AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1463920


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1463920 MtrunA17_Chr4g0033871 94.275 559 27 1 18 576 17 570 0.0 1077
Msa1463920 MtrunA17_Chr4g0033871 84.987 373 56 0 613 985 46 418 0.0 644
Msa1463920 MtrunA17_Chr4g0033891 80.936 577 82 3 1 576 1 550 0.0 926
Msa1463920 MtrunA17_Chr4g0033891 96.247 373 14 0 613 985 26 398 0.0 728
Msa1463920 MtrunA17_Chr4g0033911 85.227 528 78 0 49 576 225 752 0.0 918
Msa1463920 MtrunA17_Chr4g0033911 96.237 372 14 0 614 985 229 600 0.0 726
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 239 sgRNAs with CRISPR-Local

Find 605 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTCTTTGTGCTTCTAATA+TGG 0.151485 tig0043746:-7868 Msa1463920:intergenic
TTCTGTTTGTGCTTCTAATA+TGG 0.174686 tig0043746:-2005 Msa1463920:intergenic
GAGAGCATTGGTAAGGTTTC+GGG 0.190923 tig0043746:+3348 Msa1463920:CDS
GTCCTTACAAATTGAATTTC+AGG 0.203917 tig0043746:+590 Msa1463920:CDS
TCCGGCTTACTGTAGGCTTT+TGG 0.204716 tig0043746:+8954 Msa1463920:CDS
GGATCAAATGCGGGAAAATT+AGG 0.229321 tig0043746:-8939 Msa1463920:intergenic
CTTTGATGATCCAAACAATT+TGG 0.249297 tig0043746:-2032 Msa1463920:intergenic
CTCTCGTATTTCCCATATTC+TGG 0.251716 tig0043746:-1719 Msa1463920:intergenic
TCCTCGAAATTGTCATTTAT+CGG 0.257328 tig0043746:+2138 Msa1463920:CDS
TTCCTTCAGATTCTAGTTCC+TGG 0.262534 tig0043746:-8455 Msa1463920:intergenic
AGCATTGCACTGCCAGAATA+TGG 0.262779 tig0043746:+1707 Msa1463920:CDS
TGCTTCTAATATGGGTCCTT+GGG 0.268218 tig0043746:-1996 Msa1463920:intergenic
GCTTGGTTGAATACAGTATC+AGG 0.268880 tig0043746:-2913 Msa1463920:intergenic
TGCTTCTAATATGGGCCCTT+GGG 0.269342 tig0043746:-7859 Msa1463920:intergenic
TCTTCCACAGCTTCCTGCTT+TGG 0.275759 tig0043746:-5900 Msa1463920:intergenic
TCTCTTTGTGCTTCTAATAT+GGG 0.276808 tig0043746:-7867 Msa1463920:intergenic
CTGAACAAAACGGCGTTGTT+TGG 0.281671 tig0043746:-7633 Msa1463920:intergenic
AGCACTGCACTACAAGAATA+TGG 0.285139 tig0043746:+7570 Msa1463920:CDS
GACTTGTGGTTTGGAGAGTT+TGG 0.285707 tig0043746:-2834 Msa1463920:intergenic
TTCCTTCCAATTCGAGTTCC+TGG 0.285931 tig0043746:-2528 Msa1463920:intergenic
TGGGAAGGTGAAAACCGTTT+TGG 0.293842 tig0043746:-476 Msa1463920:intergenic
CTGTTAGATCAGCCCCTTGC+TGG 0.315011 tig0043746:-2714 Msa1463920:intergenic
AAGATTGGTTTAGCCCTTTA+CGG 0.321046 tig0043746:+5867 Msa1463920:CDS
CAAAAGAGGTTGTCAAGTTC+TGG 0.321849 tig0043746:-7834 Msa1463920:intergenic
TTGTCATTTATCGGCTATAT+CGG 0.328484 tig0043746:+2147 Msa1463920:CDS
AAGTCCTAGTTACCTGCTTT+TGG 0.329378 tig0043746:+2852 Msa1463920:CDS
AAGTCCTAGTTACCTGCTTT+TGG 0.329378 tig0043746:+8769 Msa1463920:CDS
TGGTGAACTGCTGCATTCAT+TGG 0.330055 tig0043746:-1780 Msa1463920:intergenic
ATCACTTATGCACTTAATCT+TGG 0.331813 tig0043746:+3144 Msa1463920:CDS
TCTGTTTGTGCTTCTAATAT+GGG 0.332552 tig0043746:-2004 Msa1463920:intergenic
GAAATCTTATATCGGGATTT+CGG 0.334553 tig0043746:+3090 Msa1463920:CDS
TGGTGGCGTCACTCCATTAC+AGG 0.335272 tig0043746:+8100 Msa1463920:CDS
GTGCTTCTAATATGGGTCCT+TGG 0.338955 tig0043746:-1997 Msa1463920:intergenic
GGAGAGCATTGGTAAGGTTT+CGG 0.339213 tig0043746:+3347 Msa1463920:CDS
TGGTGGTGTCACTCCATTAC+AGG 0.339936 tig0043746:+2237 Msa1463920:CDS
GGTGAACTGCTGCATTCATT+GGG 0.340579 tig0043746:-1779 Msa1463920:intergenic
CAGTTAGATCAGCCCCTTGC+TGG 0.342704 tig0043746:-8641 Msa1463920:intergenic
TTCCCGCATTTGATCCATTC+CGG 0.349342 tig0043746:+8936 Msa1463920:CDS
AGGGCTGAGCTAGGCAGTTC+AGG 0.364247 tig0043746:-8618 Msa1463920:intergenic
CAGAAGAGGTTGTCAAGTTC+AGG 0.367195 tig0043746:-1971 Msa1463920:intergenic
ACAGGTATACCTGGAGGATA+TGG 0.369128 tig0043746:-3384 Msa1463920:intergenic
TGGGATCCAGGCAGCAATAA+TGG 0.370354 tig0043746:+2084 Msa1463920:CDS
ACAGAAGCAGCCAAATTGTT+TGG 0.373346 tig0043746:+2022 Msa1463920:CDS
GTGCTTCTAATATGGGCCCT+TGG 0.374043 tig0043746:-7860 Msa1463920:intergenic
GTCCTGAAATTCAATTTGTA+AGG 0.380572 tig0043746:-592 Msa1463920:intergenic
AAGAAATTCTCCTGGTGAAC+AGG 0.381246 tig0043746:-2110 Msa1463920:intergenic
TCAGTAAGTACTCCGTCTTT+AGG 0.381290 tig0043746:-3243 Msa1463920:intergenic
TGCTATCCAGGAACTCGAAT+TGG 0.387817 tig0043746:+2522 Msa1463920:CDS
CACTTAATCTTGGAACTTGT+AGG 0.388613 tig0043746:+3154 Msa1463920:CDS
AATATCTAAATTACCTGTAA+TGG 0.390441 tig0043746:-8113 Msa1463920:intergenic
TGAACAAAACGGCGTTGTTT+GGG 0.390450 tig0043746:-7632 Msa1463920:intergenic
TGCTTCATTTGCTAATTCAA+TGG 0.393014 tig0043746:-8862 Msa1463920:intergenic
GCAGGTATTGAGTGCTATCC+AGG 0.393137 tig0043746:+2510 Msa1463920:intron
TAAAAGAAAAGTAACGATAA+AGG 0.393781 tig0043746:+3326 Msa1463920:CDS
CAAATATCCTCCCGGTGAAC+AGG 0.396618 tig0043746:-7973 Msa1463920:intergenic
GTAGGAAAAGTGGAAGAAAA+TGG 0.398084 tig0043746:+394 Msa1463920:exon
GGTAACTAGGACTTGTGGTT+TGG 0.402917 tig0043746:-2843 Msa1463920:intergenic
GGTAACTAGGACTTGTGCTT+TGG 0.403915 tig0043746:-8770 Msa1463920:intergenic
TCTTCGTTGACTCAACTCAT+TGG 0.404542 tig0043746:+7777 Msa1463920:CDS
CTCTGATGATCCAAACAGTT+TGG 0.408501 tig0043746:-7895 Msa1463920:intergenic
CTAGCTCAGCCCTCCAGCAA+GGG 0.409492 tig0043746:+2701 Msa1463920:CDS
CTAGCTCAGCCCTCCAGCAA+GGG 0.409492 tig0043746:+8618 Msa1463920:CDS
AGAGAAGCATCCAAACTGTT+TGG 0.409893 tig0043746:+7885 Msa1463920:CDS
CCTTGCTGGAGGGCTGAGCT+AGG 0.410613 tig0043746:-2700 Msa1463920:intergenic
CCTTGCTGGAGGGCTGAGCT+AGG 0.410613 tig0043746:-8627 Msa1463920:intergenic
TTATTCCCGATAAAAGCCTT+TGG 0.411005 tig0043746:-3185 Msa1463920:intergenic
TTGTCGGAGGTACTACTTGT+GGG 0.411563 tig0043746:+2065 Msa1463920:CDS
GCCTCGATGACTCGACTCAT+TGG 0.419230 tig0043746:+1914 Msa1463920:CDS
ATCACTTCACCTACTTATCA+TGG 0.422929 tig0043746:+8488 Msa1463920:CDS
GACAACTATAGAAGAAAGTA+AGG 0.423013 tig0043746:-3499 Msa1463920:intergenic
CAGCACCTTCACTTCTTACA+TGG 0.424209 tig0043746:-3455 Msa1463920:intergenic
AAGCGGATGAAATCTTATAT+CGG 0.425695 tig0043746:+3082 Msa1463920:CDS
GTTGAGCTCTAGCAGCATCT+AGG 0.428467 tig0043746:-8806 Msa1463920:intergenic
AGCCGCAATGGATCAATTGC+AGG 0.428507 tig0043746:-3021 Msa1463920:intergenic
AATAACTGAATCACCTGTAA+TGG 0.429007 tig0043746:-2250 Msa1463920:intergenic
ATCACTTCACCTACTTATCA+TGG 0.430365 tig0043746:+2571 Msa1463920:CDS
GAAGCTCATGGCGCACATCT+AGG 0.435728 tig0043746:+8578 Msa1463920:CDS
CTAGACAAATCATGAGCATA+TGG 0.438856 tig0043746:-7807 Msa1463920:intergenic
GAGGATATTTGATTCTTCCT+AGG 0.442821 tig0043746:+7985 Msa1463920:CDS
CTCTCAGTAATAACCTCACC+GGG 0.446512 tig0043746:-3414 Msa1463920:intergenic
CATTTGCTAATTTAATCGCT+TGG 0.448024 tig0043746:-2930 Msa1463920:intergenic
GTCGTCTATGCTGCATATGT+CGG 0.448780 tig0043746:+8691 Msa1463920:CDS
AGGCCACTCTGCTGAAGCTC+TGG 0.449434 tig0043746:-1800 Msa1463920:intergenic
AGGCCACTCTGCTGAAGCTC+TGG 0.449434 tig0043746:-7663 Msa1463920:intergenic
GAATTGTTTGTGAACTCGTT+GGG 0.450040 tig0043746:+3112 Msa1463920:CDS
AGGTACTACTTGTGGGATCC+AGG 0.450761 tig0043746:+2072 Msa1463920:CDS
AACACTGATGAAGATAAGAT+TGG 0.455943 tig0043746:+5852 Msa1463920:CDS
GTCTTCTTAATACAGTTAGT+TGG 0.459997 tig0043746:+5828 Msa1463920:intron
AGCATGAATGGTAGGAAAAG+TGG 0.461977 tig0043746:+384 Msa1463920:five_prime_UTR
TCATCTATGCTGCACATGTC+AGG 0.461997 tig0043746:+2775 Msa1463920:CDS
GTCGGGCGACATTGTAGAAA+AGG 0.463168 tig0043746:+8709 Msa1463920:CDS
TTCTCAAGCACTGAGATGCC+AGG 0.468757 tig0043746:-2979 Msa1463920:intergenic
GTTGAGATCTAGCAGCATCT+AGG 0.468914 tig0043746:-2879 Msa1463920:intergenic
GCAGGTATTGAATGCAATCC+AGG 0.470260 tig0043746:+8427 Msa1463920:intron
ACCTCACCGGGGATCAATAC+AGG 0.471875 tig0043746:-3402 Msa1463920:intergenic
ATGGGAAATACGAGAGCGTT+GGG 0.472269 tig0043746:+1726 Msa1463920:CDS
CGGTACTACTTGTGGAGTCC+AGG 0.473260 tig0043746:+7935 Msa1463920:CDS
TTCTCAAGCACTGAGACGCC+AGG 0.474651 tig0043746:-8906 Msa1463920:intergenic
TTGAGCTCTAGCAGCATCTA+GGG 0.478114 tig0043746:-8805 Msa1463920:intergenic
GCTTGTTTGAATACAATAGC+AGG 0.480470 tig0043746:-8840 Msa1463920:intergenic
AATCATGACAACCTGTTCAC+CGG 0.481221 tig0043746:+7962 Msa1463920:CDS
GAAGCTCACGGTGCACATCT+AGG 0.481340 tig0043746:+2661 Msa1463920:CDS
TCGTCTATGCTGCATATGTC+GGG 0.483647 tig0043746:+8692 Msa1463920:CDS
AGCGGATGAAATCTTATATC+GGG 0.486805 tig0043746:+3083 Msa1463920:CDS
AGTGAAGGTGCTGATATTAG+TGG 0.488793 tig0043746:+3465 Msa1463920:CDS
CAATGGATCAATTGCAGGAA+TGG 0.490219 tig0043746:-3016 Msa1463920:intergenic
GCCGATAAATGACAATTTCG+AGG 0.493005 tig0043746:-2139 Msa1463920:intergenic
TTGAGATCTAGCAGCATCTA+GGG 0.495500 tig0043746:-2878 Msa1463920:intergenic
TTAGATCAGCCCCTTGCTGG+AGG 0.497118 tig0043746:-2711 Msa1463920:intergenic
CCGATAAAAGCCTTTGGACA+TGG 0.500427 tig0043746:-3179 Msa1463920:intergenic
CCTAGCTCAGCCCTCCAGCA+AGG 0.500862 tig0043746:+2700 Msa1463920:CDS
CCTAGCTCAGCCCTCCAGCA+AGG 0.500862 tig0043746:+8617 Msa1463920:CDS
