AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0360200

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0360200 MtrunA17_Chr3g0097801 97.207 537 15 0 1 537 1 537 0.0 1064
Msa0360200 MtrunA17_Chr2g0279961 34.014 441 250 11 90 520 179 588 6.89e-49 178
Msa0360200 MtrunA17_Chr3g0130801 31.938 454 249 14 78 515 239 648 8.47e-45 167
Msa0360200 MtrunA17_Chr8g0384851 30.995 442 257 11 85 515 181 585 2.27e-41 157
Msa0360200 MtrunA17_Chr8g0377701 32.298 322 196 6 1 316 13 318 3.18e-36 141
Msa0360200 MtrunA17_Chr8g0377681 33.221 298 183 6 18 308 18 306 2.07e-34 136
Msa0360200 MtrunA17_Chr8g0377651 26.223 511 308 15 46 531 44 510 1.51e-33 134
Msa0360200 MtrunA17_Chr4g0037521 26.960 523 291 15 37 520 29 499 6.86e-33 131
Msa0360200 MtrunA17_Chr8g0377691 33.094 278 175 5 46 316 44 317 1.24e-32 131
Msa0360200 MtrunA17_Chr8g0377641 30.719 306 194 6 17 316 21 314 1.71e-32 130
Msa0360200 MtrunA17_Chr8g0385461 31.020 245 153 4 43 282 163 396 5.29e-30 124
Msa0360200 MtrunA17_Chr1g0191741 46.429 112 60 0 141 252 63 174 7.59e-23 101
Msa0360200 MtrunA17_Chr4g0050371 45.631 103 56 0 151 253 119 221 2.67e-19 91.3
Msa0360200 MtrunA17_Chr8g0393041 41.441 111 65 0 143 253 101 211 6.02e-12 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0360200 AT3G25660.1 73.371 537 136 3 3 534 1 535 0.0 767
Msa0360200 AT5G64440.1 28.719 484 293 12 52 520 143 589 4.52e-45 168
Msa0360200 AT4G34880.2 26.984 504 288 16 46 520 48 500 2.69e-30 124
Msa0360200 AT5G07360.1 29.876 241 155 3 43 278 205 436 9.29e-28 118
Msa0360200 AT5G07360.3 29.876 241 155 3 43 278 205 436 9.29e-28 118
Msa0360200 AT5G07360.2 29.876 241 148 4 43 278 205 429 3.42e-26 113
Msa0360200 AT1G08980.1 45.299 117 64 0 141 257 64 180 3.42e-22 99.8
Msa0360200 AT4G34880.1 23.553 501 269 17 43 520 45 454 4.06e-20 93.6
Msa0360200 AT5G09420.1 35.260 173 106 3 141 313 107 273 2.97e-19 91.7
Msa0360200 AT3G17970.2 40.909 110 65 0 144 253 97 206 1.08e-15 80.5
Msa0360200 AT3G17970.1 41.905 105 61 0 149 253 102 206 1.25e-15 80.5

Find 210 sgRNAs with CRISPR-Local

Find 630 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTGAAGCTTCTGCATTTC+AGG 0.094048 3_1:-48987376 Msa0360200:intron
GACATTACAGGCAAATATTT+TGG 0.147728 3_1:-48980123 Msa0360200:three_prime_UTR
CCAACCCGTGGGATGTTAAT+AGG 0.184295 3_1:-48985687 Msa0360200:CDS
CCTTCAGCTGCTTATAAAAT+TGG 0.189323 3_1:-48983850 Msa0360200:intron
GTCAAAATGAGATAGAAAAT+TGG 0.232450 3_1:+48985155 None:intergenic
CTTGATGCCATTGGCTGCTT+TGG 0.241283 3_1:-48985484 Msa0360200:CDS
GAGGAAGTTGGTCCTCTTGC+TGG 0.242177 3_1:-48987576 Msa0360200:CDS
CTTGAAGCTATTCCTTATAA+TGG 0.275796 3_1:+48983915 None:intergenic
GAAAATTTGGTTGACATTAC+AGG 0.277069 3_1:-48980135 Msa0360200:three_prime_UTR
TACCAAATAGAAGGAAAATT+TGG 0.281683 3_1:-48980148 Msa0360200:three_prime_UTR
GGTTCATCTGTCGCTGATGC+TGG 0.285798 3_1:-48985463 Msa0360200:CDS
TGGCTGAAGCAGGTATGTTT+AGG 0.296796 3_1:-48980182 Msa0360200:three_prime_UTR
TGTTGTTGGGAAGACGAATA+TGG 0.330954 3_1:-48987421 Msa0360200:CDS
CCATGTGGATTTATTGAGAA+TGG 0.335224 3_1:-48982863 Msa0360200:CDS
TGGTCACACATGATTGAATC+TGG 0.337048 3_1:-48980103 Msa0360200:three_prime_UTR
TGTCTCGCTATGATGGTATT+AGG 0.343270 3_1:-48984785 Msa0360200:intron
TGGTGTTCTTGTTGCTGTTA+AGG 0.344765 3_1:-48987556 Msa0360200:CDS
TATGGGCGCGTCTCAAGATT+TGG 0.346456 3_1:-48985529 Msa0360200:CDS
GGGATTGGTCGGAAGGGAAG+TGG 0.347501 3_1:+48987643 None:intergenic
CCCTTGAAAGGACTGAGAAT+TGG 0.350069 3_1:-48985108 Msa0360200:CDS
CCTGTTGGCCTGCAAATGAT+TGG 0.354266 3_1:-48982827 Msa0360200:CDS
ATTCTCCTCCATGCAATTGC+TGG 0.372958 3_1:-48985439 Msa0360200:CDS
ATGCTGCACCAATCATTTGC+AGG 0.388800 3_1:+48982819 None:intergenic
ATTTGAAATTCTACCGGCTA+TGG 0.390931 3_1:-48979788 Msa0360200:three_prime_UTR
AGTGGAGGAAGGAACGGAGG+TGG 0.394306 3_1:+48987661 None:intergenic
AAGACGAATATGGATGAGTT+TGG 0.396095 3_1:-48987411 Msa0360200:CDS
CGGTCAGACGGAGGCGGGTG+AGG 0.402657 3_1:+48987688 None:intergenic
