AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0349410


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0349410 MtrunA17_Chr3g0082841 93.802 242 14 1 14 255 3 243 6.42e-168 463
Msa0349410 MtrunA17_Chr5g0398901 42.045 88 49 1 144 231 17 102 7.92e-12 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0349410 AT3G17670.1 52.941 221 95 1 44 255 16 236 2.83e-81 244
Msa0349410 AT3G17670.2 53.659 205 86 1 44 239 16 220 5.75e-75 229
Msa0349410 AT1G62740.1 42.045 88 49 1 144 231 17 102 3.10e-11 63.5
Msa0349410 AT1G12270.1 41.489 94 53 1 144 237 17 108 3.19e-11 63.5

Find 109 sgRNAs with CRISPR-Local

Find 209 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTGCACACCCGTATTTCTT+TGG 0.222264 3_1:+12968673 None:intergenic
TGTTAATACATCATAGGATT+TGG 0.288091 3_1:-12966079 Msa0349410:exon
ACAGGTGTGTATATGCCTTT+TGG 0.308053 3_1:-12965982 Msa0349410:three_prime_UTR
AATTAATATATATACATATC+TGG 0.309788 3_1:+12968841 None:intergenic
GTCATCAGTAAGGCTGGAAT+TGG 0.327574 3_1:-12967990 Msa0349410:CDS
GCTATAGATTTAAAACCATT+TGG 0.341600 3_1:-12968125 Msa0349410:CDS
GTGCACACCCGTATTTCTTT+GGG 0.344936 3_1:+12968674 None:intergenic
GAGAAGGGAATGGATAATTA+AGG 0.347193 3_1:+12968875 None:intergenic
GGCATTGAACAAATTCGATT+TGG 0.354216 3_1:-12966803 Msa0349410:CDS
CTGCTGCTGTTGATGTGCTT+TGG 0.354720 3_1:+12968697 None:intergenic
CTGTCAAGGTGATGCCCATT+TGG 0.356146 3_1:-12966824 Msa0349410:CDS
GGAAGGAAGCCAGCTTCGTT+TGG 0.359250 3_1:+12968727 None:intergenic
TGTAAAGTCGTCCGGTTGCT+TGG 0.362043 3_1:-12968576 Msa0349410:CDS
TGCTTCTGTTAATACATCAT+AGG 0.368387 3_1:-12966085 Msa0349410:exon
CTGCTGTTGATGTGCTTTGG+TGG 0.371178 3_1:+12968700 None:intergenic
GCCAGCTTCGTTTGGGTGAT+GGG 0.381967 3_1:+12968735 None:intergenic
GGCTCGAATAACAAAGCTTC+AGG 0.382570 3_1:-12966115 Msa0349410:CDS
CGAATTTGTTCAATGCCAAA+TGG 0.393150 3_1:+12966809 None:intergenic
TGGATAATTAAGGATAGAAT+TGG 0.405103 3_1:+12968885 None:intergenic
TGGGACGGCTGCTCGTTGTT+TGG 0.409679 3_1:-12968492 Msa0349410:CDS
TCAAAGCCTCCTTAGCATCT+TGG 0.419758 3_1:+12967948 None:intergenic
CAAATTCGATTTGGCAGAGC+AGG 0.423742 3_1:-12966794 Msa0349410:CDS
GACGACTTTACAGAGACGTT+TGG 0.431405 3_1:+12968587 None:intergenic
GAAGGAAGCCAGCTTCGTTT+GGG 0.442028 3_1:+12968728 None:intergenic
TAGCGGATGATGAGGTAATC+AGG 0.442231 3_1:+12968518 None:intergenic
AATTGGCGTGGATGCGGTTA+CGG 0.442355 3_1:+12968799 None:intergenic
TGGTGGAGGAGATAATAGTT+TGG 0.444099 3_1:-12968450 Msa0349410:CDS
GAGAGTTTCTAGAGTTTGAA+AGG 0.447053 3_1:+12968625 None:intergenic
TTGATGTGCTTTGGTGGTGC+AGG 0.447422 3_1:+12968706 None:intergenic
CGATATTCAGGTCATCAGTA+AGG 0.449045 3_1:-12968000 Msa0349410:intron
AGCAGCAGCCCAAAGAAATA+CGG 0.449885 3_1:-12968682 Msa0349410:CDS
AAGAGACTGTGGGATTGAAT+TGG 0.451131 3_1:+12968782 None:intergenic
GTAAAGTCGTCCGGTTGCTT+GGG 0.451387 3_1:-12968575 Msa0349410:CDS
AGCCAGCTTCGTTTGGGTGA+TGG 0.452814 3_1:+12968734 None:intergenic
GCTGGAATTGGGAAACTACT+TGG 0.454976 3_1:-12967978 Msa0349410:CDS
TGCACTTGCTTTGAGGAAGA+AGG 0.456114 3_1:-12968426 Msa0349410:CDS
GAGACCATGGTAAATCTGTT+TGG 0.460504 3_1:-12968470 Msa0349410:CDS
GTTTGGATGCACTTGCTTTG+AGG 0.460659 3_1:-12968433 Msa0349410:CDS
CTCTTTGTAAGCTGTCATGT+GGG 0.472330 3_1:-12968764 Msa0349410:CDS
TCAGGAAGGACCACCAGGTT+GGG 0.478230 3_1:+12968536 None:intergenic