GCATTGCACTGCCAGAATAT+GGG 0.501046 tig0043746:+1708 Msa1463920:CDS
TACATGGAGTAGATAATTGA+CGG 0.501521 tig0043746:-3439 Msa1463920:intergenic
TCAAAGACATGGTTTCTTGT+CGG 0.502260 tig0043746:+2049 Msa1463920:CDS
GTGTCCAGGAAAGTGAAAAC+TGG 0.504005 tig0043746:-7733 Msa1463920:intergenic
GATTCCGTCTTGTTCCTCTC+AGG 0.508131 tig0043746:+624 Msa1463920:CDS
GCTGATAAATGAGAATTCCT+AGG 0.508620 tig0043746:-8002 Msa1463920:intergenic
GCTCGTGATTATATCATCAA+AGG 0.513244 tig0043746:-3274 Msa1463920:intergenic
TCGGGTAAATCATGAGCATA+TGG 0.513396 tig0043746:-1944 Msa1463920:intergenic
TAGTCGGGAATAATGTACTT+AGG 0.513798 tig0043746:-8056 Msa1463920:intergenic
ATGAGTCGAGTCATCGAGGC+AGG 0.515945 tig0043746:-1911 Msa1463920:intergenic
GCACTGCACTACAAGAATAT+GGG 0.516159 tig0043746:+7571 Msa1463920:CDS
GTTGTCAAGTTCAGGAAGCT+CGG 0.516331 tig0043746:-1963 Msa1463920:intergenic
GCATGGCCTCTGTTGTGTCC+AGG 0.516474 tig0043746:-7747 Msa1463920:intergenic
TCCGTCTTTAGGTTGCTGAA+TGG 0.517648 tig0043746:-3232 Msa1463920:intergenic
CTTATTTGTCCATATCCTCC+AGG 0.518004 tig0043746:+3375 Msa1463920:CDS
GATGCCAAAAGCAGGTAACT+AGG 0.520797 tig0043746:-2856 Msa1463920:intergenic
GATGCCAAAAGCAGGTAACT+AGG 0.520797 tig0043746:-8783 Msa1463920:intergenic
TGGTGAATTGCTGAACAAAA+CGG 0.521452 tig0043746:-7643 Msa1463920:intergenic
ATGGGCAAGAAGATAGCATT+GGG 0.525005 tig0043746:+7589 Msa1463920:CDS
TAGTCAGGAACAATGTACTT+AGG 0.526216 tig0043746:-2193 None:intergenic
AACTTAATGAAAAGCATGAA+TGG 0.526298 tig0043746:+372 None:intergenic
CTCGTGATTATATCATCAAA+GGG 0.527399 tig0043746:-3273 Msa1463920:intergenic
TGCTCTCTTAAACAATTCCC+TGG 0.527535 tig0043746:+2961 Msa1463920:CDS
AGGTTGCCATTATTGCTGCC+TGG 0.528356 tig0043746:-2090 Msa1463920:intergenic
CTGCAAATACCATGATAAGT+AGG 0.530759 tig0043746:-2580 Msa1463920:intergenic
GATCCATTGCGGCTTACTGT+TGG 0.532942 tig0043746:+3030 Msa1463920:CDS
CTTGTCGGAGGTACTACTTG+TGG 0.534948 tig0043746:+2064 Msa1463920:CDS
GGAATTGTTTGTGAACTCGT+TGG 0.535480 tig0043746:+3111 Msa1463920:CDS
TAGCTCAGCCCTCCAGCAAG+GGG 0.536029 tig0043746:+2702 Msa1463920:CDS
TAGCTCAGCCCTCCAGCAAG+GGG 0.536029 tig0043746:+8619 Msa1463920:CDS
TTTATCAGCTATATCTGCCA+TGG 0.536681 tig0043746:+8016 Msa1463920:CDS
TTGTCAAGTTCAGGAAGCTC+GGG 0.537006 tig0043746:-1962 Msa1463920:intergenic
CTGCAAACACCATGATAAGT+AGG 0.537109 tig0043746:-8507 Msa1463920:intergenic
ATATCGGCCATGGTATTATC+CGG 0.538000 tig0043746:+2163 Msa1463920:CDS
GCATGGCCTCTGTTATGTCC+AGG 0.538975 tig0043746:-1884 Msa1463920:intergenic
ATGAGTTGAGTCAACGAAGA+AGG 0.542176 tig0043746:-7774 Msa1463920:intergenic
CCCAAAAGCCTACAGTAAGC+CGG 0.544670 tig0043746:-8965 Msa1463920:intergenic
GATCCATTCCGGCTTACTGT+AGG 0.546089 tig0043746:+8947 Msa1463920:CDS
TAGATCAGCCCCTTGCTGGA+GGG 0.546263 tig0043746:-2710 Msa1463920:intergenic
CTACTCCATGTAAGAAGTGA+AGG 0.546727 tig0043746:+3450 Msa1463920:CDS
GCTTTCAATGCACTAACTAA+AGG 0.546743 tig0043746:-1827 Msa1463920:intergenic
AGGTTGTCATGATTGCTGCC+TGG 0.546772 tig0043746:-7953 Msa1463920:intergenic
GGATCAATTGCAGGAATGGT+CGG 0.547650 tig0043746:-3012 Msa1463920:intergenic
TAGATCAGCCCCTTGCTGGA+GGG 0.547734 tig0043746:-8637 Msa1463920:intergenic
TTAGATCAGCCCCTTGCTGG+AGG 0.549611 tig0043746:-8638 Msa1463920:intergenic
AAGCCTACAGTAAGCCGGAA+TGG 0.550487 tig0043746:-8960 Msa1463920:intergenic
ACTTAATCTTGGAACTTGTA+GGG 0.553282 tig0043746:+3155 Msa1463920:CDS
GATAAAGGAGAGCATTGGTA+AGG 0.554559 tig0043746:+3341 Msa1463920:CDS
CATCTAGGGATGCCAAAAGC+AGG 0.554864 tig0043746:-2864 Msa1463920:intergenic
CATCTAGGGATGCCAAAAGC+AGG 0.554864 tig0043746:-8791 Msa1463920:intergenic
TTGATTGTTGATGAAGCTCA+TGG 0.558058 tig0043746:+8566 Msa1463920:CDS
TAATGAAAAGCATGAATGGT+AGG 0.558225 tig0043746:+376 None:intergenic
CTTGTCAACGGTACTACTTG+TGG 0.558448 tig0043746:+7927 Msa1463920:CDS
TATGGGAAATACGAGAGCGT+TGG 0.559578 tig0043746:+1725 Msa1463920:CDS
TGAGCTTCATCAACAATCAA+AGG 0.561205 tig0043746:-8573 Msa1463920:intergenic
TATGGGCAAGAAGATAGCAT+TGG 0.564028 tig0043746:+7588 Msa1463920:CDS
AGCCGGAATGGATCAAATGC+GGG 0.568285 tig0043746:-8948 Msa1463920:intergenic
TCTTTAGGTTGCTGAATGGA+AGG 0.572281 tig0043746:-3228 Msa1463920:intergenic
CGGAAAACAAGATCCAAAGC+AGG 0.575666 tig0043746:+5887 Msa1463920:CDS
CTTGTTTGAATACAATAGCA+GGG 0.576223 tig0043746:-8839 Msa1463920:intergenic
AGATCCAAAGCAGGAAGCTG+TGG 0.578259 tig0043746:+5896 Msa1463920:CDS
TTGAAAGGGGACGACGAGAG+TGG 0.579236 tig0043746:-443 Msa1463920:intergenic
AAACCAACAGTAAGCCGCAA+TGG 0.579462 tig0043746:-3033 Msa1463920:intergenic
GAGACATGGTTTCTTGTCAA+CGG 0.579947 tig0043746:+7915 Msa1463920:CDS
CATAGACGACTGAGTAAGAG+AGG 0.580032 tig0043746:-8688 Msa1463920:intergenic
GGAAGAATAAGAAATTCTCC+TGG 0.582632 tig0043746:-2118 Msa1463920:intergenic
GACAACCTCTTCTGTCCCCA+AGG 0.585276 tig0043746:+1980 Msa1463920:CDS
GGGATCAATACAGGTATACC+TGG 0.585742 tig0043746:-3393 Msa1463920:intergenic
TCTCTCAGTAATAACCTCAC+CGG 0.588463 tig0043746:-3415 Msa1463920:intergenic
AGAGCATTGGTAAGGTTTCG+GGG 0.589661 tig0043746:+3349 Msa1463920:CDS
TGGGCCCTTGGGGACAAAAG+AGG 0.593444 tig0043746:-7848 Msa1463920:intergenic
TCCATTCAGCAACCTAAAGA+CGG 0.595343 tig0043746:+3231 Msa1463920:CDS
GGTATACCTGTATTGATCCC+CGG 0.595466 tig0043746:+3396 Msa1463920:CDS
GCTTTCAATGCACTGACTAG+AGG 0.598480 tig0043746:-7690 Msa1463920:intergenic
GCTTCTAATATGGGCCCTTG+GGG 0.599011 tig0043746:-7858 Msa1463920:intergenic
ATAATGGCAACCTGTTCACC+AGG 0.600507 tig0043746:+2100 Msa1463920:CDS
TTCAATGCACTAACTAAAGG+AGG 0.600852 tig0043746:-1824 Msa1463920:intergenic
GTAACGATAAAGGAGAGCAT+TGG 0.603794 tig0043746:+3336 Msa1463920:CDS
AATGTACTTAGGCACTGCAC+CGG 0.604306 tig0043746:-2182 Msa1463920:intergenic
CACTTTCCTGGACACAACAG+AGG 0.604985 tig0043746:+7741 Msa1463920:CDS
TGTTTGGATCATCAGAGACA+TGG 0.605941 tig0043746:+7901 Msa1463920:CDS
TGTTTGGATCATCAAAGACA+TGG 0.608692 tig0043746:+2038 Msa1463920:CDS
GTGAACTGCTGCATTCATTG+GGG 0.608779 tig0043746:-1778 Msa1463920:intergenic
TTTATCGGCTATATCGGCCA+TGG 0.610715 tig0043746:+2153 Msa1463920:CDS
TTCCTGCAATTGATCCATTG+CGG 0.611741 tig0043746:+3019 Msa1463920:CDS
CTGATTGTTGATGAAGCTCA+CGG 0.614046 tig0043746:+2649 Msa1463920:CDS
ATCCAGGAACTAGAATCTGA+AGG 0.615230 tig0043746:+8443 Msa1463920:CDS
CTTGGTTGAATACAGTATCA+GGG 0.615374 tig0043746:-2912 Msa1463920:intergenic
TCTCAAGCACTGAGATGCCA+GGG 0.617988 tig0043746:-2978 Msa1463920:intergenic
TCATCGAGGCAGGAGCGGCA+TGG 0.619945 tig0043746:-1901 Msa1463920:intergenic
CTTGTAGGGACCATGTCCAA+AGG 0.621624 tig0043746:+3169 Msa1463920:CDS
ATCCAGGAACTCGAATTGGA+AGG 0.621828 tig0043746:+2526 Msa1463920:CDS
ATGTCCAGGAAAGTGAAAAG+TGG 0.622147 tig0043746:-1870 Msa1463920:intergenic
GGAAGAATCAAATATCCTCC+CGG 0.622180 tig0043746:-7981 Msa1463920:intergenic
TGGGTCCTTGGGGACAGAAG+AGG 0.623355 tig0043746:-1985 Msa1463920:intergenic
TCGAGTCATCGAGGCAGGAG+CGG 0.624226 tig0043746:-1906 Msa1463920:intergenic
TTCAATGCACTGACTAGAGG+AGG 0.627877 tig0043746:-7687 Msa1463920:intergenic
ATCATGACAACCTGTTCACC+GGG 0.631148 tig0043746:+7963 Msa1463920:CDS
CACTTTCCTGGACATAACAG+AGG 0.631168 tig0043746:+1878 Msa1463920:CDS
ATGCACTAACTAAAGGAGGT+AGG 0.636092 tig0043746:-1820 Msa1463920:intergenic
AACTGTACAGTCTACTCACA+AGG 0.639033 tig0043746:+8649 Msa1463920:CDS
TGAGCTTCATCAACAATCAG+AGG 0.639277 tig0043746:-2646 Msa1463920:intergenic
AAGACATGGTTTCTTGTCGG+AGG 0.641334 tig0043746:+2052 Msa1463920:CDS
GCTTCTAATATGGGTCCTTG+GGG 0.641541 tig0043746:-1995 Msa1463920:intergenic
AAGCCGGAATGGATCAAATG+CGG 0.644215 tig0043746:-8949 Msa1463920:intergenic
TCTCAAGCACTGAGACGCCA+GGG 0.645174 tig0043746:-8905 Msa1463920:intergenic
TTGAGTCAACGAAGAAGGAG+CGG 0.647939 tig0043746:-7769 Msa1463920:intergenic
AACAGTACAGTCTACTCACA+AGG 0.650174 tig0043746:+2732 Msa1463920:CDS
TCAACGAAGAAGGAGCGGCA+TGG 0.650898 tig0043746:-7764 Msa1463920:intergenic
ACCTGTATTGATCCCCGGTG+AGG 0.653105 tig0043746:+3401 Msa1463920:CDS
ATGCACTGACTAGAGGAGGT+AGG 0.654549 tig0043746:-7683 Msa1463920:intergenic
AATGATTGGGACATCGCTGG+TGG 0.654948 tig0043746:+8083 Msa1463920:CDS
TCACCAGAGCTTCAGCAGAG+TGG 0.657824 tig0043746:+1797 Msa1463920:CDS
ACAACTATAGAAGAAAGTAA+GGG 0.663858 tig0043746:-3498 Msa1463920:intergenic
AAGCAGGTAACTAGGACTTG+TGG 0.664545 tig0043746:-2848 Msa1463920:intergenic
TCACCAGAGCTTCAGCAGAG+TGG 0.667500 tig0043746:+7660 Msa1463920:CDS
GAGCATTGGTAAGGTTTCGG+GGG 0.674611 tig0043746:+3350 Msa1463920:CDS
TCCAATGAGTCGAGTCATCG+AGG 0.679421 tig0043746:-1915 Msa1463920:intergenic
CACTGCACCAGATAAAACCA+TGG 0.680585 tig0043746:-8033 Msa1463920:intergenic
CACTGCACCGGATAATACCA+TGG 0.689114 tig0043746:-2170 Msa1463920:intergenic
AGAAATGAAGGAGACCTGAG+AGG 0.690019 tig0043746:-638 Msa1463920:intergenic
