAAAGTTG+TGG + chr7_4:62653233-62653252 None:intergenic 35.0%
GAAATAGGAATGGAAAGAAG+AGG + chr7_4:62653284-62653303 None:intergenic 35.0%
ATTTGAAGGGGAAATAGGAA+TGG + chr7_4:62653294-62653313 None:intergenic 35.0%
! GAAAACATGTCGCATTTTAG+AGG + chr7_4:62653597-62653616 None:intergenic 35.0%
!! GTACCTCTAATTAGTTCTAG+TGG - chr7_4:62653641-62653660 Msa1169630:intron 35.0%
GATCCACTAGAACTAATTAG+AGG + chr7_4:62653647-62653666 None:intergenic 35.0%
ACAGGCTCATCTAATTAAGT+AGG + chr7_4:62653675-62653694 None:intergenic 35.0%
ACTTATGCAACAAGCTAAAC+AGG + chr7_4:62653693-62653712 None:intergenic 35.0%
AATACAGTGTTTAAGAGAGG+GGG - chr7_4:62653780-62653799 Msa1169630:intron 35.0%
ACCAAGAAGATTCTTGAAAC+CGG + chr7_4:62653969-62653988 None:intergenic 35.0%
CGATCAATTGTTTCATAGAG+AGG - chr7_4:62654000-62654019 Msa1169630:intron 35.0%
TTGACAAAATCATTGCATCC+CGG + chr7_4:62654057-62654076 None:intergenic 35.0%
TAACAGGAAGATTACATGTC+TGG + chr7_4:62654173-62654192 None:intergenic 35.0%
CTCAGGTGATAAATCATCAA+CGG - chr7_4:62654240-62654259 Msa1169630:intron 35.0%
GTGATAAATCATCAACGGAT+TGG - chr7_4:62654245-62654264 Msa1169630:intron 35.0%
CTCCAAATAAATATGTGAGC+TGG - chr7_4:62654326-62654345 Msa1169630:intron 35.0%
GATCTTTCTGTTCTCTTGAT+AGG + chr7_4:62654394-62654413 None:intergenic 35.0%
!! ACTAGTCCTACTTTTACTCT+TGG - chr7_4:62654430-62654449 Msa1169630:intron 35.0%
CTTGACACAATTTATGTCCT+CGG - chr7_4:62654632-62654651 Msa1169630:CDS 35.0%
! GTAAAATCTGAGATTCGCAA+AGG - chr7_4:62653113-62653132 Msa1169630:three_prime_UTR 35.0%
TTGCAATTTCGTTCTTCCTT+CGG + chr7_4:62653162-62653181 None:intergenic 35.0%
CGATGGGATATAAAAGTTGT+GGG + chr7_4:62653232-62653251 None:intergenic 35.0%
ACGATGGGATATAAAAGTTG+TGG + chr7_4:62653233-62653252 None:intergenic 35.0%
GAAATAGGAATGGAAAGAAG+AGG + chr7_4:62653284-62653303 None:intergenic 35.0%
ATTTGAAGGGGAAATAGGAA+TGG + chr7_4:62653294-62653313 None:intergenic 35.0%
! GAAAACATGTCGCATTTTAG+AGG + chr7_4:62653597-62653616 None:intergenic 35.0%
!! GTACCTCTAATTAGTTCTAG+TGG - chr7_4:62653641-62653660 Msa1169630:intron 35.0%
GATCCACTAGAACTAATTAG+AGG + chr7_4:62653647-62653666 None:intergenic 35.0%
ACAGGCTCATCTAATTAAGT+AGG + chr7_4:62653675-62653694 None:intergenic 35.0%
ACTTATGCAACAAGCTAAAC+AGG + chr7_4:62653693-62653712 None:intergenic 35.0%
AATACAGTGTTTAAGAGAGG+GGG - chr7_4:62653780-62653799 Msa1169630:intron 35.0%
ACCAAGAAGATTCTTGAAAC+CGG + chr7_4:62653969-62653988 None:intergenic 35.0%
CGATCAATTGTTTCATAGAG+AGG - chr7_4:62654000-62654019 Msa1169630:intron 35.0%