GGGGTGCGGTGGTAGGTTGG+GGG 0.403036 3_1:+48987784 None:intergenic
GAGTTGGGTGGGATTGTTGT+TGG 0.403136 3_1:-48987435 Msa0360200:CDS
AACAGGTGAGAACCATTATA+AGG 0.404504 3_1:-48983927 Msa0360200:intron
CGAGGATACTTGAGGGTTAT+CGG 0.406609 3_1:-48987494 Msa0360200:CDS
TCAAAATGAGATAGAAAATT+GGG 0.409705 3_1:+48985156 None:intergenic
ACCAATTCTCAGTCCTTTCA+AGG 0.410994 3_1:+48985107 None:intergenic
AGAGAGTGGAACGTGGGGTT+TGG 0.412341 3_1:+48987859 None:intergenic
GAAGGAACGGAGGTGGGGTT+CGG 0.415482 3_1:+48987668 None:intergenic
CAACCCGTGGGATGTTAATA+GGG 0.416432 3_1:-48985686 Msa0360200:CDS
GGGGTTCGGTCAGACGGAGG+CGG 0.416687 3_1:+48987682 None:intergenic
AGTAGCTTGGGTGGTGATTG+TGG 0.416830 3_1:+48987815 None:intergenic
GTAGGTTTGAAGCCAACATA+TGG 0.418336 3_1:-48985547 Msa0360200:CDS
AACTGCAGCTGCCGATCCTC+CGG 0.421581 3_1:+48985648 None:intergenic
GTTCAGTGTTACCAAATAGA+AGG 0.422874 3_1:-48980157 Msa0360200:three_prime_UTR
AGTTGGGTGGGATTGTTGTT+GGG 0.424283 3_1:-48987434 Msa0360200:CDS
CCAATCATTTGCAGGCCAAC+AGG 0.424765 3_1:+48982827 None:intergenic
GGCTGAAGCAGGTATGTTTA+GGG 0.424828 3_1:-48980181 Msa0360200:three_prime_UTR
GTGCCTGAGCGAGGAGGGAT+TGG 0.432715 3_1:+48987628 None:intergenic
GAATCCCGAGCCAAAGGGTT+AGG 0.438985 3_1:-48984578 Msa0360200:CDS
GATCCTCCGGATGATCCTCC+TGG 0.440465 3_1:+48985661 None:intergenic
CTAGCTCATCAGCATAAACT+TGG 0.445051 3_1:+48984615 None:intergenic
GGGGTGTGTGAGAGTAGCTT+GGG 0.445406 3_1:+48987803 None:intergenic
CGGAGAGGGTGTTGGTGCGA+AGG 0.447100 3_1:+48987733 None:intergenic
TTCACCGCCGTCGCATCAAA+TGG 0.448776 3_1:+48987468 None:intergenic
TCAACGCCATCAGCTATGAT+TGG 0.451573 3_1:+48980276 None:intergenic
TGGTGCGAAGGGAGTGGCGA+AGG 0.453034 3_1:+48987745 None:intergenic
GTGGAGGAAGGAACGGAGGT+GGG 0.455031 3_1:+48987662 None:intergenic
GTCGGTGGCGGAGAGGGTGT+TGG 0.455253 3_1:+48987725 None:intergenic
GTTCATCTGTCGCTGATGCT+GGG 0.461237 3_1:-48985462 Msa0360200:CDS
TCAGACGGAGGCGGGTGAGG+TGG 0.463017 3_1:+48987691 None:intergenic
GGGACATATGCCCTTTCAGC+TGG 0.466577 3_1:-48984380 Msa0360200:CDS
GAAAATGCGGTGGCTGAAGC+AGG 0.466998 3_1:-48980192 Msa0360200:three_prime_UTR
TAGGTAAATGTCAACCTAGC+TGG 0.467203 3_1:-48982905 Msa0360200:CDS
AGAACCTAACCCTTTGGCTC+GGG 0.470303 3_1:+48984574 None:intergenic
AAGGGTGAGGATTTGAGAGG+GGG 0.471284 3_1:+48987764 None:intergenic
ACACTTGATCAATCTATAGC+TGG 0.472209 3_1:+48979920 None:intergenic
TACCTCAGAACCTAACCCTT+TGG 0.473794 3_1:+48984568 None:intergenic
GGGTTCGGTCAGACGGAGGC+GGG 0.475235 3_1:+48987683 None:intergenic
GTATCGTTGGGAAGTGATAC+TGG 0.476953 3_1:-48985607 Msa0360200:CDS
TGAAACTGATAAATTGTGTA+TGG 0.480278 3_1:+48980216 None:intergenic
TCCAACTTGTCTCGCTATGA+TGG 0.480589 3_1:-48984792 Msa0360200:CDS
GTGAAGAGAGTTAAGGAGTT+GGG 0.481622 3_1:-48987450 Msa0360200:CDS
CGGCAGCTGCAGTTTCTGCC+AGG 0.482964 3_1:-48985639 Msa0360200:CDS
GATGAGCTAGACTCTCTCTA+TGG 0.484664 3_1:-48984602 Msa0360200:CDS
GGAACGTGGGGTTTGGAGTG+TGG 0.485069 3_1:+48987866 None:intergenic
CGACCAATCCCTCCTCGCTC+AGG 0.485149 3_1:-48987631 Msa0360200:CDS
TGCTGGCAACCCAAGTGAAA+AGG 0.489336 3_1:+48984845 None:intergenic
GAATATGGATGAGTTTGGTA+TGG 0.494732 3_1:-48987406 Msa0360200:CDS
ATTGAAGATGGTGTTGATGC+TGG 0.494844 3_1:-48985069 Msa0360200:CDS
TGCCGTCGACTGGTGGGTCG+AGG 0.495461 3_1:-48987512 Msa0360200:CDS
CAGACGGAGGCGGGTGAGGT+GGG 0.495572 3_1:+48987692 None:intergenic
TGGTGATTGTGGATGATGGA+AGG 0.497543 3_1:+48987826 None:intergenic
CAACGATACAACACATTGCC+TGG 0.499311 3_1:+48985621 None:intergenic
GGAGAGGGTGTTGGTGCGAA+GGG 0.500125 3_1:+48987734 None:intergenic
TGGGATGTTAATAGGGTGCC+AGG 0.501326 3_1:-48985679 Msa0360200:CDS
TAAGCAGCTGAAGGAGCTGC+AGG 0.503173 3_1:+48983859 None:intergenic
GGAGGTGGGGTTCGGTCAGA+CGG 0.506358 3_1:+48987676 None:intergenic
AGGGTGCCAGGAGGATCATC+CGG 0.508700 3_1:-48985667 Msa0360200:CDS
CATTATAAGGAATAGCTTCA+AGG 0.510073 3_1:-48983914 Msa0360200:CDS
CCTAGCTGGACTACCTGCCT+TGG 0.511239 3_1:-48982891 Msa0360200:CDS