ATCAATACAGGTATACCTGG+AGG 0.690812 tig0043746:-3390 Msa1463920:intergenic
TGGGTTATCAGGTTACGAAG+CGG 0.691347 tig0043746:+3065 Msa1463920:CDS
GAGACCTGAGAGGAACAAGA+CGG 0.694609 tig0043746:-628 Msa1463920:intergenic
ATGACAACCTGTTCACCGGG+AGG 0.702047 tig0043746:+7966 Msa1463920:CDS
AATGATTGGGACATCGCTGG+TGG 0.722880 tig0043746:+2220 Msa1463920:CDS
TCTCAGTAATAACCTCACCG+GGG 0.800637 tig0043746:-3413 Msa1463910:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTATTTATATATATATAT+AGG - tig0043746:6863-6882 Msa1463920:intergenic 0.0%
!! TATAAATAATTTATAAAATT+TGG + tig0043746:6872-6891 Msa1463920:intron 0.0%
!! ATATAAATTTCTAATCATAT+AGG - tig0043746:1294-1313 Msa1463920:intergenic 10.0%
!! ACAAAAAAAAAAAAAAAGAT+TGG - tig0043746:4049-4068 Msa1463920:intergenic 10.0%
!!! TTTTTTTTTTTTGTTCAAAT+TGG + tig0043746:4055-4074 Msa1463920:intron 10.0%
!!! TTTTGTATTTTATTTTAAAG+AGG + tig0043746:5127-5146 Msa1463920:intron 10.0%
!!! ACTATTTAATTCATTTTTTT+TGG - tig0043746:5733-5752 Msa1463920:intergenic 10.0%
!!! GTATTTAAAATAAGAAATGA+AGG - tig0043746:653-672 Msa1463920:intergenic 15.0%
!!! CATTTTTTTCAAATTATCAT+CGG - tig0043746:1057-1076 Msa1463920:intergenic 15.0%
!! ATATAATTTAGTGTAATCAT+AGG + tig0043746:1077-1096 Msa1463920:intron 15.0%
!!! AATTTTTAATGTAGTTTAGT+TGG + tig0043746:1346-1365 Msa1463920:intron 15.0%
!!! ATTTTTAATGTAGTTTAGTT+GGG + tig0043746:1347-1366 Msa1463920:intron 15.0%
!! TAGATAAAGAAAAAATATCT+AGG + tig0043746:2806-2825 Msa1463920:CDS 15.0%
!! AAATATTTAAACATCCAATA+AGG - tig0043746:3793-3812 Msa1463920:intergenic 15.0%
!! TTATTGGATGTTTAAATATT+TGG + tig0043746:3792-3811 Msa1463920:intron 15.0%
!! ATTACATTAAAAACTAAACA+AGG - tig0043746:4472-4491 Msa1463920:intergenic 15.0%
!! AATTAAATAATAAAGAAACG+AGG - tig0043746:4732-4751 Msa1463920:intergenic 15.0%
!!! TACAAACATATTTTAAATCA+CGG + tig0043746:4830-4849 Msa1463920:intron 15.0%
!! ATATATATGACAAACAAAAT+AGG - tig0043746:4920-4939 Msa1463920:intergenic 15.0%
!! TAAAAAATAGAAAAAGTTCT+TGG + tig0043746:4950-4969 Msa1463920:intron 15.0%
!! AGGAAAATAGTAAATAAAAA+AGG - tig0043746:6048-6067 Msa1463920:intergenic 15.0%
!! AAAGTATAATATGTTGAATT+GGG - tig0043746:6349-6368 Msa1463920:intergenic 15.0%
!!! TTTTTTTAATAAGTGTGAAA+TGG + tig0043746:6449-6468 Msa1463920:intron 15.0%
!! TATATTCTTTCTAATAACTT+TGG - tig0043746:6802-6821 Msa1463920:intergenic 15.0%
!! TATTTAAATCTATGATATCA+TGG - tig0043746:7226-7245 Msa1463920:intergenic 15.0%
!! TAATATTATGACAGTAAAAT+TGG + tig0043746:7247-7266 Msa1463920:intron 15.0%
!! TTAAAAATGTCTAATTGTAT+TGG - tig0043746:7371-7390 Msa1463920:intergenic 15.0%
!!! TCTTTAAATTACTATTTTAC+AGG + tig0043746:7542-7561 Msa1463920:intron 15.0%
!! TATTATATACTAATACATTG+TGG + tig0043746:8132-8151 Msa1463920:intron 15.0%
!! AAACACATACATATGATAAA+CGG - tig0043746:722-741 Msa1463920:intergenic 20.0%
!!! TTTTTAATGTAGTTTAGTTG+GGG + tig0043746:1348-1367 Msa1463920:intron 20.0%
!!! ACAACATTTCATTTTAATTC+AGG - tig0043746:1589-1608 Msa1463920:intergenic 20.0%
!! TATTATACACTATCACAATT+TGG + tig0043746:2272-2291 Msa1463920:intron 20.0%
!! TAAAAGAAAAGTAACGATAA+AGG + tig0043746:3326-3345 Msa1463920:CDS 20.0%
!! TTTATCAATTATTATGAGAC+CGG - tig0043746:3545-3564 Msa1463920:intergenic 20.0%
!!! TAGATTTTCTCTAATTTGAA+TGG + tig0043746:3639-3658 Msa1463920:intron 20.0%
!! TTGACAACAGTATAAAAATA+TGG - tig0043746:4998-5017 Msa1463920:intergenic 20.0%
!! TTCTATATATAGAGATTAGT+TGG + tig0043746:5524-5543 Msa1463920:intron 20.0%
!! ATAACTATTTATTTACAGCT+AGG + tig0043746:5622-5641 Msa1463920:intron 20.0%
!! ATAGTAAATAAAAAAGGAAC+AGG - tig0043746:6042-6061 Msa1463920:intergenic 20.0%
!! AAAACTATATGGAAACATTA+AGG - tig0043746:6113-6132 Msa1463920:intergenic 20.0%
!! TATTGTATTGAAAAGTGAAA+TGG - tig0043746:6275-6294 Msa1463920:intergenic 20.0%
!! CAAAGTATAATATGTTGAAT+TGG - tig0043746:6350-6369 Msa1463920:intergenic 20.0%
!! GAAACTTCATATCTATAATA+TGG - tig0043746:6508-6527 Msa1463920:intergenic 20.0%
!!! TATTTTTAGACATTTTTTCC+TGG - tig0043746:6928-6947 Msa1463920:intergenic 20.0%
!! AATGTCTAAAAATAGATAGT+TGG + tig0043746:6934-6953 Msa1463920:intron 20.0%
!!! ATTAAGATAAGATTTGGTAA+GGG + tig0043746:6976-6995 Msa1463920:intron 20.0%
!! AAAATGCAGAAAAATGAAAT+AGG - tig0043746:7106-7125 Msa1463920:intergenic 20.0%
!!! TTTTTCTCCCTATATAATAA+TGG + tig0043746:7167-7186 Msa1463920:intron 20.0%
!! AAACAGTCCATTATTATATA+GGG - tig0043746:7177-7196 Msa1463920:intergenic 20.0%
!! AAAACAGTCCATTATTATAT+AGG - tig0043746:7178-7197 Msa1463920:intergenic 20.0%
!!! ACAACATTTCATTTTATTTC+AGG - tig0043746:7449-7468 Msa1463920:intergenic 20.0%
!! AATATCTAAATTACCTGTAA+TGG - tig0043746:8116-8135 Msa1463920:intergenic 20.0%
!!! AAATTGATGGTAAAAGAAAT+TGG + tig0043746:8168-8187 Msa1463920:intron 20.0%
!!! AATCTATTTAGATTGCTTTT+TGG - tig0043746:8241-8260 Msa1463920:intergenic 20.0%
!! AATGTCTAATATCAATATCA+AGG - tig0043746:8328-8347 Msa1463920:intergenic 20.0%
!! TAGAAAAGGAAAAAATATCT+AGG + tig0043746:8723-8742 Msa1463920:CDS 20.0%
!! GTATGTGTTTCTGTATATAT+AGG + tig0043746:870-889 Msa1463920:intron 25.0%
!! AATAAGCTGAAAACAACTTT+TGG + tig0043746:974-993 Msa1463920:intron 25.0%
!! ATATCTTTTTACCTTAGTCT+TGG - tig0043746:1244-1263 Msa1463920:intergenic 25.0%
! AAGACTAAGGTAAAAAGATA+TGG + tig0043746:1243-1262 Msa1463920:intron 25.0%
! AGACTAAGGTAAAAAGATAT+GGG + tig0043746:1244-1263 Msa1463920:intron 25.0%
! TTGTGTATAATACACCAAAA+TGG - tig0043746:1445-1464 Msa1463920:intergenic 25.0%
! TTCCTGACTATAAAAATGAT+TGG + tig0043746:2206-2225 Msa1463920:CDS 25.0%
! TCCTGACTATAAAAATGATT+GGG + tig0043746:2207-2226 Msa1463920:CDS 25.0%
!! TGGCTATATTCTCTAAAAAT+TGG + tig0043746:2292-2311 Msa1463920:intron 25.0%
! AGTAAGAAAATCATGTAATC+AGG - tig0043746:2374-2393 Msa1463920:intergenic 25.0%
! AATATCTAATATCATTGTCG+AGG - tig0043746:2399-2418 Msa1463920:intergenic 25.0%
! ACAACTATAGAAGAAAGTAA+GGG - tig0043746:3501-3520 Msa1463920:intergenic 25.0%
!! TGTTTAAAATGACTCCTTAT+TGG + tig0043746:3776-3795 Msa1463920:intron 25.0%
!! AAGCTACAATTTGTAACTTT+TGG - tig0043746:3863-3882 Msa1463920:intergenic 25.0%
!! TTTACAGATTTCTAAGTTGA+CGG + tig0043746:3951-3970 Msa1463920:intron 25.0%
! GAATCTTGTAAATGAAATGT+TGG + tig0043746:4001-4020 Msa1463920:intron 25.0%
! ATATGAACGTTAACAATTCT+TGG + tig0043746:4115-4134 Msa1463920:intron 25.0%
!! ATGATAATGAGAATCAACAA+TGG + tig0043746:4601-4620 Msa1463920:intron 25.0%
!!! TATGATACCTACTTTTATAC+TGG - tig0043746:5160-5179 Msa1463920:intergenic 25.0%
! CACTATCATTAAGAAATTGT+AGG + tig0043746:5204-5223 Msa1463920:intron 25.0%
! TTACGATTAGACTAAATGTT+TGG - tig0043746:5333-5352 Msa1463920:intergenic 25.0%
! TGAATGATGAAATTATAGAG+AGG + tig0043746:5391-5410 Msa1463920:intron 25.0%
! GAATGATGAAATTATAGAGA+GGG + tig0043746:5392-5411 Msa1463920:intron 25.0%
! ATATGGAAACATTAAGGAAA+TGG - tig0043746:6107-6126 Msa1463920:intergenic 25.0%
! AAACGTGTTGAAAAACTATA+TGG - tig0043746:6124-6143 Msa1463920:intergenic 25.0%
!!! TATAGTTTTTCAACACGTTT+AGG + tig0043746:6124-6143 Msa1463920:intron 25.0%
!!! GAATGACTTTTTCTCTAAAT+AGG + tig0043746:6176-6195 Msa1463920:intron 25.0%
!!! GGACAATATTTTTTTGCAAA+TGG - tig0043746:6239-6258 Msa1463920:intergenic 25.0%
! TAGATATGAAGTTTCCAATA+CGG + tig0043746:6513-6532 Msa1463920:intron 25.0%
! AAAGTCTAACCATTTGATTA+AGG + tig0043746:6634-6653 Msa1463920:intron 25.0%
! AAGTCTAACCATTTGATTAA+GGG + tig0043746:6635-6654 Msa1463920:intron 25.0%
!!! AGTTGGTAACGTTTATATAT+AGG + tig0043746:6951-6970 Msa1463920:intron 25.0%
!!! GTTGGTAACGTTTATATATA+GGG + tig0043746:6952-6971 Msa1463920:intron 25.0%
!!! TTGGTAACGTTTATATATAG+GGG + tig0043746:6953-6972 Msa1463920:intron 25.0%
!! GATTAAGATAAGATTTGGTA+AGG + tig0043746:6975-6994 Msa1463920:intron 25.0%
! AAAATGAAATAGGAAGTGAA+GGG - tig0043746:7096-7115 Msa1463920:intergenic 25.0%
! AAAAATGAAATAGGAAGTGA+AGG - tig0043746:7097-7116 Msa1463920:intergenic 25.0%
!! AAGAAATTCCATTGTTTCTT+TGG + tig0043746:7132-7151 Msa1463920:intron 25.0%
! ATAAGAATCCAAAGAAACAA+TGG - tig0043746:7143-7162 Msa1463920:intergenic 25.0%
!! ACTGTTTTATCTCTCAATAA+TGG + tig0043746:7190-7209 Msa1463920:intron 25.0%
! TGAGAAATAACAAGTTAACT+AGG + tig0043746:7282-7301 Msa1463920:intron 25.0%
!! TTTTAAACGGAGTTTAATTG+AGG + tig0043746:7406-7425 Msa1463920:intron 25.0%
! CAGTAAAAAGTTACTTAATC+AGG - tig0043746:8304-8323 Msa1463920:intergenic 25.0%
! AGAACATTAAATAGGATTAC+CGG - tig0043746:8370-8389 Msa1463920:intergenic 25.0%
! AGAAAGAGAGAACATTAAAT+AGG - tig0043746:8378-8397 Msa1463920:intergenic 25.0%
!!! TTGGATTTTTGGGATTGAAA+GGG - tig0043746:460-479 Msa1463920:intergenic 30.0%
!!! TTTGGATTTTTGGGATTGAA+AGG - tig0043746:461-480 Msa1463920:intergenic 30.0%
TCAATCCCAAAAATCCAAAA+CGG + tig0043746:462-481 Msa1463920:CDS 30.0%