TTGACAAAATCATTGCATCC+CGG + chr7_4:62654057-62654076 None:intergenic 35.0%
TAACAGGAAGATTACATGTC+TGG + chr7_4:62654173-62654192 None:intergenic 35.0%
CTCAGGTGATAAATCATCAA+CGG - chr7_4:62654240-62654259 Msa1169630:intron 35.0%
GTGATAAATCATCAACGGAT+TGG - chr7_4:62654245-62654264 Msa1169630:intron 35.0%
CTCCAAATAAATATGTGAGC+TGG - chr7_4:62654326-62654345 Msa1169630:intron 35.0%
GATCTTTCTGTTCTCTTGAT+AGG + chr7_4:62654394-62654413 None:intergenic 35.0%
!! ACTAGTCCTACTTTTACTCT+TGG - chr7_4:62654430-62654449 Msa1169630:intron 35.0%
CTTGACACAATTTATGTCCT+CGG - chr7_4:62654632-62654651 Msa1169630:CDS 35.0%
! TCTGAGATTCGCAAAGGATA+AGG - chr7_4:62653119-62653138 Msa1169630:three_prime_UTR 40.0%
GAGGATGATAAAGTTTGGGT+TGG + chr7_4:62653265-62653284 None:intergenic 40.0%
! TTGAGATTGATCGTCCCTTT+TGG + chr7_4:62653329-62653348 None:intergenic 40.0%
CAAAGAAACGCCGATAACAA+TGG - chr7_4:62653346-62653365 Msa1169630:CDS 40.0%
! ATGCCGATTACTTTCTAGGA+AGG + chr7_4:62653815-62653834 None:intergenic 40.0%
! GATCATGCCGATTACTTTCT+AGG + chr7_4:62653819-62653838 None:intergenic 40.0%
! TGAGGGTGTAGGATTCAAAT+TGG - chr7_4:62653861-62653880 Msa1169630:intron 40.0%
TCCGGTTTCAAGAATCTTCT+TGG - chr7_4:62653965-62653984 Msa1169630:intron 40.0%
! CAACACCGACTATGTGAATT+TGG + chr7_4:62654134-62654153 None:intergenic 40.0%
AACTCTTCGTTCAATGTCTC+AGG - chr7_4:62654223-62654242 Msa1169630:intron 40.0%
ATGGTCAAACTTCAAGAAGC+AGG - chr7_4:62654276-62654295 Msa1169630:intron 40.0%
TGGTCAAACTTCAAGAAGCA+GGG - chr7_4:62654277-62654296 Msa1169630:intron 40.0%
AATATGTGAGCTGGAATCCT+AGG - chr7_4:62654335-62654354 Msa1169630:intron 40.0%
GGATCAACTTCTTCAGAAAG+TGG + chr7_4:62654373-62654392 None:intergenic 40.0%
!! TAGGACTAGTCCAGAATTTG+AGG + chr7_4:62654420-62654439 None:intergenic 40.0%
!! AGTCCTACTTTTACTCTTGG+TGG - chr7_4:62654433-62654452 Msa1169630:intron 40.0%
!! GTCCTACTTTTACTCTTGGT+GGG - chr7_4:62654434-62654453 Msa1169630:intron 40.0%
!! TCCTACTTTTACTCTTGGTG+GGG - chr7_4:62654435-62654454 Msa1169630:intron 40.0%
! CTTGTTGATTGGTGCTTGAA+GGG + chr7_4:62654494-62654513 None:intergenic 40.0%
! ACTTGTTGATTGGTGCTTGA+AGG + chr7_4:62654495-62654514 None:intergenic 40.0%
AGTGGAAGAAGCAATAGAAC+AGG + chr7_4:62654606-62654625 None:intergenic 40.0%
CGAGGACATAAATTGTGTCA+AGG + chr7_4:62654634-62654653 None:intergenic 40.0%
! TCTGAGATTCGCAAAGGATA+AGG - chr7_4:62653119-62653138 Msa1169630:three_prime_UTR 40.0%
GAGGATGATAAAGTTTGGGT+TGG + chr7_4:62653265-62653284 None:intergenic 40.0%
! TTGAGATTGATCGTCCCTTT+TGG + chr7_4:62653329-62653348 None:intergenic 40.0%