GGGTGTTGGTGCGAAGGGAG+TGG 0.514103 3_1:+48987739 None:intergenic
GGTGGGGTTCGGTCAGACGG+AGG 0.514187 3_1:+48987679 None:intergenic
GAAGGGTGAGGATTTGAGAG+GGG 0.518189 3_1:+48987763 None:intergenic
ATCATAGTAACCAGCTGAAA+GGG 0.518202 3_1:+48984370 None:intergenic
GCGAGGAGGGATTGGTCGGA+AGG 0.518314 3_1:+48987636 None:intergenic
ATTCGTGAAACTATTGAAGA+TGG 0.519456 3_1:-48985081 Msa0360200:CDS
GAATAGCTTCAAGGAAGCGC+TGG 0.521105 3_1:-48983905 Msa0360200:CDS
TTGGAAAGTAAGCCCTTGAA+AGG 0.521290 3_1:-48985120 Msa0360200:CDS
GTGTGTGAGAGTAGCTTGGG+TGG 0.521382 3_1:+48987806 None:intergenic
AATGAGGTCGGTGGCGGAGA+GGG 0.521708 3_1:+48987719 None:intergenic
TGGGTGGTGATTGTGGATGA+TGG 0.522453 3_1:+48987822 None:intergenic
CTCGACCGTAGAATCGCTGC+GGG 0.522696 3_1:-48987600 Msa0360200:CDS
CCAATTCTCAGTCCTTTCAA+GGG 0.528903 3_1:+48985108 None:intergenic
AGGAGGATCATCCGGAGGAT+CGG 0.529125 3_1:-48985659 Msa0360200:CDS
ATATTACAAACGAGCGCAGC+AGG 0.530821 3_1:-48984345 Msa0360200:intron
CTTGAGACGCGCCCATATGT+TGG 0.532165 3_1:+48985535 None:intergenic
CGTCTCAAGATTTGGACTCA+TGG 0.533310 3_1:-48985521 Msa0360200:CDS
GGGAAATCAAGATATCATAT+TGG 0.533729 3_1:+48983881 None:intergenic
GTCATGTGCCTGAGCGAGGA+GGG 0.533744 3_1:+48987623 None:intergenic
GCTGATATGCCGTCGACTGG+TGG 0.534187 3_1:-48987519 Msa0360200:CDS
GGATCGACTGGCCTTCCTGT+TGG 0.537162 3_1:-48982842 Msa0360200:CDS
AAGGGAGAAGCGTGAGAGAG+TGG 0.537183 3_1:+48987845 None:intergenic
ACCATCATAGCGAGACAAGT+TGG 0.538119 3_1:+48984791 None:intergenic
CATCATAGTAACCAGCTGAA+AGG 0.540452 3_1:+48984369 None:intergenic
GGATTGAATGAGGTCGGTGG+CGG 0.541744 3_1:+48987713 None:intergenic
TATCATGACCAGCAATTGCA+TGG 0.543365 3_1:+48985431 None:intergenic
AAGAGAGTTAAGGAGTTGGG+TGG 0.544145 3_1:-48987447 Msa0360200:CDS
TAGGTTTGAAGCCAACATAT+GGG 0.545372 3_1:-48985546 Msa0360200:CDS
TAAGCGATCGATCTACATCT+TGG 0.545396 3_1:-48980243 Msa0360200:three_prime_UTR
CAGAACCTAACCCTTTGGCT+CGG 0.546221 3_1:+48984573 None:intergenic
TGGTGGAAGTGTGAGGCAGC+CGG 0.546383 3_1:-48985587 Msa0360200:CDS
GGAAGTGGAGGAAGGAACGG+AGG 0.547418 3_1:+48987658 None:intergenic
GGCCTTGTAATTTACTGTTG+AGG 0.549310 3_1:-48979859 Msa0360200:intron
GATCCTTTGGCTATGTATGC+TGG 0.549623 3_1:-48983730 Msa0360200:CDS
AGTTGAAAGAAGATATACTA+GGG 0.549706 3_1:+48987942 None:intergenic
AATATGGATGAGTTTGGTAT+GGG 0.549939 3_1:-48987405 Msa0360200:CDS
GGCACCCTATTAACATCCCA+CGG 0.550526 3_1:+48985682 None:intergenic
AAGGGAAGTGGAGGAAGGAA+CGG 0.550801 3_1:+48987655 None:intergenic
AGAGAGTTAAGGAGTTGGGT+GGG 0.551590 3_1:-48987446 Msa0360200:CDS
TCACACTCACTCTAGAGTCT+AGG 0.552794 3_1:-48987910 Msa0360200:five_prime_UTR
TGATGCCACATCAAGTAAGC+AGG 0.552918 3_1:-48985404 Msa0360200:intron
CAGGCAATGTGTTGTATCGT+TGG 0.553276 3_1:-48985620 Msa0360200:CDS
CGAGGAGGGATTGGTCGGAA+GGG 0.553349 3_1:+48987637 None:intergenic
GAAGGGAGTGGCGAAGGGTG+AGG 0.555290 3_1:+48987751 None:intergenic
CCACATGGTAAAACCAAGGC+AGG 0.555507 3_1:+48982878 None:intergenic
ATTGGTCGGAAGGGAAGTGG+AGG 0.558009 3_1:+48987646 None:intergenic
TATGGTGAATCCCGAGCCAA+AGG 0.561140 3_1:-48984584 Msa0360200:CDS
GCGAAGGGTGAGGATTTGAG+AGG 0.562088 3_1:+48987761 None:intergenic
CCGCAGCGATTCTACGGTCG+AGG 0.563454 3_1:+48987601 None:intergenic
GATTGGTGCAGCATTTAATG+AGG 0.564316 3_1:-48982810 Msa0360200:intron
TTTATTGAGAATGGATCGAC+TGG 0.565848 3_1:-48982854 Msa0360200:CDS
ACGCCATCAGCTATGATTGG+TGG 0.566635 3_1:+48980279 None:intergenic
CCAAGGCAGGTAGTCCAGCT+AGG 0.568026 3_1:+48982891 None:intergenic
CTGATATGCCGTCGACTGGT+GGG 0.569688 3_1:-48987518 Msa0360200:CDS
GAGGTGGGATTGAATGAGGT+CGG 0.569920 3_1:+48987707 None:intergenic
TATAGATTGATCAAGTGTAA+AGG 0.571333 3_1:-48979915 Msa0360200:three_prime_UTR
GTTCCACCAATCATAGCTGA+TGG 0.572843 3_1:-48980282 Msa0360200:CDS
AAATATGAACAATCCATAGC+CGG 0.574261 3_1:+48979775 None:intergenic
TAGTTGAAAGAAGATATACT+AGG 0.574306 3_1:+48987941 None:intergenic
AGCCAAAGGGTTAGGTTCTG+AGG 0.574572 3_1:-48984570 Msa0360200:intron