!! GAAAACCGTTTTGGATTTTT+GGG - tig0043746:470-489 Msa1463920:intergenic 30.0%
!! TGAAAACCGTTTTGGATTTT+TGG - tig0043746:471-490 Msa1463920:intergenic 30.0%
GTTAGCACTTACTGAAAAAT+GGG - tig0043746:498-517 Msa1463920:intergenic 30.0%
! AGAAGAAGAAAGAGATTTTG+TGG - tig0043746:520-539 Msa1463920:intergenic 30.0%
! TTCCTTTTCTGTTTATTTGC+AGG + tig0043746:564-583 Msa1463920:intron 30.0%
! TCCTTTTCTGTTTATTTGCA+GGG + tig0043746:565-584 Msa1463920:intron 30.0%
GTCCTTACAAATTGAATTTC+AGG + tig0043746:590-609 Msa1463920:CDS 30.0%
GTCCTGAAATTCAATTTGTA+AGG - tig0043746:595-614 Msa1463920:intergenic 30.0%
TAATAGCTTATGTACACGTT+TGG + tig0043746:679-698 Msa1463920:intron 30.0%
AATAGCTTATGTACACGTTT+GGG + tig0043746:680-699 Msa1463920:intron 30.0%
TTTCAAATTATCATCGGTGT+TGG - tig0043746:1051-1070 Msa1463920:intergenic 30.0%
! GGGTAATAAGATTAGCTAAA+GGG + tig0043746:1368-1387 Msa1463920:intron 30.0%
GTATAATACACCAAAATGGT+CGG - tig0043746:1441-1460 Msa1463920:intergenic 30.0%
TCTGTTTGTGCTTCTAATAT+GGG - tig0043746:2007-2026 Msa1463920:intergenic 30.0%
TTCTGTTTGTGCTTCTAATA+TGG - tig0043746:2008-2027 Msa1463920:intergenic 30.0%
! CTTTGATGATCCAAACAATT+TGG - tig0043746:2035-2054 Msa1463920:intergenic 30.0%
! TCCTCGAAATTGTCATTTAT+CGG + tig0043746:2138-2157 Msa1463920:CDS 30.0%
! TTGTCATTTATCGGCTATAT+CGG + tig0043746:2147-2166 Msa1463920:CDS 30.0%
!! TCCCAATCATTTTTATAGTC+AGG - tig0043746:2211-2230 Msa1463920:intergenic 30.0%
AATAACTGAATCACCTGTAA+TGG - tig0043746:2253-2272 Msa1463920:intergenic 30.0%
GAAAGAGAACAACATTAGAT+AGG - tig0043746:2449-2468 Msa1463920:intergenic 30.0%
! TTTTCTTCTTTCTTTTCCTG+TGG + tig0043746:2479-2498 Msa1463920:intron 30.0%
! CAACAATCAGAGGAATTTTA+CGG - tig0043746:2639-2658 Msa1463920:intergenic 30.0%
! CATTTGCTAATTTAATCGCT+TGG - tig0043746:2933-2952 Msa1463920:intergenic 30.0%
AAGCGGATGAAATCTTATAT+CGG + tig0043746:3082-3101 Msa1463920:CDS 30.0%
GAAATCTTATATCGGGATTT+CGG + tig0043746:3090-3109 Msa1463920:CDS 30.0%
ATCACTTATGCACTTAATCT+TGG + tig0043746:3144-3163 Msa1463920:CDS 30.0%
ACTTAATCTTGGAACTTGTA+GGG + tig0043746:3155-3174 Msa1463920:CDS 30.0%
CTCGTGATTATATCATCAAA+GGG - tig0043746:3276-3295 Msa1463920:intergenic 30.0%
TACATGGAGTAGATAATTGA+CGG - tig0043746:3442-3461 Msa1463920:intergenic 30.0%
GACAACTATAGAAGAAAGTA+AGG - tig0043746:3502-3521 Msa1463920:intergenic 30.0%
!! ATATCAAAAGCGTTGAAATC+TGG - tig0043746:3709-3728 Msa1463920:intergenic 30.0%
! AGATTTCAACGCTTTTGATA+TGG + tig0043746:3708-3727 Msa1463920:intron 30.0%
TTGATATGGTTCAGAATCAT+TGG + tig0043746:3722-3741 Msa1463920:intron 30.0%
TGAAATATCATGAAACTGTG+AGG - tig0043746:3830-3849 Msa1463920:intergenic 30.0%
! AACTTAGCATGTGTTTGTTT+TGG - tig0043746:3914-3933 Msa1463920:intergenic 30.0%
ATATATTGTAAGTCACCTCA+TGG + tig0043746:4159-4178 Msa1463920:intron 30.0%
TAAATAAGACGACTATTTGG+GGG - tig0043746:4256-4275 Msa1463920:intergenic 30.0%
CTAAATAAGACGACTATTTG+GGG - tig0043746:4257-4276 Msa1463920:intergenic 30.0%
CCTAAATAAGACGACTATTT+GGG - tig0043746:4258-4277 Msa1463920:intergenic 30.0%
TCCTAAATAAGACGACTATT+TGG - tig0043746:4259-4278 Msa1463920:intergenic 30.0%
! AATGGTCGATAAGATCATTT+TGG + tig0043746:4619-4638 Msa1463920:intron 30.0%
CTAACTCCATTCAAATATGA+TGG + tig0043746:4872-4891 Msa1463920:intron 30.0%
! GAAGTACCATCATATTTGAA+TGG - tig0043746:4881-4900 Msa1463920:intergenic 30.0%
!!! ACCTACTTTTATACTGGTTT+CGG - tig0043746:5154-5173 Msa1463920:intergenic 30.0%
AATAGTGTAAAATAGCAGTG+AGG + tig0043746:5747-5766 Msa1463920:intron 30.0%
GTCTTCTTAATACAGTTAGT+TGG + tig0043746:5828-5847 Msa1463920:intron 30.0%
AACACTGATGAAGATAAGAT+TGG + tig0043746:5852-5871 Msa1463920:CDS 30.0%
GAAGAAGAAGAAGAAGAAAA+TGG + tig0043746:5930-5949 Msa1463920:CDS 30.0%
! ATAGATACTTGATGATACAG+TGG + tig0043746:6147-6166 Msa1463920:intron 30.0%
GCAAATGGCTAAGTTATTAT+GGG - tig0043746:6224-6243 Msa1463920:intergenic 30.0%
TGCAAATGGCTAAGTTATTA+TGG - tig0043746:6225-6244 Msa1463920:intergenic 30.0%
TTGCAAAAAAATATTGTCCC+AGG + tig0043746:6240-6259 Msa1463920:intron 30.0%
! TGAAATGGATCAATTTTCCT+GGG - tig0043746:6260-6279 Msa1463920:intergenic 30.0%
ATAATATGTTGAATTGGGAG+TGG - tig0043746:6344-6363 Msa1463920:intergenic 30.0%
AAGTGAAAGAGAGAGAAAAA+TGG - tig0043746:6422-6441 Msa1463920:intergenic 30.0%
!! AATAAGTGTGAAATGGACTA+AGG + tig0043746:6456-6475 Msa1463920:intron 30.0%
!! ATAAGTGTGAAATGGACTAA+GGG + tig0043746:6457-6476 Msa1463920:intron 30.0%
! ACTAAGGGCTCATTTAAAAT+GGG + tig0043746:6472-6491 Msa1463920:intron 30.0%
TAATCACAGTTAAACCGTAT+TGG - tig0043746:6530-6549 Msa1463920:intergenic 30.0%
ATTTGGATCCCTTAATCAAA+TGG - tig0043746:6646-6665 Msa1463920:intergenic 30.0%
ATAAAATTTGGCGATGCATA+TGG + tig0043746:6884-6903 Msa1463920:intron 30.0%
TAGGGGATTAAGATAAGATT+TGG + tig0043746:6970-6989 Msa1463920:intron 30.0%
AAATGAAATAGGAAGTGAAG+GGG - tig0043746:7095-7114 Msa1463920:intergenic 30.0%
TCAAAATGAGGAAATACTGA+TGG - tig0043746:7476-7495 Msa1463920:intergenic 30.0%
TCTCTTTGTGCTTCTAATAT+GGG - tig0043746:7870-7889 Msa1463920:intergenic 30.0%
TTCTCTTTGTGCTTCTAATA+TGG - tig0043746:7871-7890 Msa1463920:intergenic 30.0%
TTCCCGACTATAAAAATGAT+TGG + tig0043746:8069-8088 Msa1463920:CDS 30.0%
TCCCGACTATAAAAATGATT+GGG + tig0043746:8070-8089 Msa1463920:CDS 30.0%
!! TCCCAATCATTTTTATAGTC+GGG - tig0043746:2211-2230 Msa1463920:intergenic 30.0%
!! GTCCCAATCATTTTTATAGT+CGG - tig0043746:2212-2231 Msa1463920:intergenic 30.0%
CTACATTTGCGAAAAATTGA+TGG + tig0043746:8155-8174 Msa1463920:intron 30.0%
TGATGGTAAAAGAAATTGGA+AGG + tig0043746:8172-8191 Msa1463920:intron 30.0%
CTTGTTTGAATACAATAGCA+GGG - tig0043746:8832-8851 Msa1463920:intergenic 30.0%
! TGCTTCATTTGCTAATTCAA+TGG - tig0043746:8855-8874 Msa1463920:intergenic 30.0%
! TTTTTGCTAAAAAGAATCCC+TGG + tig0043746:8878-8897 Msa1463920:CDS 30.0%
GTAGGAAAAGTGGAAGAAAA+TGG + tig0043746:394-413 Msa1463920:exon 35.0%
!!! TGGATTTTTGGGATTGAAAG+GGG - tig0043746:459-478 Msa1463920:intergenic 35.0%
GGTTAGCACTTACTGAAAAA+TGG - tig0043746:499-518 Msa1463920:intergenic 35.0%
TCCCTGCAAATAAACAGAAA+AGG - tig0043746:569-588 Msa1463920:intergenic 35.0%
!! ATGTGTTTTTGTAACCCACT+TGG + tig0043746:734-753 Msa1463920:intron 35.0%
!! TGTGTTTTTGTAACCCACTT+GGG + tig0043746:735-754 Msa1463920:intron 35.0%
CTAAATTAGCCCACCTAAAT+TGG - tig0043746:835-854 Msa1463920:intergenic 35.0%
!! GCTGTTTTCATAAGCTATTC+TGG + tig0043746:939-958 Msa1463920:intron 35.0%
TAAACACTTGTGAGACTGTT+TGG - tig0043746:1169-1188 Msa1463920:intergenic 35.0%
ATGGGCGTAAAATTGATCTT+TGG + tig0043746:1262-1281 Msa1463920:intron 35.0%
! GGGGTAATAAGATTAGCTAA+AGG + tig0043746:1367-1386 Msa1463920:intron 35.0%
CTTGTGTAAAAAACAGGGTA+AGG - tig0043746:1468-1487 Msa1463920:intergenic 35.0%
!!! TACCCTGTTTTTTACACAAG+AGG + tig0043746:1468-1487 Msa1463920:intron 35.0%
AGCCTCTTGTGTAAAAAACA+GGG - tig0043746:1473-1492 Msa1463920:intergenic 35.0%
TAGCTAATCTTATTACCCGA+GGG - tig0043746:1564-1583 Msa1463920:intergenic 35.0%
TCATAATGAGGCAGTACTAA+TGG - tig0043746:1616-1635 Msa1463920:intergenic 35.0%
ATTGCAATGAAGGATAGTGT+AGG - tig0043746:1639-1658 Msa1463920:intergenic 35.0%
TACACTATCCTTCATTGCAA+TGG + tig0043746:1638-1657 Msa1463920:intron 35.0%
ACACTATCCTTCATTGCAAT+GGG + tig0043746:1639-1658 Msa1463920:intron 35.0%
TTCAATGCACTAACTAAAGG+AGG - tig0043746:1827-1846 Msa1463920:intergenic 35.0%
GCTTTCAATGCACTAACTAA+AGG - tig0043746:1830-1849 Msa1463920:intergenic 35.0%
TGTTTGGATCATCAAAGACA+TGG + tig0043746:2038-2057 Msa1463920:CDS 35.0%
TCAAAGACATGGTTTCTTGT+CGG + tig0043746:2049-2068 Msa1463920:CDS 35.0%
GGAAGAATAAGAAATTCTCC+TGG - tig0043746:2121-2140 Msa1463920:intergenic 35.0%
TAGTCAGGAACAATGTACTT+AGG - tig0043746:2196-2215 Msa1463920:intergenic 35.0%
ATCACTTCACCTACTTATCA+TGG + tig0043746:2571-2590 Msa1463920:CDS 35.0%
CTGCAAATACCATGATAAGT+AGG - tig0043746:2583-2602 Msa1463920:intergenic 35.0%
CTTGGTTGAATACAGTATCA+GGG - tig0043746:2915-2934 Msa1463920:intergenic 35.0%
AGCGGATGAAATCTTATATC+GGG + tig0043746:3083-3102 Msa1463920:CDS 35.0%
GAATTGTTTGTGAACTCGTT+GGG + tig0043746:3112-3131 Msa1463920:CDS 35.0%
CACTTAATCTTGGAACTTGT+AGG + tig0043746:3154-3173 Msa1463920:CDS 35.0%
TTATTCCCGATAAAAGCCTT+TGG - tig0043746:3188-3207 Msa1463920:intergenic 35.0%
GCTCGTGATTATATCATCAA+AGG - tig0043746:3277-3296 Msa1463920:intergenic 35.0%
TTGCAAAAAATGCATCTCTG+GGG - tig0043746:3305-3324 Msa1463920:intergenic 35.0%
CTTGCAAAAAATGCATCTCT+GGG - tig0043746:3306-3325 Msa1463920:intergenic 35.0%
ACTTGCAAAAAATGCATCTC+TGG - tig0043746:3307-3326 Msa1463920:intergenic 35.0%
ACACAGCTGAAGAAATTCTT+AGG + tig0043746:3571-3590 Msa1463920:intron 35.0%
AACTAACTGAATGCCAGAAA+TGG + tig0043746:3603-3622 Msa1463920:intron 35.0%
TCACTAGACAAAATTCAGTG+TGG - tig0043746:3679-3698 Msa1463920:intergenic 35.0%