CCGTCAGTCTAAATCATTCA+AGG 0.480103 3_1:-12966737 Msa0349410:intron
ACCACACTTACCCAAGCAAC+CGG 0.480254 3_1:+12968565 None:intergenic
AAAGGATCCTTGTTTGCGGC+AGG 0.482679 3_1:+12968643 None:intergenic
TATATATACATATCTGGAGT+TGG 0.484958 3_1:+12968847 None:intergenic
ACCTCATCATCCGCTATTGT+GGG 0.491465 3_1:-12968511 Msa0349410:CDS
TTGTTTGCGGCAGGCACGGT+TGG 0.493358 3_1:+12968652 None:intergenic
TACCTCATCATCCGCTATTG+TGG 0.494390 3_1:-12968512 Msa0349410:CDS
ATCCTTGTTTGCGGCAGGCA+CGG 0.497473 3_1:+12968648 None:intergenic
GACTTTACAGAGACGTTTGG+AGG 0.498021 3_1:+12968590 None:intergenic
ATTCAGGTCATCAGTAAGGC+TGG 0.499086 3_1:-12967996 Msa0349410:intron
TACATCATAGGATTTGGCTT+GGG 0.499162 3_1:-12966073 Msa0349410:exon
TGCTTGGGTAAGTGTGGTGC+TGG 0.500081 3_1:-12968560 Msa0349410:CDS
GTGAATTCAATTTATAGTGA+TGG 0.500362 3_1:-12966036 Msa0349410:three_prime_UTR
TACATATCTGGAGTTGGAGG+TGG 0.503140 3_1:+12968853 None:intergenic
ATACATCATAGGATTTGGCT+TGG 0.503362 3_1:-12966074 Msa0349410:exon
TCTGGAGTTGGAGGTGGAGA+AGG 0.504411 3_1:+12968859 None:intergenic
CTGGAGTTGGAGGTGGAGAA+GGG 0.510430 3_1:+12968860 None:intergenic
GAATTTGTTCAATGCCAAAT+GGG 0.511521 3_1:+12966810 None:intergenic
AACGTCTCTGTAAAGTCGTC+CGG 0.511697 3_1:-12968584 Msa0349410:CDS
GGATAGAATTGGCGTGGATG+CGG 0.513125 3_1:+12968896 None:intergenic
CCCCATCACCCAAACGAAGC+TGG 0.513382 3_1:-12968736 Msa0349410:CDS
GGTAATCAGGAAGGACCACC+AGG 0.515194 3_1:+12968531 None:intergenic
GTGTGGTGCTGGTCCCAACC+TGG 0.525731 3_1:-12968549 Msa0349410:CDS
TTGGGTCACCTCTGAATACC+CGG 0.527494 3_1:+12967916 None:intergenic
GTTGGAGGTGGAGAAGGGAA+TGG 0.530380 3_1:+12968865 None:intergenic
TCATCAGTAAGGCTGGAATT+GGG 0.533275 3_1:-12967989 Msa0349410:CDS
AACCGTGCCTGCCGCAAACA+AGG 0.534436 3_1:-12968650 Msa0349410:CDS
TACATGTCACATTTAAATGC+AGG 0.537041 3_1:-12968097 Msa0349410:intron
CAAACTCTAGAAACTCTCTC+TGG 0.537664 3_1:-12968620 Msa0349410:CDS
TGGCGTGGATGCGGTTACGG+TGG 0.540320 3_1:+12968802 None:intergenic
GTGACATGTATACCTCCAAA+TGG 0.541166 3_1:+12968110 None:intergenic
ATAGATTTAAAACCATTTGG+AGG 0.543444 3_1:-12968122 Msa0349410:CDS
AAGCCTCCTTAGCATCTTGG+AGG 0.544294 3_1:+12967951 None:intergenic
TTTGAAAGGATCCTTGTTTG+CGG 0.546105 3_1:+12968639 None:intergenic
GGGTGCCCTCCAAGATGCTA+AGG 0.548998 3_1:-12967957 Msa0349410:CDS
CCAGCTTCGTTTGGGTGATG+GGG 0.555845 3_1:+12968736 None:intergenic
GAGGCTTTGATATTAGCTCC+CGG 0.556164 3_1:-12967935 Msa0349410:CDS
TGCTCGTTGTTTGGAGACCA+TGG 0.558612 3_1:-12968483 Msa0349410:CDS
GGCGTGGATGCGGTTACGGT+GGG 0.560111 3_1:+12968803 None:intergenic
AGGCTTTGATATTAGCTCCC+GGG 0.569088 3_1:-12967934 Msa0349410:CDS
TTGCAGGCTTATATCTGTCA+AGG 0.572022 3_1:-12966838 Msa0349410:intron
ATCAGGAAGGACCACCAGGT+TGG 0.575050 3_1:+12968535 None:intergenic
GGATTGAATTGGCGTGGATG+CGG 0.576414 3_1:+12968793 None:intergenic
GCAGCAGCCCAAAGAAATAC+GGG 0.579170 3_1:-12968681 Msa0349410:CDS
CTGGAATTGGGAAACTACTT+GGG 0.586591 3_1:-12967977 Msa0349410:CDS
ATGGTAAATCTGTTTGGTGG+AGG 0.587572 3_1:-12968464 Msa0349410:CDS
ACCATGGTAAATCTGTTTGG+TGG 0.587581 3_1:-12968467 Msa0349410:CDS
GATTTAGACTGACGGATCGA+AGG 0.592838 3_1:+12966745 None:intergenic
ATATACATATCTGGAGTTGG+AGG 0.599847 3_1:+12968850 None:intergenic
TGCCCTCCAAGATGCTAAGG+AGG 0.606878 3_1:-12967954 Msa0349410:CDS
TCTCTTTGTAAGCTGTCATG+TGG 0.607011 3_1:-12968765 Msa0349410:CDS