TGGTGGGTCGAGGATACTTG+AGG 0.574780 3_1:-48987502 Msa0360200:CDS
TCGGCCTCCATTTGATGCGA+CGG 0.576869 3_1:-48987475 Msa0360200:CDS
TCATACCTGCTTACTTGATG+TGG 0.577058 3_1:+48985399 None:intergenic
GTCGGAAGGGAAGTGGAGGA+AGG 0.578060 3_1:+48987650 None:intergenic
GACGGCGGTGAAGAGAGTTA+AGG 0.579689 3_1:-48987457 Msa0360200:CDS
TAGGGAGAGCTGCTGAGAGT+GGG 0.580834 3_1:-48980342 Msa0360200:CDS
CGAGGTCATGTGCCTGAGCG+AGG 0.581516 3_1:+48987619 None:intergenic
GTAAAGGAGCAACTGCTCAT+CGG 0.585240 3_1:-48979899 Msa0360200:intron
AGGCAATGTGTTGTATCGTT+GGG 0.585368 3_1:-48985619 Msa0360200:CDS
AGCAGCTGAAGGAGCTGCAG+GGG 0.585773 3_1:+48983861 None:intergenic
CTGAAATGCAGAAGCTTCAG+TGG 0.585857 3_1:+48987377 None:intergenic
GGTGCGAAGGGAGTGGCGAA+GGG 0.585986 3_1:+48987746 None:intergenic
ACAACACCGCAAAATGATGC+CGG 0.586556 3_1:+48985568 None:intergenic
CGAAGGGTGAGGATTTGAGA+GGG 0.587213 3_1:+48987762 None:intergenic
TGTTAAGGATAATATATGTA+CGG 0.587925 3_1:-48987541 Msa0360200:CDS
GGTGATTGTGGATGATGGAA+GGG 0.588647 3_1:+48987827 None:intergenic
AGCGTGAGAGAGTGGAACGT+GGG 0.590701 3_1:+48987853 None:intergenic
GGTGAAGAGAGTTAAGGAGT+TGG 0.591063 3_1:-48987451 Msa0360200:CDS
GTAGGGAGAGCTGCTGAGAG+TGG 0.592088 3_1:-48980343 Msa0360200:intron
GGGTGAGGTGGGATTGAATG+AGG 0.593659 3_1:+48987703 None:intergenic
GCGTCATCACTTGATGCCAT+TGG 0.595721 3_1:-48985493 Msa0360200:CDS
GGTGGGTCGAGGATACTTGA+GGG 0.597676 3_1:-48987501 Msa0360200:CDS
AATAGGTGACTGCCAACCCG+TGG 0.597933 3_1:-48985699 Msa0360200:intron
CCTATTAACATCCCACGGGT+TGG 0.601481 3_1:+48985687 None:intergenic
ACGGCTGATATGCCGTCGAC+TGG 0.602236 3_1:-48987522 Msa0360200:CDS
TTATCAGTTTCATGAAAATG+CGG 0.606283 3_1:-48980205 Msa0360200:three_prime_UTR
ATCCTCGACCCACCAGTCGA+CGG 0.609093 3_1:+48987510 None:intergenic
TCATTTGCAGGCCAACAGGA+AGG 0.610270 3_1:+48982831 None:intergenic
GCAACAAGAACACCAGCAAG+AGG 0.610406 3_1:+48987564 None:intergenic
AAAGCGAGGACATAGTATGC+TGG 0.610724 3_1:+48984828 None:intergenic
CTGAGCGAGGAGGGATTGGT+CGG 0.613946 3_1:+48987632 None:intergenic
AGATGAACCAAAGCAGCCAA+TGG 0.614909 3_1:+48985477 None:intergenic
CGACCGTAGAATCGCTGCGG+GGG 0.617202 3_1:-48987598 Msa0360200:CDS
AAGCAGCTGAAGGAGCTGCA+GGG 0.619430 3_1:+48983860 None:intergenic
GCACCCTATTAACATCCCAC+GGG 0.621175 3_1:+48985683 None:intergenic
ATGGTGAATCCCGAGCCAAA+GGG 0.624972 3_1:-48984583 Msa0360200:CDS
GCCTCCATTTGATGCGACGG+CGG 0.628308 3_1:-48987472 Msa0360200:CDS
TGGAGGAAGGAACGGAGGTG+GGG 0.629220 3_1:+48987663 None:intergenic
AAGCGTGAGAGAGTGGAACG+TGG 0.633684 3_1:+48987852 None:intergenic
GTGGGATTGAATGAGGTCGG+TGG 0.637339 3_1:+48987710 None:intergenic
ATATGGATGAGTTTGGTATG+GGG 0.639425 3_1:-48987404 Msa0360200:CDS
GGCAACCCAAGTGAAAAGGA+TGG 0.642277 3_1:+48984849 None:intergenic
ACCGCCGTCGCATCAAATGG+AGG 0.645246 3_1:+48987471 None:intergenic
TCAGTTTCATGAAAATGCGG+TGG 0.646417 3_1:-48980202 Msa0360200:three_prime_UTR
ATTAGGATGCTCTGTGAACG+AGG 0.648039 3_1:-48985004 Msa0360200:intron
CCATTCTCAATAAATCCACA+TGG 0.649598 3_1:+48982863 None:intergenic
TCACCAGCATACATAGCCAA+AGG 0.651194 3_1:+48983727 None:intergenic
GAATGAGGTCGGTGGCGGAG+AGG 0.652364 3_1:+48987718 None:intergenic
GGTCATGTGCCTGAGCGAGG+AGG 0.653457 3_1:+48987622 None:intergenic
ATAGGTGACTGCCAACCCGT+GGG 0.663939 3_1:-48985698 Msa0360200:intron
AAGATGATTCAGACAAAGCG+AGG 0.664996 3_1:+48984814 None:intergenic
AAATCCACATGGTAAAACCA+AGG 0.672604 3_1:+48982874 None:intergenic
CTGATGGCGTTGAATAACGA+GGG 0.678961 3_1:-48980266 Msa0360200:exon
GCGTGAGAGAGTGGAACGTG+GGG 0.681489 3_1:+48987854 None:intergenic
GCTGATGGCGTTGAATAACG+AGG 0.685403 3_1:-48980267 Msa0360200:exon
CCTCGACCGTAGAATCGCTG+CGG 0.687794 3_1:-48987601 Msa0360200:CDS
GTGATACTGGTGGAAGTGTG+AGG 0.689164 3_1:-48985594 Msa0360200:CDS
AGGGTGAGGATTTGAGAGGG+GGG 0.698726 3_1:+48987765 None:intergenic
GTGCCAGGAGGATCATCCGG+AGG 0.699333 3_1:-48985664 Msa0360200:CDS
CATGACCAGCAATTGCATGG+AGG 0.725633 3_1:+48985434 None:intergenic