AATATCATGAAACTGTGAGG+TGG - tig0043746:3827-3846 Msa1463920:intergenic 35.0%
!! AAAGATTGGCTCTAATAGCT+CGG - tig0043746:4035-4054 Msa1463920:intergenic 35.0%
TGTTAACGTTCATATCCACA+AGG - tig0043746:4110-4129 Msa1463920:intergenic 35.0%
! GAGAACTATAAGTTTCGAGT+TGG - tig0043746:4191-4210 Msa1463920:intergenic 35.0%
ACTTATAGTTCTCCTTATGC+TGG + tig0043746:4198-4217 Msa1463920:intron 35.0%
AAATAAGACGACTATTTGGG+GGG - tig0043746:4255-4274 Msa1463920:intergenic 35.0%
!! CCCAAATAGTCGTCTTATTT+AGG + tig0043746:4255-4274 Msa1463920:intron 35.0%
CATCATCTGAACCATAACTA+AGG + tig0043746:4319-4338 Msa1463920:intron 35.0%
ACCTTAGATGAAGATAACGT+GGG - tig0043746:4768-4787 Msa1463920:intergenic 35.0%
TACCTTAGATGAAGATAACG+TGG - tig0043746:4769-4788 Msa1463920:intergenic 35.0%
! TGCTCGTATTTTGTGTTTGT+TGG - tig0043746:4805-4824 Msa1463920:intergenic 35.0%
ACCGAAACCAGTATAAAAGT+AGG + tig0043746:5150-5169 Msa1463920:intron 35.0%
GATGAAATTATAGAGAGGGT+AGG + tig0043746:5396-5415 Msa1463920:intron 35.0%
AAGAGCAAAGAGTAATCTTG+TGG + tig0043746:5668-5687 Msa1463920:intron 35.0%
!! AAGATTGGTTTAGCCCTTTA+CGG + tig0043746:5867-5886 Msa1463920:CDS 35.0%
!!! TGGATCTTGTTTTCCGTAAA+GGG - tig0043746:5883-5902 Msa1463920:intergenic 35.0%
!!! TTGGATCTTGTTTTCCGTAA+AGG - tig0043746:5884-5903 Msa1463920:intergenic 35.0%
AAAAAGGAACAGGAAGTGAA+GGG - tig0043746:6032-6051 Msa1463920:intergenic 35.0%
AAAAAAGGAACAGGAAGTGA+AGG - tig0043746:6033-6052 Msa1463920:intergenic 35.0%
TTCCTATCACATTGCTTCTT+TGG + tig0043746:6063-6082 Msa1463920:intron 35.0%
ATCCAAAGAAGCAATGTGAT+AGG - tig0043746:6068-6087 Msa1463920:intergenic 35.0%
! ATACTTGATGATACAGTGGT+TGG + tig0043746:6151-6170 Msa1463920:intron 35.0%
CTAAGTTATTATGGGAAGGA+GGG - tig0043746:6216-6235 Msa1463920:intergenic 35.0%
ATGGCTAAGTTATTATGGGA+AGG - tig0043746:6220-6239 Msa1463920:intergenic 35.0%
! GTGAAATGGATCAATTTTCC+TGG - tig0043746:6261-6280 Msa1463920:intergenic 35.0%
AGAATGCACCAATAGTTGAT+AGG + tig0043746:6385-6404 Msa1463920:intron 35.0%
! GAATGCACCAATAGTTGATA+GGG + tig0043746:6386-6405 Msa1463920:intron 35.0%
!! AATGCACCAATAGTTGATAG+GGG + tig0043746:6387-6406 Msa1463920:intron 35.0%
GACTAAGGGCTCATTTAAAA+TGG + tig0043746:6471-6490 Msa1463920:intron 35.0%
TATAGGGAAATTGGTTGTCT+GGG - tig0043746:6676-6695 Msa1463920:intergenic 35.0%
TTATAGGGAAATTGGTTGTC+TGG - tig0043746:6677-6696 Msa1463920:intergenic 35.0%
! GCGCATTTTTATAGGGAAAT+TGG - tig0043746:6685-6704 Msa1463920:intergenic 35.0%
TTCCTTGAGACATGTTAGTT+GGG - tig0043746:6710-6729 Msa1463920:intergenic 35.0%
TGGTAAGGGAAGCAATAAAA+TGG + tig0043746:6990-7009 Msa1463920:intron 35.0%
AATGAAATAGGAAGTGAAGG+GGG - tig0043746:7094-7113 Msa1463920:intergenic 35.0%
TGGTGAATTGCTGAACAAAA+CGG - tig0043746:7646-7665 Msa1463920:intergenic 35.0%
CTAGACAAATCATGAGCATA+TGG - tig0043746:7810-7829 Msa1463920:intergenic 35.0%
GAGGATATTTGATTCTTCCT+AGG + tig0043746:7985-8004 Msa1463920:CDS 35.0%
GCTGATAAATGAGAATTCCT+AGG - tig0043746:8005-8024 Msa1463920:intergenic 35.0%
TTTATCAGCTATATCTGCCA+TGG + tig0043746:8016-8035 Msa1463920:CDS 35.0%
!!! ATATCTGCCATGGTTTTATC+TGG + tig0043746:8026-8045 Msa1463920:CDS 35.0%
TAGTCGGGAATAATGTACTT+AGG - tig0043746:8059-8078 Msa1463920:intergenic 35.0%
TCTCTCTTTCTTTATGTGTG+TGG + tig0043746:8387-8406 Msa1463920:intron 35.0%
CTCTCTTTCTTTATGTGTGT+GGG + tig0043746:8388-8407 Msa1463920:intron 35.0%
CTTTATGTGTGTGGGATTAA+CGG + tig0043746:8396-8415 Msa1463920:intron 35.0%
TTTATGTGTGTGGGATTAAC+GGG + tig0043746:8397-8416 Msa1463920:intron 35.0%
ATCACTTCACCTACTTATCA+TGG + tig0043746:2571-2590 Msa1463920:CDS 35.0%
TGAGCTTCATCAACAATCAA+AGG - tig0043746:8566-8585 Msa1463920:intergenic 35.0%
! TTGATTGTTGATGAAGCTCA+TGG + tig0043746:8566-8585 Msa1463920:CDS 35.0%
GCTTGTTTGAATACAATAGC+AGG - tig0043746:8833-8852 Msa1463920:intergenic 35.0%
AGCATGAATGGTAGGAAAAG+TGG + tig0043746:384-403 Msa1463920:five_prime_UTR 40.0%
GCACTTACTGAAAAATGGGA+AGG - tig0043746:494-513 Msa1463920:intergenic 40.0%
ACGTTCTAACGAAGACTGTT+TGG - tig0043746:1221-1240 Msa1463920:intergenic 40.0%
CAGCCTCTTGTGTAAAAAAC+AGG - tig0043746:1474-1493 Msa1463920:intergenic 40.0%
ATTGTGGTCATCTGACTGAA+AGG - tig0043746:1519-1538 Msa1463920:intergenic 40.0%
TTGGCGCAACAGTAAAATTG+TGG - tig0043746:1535-1554 Msa1463920:intergenic 40.0%
! ACAATTTTACTGTTGCGCCA+AGG + tig0043746:1534-1553 Msa1463920:intron 40.0%
AGCTAATCTTATTACCCGAG+GGG - tig0043746:1563-1582 Msa1463920:intergenic 40.0%
CTAGCTAATCTTATTACCCG+AGG - tig0043746:1565-1584 Msa1463920:intergenic 40.0%
! CTCGGGTAATAAGATTAGCT+AGG + tig0043746:1563-1582 Msa1463920:intron 40.0%
GGATAGTGTAGGTCATAATG+AGG - tig0043746:1628-1647 Msa1463920:intergenic 40.0%
GACAAAACCCATTGCAATGA+AGG - tig0043746:1649-1668 Msa1463920:intergenic 40.0%
!! TCATTGCAATGGGTTTTGTC+AGG + tig0043746:1649-1668 Msa1463920:intron 40.0%
CTCTCGTATTTCCCATATTC+TGG - tig0043746:1722-1741 Msa1463920:intergenic 40.0%
ATGCACTAACTAAAGGAGGT+AGG - tig0043746:1823-1842 Msa1463920:intergenic 40.0%
ATGTCCAGGAAAGTGAAAAG+TGG - tig0043746:1873-1892 Msa1463920:intergenic 40.0%
TCGGGTAAATCATGAGCATA+TGG - tig0043746:1947-1966 Msa1463920:intergenic 40.0%
TGCTTCTAATATGGGTCCTT+GGG - tig0043746:1999-2018 Msa1463920:intergenic 40.0%
ACAGAAGCAGCCAAATTGTT+TGG + tig0043746:2022-2041 Msa1463920:CDS 40.0%
AAGAAATTCTCCTGGTGAAC+AGG - tig0043746:2113-2132 Msa1463920:intergenic 40.0%
GCCGATAAATGACAATTTCG+AGG - tig0043746:2142-2161 Msa1463920:intergenic 40.0%
ATATCGGCCATGGTATTATC+CGG + tig0043746:2163-2182 Msa1463920:CDS 40.0%
AAAAATGATTGGGACATCGC+TGG + tig0043746:2217-2236 Msa1463920:CDS 40.0%
! CTTCTTTCTTTTCCTGTGGT+TGG + tig0043746:2483-2502 Msa1463920:intron 40.0%
TGAGCTTCATCAACAATCAG+AGG - tig0043746:2649-2668 Msa1463920:intergenic 40.0%
! CTGATTGTTGATGAAGCTCA+CGG + tig0043746:2649-2668 Msa1463920:CDS 40.0%
AACAGTACAGTCTACTCACA+AGG + tig0043746:2732-2751 Msa1463920:CDS 40.0%
! AAGTCCTAGTTACCTGCTTT+TGG + tig0043746:2852-2871 Msa1463920:CDS 40.0%
TTGAGATCTAGCAGCATCTA+GGG - tig0043746:2881-2900 Msa1463920:intergenic 40.0%
GCTTGGTTGAATACAGTATC+AGG - tig0043746:2916-2935 Msa1463920:intergenic 40.0%
TGCTCTCTTAAACAATTCCC+TGG + tig0043746:2961-2980 Msa1463920:CDS 40.0%
CAATGGATCAATTGCAGGAA+TGG - tig0043746:3019-3038 Msa1463920:intergenic 40.0%
TTCCTGCAATTGATCCATTG+CGG + tig0043746:3019-3038 Msa1463920:CDS 40.0%
GGAATTGTTTGTGAACTCGT+TGG + tig0043746:3111-3130 Msa1463920:CDS 40.0%
! CCATGTCCAAAGGCTTTTAT+CGG + tig0043746:3179-3198 Msa1463920:CDS 40.0%
! CATGTCCAAAGGCTTTTATC+GGG + tig0043746:3180-3199 Msa1463920:CDS 40.0%
!! TCTTTAGGTTGCTGAATGGA+AGG - tig0043746:3231-3250 Msa1463920:intergenic 40.0%
TCCATTCAGCAACCTAAAGA+CGG + tig0043746:3231-3250 Msa1463920:CDS 40.0%
TCAGTAAGTACTCCGTCTTT+AGG - tig0043746:3246-3265 Msa1463920:intergenic 40.0%
TGCAAAAAATGCATCTCTGG+GGG - tig0043746:3304-3323 Msa1463920:intergenic 40.0%
! GTAACGATAAAGGAGAGCAT+TGG + tig0043746:3336-3355 Msa1463920:CDS 40.0%
!! GATAAAGGAGAGCATTGGTA+AGG + tig0043746:3341-3360 Msa1463920:CDS 40.0%
CTTATTTGTCCATATCCTCC+AGG + tig0043746:3375-3394 Msa1463920:CDS 40.0%
ATCAATACAGGTATACCTGG+AGG - tig0043746:3393-3412 Msa1463920:intergenic 40.0%
TCTCTCAGTAATAACCTCAC+CGG - tig0043746:3418-3437 Msa1463920:intergenic 40.0%
CTACTCCATGTAAGAAGTGA+AGG + tig0043746:3450-3469 Msa1463920:CDS 40.0%
!! AGTGAAGGTGCTGATATTAG+TGG + tig0043746:3465-3484 Msa1463920:CDS 40.0%
GCGATGTACATAAAAACAGC+CGG + tig0043746:3523-3542 Msa1463920:intron 40.0%
TAACTGAATGCCAGAAATGG+CGG + tig0043746:3606-3625 Msa1463920:intron 40.0%
!!! CATGTGTTTGTTTTGGCAGT+GGG - tig0043746:3907-3926 Msa1463920:intergenic 40.0%
TTTGCACAAAAGTCTCCTTG+TGG + tig0043746:4092-4111 Msa1463920:intron 40.0%
! CGTTAACAATTCTTGGCTTG+AGG + tig0043746:4122-4141 Msa1463920:intron 40.0%
ATGCAACTACTCGAATGAAG+TGG - tig0043746:4288-4307 Msa1463920:intergenic 40.0%
AACCATAACTAAGGTCCTGA+CGG + tig0043746:4328-4347 Msa1463920:intron 40.0%
GAAACGAGGTAGTACTTCTT+CGG - tig0043746:4718-4737 Msa1463920:intergenic 40.0%
TCCCACGTTATCTTCATCTA+AGG + tig0043746:4764-4783 Msa1463920:intron 40.0%
GTGAAAGGGAATGAGATTAC+TGG - tig0043746:5976-5995 Msa1463920:intergenic 40.0%
TCCCTTTCACTCACAAAAGA+AGG + tig0043746:5986-6005 Msa1463920:intron 40.0%
! GCCTTCTTTTGTGAGTGAAA+GGG - tig0043746:5990-6009 Msa1463920:intergenic 40.0%
!!! GGGCTTACAGAAAAGCATTT+TGG - tig0043746:6012-6031 Msa1463920:intergenic 40.0%
GCTAAGTTATTATGGGAAGG+AGG - tig0043746:6217-6236 Msa1463920:intergenic 40.0%
! AGGGCTCATTTAAAATGGGA+CGG + tig0043746:6476-6495 Msa1463920:intron 40.0%
TGGAGAAAACGCAATTGGAT+AGG - tig0043746:6595-6614 Msa1463920:intergenic 40.0%
CTGTATGGAGAAAACGCAAT+TGG - tig0043746:6600-6619 Msa1463920:intergenic 40.0%