AATTAAGGATAGAATTGGCG+TGG 0.610172 3_1:+12968890 None:intergenic
GACAGCTTACAAAGAGACTG+TGG 0.611286 3_1:+12968771 None:intergenic
TCCCACAATAGCGGATGATG+AGG 0.622946 3_1:+12968510 None:intergenic
CCTTGAATGATTTAGACTGA+CGG 0.623941 3_1:+12966737 None:intergenic
TCCGGTTGCTTGGGTAAGTG+TGG 0.639603 3_1:-12968566 Msa0349410:CDS
ATTAGCTCCCGGGTATTCAG+AGG 0.641531 3_1:-12967924 Msa0349410:intron
TACCTGCGAGAGCAAAAGCT+CGG 0.642802 3_1:+12968367 None:intergenic
GGATGATGAGGTAATCAGGA+AGG 0.643225 3_1:+12968522 None:intergenic
CATCATCCGCTATTGTGGGA+CGG 0.643341 3_1:-12968507 Msa0349410:CDS
AGCCTCCTTAGCATCTTGGA+GGG 0.654484 3_1:+12967952 None:intergenic
TGGTGCTGGTCCCAACCTGG+TGG 0.661437 3_1:-12968546 Msa0349410:CDS
TGGGTCACCTCTGAATACCC+GGG 0.661671 3_1:+12967917 None:intergenic
GAGCAGCCGTCCCACAATAG+CGG 0.664827 3_1:+12968501 None:intergenic
ACAGCTTACAAAGAGACTGT+GGG 0.668910 3_1:+12968772 None:intergenic
TCTTTGTAAGCTGTCATGTG+GGG 0.668932 3_1:-12968763 Msa0349410:CDS
TGTGCTTTGGTGGTGCAGGA+AGG 0.673056 3_1:+12968710 None:intergenic
TCCACCAAACAGATTTACCA+TGG 0.683060 3_1:+12968466 None:intergenic
ACTGTGGGATTGAATTGGCG+TGG 0.696617 3_1:+12968787 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAATATATATACATATC+TGG + chr3_1:12965974-12965993 None:intergenic 10.0%
!!! TTATTTTTTGATGAATTAAT+CGG - chr3_1:12968579-12968598 Msa0349410:CDS 10.0%
!!! TTTTTTTTTTTTATCTTAAC+AGG - chr3_1:12968812-12968831 Msa0349410:CDS 10.0%
!!! ACATATAATAATTTTGATTC+GGG + chr3_1:12966750-12966769 None:intergenic 15.0%
!!! CACATATAATAATTTTGATT+CGG + chr3_1:12966751-12966770 None:intergenic 15.0%
!! CAAAATTATTATATGTGTAT+TGG - chr3_1:12966754-12966773 Msa0349410:CDS 15.0%
!! ATTTGTAATAACAAGTTAAA+TGG - chr3_1:12967150-12967169 Msa0349410:intron 15.0%
!! AAAAAAAAAAATCATTCATG+TGG + chr3_1:12968802-12968821 None:intergenic 15.0%
!! AATAAAATACAAAAACCAAA+AGG + chr3_1:12968848-12968867 None:intergenic 15.0%
!!! GGTTTTTGTATTTTATTATA+AGG - chr3_1:12968851-12968870 Msa0349410:five_prime_UTR 15.0%
!! AATATCGAAATAAGAACAAT+TGG + chr3_1:12966799-12966818 None:intergenic 20.0%
!! ACAAAAGAATATGAGAATTT+GGG + chr3_1:12966917-12966936 None:intergenic 20.0%
!! TACAAAAGAATATGAGAATT+TGG + chr3_1:12966918-12966937 None:intergenic 20.0%
!! AGCATTTGTAATTAATAAAG+TGG + chr3_1:12967107-12967126 None:intergenic 20.0%
!!! TTTCAAAACACTTGTTATAT+TGG + chr3_1:12967186-12967205 None:intergenic 20.0%
!!! ATATTTTTTTGATCCTTTTG+AGG - chr3_1:12967220-12967239 Msa0349410:intron 20.0%
!!! ATAAGAATTGATTTAGCATT+CGG + chr3_1:12967321-12967340 None:intergenic 20.0%
!! CATAGATCTCAAAAATTTAT+GGG + chr3_1:12968200-12968219 None:intergenic 20.0%
!! ACATAGATCTCAAAAATTTA+TGG + chr3_1:12968201-12968220 None:intergenic 20.0%
!! TTGTTTCAATTGTTATATAC+TGG - chr3_1:12968547-12968566 Msa0349410:CDS 20.0%
! TGGATAATTAAGGATAGAAT+TGG + chr3_1:12965930-12965949 None:intergenic 25.0%
!! TATATATACATATCTGGAGT+TGG + chr3_1:12965968-12965987 None:intergenic 25.0%
!! GCTATAGATTTAAAACCATT+TGG - chr3_1:12966687-12966706 Msa0349410:intron 25.0%
!! ATAGATTTAAAACCATTTGG+AGG - chr3_1:12966690-12966709 Msa0349410:intron 25.0%
!! TTGTTCTTATTTCGATATTC+AGG - chr3_1:12966800-12966819 Msa0349410:CDS 25.0%
! GATAATAGGATATTGATAGA+TGG + chr3_1:12966949-12966968 None:intergenic 25.0%