TCGACCGTAGAATCGCTGCG+GGG 0.729315 3_1:-48987599 Msa0360200:CDS
GATGTTAATAGGGTGCCAGG+AGG 0.756629 3_1:-48985676 Msa0360200:CDS
TCGTTGGGAAGTGATACTGG+TGG 0.795744 3_1:-48985604 Msa0360200:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAATTAGGTATT+AGG - chr3_1:48979779-48979798 Msa0360200:three_prime_UTR 10.0%
!!! TCACTTTAAAATTTAAATTA+TGG + chr3_1:48980491-48980510 None:intergenic 10.0%
!!! AAGTTAGTTTTTTTTTTTTT+TGG - chr3_1:48980552-48980571 Msa0360200:intron 10.0%
!! AATAAATACAACATAAATAT+TGG - chr3_1:48984597-48984616 Msa0360200:CDS 10.0%
!! ATATACAAAAAAATATTCTA+GGG + chr3_1:48985457-48985476 None:intergenic 10.0%
!! TTTGCAATTTCAATAAATTT+AGG - chr3_1:48980785-48980804 Msa0360200:intron 15.0%
!! TTGCAATTTCAATAAATTTA+GGG - chr3_1:48980786-48980805 Msa0360200:intron 15.0%
!! GAATTGAAATAAAATTAACT+AGG + chr3_1:48980838-48980857 None:intergenic 15.0%
!! TTTCAAATATTTATAATGTC+AGG - chr3_1:48981126-48981145 Msa0360200:intron 15.0%
!! TTCAAATATTTATAATGTCA+GGG - chr3_1:48981127-48981146 Msa0360200:intron 15.0%
!! AGCAAAAAAATAATATGAAA+TGG + chr3_1:48981207-48981226 None:intergenic 15.0%
!!! TTGGTTTTTTTTTTTTTATC+CGG - chr3_1:48981248-48981267 Msa0360200:intron 15.0%
!! TTTAAGCTGAATTAAAATTT+AGG - chr3_1:48981341-48981360 Msa0360200:intron 15.0%
!! ATTGTTAAAAGGTAATTAAT+TGG + chr3_1:48982551-48982570 None:intergenic 15.0%
!!! TTCTATTTTTAATACATTTC+AGG - chr3_1:48983336-48983355 Msa0360200:intron 15.0%
!!! ACTTTATTTTATGTTTTTCT+TGG - chr3_1:48983445-48983464 Msa0360200:intron 15.0%
!!! TTTCATTTATTTTAGAAGTT+TGG - chr3_1:48983777-48983796 Msa0360200:intron 15.0%
!!! TTCATTTATTTTAGAAGTTT+GGG - chr3_1:48983778-48983797 Msa0360200:intron 15.0%
!! TGATTAATTAAGATATTTCT+TGG + chr3_1:48984364-48984383 None:intergenic 15.0%
!! CATATACAAAAAAATATTCT+AGG + chr3_1:48985458-48985477 None:intergenic 15.0%
!!! AGTTGATATACAATAAATAA+GGG + chr3_1:48985777-48985796 None:intergenic 15.0%
!!! TAGTTGATATACAATAAATA+AGG + chr3_1:48985778-48985797 None:intergenic 15.0%
!!! ATTAATTACACTAATTTTCA+AGG + chr3_1:48985873-48985892 None:intergenic 15.0%
!!! TTTAGTAAGTAAAAAACTTT+TGG - chr3_1:48987928-48987947 Msa0360200:five_prime_UTR 15.0%
!!! AAAAATATTTGAAATTCTAC+CGG - chr3_1:48987965-48987984 Msa0360200:five_prime_UTR 15.0%
!! TGTTAAGGATAATATATGTA+CGG - chr3_1:48980218-48980237 Msa0360200:three_prime_UTR 20.0%
!!! ATGGTTCAAATTTTCAAATA+AGG + chr3_1:48980472-48980491 None:intergenic 20.0%
!! TTAAAGTGAATATTAATCTC+AGG - chr3_1:48980502-48980521 Msa0360200:intron 20.0%
!!! CTAATTTGACAGTAATTTTA+AGG + chr3_1:48980751-48980770 None:intergenic 20.0%
!! CTTAAAATTACTGTCAAATT+AGG - chr3_1:48980749-48980768 Msa0360200:intron 20.0%
!! ATGGTAAGTTGTTAAAATAT+AGG - chr3_1:48981037-48981056 Msa0360200:intron 20.0%
!! TGGTAAGTTGTTAAAATATA+GGG - chr3_1:48981038-48981057 Msa0360200:intron 20.0%
!! ATTTGAAAGTTTAATAGAGT+CGG - chr3_1:48981097-48981116 Msa0360200:intron 20.0%
!! TCTAAAAGTTCAAAAAACAA+GGG + chr3_1:48981377-48981396 None:intergenic 20.0%
!! ATCTAAAAGTTCAAAAAACA+AGG + chr3_1:48981378-48981397 None:intergenic 20.0%
!! TCTCTATGTCTTAAATATAA+TGG + chr3_1:48981794-48981813 None:intergenic 20.0%
!! ATTACAAAACATACAAAAAG+TGG - chr3_1:48981906-48981925 Msa0360200:intron 20.0%
!! TTACAAAACATACAAAAAGT+GGG - chr3_1:48981907-48981926 Msa0360200:intron 20.0%
!! AACATATCTCAGTTATAAAT+GGG + chr3_1:48982014-48982033 None:intergenic 20.0%
!! AAACATATCTCAGTTATAAA+TGG + chr3_1:48982015-48982034 None:intergenic 20.0%
!!! CTTTTTTTCATTATTAGCAA+TGG - chr3_1:48982420-48982439 Msa0360200:intron 20.0%
!!! AATTAATTGGCTTAATAACA+AGG + chr3_1:48982538-48982557 None:intergenic 20.0%
!! TCAAAATGAGATAGAAAATT+GGG + chr3_1:48982606-48982625 None:intergenic 20.0%
!! ACAAAATAAAACATTGTGTT+CGG + chr3_1:48983055-48983074 None:intergenic 20.0%
!!! TCATTGATAATCATTTTGTT+TGG - chr3_1:48983086-48983105 Msa0360200:intron 20.0%
!!! AGTCAAATTTGAAATTAAGA+AGG + chr3_1:48983230-48983249 None:intergenic 20.0%