TTCTCCATACAGAAAGCTGT+TGG + tig0043746:6608-6627 Msa1463920:intron 40.0%
TCAACCAACAGCTTTCTGTA+TGG - tig0043746:6615-6634 Msa1463920:intergenic 40.0%
ATAGGGAAATTGGTTGTCTG+GGG - tig0043746:6675-6694 Msa1463920:intergenic 40.0%
! TTGGGTGGCGCATTTTTATA+GGG - tig0043746:6692-6711 Msa1463920:intergenic 40.0%
CTTCCTTGAGACATGTTAGT+TGG - tig0043746:6711-6730 Msa1463920:intergenic 40.0%
AGACATAAAATGTCGACACC+AGG + tig0043746:6907-6926 Msa1463920:intron 40.0%
AGCACTGCACTACAAGAATA+TGG + tig0043746:7570-7589 Msa1463920:CDS 40.0%
GCACTGCACTACAAGAATAT+GGG + tig0043746:7571-7590 Msa1463920:CDS 40.0%
TATGGGCAAGAAGATAGCAT+TGG + tig0043746:7588-7607 Msa1463920:CDS 40.0%
ATGGGCAAGAAGATAGCATT+GGG + tig0043746:7589-7608 Msa1463920:CDS 40.0%
TGAACAAAACGGCGTTGTTT+GGG - tig0043746:7635-7654 Msa1463920:intergenic 40.0%
! ATGAGTTGAGTCAACGAAGA+AGG - tig0043746:7777-7796 Msa1463920:intergenic 40.0%
!! TCTTCGTTGACTCAACTCAT+TGG + tig0043746:7777-7796 Msa1463920:CDS 40.0%
CAAAAGAGGTTGTCAAGTTC+TGG - tig0043746:7837-7856 Msa1463920:intergenic 40.0%
!! AGAGAAGCATCCAAACTGTT+TGG + tig0043746:7885-7904 Msa1463920:CDS 40.0%
CTCTGATGATCCAAACAGTT+TGG - tig0043746:7898-7917 Msa1463920:intergenic 40.0%
TGTTTGGATCATCAGAGACA+TGG + tig0043746:7901-7920 Msa1463920:CDS 40.0%
GAGACATGGTTTCTTGTCAA+CGG + tig0043746:7915-7934 Msa1463920:CDS 40.0%
AATCATGACAACCTGTTCAC+CGG + tig0043746:7962-7981 Msa1463920:CDS 40.0%
GGAAGAATCAAATATCCTCC+CGG - tig0043746:7984-8003 Msa1463920:intergenic 40.0%
AAAAATGATTGGGACATCGC+TGG + tig0043746:2217-2236 Msa1463920:CDS 40.0%
GGTAAAAGAAATTGGAAGGC+TGG + tig0043746:8176-8195 Msa1463920:intron 40.0%
CGCTTCAGATTCAAATCTTC+CGG + tig0043746:8348-8367 Msa1463920:intron 40.0%
ATCCAGGAACTAGAATCTGA+AGG + tig0043746:8443-8462 Msa1463920:CDS 40.0%
!! TTCCTTCAGATTCTAGTTCC+TGG - tig0043746:8448-8467 Msa1463920:intergenic 40.0%
CTGCAAACACCATGATAAGT+AGG - tig0043746:8500-8519 Msa1463920:intergenic 40.0%
AACTGTACAGTCTACTCACA+AGG + tig0043746:8649-8668 Msa1463920:CDS 40.0%
! AAGTCCTAGTTACCTGCTTT+TGG + tig0043746:2852-2871 Msa1463920:CDS 40.0%
GGATCAAATGCGGGAAAATT+AGG - tig0043746:8932-8951 Msa1463920:intergenic 40.0%
! TGGGAAGGTGAAAACCGTTT+TGG - tig0043746:479-498 Msa1463920:intergenic 45.0%
AGAAATGAAGGAGACCTGAG+AGG - tig0043746:641-660 Msa1463920:intergenic 45.0%
ATTCTCCCCAGTGCCAATTT+AGG + tig0043746:819-838 Msa1463920:intron 45.0%
TGAAGCACAGACACAAACAC+CGG + tig0043746:1003-1022 Msa1463920:intron 45.0%
! TGTAATCATAGGCGTCGTGT+CGG + tig0043746:1088-1107 Msa1463920:intron 45.0%
GAGACTGTTTGGAGAGCTTA+TGG - tig0043746:1158-1177 Msa1463920:intergenic 45.0%
CGTTAGAACGTCCAAGACTA+AGG + tig0043746:1230-1249 Msa1463920:intron 45.0%
AGCATTGCACTGCCAGAATA+TGG + tig0043746:1707-1726 Msa1463920:CDS 45.0%
GCATTGCACTGCCAGAATAT+GGG + tig0043746:1708-1727 Msa1463920:CDS 45.0%
! TATGGGAAATACGAGAGCGT+TGG + tig0043746:1725-1744 Msa1463920:CDS 45.0%
!! ATGGGAAATACGAGAGCGTT+GGG + tig0043746:1726-1745 Msa1463920:CDS 45.0%
GTGAACTGCTGCATTCATTG+GGG - tig0043746:1781-1800 Msa1463920:intergenic 45.0%
GGTGAACTGCTGCATTCATT+GGG - tig0043746:1782-1801 Msa1463920:intergenic 45.0%
TGGTGAACTGCTGCATTCAT+TGG - tig0043746:1783-1802 Msa1463920:intergenic 45.0%
CACTTTCCTGGACATAACAG+AGG + tig0043746:1878-1897 Msa1463920:CDS 45.0%
TTGTCAAGTTCAGGAAGCTC+GGG - tig0043746:1965-1984 Msa1463920:intergenic 45.0%
GTTGTCAAGTTCAGGAAGCT+CGG - tig0043746:1966-1985 Msa1463920:intergenic 45.0%
CAGAAGAGGTTGTCAAGTTC+AGG - tig0043746:1974-1993 Msa1463920:intergenic 45.0%
GCTTCTAATATGGGTCCTTG+GGG - tig0043746:1998-2017 Msa1463920:intergenic 45.0%
GTGCTTCTAATATGGGTCCT+TGG - tig0043746:2000-2019 Msa1463920:intergenic 45.0%
AAGACATGGTTTCTTGTCGG+AGG + tig0043746:2052-2071 Msa1463920:CDS 45.0%
!! TTGTCGGAGGTACTACTTGT+GGG + tig0043746:2065-2084 Msa1463920:CDS 45.0%
ATAATGGCAACCTGTTCACC+AGG + tig0043746:2100-2119 Msa1463920:CDS 45.0%
! TTTATCGGCTATATCGGCCA+TGG + tig0043746:2153-2172 Msa1463920:CDS 45.0%
! AATGTACTTAGGCACTGCAC+CGG - tig0043746:2185-2204 Msa1463920:intergenic 45.0%
GTCTTCAGACTCGACTCTTA+AGG + tig0043746:2419-2438 Msa1463920:intron 45.0%
TGCTATCCAGGAACTCGAAT+TGG + tig0043746:2522-2541 Msa1463920:CDS 45.0%
ATCCAGGAACTCGAATTGGA+AGG + tig0043746:2526-2545 Msa1463920:CDS 45.0%
! TTCCTTCCAATTCGAGTTCC+TGG - tig0043746:2531-2550 Msa1463920:intergenic 45.0%
TCATCTATGCTGCACATGTC+AGG + tig0043746:2775-2794 Msa1463920:CDS 45.0%
! GACTTGTGGTTTGGAGAGTT+TGG - tig0043746:2837-2856 Msa1463920:intergenic 45.0%
GGTAACTAGGACTTGTGGTT+TGG - tig0043746:2846-2865 Msa1463920:intergenic 45.0%
AAGCAGGTAACTAGGACTTG+TGG - tig0043746:2851-2870 Msa1463920:intergenic 45.0%
GATGCCAAAAGCAGGTAACT+AGG - tig0043746:2859-2878 Msa1463920:intergenic 45.0%
GTTGAGATCTAGCAGCATCT+AGG - tig0043746:2882-2901 Msa1463920:intergenic 45.0%
GGATCAATTGCAGGAATGGT+CGG - tig0043746:3015-3034 Msa1463920:intergenic 45.0%
AAACCAACAGTAAGCCGCAA+TGG - tig0043746:3036-3055 Msa1463920:intergenic 45.0%
!!! TGCGGCTTACTGTTGGTTTT+TGG + tig0043746:3037-3056 Msa1463920:CDS 45.0%
!!! GCGGCTTACTGTTGGTTTTT+GGG + tig0043746:3038-3057 Msa1463920:CDS 45.0%
!!! ACTGTTGGTTTTTGGGAGCT+TGG + tig0043746:3045-3064 Msa1463920:CDS 45.0%
!!! CTGTTGGTTTTTGGGAGCTT+GGG + tig0043746:3046-3065 Msa1463920:CDS 45.0%
!! TTTTGGGAGCTTGGGTTATC+AGG + tig0043746:3054-3073 Msa1463920:CDS 45.0%
TGGGTTATCAGGTTACGAAG+CGG + tig0043746:3065-3084 Msa1463920:CDS 45.0%
CCGATAAAAGCCTTTGGACA+TGG - tig0043746:3182-3201 Msa1463920:intergenic 45.0%
!! TCCGTCTTTAGGTTGCTGAA+TGG - tig0043746:3235-3254 Msa1463920:intergenic 45.0%
!! GGAGAGCATTGGTAAGGTTT+CGG + tig0043746:3347-3366 Msa1463920:CDS 45.0%
!! GAGAGCATTGGTAAGGTTTC+GGG + tig0043746:3348-3367 Msa1463920:CDS 45.0%
!! AGAGCATTGGTAAGGTTTCG+GGG + tig0043746:3349-3368 Msa1463920:CDS 45.0%
ACAGGTATACCTGGAGGATA+TGG - tig0043746:3387-3406 Msa1463920:intergenic 45.0%
GGGATCAATACAGGTATACC+TGG - tig0043746:3396-3415 Msa1463920:intergenic 45.0%
! GGTATACCTGTATTGATCCC+CGG + tig0043746:3396-3415 Msa1463920:CDS 45.0%
TCTCAGTAATAACCTCACCG+GGG - tig0043746:3416-3435 Msa1463920:intergenic 45.0%
CTCTCAGTAATAACCTCACC+GGG - tig0043746:3417-3436 Msa1463920:intergenic 45.0%
CAGCACCTTCACTTCTTACA+TGG - tig0043746:3458-3477 Msa1463920:intergenic 45.0%
ATCATGAAACTGTGAGGTGG+CGG - tig0043746:3824-3843 Msa1463920:intergenic 45.0%
!!! GCATGTGTTTGTTTTGGCAG+TGG - tig0043746:3908-3927 Msa1463920:intergenic 45.0%
!! TCGAGTTGGTTTGATCCATG+AGG - tig0043746:4177-4196 Msa1463920:intergenic 45.0%
AAGATATCATGTCCTCCGTC+AGG - tig0043746:4346-4365 Msa1463920:intergenic 45.0%
GCAAAGAGTAATCTTGTGGC+TGG + tig0043746:5672-5691 Msa1463920:intron 45.0%
!!! GATTGTCTGTTTTTGAGCGC+GGG - tig0043746:5778-5797 Msa1463920:intergenic 45.0%
!!! GGATTGTCTGTTTTTGAGCG+CGG - tig0043746:5779-5798 Msa1463920:intergenic 45.0%
CGGAAAACAAGATCCAAAGC+AGG + tig0043746:5887-5906 Msa1463920:CDS 45.0%
GGGAATGAGATTACTGGAAG+TGG - tig0043746:5970-5989 Msa1463920:intergenic 45.0%
! GGCCTTCTTTTGTGAGTGAA+AGG - tig0043746:5991-6010 Msa1463920:intergenic 45.0%
TGAGTGCCCCTATCAACTAT+TGG - tig0043746:6396-6415 Msa1463920:intergenic 45.0%
ATCTCCGTTGAAGAACCTAC+AGG + tig0043746:6550-6569 Msa1463920:intron 45.0%
TCTCCGTTGAAGAACCTACA+GGG + tig0043746:6551-6570 Msa1463920:intron 45.0%
GTACCCTGTAGGTTCTTCAA+CGG - tig0043746:6557-6576 Msa1463920:intergenic 45.0%
AAGAACCTACAGGGTACACT+AGG + tig0043746:6560-6579 Msa1463920:intron 45.0%
! GTTGTCTGGGGTAAGAGATT+TGG - tig0043746:6663-6682 Msa1463920:intergenic 45.0%
! GTTGGGTGGCGCATTTTTAT+AGG - tig0043746:6693-6712 Msa1463920:intergenic 45.0%
CTTGAGACATGTTAGTTGGG+TGG - tig0043746:6707-6726 Msa1463920:intergenic 45.0%
CACCCAACTAACATGTCTCA+AGG + tig0043746:6705-6724 Msa1463920:intron 45.0%
AAAGACGGAACGGTTTGCAA+AGG - tig0043746:7056-7075 Msa1463920:intergenic 45.0%
CTGAGAGGAAAAAGACGGAA+CGG - tig0043746:7066-7085 Msa1463920:intergenic 45.0%
ACCAGCTGAGAGGAAAAAGA+CGG - tig0043746:7071-7090 Msa1463920:intergenic 45.0%
CTGAACAAAACGGCGTTGTT+TGG - tig0043746:7636-7655 Msa1463920:intergenic 45.0%
!! TTCAATGCACTGACTAGAGG+AGG - tig0043746:7690-7709 Msa1463920:intergenic 45.0%
!! GCTTTCAATGCACTGACTAG+AGG - tig0043746:7693-7712 Msa1463920:intergenic 45.0%
GTGTCCAGGAAAGTGAAAAC+TGG - tig0043746:7736-7755 Msa1463920:intergenic 45.0%
TTGAGTCAACGAAGAAGGAG+CGG - tig0043746:7772-7791 Msa1463920:intergenic 45.0%
! ACAACCTCTTTTGTCCCCAA+GGG + tig0043746:7844-7863 Msa1463920:CDS 45.0%
TGCTTCTAATATGGGCCCTT+GGG - tig0043746:7862-7881 Msa1463920:intergenic 45.0%
CTTGTCAACGGTACTACTTG+TGG + tig0043746:7927-7946 Msa1463920:CDS 45.0%
ATCATGACAACCTGTTCACC+GGG + tig0043746:7963-7982 Msa1463920:CDS 45.0%
CACTGCACCAGATAAAACCA+TGG - tig0043746:8036-8055 Msa1463920:intergenic 45.0%