! ACAAAATTATAAGCCGATAT+TGG - chr3_1:12967403-12967422 Msa0349410:intron 25.0%
!!! TTGAATCTTGAGTTATTTTG+AGG + chr3_1:12967436-12967455 None:intergenic 25.0%
! TGCTTGGAATTAATAATGAT+TGG - chr3_1:12967609-12967628 Msa0349410:intron 25.0%
! GCTTGGAATTAATAATGATT+GGG - chr3_1:12967610-12967629 Msa0349410:intron 25.0%
! ATTGATGTTTGTTTAAACGT+AGG + chr3_1:12967890-12967909 None:intergenic 25.0%
! TATTTCTTTATTCACTTTGC+AGG - chr3_1:12967958-12967977 Msa0349410:CDS 25.0%
!! TTAAATCTCAAGAGCTTTTT+GGG + chr3_1:12968355-12968374 None:intergenic 25.0%
!! TTTAAATCTCAAGAGCTTTT+TGG + chr3_1:12968356-12968375 None:intergenic 25.0%
! CTCTTGAGATTTAAATGTTT+AGG - chr3_1:12968361-12968380 Msa0349410:intron 25.0%
!!! TTATTTGATCGAGGTATTTT+AGG - chr3_1:12968384-12968403 Msa0349410:CDS 25.0%
! TGTTAATACATCATAGGATT+TGG - chr3_1:12968733-12968752 Msa0349410:CDS 25.0%
! GTGAATTCAATTTATAGTGA+TGG - chr3_1:12968776-12968795 Msa0349410:CDS 25.0%
TCTCAAATTATTAGCTGTGT+CGG - chr3_1:12966525-12966544 Msa0349410:intron 30.0%
TACATGTCACATTTAAATGC+AGG - chr3_1:12966715-12966734 Msa0349410:intron 30.0%
! TAGTTTTCAGCAAGGATAAT+AGG + chr3_1:12966963-12966982 None:intergenic 30.0%
! GTTACTAATAGTTTTCAGCA+AGG + chr3_1:12966971-12966990 None:intergenic 30.0%
CTTCAAATACTTATACGGAA+AGG + chr3_1:12967250-12967269 None:intergenic 30.0%
TGATTTAGCATTCGGAAAAT+AGG + chr3_1:12967313-12967332 None:intergenic 30.0%
TTGAGGTTTGTATCCAATAT+CGG + chr3_1:12967419-12967438 None:intergenic 30.0%
TACAAAGTTGACAAAAAGAG+TGG - chr3_1:12967493-12967512 Msa0349410:intron 30.0%
AAAATATGAGAAACACGCAT+GGG + chr3_1:12967717-12967736 None:intergenic 30.0%
! AATGTCACAACAAGAGATTT+TGG - chr3_1:12967788-12967807 Msa0349410:intron 30.0%
! GAATTTGTTCAATGCCAAAT+GGG + chr3_1:12968005-12968024 None:intergenic 30.0%
! ATGTTTAGGTTATTTGATCG+AGG - chr3_1:12968375-12968394 Msa0349410:CDS 30.0%
TAGTTGTAACTGATCAATGA+GGG + chr3_1:12968464-12968483 None:intergenic 30.0%
ATAGTTGTAACTGATCAATG+AGG + chr3_1:12968465-12968484 None:intergenic 30.0%
ATTTGAAGGGGAAATTCTAT+TGG - chr3_1:12968640-12968659 Msa0349410:CDS 30.0%
TGCTTCTGTTAATACATCAT+AGG - chr3_1:12968727-12968746 Msa0349410:CDS 30.0%
AATTAAGGATAGAATTGGCG+TGG + chr3_1:12965925-12965944 None:intergenic 35.0%
GAGAAGGGAATGGATAATTA+AGG + chr3_1:12965940-12965959 None:intergenic 35.0%
! ATATACATATCTGGAGTTGG+AGG + chr3_1:12965965-12965984 None:intergenic 35.0%
! TTTGAAAGGATCCTTGTTTG+CGG + chr3_1:12966176-12966195 None:intergenic 35.0%
!! GAGAGTTTCTAGAGTTTGAA+AGG + chr3_1:12966190-12966209 None:intergenic 35.0%
AGAGAAGAAAAATTTCGCTG+AGG - chr3_1:12966422-12966441 Msa0349410:intron 35.0%
AATTATACGTGTGTTAGTGC+AGG + chr3_1:12966486-12966505 None:intergenic 35.0%
! ATGTTAGTTGAAAGCATAGC+TGG + chr3_1:12966643-12966662 None:intergenic 35.0%
TTGATTGATTGATGCATTGC+AGG - chr3_1:12966665-12966684 Msa0349410:intron 35.0%
GTCACATTTAAATGCAGGTA+TGG - chr3_1:12966720-12966739 Msa0349410:intron 35.0%
TTAGCTAAACTGTTAAGGAC+CGG + chr3_1:12967062-12967081 None:intergenic 35.0%
TGAGCTTAGCTAAACTGTTA+AGG + chr3_1:12967067-12967086 None:intergenic 35.0%
CCGTGCTTCAAATACTTATA+CGG + chr3_1:12967255-12967274 None:intergenic 35.0%
! CCGTATAAGTATTTGAAGCA+CGG - chr3_1:12967252-12967271 Msa0349410:intron 35.0%
ACTGAGATTCAAATCGTGAT+TGG - chr3_1:12967282-12967301 Msa0349410:intron 35.0%