CAAAGAAACGCCGATAACAA+TGG - chr7_4:62653346-62653365 Msa1169630:CDS 40.0%
! ATGCCGATTACTTTCTAGGA+AGG + chr7_4:62653815-62653834 None:intergenic 40.0%
! GATCATGCCGATTACTTTCT+AGG + chr7_4:62653819-62653838 None:intergenic 40.0%
! TGAGGGTGTAGGATTCAAAT+TGG - chr7_4:62653861-62653880 Msa1169630:intron 40.0%
TCCGGTTTCAAGAATCTTCT+TGG - chr7_4:62653965-62653984 Msa1169630:intron 40.0%
! CAACACCGACTATGTGAATT+TGG + chr7_4:62654134-62654153 None:intergenic 40.0%
AACTCTTCGTTCAATGTCTC+AGG - chr7_4:62654223-62654242 Msa1169630:intron 40.0%
ATGGTCAAACTTCAAGAAGC+AGG - chr7_4:62654276-62654295 Msa1169630:intron 40.0%
TGGTCAAACTTCAAGAAGCA+GGG - chr7_4:62654277-62654296 Msa1169630:intron 40.0%
AATATGTGAGCTGGAATCCT+AGG - chr7_4:62654335-62654354 Msa1169630:intron 40.0%
GGATCAACTTCTTCAGAAAG+TGG + chr7_4:62654373-62654392 None:intergenic 40.0%
!! TAGGACTAGTCCAGAATTTG+AGG + chr7_4:62654420-62654439 None:intergenic 40.0%
!! AGTCCTACTTTTACTCTTGG+TGG - chr7_4:62654433-62654452 Msa1169630:intron 40.0%
!! GTCCTACTTTTACTCTTGGT+GGG - chr7_4:62654434-62654453 Msa1169630:intron 40.0%
!! TCCTACTTTTACTCTTGGTG+GGG - chr7_4:62654435-62654454 Msa1169630:intron 40.0%
! CTTGTTGATTGGTGCTTGAA+GGG + chr7_4:62654494-62654513 None:intergenic 40.0%
! ACTTGTTGATTGGTGCTTGA+AGG + chr7_4:62654495-62654514 None:intergenic 40.0%
AGTGGAAGAAGCAATAGAAC+AGG + chr7_4:62654606-62654625 None:intergenic 40.0%
CGAGGACATAAATTGTGTCA+AGG + chr7_4:62654634-62654653 None:intergenic 40.0%
!! GGTTGGTGAAGAGAAACGAT+GGG + chr7_4:62653248-62653267 None:intergenic 45.0%
!! ATCATCAACGGATTGGGACA+AGG - chr7_4:62654252-62654271 Msa1169630:intron 45.0%
AGTGGAAAATCTGAACGCCT+AGG + chr7_4:62654355-62654374 None:intergenic 45.0%
AATTGTGTCAAGGACTCGAG+TGG + chr7_4:62654624-62654643 None:intergenic 45.0%
!! GGTTGGTGAAGAGAAACGAT+GGG + chr7_4:62653248-62653267 None:intergenic 45.0%
!! ATCATCAACGGATTGGGACA+AGG - chr7_4:62654252-62654271 Msa1169630:intron 45.0%
AGTGGAAAATCTGAACGCCT+AGG + chr7_4:62654355-62654374 None:intergenic 45.0%
AATTGTGTCAAGGACTCGAG+TGG + chr7_4:62654624-62654643 None:intergenic 45.0%
!! GGGTTGGTGAAGAGAAACGA+TGG + chr7_4:62653249-62653268 None:intergenic 50.0%
! TGCAGAGGTTGACTTCAGTG+AGG - chr7_4:62653843-62653862 Msa1169630:intron 50.0%
! GCAGAGGTTGACTTCAGTGA+GGG - chr7_4:62653844-62653863 Msa1169630:intron 50.0%
! GTTGACTTCAGTGAGGGTGT+AGG - chr7_4:62653850-62653869 Msa1169630:intron 50.0%
GCCCCACCAAGAGTAAAAGT+AGG + chr7_4:62654439-62654458 None:intergenic 50.0%