!! GCAGGTATTGAATGCAATCC+AGG + tig0043746:8427-8446 Msa1463920:intron 45.0%
CATAGACGACTGAGTAAGAG+AGG - tig0043746:8681-8700 Msa1463920:intergenic 45.0%
GTCGTCTATGCTGCATATGT+CGG + tig0043746:8691-8710 Msa1463920:CDS 45.0%
TCGTCTATGCTGCATATGTC+GGG + tig0043746:8692-8711 Msa1463920:CDS 45.0%
GGTAACTAGGACTTGTGCTT+TGG - tig0043746:8763-8782 Msa1463920:intergenic 45.0%
GATGCCAAAAGCAGGTAACT+AGG - tig0043746:2859-2878 Msa1463920:intergenic 45.0%
! TTGAGCTCTAGCAGCATCTA+GGG - tig0043746:8798-8817 Msa1463920:intergenic 45.0%
TTCCCGCATTTGATCCATTC+CGG + tig0043746:8936-8955 Msa1463920:CDS 45.0%
AAGCCGGAATGGATCAAATG+CGG - tig0043746:8942-8961 Msa1463920:intergenic 45.0%
!!! TTCTTTATTATTTAATTTTT+TGG + tig0043746:4735-4754 Msa1463920:intron 5.0%
!!! TATATAATTATGATTTTAAA+CGG + tig0043746:7393-7412 Msa1463920:intron 5.0%
! GATTCCGTCTTGTTCCTCTC+AGG + tig0043746:624-643 Msa1463920:CDS 50.0%
GAGACCTGAGAGGAACAAGA+CGG - tig0043746:631-650 Msa1463920:intergenic 50.0%
!! TGCTCTGGTGGTATTGGCTT+GGG + tig0043746:759-778 Msa1463920:intron 50.0%
TCAAACCTGAGACCTCGAGT+AGG - tig0043746:800-819 Msa1463920:intergenic 50.0%
TCCCCAGTGCCAATTTAGGT+GGG + tig0043746:823-842 Msa1463920:intron 50.0%
AGCCCACCTAAATTGGCACT+GGG - tig0043746:828-847 Msa1463920:intergenic 50.0%
TAGCCCACCTAAATTGGCAC+TGG - tig0043746:829-848 Msa1463920:intergenic 50.0%
! GTTGGTGTCTATGTCGTGTC+CGG - tig0043746:1025-1044 Msa1463920:intergenic 50.0%
!! TATCATCGGTGTTGGCGTGT+TGG - tig0043746:1043-1062 Msa1463920:intergenic 50.0%
! GGCAGCATTTTCTTCAGCTG+AGG - tig0043746:1852-1871 Msa1463920:intergenic 50.0%
!!! GCTGCCACTTTTCACTTTCC+TGG + tig0043746:1866-1885 Msa1463920:CDS 50.0%
TCCAATGAGTCGAGTCATCG+AGG - tig0043746:1918-1937 Msa1463920:intergenic 50.0%
!! CTTGTCGGAGGTACTACTTG+TGG + tig0043746:2064-2083 Msa1463920:CDS 50.0%
AGGTACTACTTGTGGGATCC+AGG + tig0043746:2072-2091 Msa1463920:CDS 50.0%
TGGGATCCAGGCAGCAATAA+TGG + tig0043746:2084-2103 Msa1463920:CDS 50.0%
AGGTTGCCATTATTGCTGCC+TGG - tig0043746:2093-2112 Msa1463920:intergenic 50.0%
CACTGCACCGGATAATACCA+TGG - tig0043746:2173-2192 Msa1463920:intergenic 50.0%
AATGATTGGGACATCGCTGG+TGG + tig0043746:2220-2239 Msa1463920:CDS 50.0%
!! TGGTGGTGTCACTCCATTAC+AGG + tig0043746:2237-2256 Msa1463920:CDS 50.0%
!! TTTCCTGTGGTTGGTGTTGC+AGG + tig0043746:2492-2511 Msa1463920:intron 50.0%
ATACCTGCAACACCAACCAC+AGG - tig0043746:2498-2517 Msa1463920:intergenic 50.0%
!! GCAGGTATTGAGTGCTATCC+AGG + tig0043746:2510-2529 Msa1463920:intron 50.0%
CATCTAGGGATGCCAAAAGC+AGG - tig0043746:2867-2886 Msa1463920:intergenic 50.0%
!! TCTCAAGCACTGAGATGCCA+GGG - tig0043746:2981-3000 Msa1463920:intergenic 50.0%
!! TTCTCAAGCACTGAGATGCC+AGG - tig0043746:2982-3001 Msa1463920:intergenic 50.0%
AGCCGCAATGGATCAATTGC+AGG - tig0043746:3024-3043 Msa1463920:intergenic 50.0%
GATCCATTGCGGCTTACTGT+TGG + tig0043746:3030-3049 Msa1463920:CDS 50.0%
CTTGTAGGGACCATGTCCAA+AGG + tig0043746:3169-3188 Msa1463920:CDS 50.0%
!! GAGCATTGGTAAGGTTTCGG+GGG + tig0043746:3350-3369 Msa1463920:CDS 50.0%
CCAACATCAACCGCCATTTC+TGG - tig0043746:3619-3638 Msa1463920:intergenic 50.0%
! CCAGAAATGGCGGTTGATGT+TGG + tig0043746:3616-3635 Msa1463920:intron 50.0%
!!! GTGTTTGTTTTGGCAGTGGG+TGG - tig0043746:3904-3923 Msa1463920:intergenic 50.0%
AGTTCTCCTTATGCTGGTCG+AGG + tig0043746:4204-4223 Msa1463920:intron 50.0%
GAACAACCTCGACCAGCATA+AGG - tig0043746:4213-4232 Msa1463920:intergenic 50.0%
CTCCGTCAGGACCTTAGTTA+TGG - tig0043746:4333-4352 Msa1463920:intergenic 50.0%
CATAACTAAGGTCCTGACGG+AGG + tig0043746:4331-4350 Msa1463920:intron 50.0%
! ACAATCCGTGTTGACACGAG+AGG + tig0043746:5792-5811 Msa1463920:intron 50.0%
! CAATCCGTGTTGACACGAGA+GGG + tig0043746:5793-5812 Msa1463920:intron 50.0%
! AATCCGTGTTGACACGAGAG+GGG + tig0043746:5794-5813 Msa1463920:intron 50.0%
AGATCCAAAGCAGGAAGCTG+TGG + tig0043746:5896-5915 Msa1463920:CDS 50.0%
TCTTCCACAGCTTCCTGCTT+TGG - tig0043746:5903-5922 Msa1463920:intergenic 50.0%
AACCTACAGGGTACACTAGG+TGG + tig0043746:6563-6582 Msa1463920:intron 50.0%
ATCCACCTAGTGTACCCTGT+AGG - tig0043746:6568-6587 Msa1463920:intergenic 50.0%
! TCCGTCTTTTTCCTCTCAGC+TGG + tig0043746:7067-7086 Msa1463920:intron 50.0%
GGAACGTGCAGGTCAAAATG+AGG - tig0043746:7488-7507 Msa1463920:intergenic 50.0%
TGCACGTTCCTTCACTGCAT+CGG + tig0043746:7498-7517 Msa1463920:intron 50.0%
GACAAAACCCGATGCAGTGA+AGG - tig0043746:7509-7528 Msa1463920:intergenic 50.0%
!! TCACTGCATCGGGTTTTGTC+AGG + tig0043746:7509-7528 Msa1463920:intron 50.0%
!! ATGCACTGACTAGAGGAGGT+AGG - tig0043746:7686-7705 Msa1463920:intergenic 50.0%
! GGCAGCATTTTCTTCAGCTG+AGG - tig0043746:1852-1871 Msa1463920:intergenic 50.0%
! GCTGCCAGTTTTCACTTTCC+TGG + tig0043746:7729-7748 Msa1463920:CDS 50.0%
CACTTTCCTGGACACAACAG+AGG + tig0043746:7741-7760 Msa1463920:CDS 50.0%
! GACAACCTCTTTTGTCCCCA+AGG + tig0043746:7843-7862 Msa1463920:CDS 50.0%
GCTTCTAATATGGGCCCTTG+GGG - tig0043746:7861-7880 Msa1463920:intergenic 50.0%
GTGCTTCTAATATGGGCCCT+TGG - tig0043746:7863-7882 Msa1463920:intergenic 50.0%
AGGTTGTCATGATTGCTGCC+TGG - tig0043746:7956-7975 Msa1463920:intergenic 50.0%
CAAATATCCTCCCGGTGAAC+AGG - tig0043746:7976-7995 Msa1463920:intergenic 50.0%
AATGATTGGGACATCGCTGG+TGG + tig0043746:2220-2239 Msa1463920:CDS 50.0%
!! GGATTAACGGGTGTTGTTGC+AGG + tig0043746:8409-8428 Msa1463920:intron 50.0%
GTCGGGCGACATTGTAGAAA+AGG + tig0043746:8709-8728 Msa1463920:CDS 50.0%
CATCTAGGGATGCCAAAAGC+AGG - tig0043746:2867-2886 Msa1463920:intergenic 50.0%
! GTTGAGCTCTAGCAGCATCT+AGG - tig0043746:8799-8818 Msa1463920:intergenic 50.0%
AGCCGGAATGGATCAAATGC+GGG - tig0043746:8941-8960 Msa1463920:intergenic 50.0%
GATCCATTCCGGCTTACTGT+AGG + tig0043746:8947-8966 Msa1463920:CDS 50.0%
AAGCCTACAGTAAGCCGGAA+TGG - tig0043746:8953-8972 Msa1463920:intergenic 50.0%
! TCCGGCTTACTGTAGGCTTT+TGG + tig0043746:8954-8973 Msa1463920:CDS 50.0%
CCCAAAAGCCTACAGTAAGC+CGG - tig0043746:8958-8977 Msa1463920:intergenic 50.0%
! CCGGCTTACTGTAGGCTTTT+GGG + tig0043746:8955-8974 Msa1463920:CDS 50.0%
!! ACTGTAGGCTTTTGGGAGCT+TGG + tig0043746:8962-8981 Msa1463920:CDS 50.0%
TTGAAAGGGGACGACGAGAG+TGG - tig0043746:446-465 Msa1463920:intergenic 55.0%
TTGGGCTGCTCTGGTGGTAT+TGG + tig0043746:753-772 Msa1463920:intron 55.0%
!! CTGCTCTGGTGGTATTGGCT+TGG + tig0043746:758-777 Msa1463920:intron 55.0%
!! GTGGTATTGGCTTGGGACCT+GGG + tig0043746:766-785 Msa1463920:intron 55.0%
CTCCCCAGTGCCAATTTAGG+TGG + tig0043746:822-841 Msa1463920:intron 55.0%
GCCCACCTAAATTGGCACTG+GGG - tig0043746:827-846 Msa1463920:intergenic 55.0%
CACAGACACTCCTCAGACGT+CGG - tig0043746:1123-1142 Msa1463920:intergenic 55.0%
! ATGCGGGAGCTTTGTGCATC+AGG - tig0043746:1397-1416 Msa1463920:intergenic 55.0%
ACAAAGCTCCCGCATACGCA+GGG + tig0043746:1402-1421 Msa1463920:intron 55.0%
AAAATGGTCGGACCCCTTCC+CGG - tig0043746:1429-1448 Msa1463920:intergenic 55.0%
TATTACCCGAGGGGAAGCCT+TGG - tig0043746:1554-1573 Msa1463920:intergenic 55.0%
TCACCAGAGCTTCAGCAGAG+TGG + tig0043746:1797-1816 Msa1463920:CDS 55.0%
GCATGGCCTCTGTTATGTCC+AGG - tig0043746:1887-1906 Msa1463920:intergenic 55.0%
ATGAGTCGAGTCATCGAGGC+AGG - tig0043746:1914-1933 Msa1463920:intergenic 55.0%
GCCTCGATGACTCGACTCAT+TGG + tig0043746:1914-1933 Msa1463920:CDS 55.0%
GACAACCTCTTCTGTCCCCA+AGG + tig0043746:1980-1999 Msa1463920:CDS 55.0%
GAAGCTCACGGTGCACATCT+AGG + tig0043746:2661-2680 Msa1463920:CDS 55.0%
TAGATCAGCCCCTTGCTGGA+GGG - tig0043746:2713-2732 Msa1463920:intergenic 55.0%
TTAGATCAGCCCCTTGCTGG+AGG - tig0043746:2714-2733 Msa1463920:intergenic 55.0%
CTGTTAGATCAGCCCCTTGC+TGG - tig0043746:2717-2736 Msa1463920:intergenic 55.0%
! ACCTGTATTGATCCCCGGTG+AGG + tig0043746:3401-3420 Msa1463920:CDS 55.0%
ACCTCACCGGGGATCAATAC+AGG - tig0043746:3405-3424 Msa1463920:intergenic 55.0%
GACGACTATTTGGGGGGCAA+GGG - tig0043746:4249-4268 Msa1463920:intergenic 55.0%
AGACGACTATTTGGGGGGCA+AGG - tig0043746:4250-4269 Msa1463920:intergenic 55.0%
TGTCCCCTCTCGTGTCAACA+CGG - tig0043746:5800-5819 Msa1463920:intergenic 55.0%
GATGCAGTGAAGGAACGTGC+AGG - tig0043746:7499-7518 Msa1463920:intergenic 55.0%
GCACGTTCCTTCACTGCATC+GGG + tig0043746:7499-7518 Msa1463920:intron 55.0%
TCACCAGAGCTTCAGCAGAG+TGG + tig0043746:1797-1816 Msa1463920:CDS 55.0%
TCAACGAAGAAGGAGCGGCA+TGG - tig0043746:7767-7786 Msa1463920:intergenic 55.0%
CGGTACTACTTGTGGAGTCC+AGG + tig0043746:7935-7954 Msa1463920:CDS 55.0%
ATGACAACCTGTTCACCGGG+AGG + tig0043746:7966-7985 Msa1463920:CDS 55.0%
! TGGTGGCGTCACTCCATTAC+AGG + tig0043746:8100-8119 Msa1463920:CDS 55.0%
GAAGCTCATGGCGCACATCT+AGG + tig0043746:8578-8597 Msa1463920:CDS 55.0%
TAGATCAGCCCCTTGCTGGA+GGG - tig0043746:2713-2732 Msa1463920:intergenic 55.0%
TTAGATCAGCCCCTTGCTGG+AGG - tig0043746:2714-2733 Msa1463920:intergenic 55.0%
CAGTTAGATCAGCCCCTTGC+TGG - tig0043746:8634-8653 Msa1463920:intergenic 55.0%