! TTCCAAGCATGCATCTATTT+TGG + chr3_1:12967598-12967617 None:intergenic 35.0%
AACATACGATCCACATGTAT+CGG - chr3_1:12967652-12967671 Msa0349410:intron 35.0%
TTAGTATCTTCCGATACATG+TGG + chr3_1:12967665-12967684 None:intergenic 35.0%
TTGAGTTAGCATTCAGAACA+TGG + chr3_1:12967691-12967710 None:intergenic 35.0%
CAAAATATGAGAAACACGCA+TGG + chr3_1:12967718-12967737 None:intergenic 35.0%
! CATGCGTGTTTCTCATATTT+TGG - chr3_1:12967716-12967735 Msa0349410:intron 35.0%
AATGATCATACCCTCATTGA+TGG + chr3_1:12967847-12967866 None:intergenic 35.0%
! CGAATTTGTTCAATGCCAAA+TGG + chr3_1:12968006-12968025 None:intergenic 35.0%
! GGCATTGAACAAATTCGATT+TGG - chr3_1:12968009-12968028 Msa0349410:intron 35.0%
CCTTGAATGATTTAGACTGA+CGG + chr3_1:12968078-12968097 None:intergenic 35.0%
TTGTCAATATAGCTGTGTAG+TGG - chr3_1:12968271-12968290 Msa0349410:intron 35.0%
TTGCACGTGTACAAATTTGA+AGG - chr3_1:12968626-12968645 Msa0349410:CDS 35.0%
TGCACGTGTACAAATTTGAA+GGG - chr3_1:12968627-12968646 Msa0349410:CDS 35.0%
ATACATCATAGGATTTGGCT+TGG - chr3_1:12968738-12968757 Msa0349410:CDS 35.0%
! TACATCATAGGATTTGGCTT+GGG - chr3_1:12968739-12968758 Msa0349410:CDS 35.0%
AAGAGACTGTGGGATTGAAT+TGG + chr3_1:12966033-12966052 None:intergenic 40.0%
ACAGCTTACAAAGAGACTGT+GGG + chr3_1:12966043-12966062 None:intergenic 40.0%
TCTCTTTGTAAGCTGTCATG+TGG - chr3_1:12966047-12966066 Msa0349410:three_prime_UTR 40.0%
CTCTTTGTAAGCTGTCATGT+GGG - chr3_1:12966048-12966067 Msa0349410:three_prime_UTR 40.0%
TCTTTGTAAGCTGTCATGTG+GGG - chr3_1:12966049-12966068 Msa0349410:three_prime_UTR 40.0%
! CAAACTCTAGAAACTCTCTC+TGG - chr3_1:12966192-12966211 Msa0349410:intron 40.0%
GAGACCATGGTAAATCTGTT+TGG - chr3_1:12966342-12966361 Msa0349410:intron 40.0%
ACCATGGTAAATCTGTTTGG+TGG - chr3_1:12966345-12966364 Msa0349410:intron 40.0%
TCCACCAAACAGATTTACCA+TGG + chr3_1:12966349-12966368 None:intergenic 40.0%
! ATGGTAAATCTGTTTGGTGG+AGG - chr3_1:12966348-12966367 Msa0349410:intron 40.0%
TGGTGGAGGAGATAATAGTT+TGG - chr3_1:12966362-12966381 Msa0349410:intron 40.0%
! GTAAATGTCCGTGTCTTGTT+AGG - chr3_1:12966551-12966570 Msa0349410:intron 40.0%
CATAGACACCTAACAAGACA+CGG + chr3_1:12966562-12966581 None:intergenic 40.0%
TTGTTACGAGCTATGAAGCA+TGG + chr3_1:12966592-12966611 None:intergenic 40.0%
GTGACATGTATACCTCCAAA+TGG + chr3_1:12966705-12966724 None:intergenic 40.0%
CGATATTCAGGTCATCAGTA+AGG - chr3_1:12966812-12966831 Msa0349410:CDS 40.0%
TCATCAGTAAGGCTGGAATT+GGG - chr3_1:12966823-12966842 Msa0349410:CDS 40.0%
CTGGAATTGGGAAACTACTT+GGG - chr3_1:12966835-12966854 Msa0349410:CDS 40.0%
AGCCTAGAGTCTAGAAATTC+CGG - chr3_1:12967026-12967045 Msa0349410:intron 40.0%
AAAGAGTGGCTACGAAGTTT+AGG - chr3_1:12967507-12967526 Msa0349410:intron 40.0%
GTCCAAAATAGATGCATGCT+TGG - chr3_1:12967593-12967612 Msa0349410:intron 40.0%
CTGATTGTTGCCAAAATCCA+TGG - chr3_1:12967761-12967780 Msa0349410:intron 40.0%
! ATCATACCCTCATTGATGGT+CGG + chr3_1:12967843-12967862 None:intergenic 40.0%
TTGCAGGCTTATATCTGTCA+AGG - chr3_1:12967974-12967993 Msa0349410:CDS 40.0%
CCGTCAGTCTAAATCATTCA+AGG - chr3_1:12968075-12968094 Msa0349410:intron 40.0%
CATTACCTGCATTTGTTCGA+AGG - chr3_1:12968148-12968167 Msa0349410:intron 40.0%
ATCTTCCTTCGAACAAATGC+AGG + chr3_1:12968156-12968175 None:intergenic 40.0%
AGTGGTACAGTTTAGTGTAG+CGG - chr3_1:12968289-12968308 Msa0349410:intron 40.0%