!! GGGTTGGTGAAGAGAAACGA+TGG + chr7_4:62653249-62653268 None:intergenic 50.0%
! TGCAGAGGTTGACTTCAGTG+AGG - chr7_4:62653843-62653862 Msa1169630:intron 50.0%
! GCAGAGGTTGACTTCAGTGA+GGG - chr7_4:62653844-62653863 Msa1169630:intron 50.0%
! GTTGACTTCAGTGAGGGTGT+AGG - chr7_4:62653850-62653869 Msa1169630:intron 50.0%
GCCCCACCAAGAGTAAAAGT+AGG + chr7_4:62654439-62654458 None:intergenic 50.0%
AGAAGCTCCAGTTGAGCCGA+AGG - chr7_4:62653143-62653162 Msa1169630:three_prime_UTR 55.0%
CGTTCTTCCTTCGGCTCAAC+TGG + chr7_4:62653153-62653172 None:intergenic 55.0%
TCGGCATGATCATCGTGCAG+AGG - chr7_4:62653828-62653847 Msa1169630:intron 55.0%
!! CAACGGATTGGGACAAGGCA+TGG - chr7_4:62654257-62654276 Msa1169630:intron 55.0%
AGAAGCTCCAGTTGAGCCGA+AGG - chr7_4:62653143-62653162 Msa1169630:three_prime_UTR 55.0%
CGTTCTTCCTTCGGCTCAAC+TGG + chr7_4:62653153-62653172 None:intergenic 55.0%
TCGGCATGATCATCGTGCAG+AGG - chr7_4:62653828-62653847 Msa1169630:intron 55.0%
!! CAACGGATTGGGACAAGGCA+TGG - chr7_4:62654257-62654276 Msa1169630:intron 55.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 62653106 62654749 62653106 ID=Msa1169630;Name=Msa1169630
chr7_4 mRNA 62653106 62654749 62653106 ID=Msa1169630-mRNA-1;Parent=Msa1169630;Name=Msa1169630-mRNA-1;_AED=0.12;_eAED=0.12;_QI=96|1|1|1|1|1|2|233|145
chr7_4 exon 62653106 62653610 62653106 ID=Msa1169630-mRNA-1:exon:19905;Parent=Msa1169630-mRNA-1
chr7_4 exon 62654488 62654749 62654488 ID=Msa1169630-mRNA-1:exon:19904;Parent=Msa1169630-mRNA-1
chr7_4 five_prime_UTR 62654654 62654749 62654654 ID=Msa1169630-mRNA-1:five_prime_utr;Parent=Msa1169630-mRNA-1
chr7_4 CDS 62654488 62654653 62654488 ID=Msa1169630-mRNA-1:cds;Parent=Msa1169630-mRNA-1
chr7_4 CDS 62653339 62653610 62653339 ID=Msa1169630-mRNA-1:cds;Parent=Msa1169630-mRNA-1
chr7_4 three_prime_UTR 62653106 62653338 62653106 ID=Msa1169630-mRNA-1:three_prime_utr;Parent=Msa1169630-mRNA-1
Gene Sequence

>Msa1169630

ATGGATATTCATAGACACATTTCAATACCCACAACTTTTATATCCCATCGTTTCTCTTCACCAACCCAAACTTTATCATCCTCTTCTTTCCATTCCTATTTCCCCTTCAAATTTGTAGTATGTTCCAAAAGGGACGATCAATCTCAAAGAAACGCCGATAACAATGGTGATAAATCATCAACGGATTGGGACAAGGCATGGTCAAACTTCAAGAAGCAGGGAAAAAAAACTCTCTTCTCAAATTTTTCTCCAAATAAATATGTGAGCTGGAATCCTAGGCGTTCAGATTTTCCACTTTCTGAAGAAGTTGATCCTATCAAGAGAACAGAAAGATCAAACCTCAAATTCTGGACTAGTCCTACTTTTACTCTTGGTGGGGCACTTATCATTCTCATAGTTCTTTTGTTGTACACCCTTCAAGCACCAATCAACAAGTAA

Protein sequence

>Msa1169630

MDIHRHISIPTTFISHRFSSPTQTLSSSSFHSYFPFKFVVCSKRDDQSQRNADNNGDKSSTDWDKAWSNFKKQGKKTLFSNFSPNKYVSWNPRRSDFPLSEEVDPIKRTERSNLKFWTSPTFTLGGALIILIVLLLYTLQAPINK*