!! TCTCAAGCACTGAGACGCCA+GGG - tig0043746:8898-8917 Msa1463920:intergenic 55.0%
!! TTCTCAAGCACTGAGACGCC+AGG - tig0043746:8899-8918 Msa1463920:intergenic 55.0%
GTAACCCACTTGGGCTGCTC+TGG + tig0043746:744-763 Msa1463920:intron 60.0%
ACCACCAGAGCAGCCCAAGT+GGG - tig0043746:751-770 Msa1463920:intergenic 60.0%
TACCACCAGAGCAGCCCAAG+TGG - tig0043746:752-771 Msa1463920:intergenic 60.0%
!! GGTGGTATTGGCTTGGGACC+TGG + tig0043746:765-784 Msa1463920:intron 60.0%
! TCGAGTAGGAGCACACTCCC+AGG - tig0043746:786-805 Msa1463920:intergenic 60.0%
! TGGGAGTGTGCTCCTACTCG+AGG + tig0043746:785-804 Msa1463920:intron 60.0%
GTGCTCCTACTCGAGGTCTC+AGG + tig0043746:792-811 Msa1463920:intron 60.0%
GTGTCGAACACCGACGTCTG+AGG + tig0043746:1110-1129 Msa1463920:intron 60.0%
CACAAAGCTCCCGCATACGC+AGG + tig0043746:1401-1420 Msa1463920:intron 60.0%
! GGGAAGGGGTCCGACCATTT+TGG + tig0043746:1428-1447 Msa1463920:intron 60.0%
AGGCCACTCTGCTGAAGCTC+TGG - tig0043746:1803-1822 Msa1463920:intergenic 60.0%
TCGAGTCATCGAGGCAGGAG+CGG - tig0043746:1909-1928 Msa1463920:intergenic 60.0%
TGGGTCCTTGGGGACAGAAG+AGG - tig0043746:1988-2007 Msa1463920:intergenic 60.0%
CTAGCTCAGCCCTCCAGCAA+GGG + tig0043746:2701-2720 Msa1463920:CDS 60.0%
TAGCTCAGCCCTCCAGCAAG+GGG + tig0043746:2702-2721 Msa1463920:CDS 60.0%
! GTGTTGACACGAGAGGGGAC+AGG + tig0043746:5799-5818 Msa1463920:intron 60.0%
AGGCCACTCTGCTGAAGCTC+TGG - tig0043746:1803-1822 Msa1463920:intergenic 60.0%
GCATGGCCTCTGTTGTGTCC+AGG - tig0043746:7750-7769 Msa1463920:intergenic 60.0%
TGGGCCCTTGGGGACAAAAG+AGG - tig0043746:7851-7870 Msa1463920:intergenic 60.0%
AGGGCTGAGCTAGGCAGTTC+AGG - tig0043746:2694-2713 Msa1463920:intergenic 60.0%
CTAGCTCAGCCCTCCAGCAA+GGG + tig0043746:2701-2720 Msa1463920:CDS 60.0%
TAGCTCAGCCCTCCAGCAAG+GGG + tig0043746:2702-2721 Msa1463920:CDS 60.0%
ACCCACTTGGGCTGCTCTGG+TGG + tig0043746:747-766 Msa1463920:intron 65.0%
TTCCCGGACCCTGCGTATGC+GGG - tig0043746:1413-1432 Msa1463920:intergenic 65.0%
CTTCCCGGACCCTGCGTATG+CGG - tig0043746:1414-1433 Msa1463920:intergenic 65.0%
GCATACGCAGGGTCCGGGAA+GGG + tig0043746:1413-1432 Msa1463920:intron 65.0%
CATACGCAGGGTCCGGGAAG+GGG + tig0043746:1414-1433 Msa1463920:intron 65.0%
GTTGCGCCAAGGCTTCCCCT+CGG + tig0043746:1545-1564 Msa1463920:intron 65.0%
TTGCGCCAAGGCTTCCCCTC+GGG + tig0043746:1546-1565 Msa1463920:intron 65.0%
TCATCGAGGCAGGAGCGGCA+TGG - tig0043746:1904-1923 Msa1463920:intergenic 65.0%
CCTTGCTGGAGGGCTGAGCT+AGG - tig0043746:2703-2722 Msa1463920:intergenic 65.0%
CCTAGCTCAGCCCTCCAGCA+AGG + tig0043746:2700-2719 Msa1463920:CDS 65.0%
GTGAAGGGGGACCAGCTGAG+AGG - tig0043746:7081-7100 Msa1463920:intergenic 65.0%
CCTTGCTGGAGGGCTGAGCT+AGG - tig0043746:2703-2722 Msa1463920:intergenic 65.0%
CCTAGCTCAGCCCTCCAGCA+AGG + tig0043746:2700-2719 Msa1463920:CDS 65.0%
GCTCCCGCATACGCAGGGTC+CGG + tig0043746:1407-1426 Msa1463920:intron 70.0%
CTCCCGCATACGCAGGGTCC+GGG + tig0043746:1408-1427 Msa1463920:intron 70.0%
CGCATACGCAGGGTCCGGGA+AGG + tig0043746:1412-1431 Msa1463920:intron 70.0%
Chromosome Type Strat End Strand Name
tig0043746 gene 379 8991 379 ID=Msa1463920;Name=Msa1463920
tig0043746 mRNA 379 8991 379 ID=Msa1463920-mRNA-1;Parent=Msa1463920;Name=Msa1463920-mRNA-1;_AED=0.10;_eAED=0.13;_QI=34|0.66|0.42|1|1|1|7|0|985
tig0043746 exon 379 505 379 ID=Msa1463920-mRNA-1:exon:24250;Parent=Msa1463920-mRNA-1
tig0043746 exon 586 645 586 ID=Msa1463920-mRNA-1:exon:24251;Parent=Msa1463920-mRNA-1
tig0043746 exon 1701 2258 1701 ID=Msa1463920-mRNA-1:exon:24252;Parent=Msa1463920-mRNA-1
tig0043746 exon 2514 3527 2514 ID=Msa1463920-mRNA-1:exon:24253;Parent=Msa1463920-mRNA-1
tig0043746 exon 5843 5953 5843 ID=Msa1463920-mRNA-1:exon:24254;Parent=Msa1463920-mRNA-1
tig0043746 exon 7564 8121 7564 ID=Msa1463920-mRNA-1:exon:24255;Parent=Msa1463920-mRNA-1
tig0043746 exon 8431 8991 8431 ID=Msa1463920-mRNA-1:exon:24256;Parent=Msa1463920-mRNA-1
tig0043746 five_prime_UTR 379 412 379 ID=Msa1463920-mRNA-1:five_prime_utr;Parent=Msa1463920-mRNA-1
tig0043746 CDS 413 505 413 ID=Msa1463920-mRNA-1:cds;Parent=Msa1463920-mRNA-1
tig0043746 CDS 586 645 586 ID=Msa1463920-mRNA-1:cds;Parent=Msa1463920-mRNA-1
tig0043746 CDS 1701 2258 1701 ID=Msa1463920-mRNA-1:cds;Parent=Msa1463920-mRNA-1
tig0043746 CDS 2514 3527 2514 ID=Msa1463920-mRNA-1:cds;Parent=Msa1463920-mRNA-1
tig0043746 CDS 5843 5953 5843 ID=Msa1463920-mRNA-1:cds;Parent=Msa1463920-mRNA-1
tig0043746 CDS 7564 8121 7564 ID=Msa1463920-mRNA-1:cds;Parent=Msa1463920-mRNA-1
tig0043746 CDS 8431 8991 8431 ID=Msa1463920-mRNA-1:cds;Parent=Msa1463920-mRNA-1
Gene Sequence

>Msa1463920

ATGGTGTATATTTCGTTCTCACTATTACTTCCACTCTCGTCGTCCCCTTTCAATCCCAAAAATCCAAAACGGTTTTCACCTTCCCATTTTTCAGGACGTCCTTACAAATTGAATTTCAGGACTTCATTGACGATTCCGTCTTGTTCCTCTCAGCAAAGAAGCATTGCACTGCCAGAATATGGGAAATACGAGAGCGTTGGGACAGTGAGCACTGAATCAATCACAAACAACCCCAATGAATGCAGCAGTTCACCAGAGCTTCAGCAGAGTGGCCTACCTCCTTTAGTTAGTGCATTGAAAGCCTCAGCTGAAGAAAATGCTGCCACTTTTCACTTTCCTGGACATAACAGAGGCCATGCCGCTCCTGCCTCGATGACTCGACTCATTGGAAGAAGACCATATGCTCATGATTTACCCGAGCTTCCTGAACTTGACAACCTCTTCTGTCCCCAAGGACCCATATTAGAAGCACAAACAGAAGCAGCCAAATTGTTTGGATCATCAAAGACATGGTTTCTTGTCGGAGGTACTACTTGTGGGATCCAGGCAGCAATAATGGCAACCTGTTCACCAGGAGAATTTCTTATTCTTCCTCGAAATTGTCATTTATCGGCTATATCGGCCATGGTATTATCCGGTGCAGTGCCTAAGTACATTGTTCCTGACTATAAAAATGATTGGGACATCGCTGGTGGTGTCACTCCATTACAGGTATTGAGTGCTATCCAGGAACTCGAATTGGAAGGAAAAAAAGCAGCAGCAGTTTTCATCACTTCACCTACTTATCATGGTATTTGCAGTAACTTGAGCGACATTTCTGAGTTGTGTCATTACCGTAAAATTCCTCTGATTGTTGATGAAGCTCACGGTGCACATCTAGGATTTCATTCTGAACTGCCTAGCTCAGCCCTCCAGCAAGGGGCTGATCTAACAGTACAGTCTACTCACAAGGTTCTTTGCTCTCTTACTCAGTCATCTATGCTGCACATGTCAGGTGACATTGTAGATAAAGAAAAAATATCTAGGTGTCTCCAAACTCTCCAAACCACAAGTCCTAGTTACCTGCTTTTGGCATCCCTAGATGCTGCTAGATCTCAACTTAGTGAAAGCCCTGATACTGTATTCAACCAAGCGATTAAATTAGCAAATGAAGCAAAGTGCTCTCTTAAACAATTCCCTGGCATCTCAGTGCTTGAGAATTCAAGCTTTCCGACCATTCCTGCAATTGATCCATTGCGGCTTACTGTTGGTTTTTGGGAGCTTGGGTTATCAGGTTACGAAGCGGATGAAATCTTATATCGGGATTTCGGAATTGTTTGTGAACTCGTTGGGAATAAATCTATCACTTATGCACTTAATCTTGGAACTTGTAGGGACCATGTCCAAAGGCTTTTATCGGGAATAAAGCATCTAGCTGCAACATATCCTTCCATTCAGCAACCTAAAGACGGAGTACTTACTGAACGCGCACCCTTTGATGATATAATCACGAGCTTGACCCCCAGAGATGCATTTTTTGCAAGTAAAAGAAAAGTAACGATAAAGGAGAGCATTGGTAAGGTTTCGGGGGAGCTTATTTGTCCATATCCTCCAGGTATACCTGTATTGATCCCCGGTGAGGTTATTACTGAGAGAGCCGTCAATTATCTACTCCATGTAAGAAGTGAAGGTGCTGATATTAGTGGAGCATCTGATCCCTTACTTTCTTCTATAGTTGTCTGCGATTTAGTTGGTAACACTGATGAAGATAAGATTGGTTTAGCCCTTTACGGAAAACAAGATCCAAAGCAGGAAGCTGTGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAATGGTGAAAAAAGCACTGCACTACAAGAATATGGGCAAGAAGATAGCATTGGGACAGTGAACACTGCATCAATCCCAAACAACGCCGTTTTGTTCAGCAATTCACCAGAGCTTCAGCAGAGTGGCCTACCTCCTCTAGTCAGTGCATTGAAAGCCTCAGCTGAAGAAAATGCTGCCAGTTTTCACTTTCCTGGACACAACAGAGGCCATGCCGCTCCTTCTTCGTTGACTCAACTCATTGGAATAAGACCATATGCTCATGATTTGTCTAGCATTCCAGAACTTGACAACCTCTTTTGTCCCCAAGGGCCCATATTAGAAGCACAAAGAGAAGCATCCAAACTGTTTGGATCATCAGAGACATGGTTTCTTGTCAACGGTACTACTTGTGGAGTCCAGGCAGCAATCATGACAACCTGTTCACCGGGAGGATATTTGATTCTTCCTAGGAATTCTCATTTATCAGCTATATCTGCCATGGTTTTATCTGGTGCAGTGCCTAAGTACATTATTCCCGACTATAAAAATGATTGGGACATCGCTGGTGGCGTCACTCCATTACAGGTATTGAATGCAATCCAGGAACTAGAATCTGAAGGAAAGAAAGCAGCAGCAGTTTTCATCACTTCACCTACTTATCATGGTGTTTGCAGTAACTTGAGTGACATTTCTGCGTTGTGTCATTCTCGTAAAATTCCTTTGATTGTTGATGAAGCTCATGGCGCACATCTAGGATTACATCCTGAACTGCCTAGCTCAGCCCTCCAGCAAGGGGCTGATCTAACTGTACAGTCTACTCACAAGGTTCTTTCCTCTCTTACTCAGTCGTCTATGCTGCATATGTCGGGCGACATTGTAGAAAAGGAAAAAATATCTAGGTGTCTTCAAACACTCCAAAGCACAAGTCCTAGTTACCTGCTTTTGGCATCCCTAGATGCTGCTAGAGCTCAACTTAGTGAAAGCCCTGCTATTGTATTCAAACAAGCCATTGAATTAGCAAATGAAGCAAAGTTTTTGCTAAAAAGAATCCCTGGCGTCTCAGTGCTTGAGAATGCAAGCTTTCCTAATTTTCCCGCATTTGATCCATTCCGGCTTACTGTAGGCTTTTGGGAGCTTGGTTTATCA

Protein sequence

>Msa1463920

MVYISFSLLLPLSSSPFNPKNPKRFSPSHFSGRPYKLNFRTSLTIPSCSSQQRSIALPEYGKYESVGTVSTESITNNPNECSSSPELQQSGLPPLVSALKASAEENAATFHFPGHNRGHAAPASMTRLIGRRPYAHDLPELPELDNLFCPQGPILEAQTEAAKLFGSSKTWFLVGGTTCGIQAAIMATCSPGEFLILPRNCHLSAISAMVLSGAVPKYIVPDYKNDWDIAGGVTPLQVLSAIQELELEGKKAAAVFITSPTYHGICSNLSDISELCHYRKIPLIVDEAHGAHLGFHSELPSSALQQGADLTVQSTHKVLCSLTQSSMLHMSGDIVDKEKISRCLQTLQTTSPSYLLLASLDAARSQLSESPDTVFNQAIKLANEAKCSLKQFPGISVLENSSFPTIPAIDPLRLTVGFWELGLSGYEADEILYRDFGIVCELVGNKSITYALNLGTCRDHVQRLLSGIKHLAATYPSIQQPKDGVLTERAPFDDIITSLTPRDAFFASKRKVTIKESIGKVSGELICPYPPGIPVLIPGEVITERAVNYLLHVRSEGADISGASDPLLSSIVVCDLVGNTDEDKIGLALYGKQDPKQEAVEEEEEEEEEENGEKSTALQEYGQEDSIGTVNTASIPNNAVLFSNSPELQQSGLPPLVSALKASAEENAASFHFPGHNRGHAAPSSLTQLIGIRPYAHDLSSIPELDNLFCPQGPILEAQREASKLFGSSETWFLVNGTTCGVQAAIMTTCSPGGYLILPRNSHLSAISAMVLSGAVPKYIIPDYKNDWDIAGGVTPLQVLNAIQELESEGKKAAAVFITSPTYHGVCSNLSDISALCHSRKIPLIVDEAHGAHLGLHPELPSSALQQGADLTVQSTHKVLSSLTQSSMLHMSGDIVEKEKISRCLQTLQSTSPSYLLLASLDAARAQLSESPAIVFKQAIELANEAKFLLKRIPGVSVLENASFPNFPAFDPFRLTVGFWELGLS