GAAATATGACAGCATGAGTG+AGG + chr3_1:12968440-12968459 None:intergenic 40.0%
GCACGTGTACAAATTTGAAG+GGG - chr3_1:12968628-12968647 Msa0349410:CDS 40.0%
TATTCGAGCCTGCTTAAACA+TGG + chr3_1:12968687-12968706 None:intergenic 40.0%
! ACAGGTGTGTATATGCCTTT+TGG - chr3_1:12968830-12968849 Msa0349410:exon 40.0%
! TACATATCTGGAGTTGGAGG+TGG + chr3_1:12965962-12965981 None:intergenic 45.0%
GACAGCTTACAAAGAGACTG+TGG + chr3_1:12966044-12966063 None:intergenic 45.0%
AGCAGCAGCCCAAAGAAATA+CGG - chr3_1:12966130-12966149 Msa0349410:intron 45.0%
GTGCACACCCGTATTTCTTT+GGG + chr3_1:12966141-12966160 None:intergenic 45.0%
GACTTTACAGAGACGTTTGG+AGG + chr3_1:12966225-12966244 None:intergenic 45.0%
GACGACTTTACAGAGACGTT+TGG + chr3_1:12966228-12966247 None:intergenic 45.0%
AACGTCTCTGTAAAGTCGTC+CGG - chr3_1:12966228-12966247 Msa0349410:intron 45.0%
GGATGATGAGGTAATCAGGA+AGG + chr3_1:12966293-12966312 None:intergenic 45.0%
! TAGCGGATGATGAGGTAATC+AGG + chr3_1:12966297-12966316 None:intergenic 45.0%
TACCTCATCATCCGCTATTG+TGG - chr3_1:12966300-12966319 Msa0349410:intron 45.0%
ACCTCATCATCCGCTATTGT+GGG - chr3_1:12966301-12966320 Msa0349410:intron 45.0%
GTTTGGATGCACTTGCTTTG+AGG - chr3_1:12966379-12966398 Msa0349410:intron 45.0%
!! TGCACTTGCTTTGAGGAAGA+AGG - chr3_1:12966386-12966405 Msa0349410:intron 45.0%
CGAGCTATGAAGCATGGATA+CGG + chr3_1:12966586-12966605 None:intergenic 45.0%
CACACACATCATCAGTTGTC+TGG + chr3_1:12966618-12966637 None:intergenic 45.0%
ATTCAGGTCATCAGTAAGGC+TGG - chr3_1:12966816-12966835 Msa0349410:CDS 45.0%
GTCATCAGTAAGGCTGGAAT+TGG - chr3_1:12966822-12966841 Msa0349410:CDS 45.0%
GCTGGAATTGGGAAACTACT+TGG - chr3_1:12966834-12966853 Msa0349410:CDS 45.0%
TCAAAGCCTCCTTAGCATCT+TGG + chr3_1:12966867-12966886 None:intergenic 45.0%
! GAGGCTTTGATATTAGCTCC+CGG - chr3_1:12966877-12966896 Msa0349410:intron 45.0%
! AGGCTTTGATATTAGCTCCC+GGG - chr3_1:12966878-12966897 Msa0349410:intron 45.0%
TCTAGACTCTAGGCTAAACG+TGG + chr3_1:12967021-12967040 None:intergenic 45.0%
GCCTAGAGTCTAGAAATTCC+GGG - chr3_1:12967027-12967046 Msa0349410:intron 45.0%
! TCCCGGAATTTCTAGACTCT+AGG + chr3_1:12967031-12967050 None:intergenic 45.0%
AAATTCCGGGATTCGAACTC+CGG - chr3_1:12967040-12967059 Msa0349410:intron 45.0%
ACAGTTTAGCTAAGCTCACG+AGG - chr3_1:12967069-12967088 Msa0349410:intron 45.0%
ACGGAAAGGAGAACCTCAAA+AGG + chr3_1:12967236-12967255 None:intergenic 45.0%
ATATGAGAAACACGCATGGG+AGG + chr3_1:12967714-12967733 None:intergenic 45.0%
! GACATTGCAGCCATGGATTT+TGG + chr3_1:12967774-12967793 None:intergenic 45.0%
TTGTTGTGACATTGCAGCCA+TGG + chr3_1:12967781-12967800 None:intergenic 45.0%
!! CAAATTCGATTTGGCAGAGC+AGG - chr3_1:12968018-12968037 Msa0349410:intron 45.0%
! GATTTAGACTGACGGATCGA+AGG + chr3_1:12968070-12968089 None:intergenic 45.0%
CTCCTCATCCATGTTTAAGC+AGG - chr3_1:12968676-12968695 Msa0349410:CDS 45.0%
AGCCTGCTTAAACATGGATG+AGG + chr3_1:12968681-12968700 None:intergenic 45.0%
GGCTCGAATAACAAAGCTTC+AGG - chr3_1:12968697-12968716 Msa0349410:CDS 45.0%
!! AATAAATTAATAATGATTTA+CGG - chr3_1:12967919-12967938 Msa0349410:intron 5.0%
GGATAGAATTGGCGTGGATG+CGG + chr3_1:12965919-12965938 None:intergenic 50.0%
AATTGGCGTGGATGCGGTTA+CGG + chr3_1:12966016-12966035 None:intergenic 50.0%
GGATTGAATTGGCGTGGATG+CGG + chr3_1:12966022-12966041 None:intergenic 50.0%