!! AATACCAATGCATATAAAAT+TGG + chr3_1:48983305-48983324 None:intergenic 20.0%
!!! TTATTTTATGTTTTTCTTGG+TGG - chr3_1:48983448-48983467 Msa0360200:intron 20.0%
!!! TATTTTATGTTTTTCTTGGT+GGG - chr3_1:48983449-48983468 Msa0360200:intron 20.0%
!! AAGTATTTCATTCTTCTTAT+TGG - chr3_1:48984067-48984086 Msa0360200:intron 20.0%
!! TTAACAACATATAATGAGAT+CGG + chr3_1:48984121-48984140 None:intergenic 20.0%
!!! TGAATCAAGTTTAATTTCAA+TGG + chr3_1:48984238-48984257 None:intergenic 20.0%
!! ATTGTATAGGATTATTGTTT+AGG + chr3_1:48984665-48984684 None:intergenic 20.0%
!!! TAATGTTTGCTTTTCTTTAT+TGG - chr3_1:48984816-48984835 Msa0360200:CDS 20.0%
!!! TTTTTAAAGAGCATTAAAGA+GGG - chr3_1:48985061-48985080 Msa0360200:CDS 20.0%
!!! ATCTTTAAGAAAATATTCTC+AGG + chr3_1:48985219-48985238 None:intergenic 20.0%
!! TTAAAGAGCAAATAATCTTT+AGG + chr3_1:48985557-48985576 None:intergenic 20.0%
!! ATTTGAAGATGATTAAACAA+AGG - chr3_1:48985576-48985595 Msa0360200:CDS 20.0%
!! AAATGAGATAGTTGTATAAA+AGG - chr3_1:48985661-48985680 Msa0360200:CDS 20.0%
!!! CATTTGATAACTTTTAATCT+TGG + chr3_1:48987194-48987213 None:intergenic 20.0%
!! CAAGATTAAAAGTTATCAAA+TGG - chr3_1:48987192-48987211 Msa0360200:intron 20.0%
!! TGTTGTAACCTAAAATAATT+TGG - chr3_1:48987301-48987320 Msa0360200:intron 20.0%
!!! TATAGATGCCAAATTATTTT+AGG + chr3_1:48987312-48987331 None:intergenic 20.0%
!! AATTGTGATCATTTCAAAAA+AGG + chr3_1:48987771-48987790 None:intergenic 20.0%
!!! TTTTTGAAATGATCACAATT+TGG - chr3_1:48987771-48987790 Msa0360200:CDS 20.0%
! AGTTGAAAGAAGATATACTA+GGG + chr3_1:48979820-48979839 None:intergenic 25.0%
! TAGTTGAAAGAAGATATACT+AGG + chr3_1:48979821-48979840 None:intergenic 25.0%
! ACTAATAAAAAATGCACTTG+TGG + chr3_1:48980655-48980674 None:intergenic 25.0%
! TTTAAGGACTAAATTAACCA+AGG + chr3_1:48980735-48980754 None:intergenic 25.0%
! AAATGTAGGGAATAAATTGA+TGG - chr3_1:48981018-48981037 Msa0360200:intron 25.0%
! ATAGCAAGTGGTTAAATAAA+GGG - chr3_1:48981070-48981089 Msa0360200:intron 25.0%
! ATTCTTAGATACATTAGTGT+GGG - chr3_1:48981435-48981454 Msa0360200:intron 25.0%
! TTACTACTAACATTACAAAC+TGG + chr3_1:48981593-48981612 None:intergenic 25.0%
! TTGAATTAAATTTGTGAGCA+TGG - chr3_1:48981677-48981696 Msa0360200:intron 25.0%
! TGAATTAAATTTGTGAGCAT+GGG - chr3_1:48981678-48981697 Msa0360200:intron 25.0%
! GAAGAATGAAAATTGCAAAT+CGG - chr3_1:48981729-48981748 Msa0360200:intron 25.0%
! TACAAAACATACAAAAAGTG+GGG - chr3_1:48981908-48981927 Msa0360200:intron 25.0%
! GATGCATATGTTAATTCAAT+AGG - chr3_1:48982043-48982062 Msa0360200:intron 25.0%
!! AACAACATTTTTACCAAACA+TGG + chr3_1:48982394-48982413 None:intergenic 25.0%
! GTTAGCTATTCATTGTTAAA+AGG + chr3_1:48982562-48982581 None:intergenic 25.0%
! AGCTAACAATGTAATTTATC+AGG - chr3_1:48982575-48982594 Msa0360200:intron 25.0%
! TAACAATGTAATTTATCAGG+AGG - chr3_1:48982578-48982597 Msa0360200:intron 25.0%
! GTCAAAATGAGATAGAAAAT+TGG + chr3_1:48982607-48982626 None:intergenic 25.0%
! AGTTATAGAGAAAAATGAAG+TGG + chr3_1:48982785-48982804 None:intergenic 25.0%
!!! ATAATCATTTTGTTTGGCTT+GGG - chr3_1:48983092-48983111 Msa0360200:intron 25.0%
! TGAAATTAAGAAGGATTGAA+AGG + chr3_1:48983221-48983240 None:intergenic 25.0%
!! TTGGATCAATTCTTTTATAC+AGG + chr3_1:48983286-48983305 None:intergenic 25.0%
!! TGATCCAATTTTATATGCAT+TGG - chr3_1:48983298-48983317 Msa0360200:intron 25.0%
!!! GTGAAAATGAGAATTTTGAT+GGG - chr3_1:48983358-48983377 Msa0360200:intron 25.0%
!!! TGAAAATGAGAATTTTGATG+GGG - chr3_1:48983359-48983378 Msa0360200:intron 25.0%
! TGACTGAATTCATTATCATT+GGG + chr3_1:48983502-48983521 None:intergenic 25.0%
! TGAAAAGAAAAATGATCCTT+TGG - chr3_1:48984016-48984035 Msa0360200:intron 25.0%
! GATTGAATATATACCATCTA+AGG + chr3_1:48984333-48984352 None:intergenic 25.0%
! CTTAATTAATCAATAACTGC+CGG - chr3_1:48984372-48984391 Msa0360200:CDS 25.0%
! TTAATTAATCAATAACTGCC+GGG - chr3_1:48984373-48984392 Msa0360200:CDS 25.0%
! TATATACTTGACACATGTTA+AGG + chr3_1:48984417-48984436 None:intergenic 25.0%