ACTGTGGGATTGAATTGGCG+TGG + chr3_1:12966028-12966047 None:intergenic 50.0%
GAAGGAAGCCAGCTTCGTTT+GGG + chr3_1:12966087-12966106 None:intergenic 50.0%
!! TTGATGTGCTTTGGTGGTGC+AGG + chr3_1:12966109-12966128 None:intergenic 50.0%
CTGCTGTTGATGTGCTTTGG+TGG + chr3_1:12966115-12966134 None:intergenic 50.0%
CTGCTGCTGTTGATGTGCTT+TGG + chr3_1:12966118-12966137 None:intergenic 50.0%
GCAGCAGCCCAAAGAAATAC+GGG - chr3_1:12966131-12966150 Msa0349410:intron 50.0%
GGTGCACACCCGTATTTCTT+TGG + chr3_1:12966142-12966161 None:intergenic 50.0%
! AAAGGATCCTTGTTTGCGGC+AGG + chr3_1:12966172-12966191 None:intergenic 50.0%
TGTAAAGTCGTCCGGTTGCT+TGG - chr3_1:12966236-12966255 Msa0349410:intron 50.0%
GTAAAGTCGTCCGGTTGCTT+GGG - chr3_1:12966237-12966256 Msa0349410:intron 50.0%
ACCACACTTACCCAAGCAAC+CGG + chr3_1:12966250-12966269 None:intergenic 50.0%
!! TCCCACAATAGCGGATGATG+AGG + chr3_1:12966305-12966324 None:intergenic 50.0%
CATCATCCGCTATTGTGGGA+CGG - chr3_1:12966305-12966324 Msa0349410:intron 50.0%
TGCTCGTTGTTTGGAGACCA+TGG - chr3_1:12966329-12966348 Msa0349410:intron 50.0%
TACCTGCGAGAGCAAAAGCT+CGG + chr3_1:12966448-12966467 None:intergenic 50.0%
AGCCTCCTTAGCATCTTGGA+GGG + chr3_1:12966863-12966882 None:intergenic 50.0%
AAGCCTCCTTAGCATCTTGG+AGG + chr3_1:12966864-12966883 None:intergenic 50.0%
ATTAGCTCCCGGGTATTCAG+AGG - chr3_1:12966888-12966907 Msa0349410:intron 50.0%
TTGGGTCACCTCTGAATACC+CGG + chr3_1:12966899-12966918 None:intergenic 50.0%
ACTCTAGGCTAAACGTGGCA+AGG + chr3_1:12967016-12967035 None:intergenic 50.0%
TTGCCTACCGACCATCAATG+AGG - chr3_1:12967833-12967852 Msa0349410:intron 50.0%
TGCCTACCGACCATCAATGA+GGG - chr3_1:12967834-12967853 Msa0349410:intron 50.0%
! TACCCTCATTGATGGTCGGT+AGG + chr3_1:12967839-12967858 None:intergenic 50.0%
CTGTCAAGGTGATGCCCATT+TGG - chr3_1:12967988-12968007 Msa0349410:CDS 50.0%
AGTGAGGCAAAGCAAGAGAG+AGG + chr3_1:12968424-12968443 None:intergenic 50.0%
GTTGGAGGTGGAGAAGGGAA+TGG + chr3_1:12965950-12965969 None:intergenic 55.0%
CTGGAGTTGGAGGTGGAGAA+GGG + chr3_1:12965955-12965974 None:intergenic 55.0%
! TCTGGAGTTGGAGGTGGAGA+AGG + chr3_1:12965956-12965975 None:intergenic 55.0%
CCAGCTTCGTTTGGGTGATG+GGG + chr3_1:12966079-12966098 None:intergenic 55.0%
GCCAGCTTCGTTTGGGTGAT+GGG + chr3_1:12966080-12966099 None:intergenic 55.0%
AGCCAGCTTCGTTTGGGTGA+TGG + chr3_1:12966081-12966100 None:intergenic 55.0%
GGAAGGAAGCCAGCTTCGTT+TGG + chr3_1:12966088-12966107 None:intergenic 55.0%
!! TGTGCTTTGGTGGTGCAGGA+AGG + chr3_1:12966105-12966124 None:intergenic 55.0%
! ATCCTTGTTTGCGGCAGGCA+CGG + chr3_1:12966167-12966186 None:intergenic 55.0%
TCCGGTTGCTTGGGTAAGTG+TGG - chr3_1:12966246-12966265 Msa0349410:intron 55.0%
TGCTTGGGTAAGTGTGGTGC+TGG - chr3_1:12966252-12966271 Msa0349410:intron 55.0%
TCAGGAAGGACCACCAGGTT+GGG + chr3_1:12966279-12966298 None:intergenic 55.0%
ATCAGGAAGGACCACCAGGT+TGG + chr3_1:12966280-12966299 None:intergenic 55.0%
GGTAATCAGGAAGGACCACC+AGG + chr3_1:12966284-12966303 None:intergenic 55.0%
CGTGTGTTAGTGCAGGCTAC+AGG + chr3_1:12966479-12966498 None:intergenic 55.0%
TGCCCTCCAAGATGCTAAGG+AGG - chr3_1:12966858-12966877 Msa0349410:intron 55.0%
TGGGTCACCTCTGAATACCC+GGG + chr3_1:12966898-12966917 None:intergenic 55.0%
AAGGACCGGAGTTCGAATCC+CGG + chr3_1:12967048-12967067 None:intergenic 55.0%
CCCCATCACCCAAACGAAGC+TGG - chr3_1:12966076-12966095 Msa0349410:exon 60.0%
TTGTTTGCGGCAGGCACGGT+TGG + chr3_1:12966163-12966182 None:intergenic 60.0%
AACCGTGCCTGCCGCAAACA+AGG - chr3_1:12966162-12966181 Msa0349410:intron 60.0%
GAGCAGCCGTCCCACAATAG+CGG + chr3_1:12966314-12966333 None:intergenic 60.0%
TGGGACGGCTGCTCGTTGTT+TGG - chr3_1:12966320-12966339 Msa0349410:intron 60.0%
GGGTGCCCTCCAAGATGCTA+AGG - chr3_1:12966855-12966874 Msa0349410:intron 60.0%
GGCGTGGATGCGGTTACGGT+GGG + chr3_1:12966012-12966031 None:intergenic 65.0%
TGGCGTGGATGCGGTTACGG+TGG + chr3_1:12966013-12966032 None:intergenic 65.0%
!! GTGTGGTGCTGGTCCCAACC+TGG - chr3_1:12966263-12966282 Msa0349410:intron 65.0%
!! TGGTGCTGGTCCCAACCTGG+TGG - chr3_1:12966266-12966285 Msa0349410:intron 65.0%
! GGCCGAGCTTTTGCTCTCGC+AGG - chr3_1:12966443-12966462 Msa0349410:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 12965900 12968934 12965900 ID=Msa0349410;Name=Msa0349410
chr3_1 mRNA 12965900 12968934 12965900 ID=Msa0349410-mRNA-1;Parent=Msa0349410;Name=Msa0349410-mRNA-1;_AED=0.19;_eAED=0.19;_QI=103|1|1|1|1|1|5|186|255
chr3_1 exon 12965900 12966136 12965900 ID=Msa0349410-mRNA-1:exon:3317;Parent=Msa0349410-mRNA-1
chr3_1 exon 12966738 12966854 12966738 ID=Msa0349410-mRNA-1:exon:3316;Parent=Msa0349410-mRNA-1
chr3_1 exon 12967925 12968012 12967925 ID=Msa0349410-mRNA-1:exon:3315;Parent=Msa0349410-mRNA-1
chr3_1 exon 12968098 12968147 12968098 ID=Msa0349410-mRNA-1:exon:3314;Parent=Msa0349410-mRNA-1
chr3_1 exon 12968370 12968934 12968370 ID=Msa0349410-mRNA-1:exon:3313;Parent=Msa0349410-mRNA-1
chr3_1 five_prime_UTR 12968832 12968934 12968832 ID=Msa0349410-mRNA-1:five_prime_utr;Parent=Msa0349410-mRNA-1
chr3_1 CDS 12968370 12968831 12968370 ID=Msa0349410-mRNA-1:cds;Parent=Msa0349410-mRNA-1
chr3_1 CDS 12968098 12968147 12968098 ID=Msa0349410-mRNA-1:cds;Parent=Msa0349410-mRNA-1
chr3_1 CDS 12967925 12968012 12967925 ID=Msa0349410-mRNA-1:cds;Parent=Msa0349410-mRNA-1
chr3_1 CDS 12966738 12966854 12966738 ID=Msa0349410-mRNA-1:cds;Parent=Msa0349410-mRNA-1
chr3_1 CDS 12966086 12966136 12966086 ID=Msa0349410-mRNA-1:cds;Parent=Msa0349410-mRNA-1
chr3_1 three_prime_UTR 12965900 12966085 12965900 ID=Msa0349410-mRNA-1:three_prime_utr;Parent=Msa0349410-mRNA-1
Gene Sequence

>Msa0349410

ATGAATCCCACCGTAACCGCATCCACGCCAATTCAATCCCACAGTCTCTTTGTAAGCTGTCATGTGGGGACATCCCCATCACCCAAACGAAGCTGGCTTCCTTCCTGCACCACCAAAGCACATCAACAGCAGCAGCCCAAAGAAATACGGGTGTGCACCAACCGTGCCTGCCGCAAACAAGGATCCTTTCAAACTCTAGAAACTCTCTCTGGTATCGCTCCTCCAAACGTCTCTGTAAAGTCGTCCGGTTGCTTGGGTAAGTGTGGTGCTGGTCCCAACCTGGTGGTCCTTCCTGATTACCTCATCATCCGCTATTGTGGGACGGCTGCTCGTTGTTTGGAGACCATGGTAAATCTGTTTGGTGGAGGAGATAATAGTTTGGATGCACTTGCTTTGAGGAAGAAGGCTGATGTTGAGTTAGAGAAGAAAAATTTCGCTGAGGCCGAGCTTTTGCTCTCGCAGGCTATAGATTTAAAACCATTTGGAGGTATACATGTCACATTTAAATGCAGGTCATCAGTAAGGCTGGAATTGGGAAACTACTTGGGTGCCCTCCAAGATGCTAAGGAGGCTTTGATATTAGCTCCCGGGTATTCAGAGGCTTATATCTGTCAAGGTGATGCCCATTTGGCATTGAACAAATTCGATTTGGCAGAGCAGGCATATTTAGCATGTTTAGATATAGATCCTTCGATCCGTCAGTCTAAATCATTCAAGGCTCGAATAACAAAGCTTCAGGAAAAACTTGCTTCTGTTAATACATCATAG

Protein sequence

>Msa0349410

MNPTVTASTPIQSHSLFVSCHVGTSPSPKRSWLPSCTTKAHQQQQPKEIRVCTNRACRKQGSFQTLETLSGIAPPNVSVKSSGCLGKCGAGPNLVVLPDYLIIRYCGTAARCLETMVNLFGGGDNSLDALALRKKADVELEKKNFAEAELLLSQAIDLKPFGGIHVTFKCRSSVRLELGNYLGALQDAKEALILAPGYSEAYICQGDAHLALNKFDLAEQAYLACLDIDPSIRQSKSFKARITKLQEKLASVNTS*