! TGTTGAATTAGAGAAAATAG+AGG - chr3_1:48984514-48984533 Msa0360200:intron 25.0%
!!! TTGGTGGTTTTTCTTTTTAT+AGG - chr3_1:48984835-48984854 Msa0360200:CDS 25.0%
!! CTCTTTAATGCTCTTTAAAA+AGG + chr3_1:48985062-48985081 None:intergenic 25.0%
!!! CTTTTTAAAGAGCATTAAAG+AGG - chr3_1:48985060-48985079 Msa0360200:CDS 25.0%
! AATTCATGTGTGATATTCTA+GGG + chr3_1:48985148-48985167 None:intergenic 25.0%
! AAATTCATGTGTGATATTCT+AGG + chr3_1:48985149-48985168 None:intergenic 25.0%
!! CACAATTTTTAAACTCTCTT+TGG + chr3_1:48985176-48985195 None:intergenic 25.0%
! GAGAGTTTAAAAATTGTGTT+TGG - chr3_1:48985178-48985197 Msa0360200:intron 25.0%
!!! ACATATTGGTTTATAAACGT+GGG - chr3_1:48985287-48985306 Msa0360200:intron 25.0%
! TTTAGTTGAAAAAAGTTACC+AGG - chr3_1:48985420-48985439 Msa0360200:CDS 25.0%
! GAATTATTTATTCCCATCTT+TGG + chr3_1:48985485-48985504 None:intergenic 25.0%
!!! AAATTCTTTAGAACGTAACA+TGG + chr3_1:48985621-48985640 None:intergenic 25.0%
! TATACAACTATCTCATTTGA+TGG + chr3_1:48985659-48985678 None:intergenic 25.0%
! TAAACAACAAACAATATGAG+AGG - chr3_1:48985920-48985939 Msa0360200:intron 25.0%
! AAACAACAAACAATATGAGA+GGG - chr3_1:48985921-48985940 Msa0360200:intron 25.0%
! CTCAATGAGATGTAAAATTT+AGG + chr3_1:48986032-48986051 None:intergenic 25.0%
! AAAGATTCTATCACAAAAGT+TGG + chr3_1:48986070-48986089 None:intergenic 25.0%
! TTTGTGATAGAATCTTTCTA+TGG - chr3_1:48986073-48986092 Msa0360200:intron 25.0%
! ATTCTCATGTATAAAGATGA+GGG + chr3_1:48986232-48986251 None:intergenic 25.0%
! AATTCTCATGTATAAAGATG+AGG + chr3_1:48986233-48986252 None:intergenic 25.0%
! TTGTACTAACAGTTACTAAT+AGG - chr3_1:48986300-48986319 Msa0360200:intron 25.0%
! TTCTTATAATACGAGATATC+AGG + chr3_1:48986495-48986514 None:intergenic 25.0%
! ACAAATAAGAGGAATTAAGA+GGG + chr3_1:48986595-48986614 None:intergenic 25.0%
! TACAAATAAGAGGAATTAAG+AGG + chr3_1:48986596-48986615 None:intergenic 25.0%
!! TCTTAATTCCTCTTATTTGT+AGG - chr3_1:48986595-48986614 Msa0360200:intron 25.0%
! TGAGATAATTGGAAGAAATA+TGG + chr3_1:48986629-48986648 None:intergenic 25.0%
! GGAATTTCAATCAAAATGTT+AGG + chr3_1:48986694-48986713 None:intergenic 25.0%
! AAAGATTAGACACATTCAAA+AGG - chr3_1:48986773-48986792 Msa0360200:intron 25.0%
! AAAAGGAAAATAGTAAAGAG+AGG - chr3_1:48986790-48986809 Msa0360200:intron 25.0%
!!! TAGCTCGGTTTATTTTTTTT+TGG - chr3_1:48986883-48986902 Msa0360200:intron 25.0%
!!! AGCTCGGTTTATTTTTTTTT+GGG - chr3_1:48986884-48986903 Msa0360200:intron 25.0%
!!! TTTTTTTTGGGTTAAAAGAG+AGG - chr3_1:48986896-48986915 Msa0360200:intron 25.0%
! AACATGAAAGTTTAGCAAAT+AGG + chr3_1:48987103-48987122 None:intergenic 25.0%
! TATCTAATATACGTCTTTCT+TGG - chr3_1:48987259-48987278 Msa0360200:intron 25.0%
! ATCTAATATACGTCTTTCTT+GGG - chr3_1:48987260-48987279 Msa0360200:intron 25.0%
! TGAAACTGATAAATTGTGTA+TGG + chr3_1:48987546-48987565 None:intergenic 25.0%
! TTATCAGTTTCATGAAAATG+CGG - chr3_1:48987554-48987573 Msa0360200:CDS 25.0%
! TACCAAATAGAAGGAAAATT+TGG - chr3_1:48987611-48987630 Msa0360200:CDS 25.0%
!! AACCAAATTTTCCTTCTATT+TGG + chr3_1:48987616-48987635 None:intergenic 25.0%
! TATAGATTGATCAAGTGTAA+AGG - chr3_1:48987844-48987863 Msa0360200:CDS 25.0%
AATATGGATGAGTTTGGTAT+GGG - chr3_1:48980354-48980373 Msa0360200:intron 30.0%
!! AGTATAACTTGCTGTCATAT+TGG - chr3_1:48980599-48980618 Msa0360200:intron 30.0%
!! TAGTCCTCAAATCTGTTTTT+AGG - chr3_1:48980680-48980699 Msa0360200:intron 30.0%
ACAACCTAAAAACAGATTTG+AGG + chr3_1:48980687-48980706 None:intergenic 30.0%
! TCTTTGAATGTGTTTTTCCT+TGG - chr3_1:48980715-48980734 Msa0360200:intron 30.0%
TTACATCTTCTGAGTATGTT+AGG - chr3_1:48980972-48980991 Msa0360200:intron 30.0%
TACATCTTCTGAGTATGTTA+GGG - chr3_1:48980973-48980992 Msa0360200:intron 30.0%
ATAGTAAGCGGTTAAATGTA+GGG - chr3_1:48981005-48981024 Msa0360200:intron 30.0%
!! TTAACCACTTGCTATCAATT+AGG + chr3_1:48981065-48981084 None:intergenic 30.0%
GATAGCAAGTGGTTAAATAA+AGG - chr3_1:48981069-48981088 Msa0360200:intron 30.0%
ACAAACAAACAAACAACTAC+CGG + chr3_1:48981270-48981289 None:intergenic 30.0%
!!! TGTGTTTTTGTTTTCCAGTT+TGG - chr3_1:48981311-48981330 Msa0360200:intron 30.0%
!!! GTGTTTTTGTTTTCCAGTTT+GGG - chr3_1:48981312-48981331 Msa0360200:intron 30.0%
GATTCTTAGATACATTAGTG+TGG - chr3_1:48981434-48981453 Msa0360200:intron 30.0%
TTCTTAGATACATTAGTGTG+GGG - chr3_1:48981436-48981455 Msa0360200:intron 30.0%
! ATGATGTTTGATGATCCATT+TGG - chr3_1:48981478-48981497 Msa0360200:intron 30.0%
TGTTAGTAGTAAATGTGAGA+AGG - chr3_1:48981601-48981620 Msa0360200:intron 30.0%
! TTTTCTCTCCAAATAAATGC+TGG + chr3_1:48981706-48981725 None:intergenic 30.0%
! ATATCCTACAGTTGCTTTAT+GGG - chr3_1:48981752-48981771 Msa0360200:intron 30.0%
TAACTGAGATATGTTTACTC+AGG - chr3_1:48982019-48982038 Msa0360200:intron 30.0%
! TATGAGTTTTTCACCATGTT+TGG - chr3_1:48982378-48982397 Msa0360200:intron 30.0%
GGCTCTTTGTTAAATATGAA+GGG - chr3_1:48982473-48982492 Msa0360200:intron 30.0%
!! TTTTGACTATGCAAGTTCTT+TGG - chr3_1:48982620-48982639 Msa0360200:intron 30.0%
ATTCGTGAAACTATTGAAGA+TGG - chr3_1:48982678-48982697 Msa0360200:intron 30.0%
TATAGAGAAAAATGAAGTGG+AGG + chr3_1:48982782-48982801 None:intergenic 30.0%
! AGTTAATGGACAGATGAAAA+GGG + chr3_1:48982876-48982895 None:intergenic 30.0%
! AAGTTAATGGACAGATGAAA+AGG + chr3_1:48982877-48982896 None:intergenic 30.0%
!! GATAATCATTTTGTTTGGCT+TGG - chr3_1:48983091-48983110 Msa0360200:intron 30.0%
ATATCTAGATATAGAGAAGG+TGG + chr3_1:48983119-48983138 None:intergenic 30.0%
ACCTTCTCTATATCTAGATA+TGG - chr3_1:48983118-48983137 Msa0360200:intron 30.0%
TCCATATCTAGATATAGAGA+AGG + chr3_1:48983122-48983141 None:intergenic 30.0%
! GGTGAAAATGAGAATTTTGA+TGG - chr3_1:48983357-48983376 Msa0360200:intron 30.0%
GTGACTGAATTCATTATCAT+TGG + chr3_1:48983503-48983522 None:intergenic 30.0%
! ATGATAATGAATTCAGTCAC+AGG - chr3_1:48983503-48983522 Msa0360200:intron 30.0%
TACATAGAACACGCATAAAA+GGG + chr3_1:48983813-48983832 None:intergenic 30.0%
TTACATAGAACACGCATAAA+AGG + chr3_1:48983814-48983833 None:intergenic 30.0%
CTTGAAGCTATTCCTTATAA+TGG + chr3_1:48983847-48983866 None:intergenic 30.0%
CATTATAAGGAATAGCTTCA+AGG - chr3_1:48983845-48983864 Msa0360200:intron 30.0%
GGGAAATCAAGATATCATAT+TGG + chr3_1:48983881-48983900 None:intergenic 30.0%
CTAACATGCAATAATGCAAA+AGG + chr3_1:48983954-48983973 None:intergenic 30.0%
AAGAGAACGATTACAATTAC+AGG + chr3_1:48983979-48983998 None:intergenic 30.0%
! AGACAAATAGTGTTAGTTTG+AGG - chr3_1:48984184-48984203 Msa0360200:intron 30.0%
! AATAGTGTTAGTTTGAGGTT+TGG - chr3_1:48984189-48984208 Msa0360200:intron 30.0%
! CAGCAGAGTCAATTTTATAT+AGG - chr3_1:48984566-48984585 Msa0360200:intron 30.0%
CACGTCTCTATTTATTGTAT+AGG + chr3_1:48984678-48984697 None:intergenic 30.0%
AGAAAAGCAAACATTATGCT+CGG + chr3_1:48984812-48984831 None:intergenic 30.0%
!! TGTTTGCTTTTCTTTATTGG+TGG - chr3_1:48984819-48984838 Msa0360200:CDS 30.0%
! TATTCTAGGGAATCAATTCT+GGG + chr3_1:48985135-48985154 None:intergenic 30.0%
! ATATTCTAGGGAATCAATTC+TGG + chr3_1:48985136-48985155 None:intergenic 30.0%
!! AATTGTGTTTGGTTGATGAT+TGG - chr3_1:48985189-48985208 Msa0360200:intron 30.0%
! TCGTCTAGTTTACATGATAA+GGG + chr3_1:48985262-48985281 None:intergenic 30.0%
!! CACATATTGGTTTATAAACG+TGG - chr3_1:48985286-48985305 Msa0360200:intron 30.0%
!! AATGGCCTTTTAAGAAACAA+AGG - chr3_1:48985337-48985356 Msa0360200:intron 30.0%
! GACTTCCTTTGTTTCTTAAA+AGG + chr3_1:48985345-48985364 None:intergenic 30.0%
TCTAGGGAATAAATTATTCC+TGG + chr3_1:48985441-48985460 None:intergenic 30.0%
TTGTATATGTCTACCAAAGA+TGG - chr3_1:48985469-48985488 Msa0360200:CDS 30.0%
TGTATATGTCTACCAAAGAT+GGG - chr3_1:48985470-48985489 Msa0360200:CDS 30.0%
AAGAGCAAATAATCTTTAGG+AGG + chr3_1:48985554-48985573 None:intergenic 30.0%
ACAGTTAATAGGAGACAAAT+GGG + chr3_1:48985690-48985709 None:intergenic 30.0%
TTCCAAACAAGACAGTTAAT+AGG + chr3_1:48985701-48985720 None:intergenic 30.0%
TCGAATGACTAATGATTATG+GGG + chr3_1:48985801-48985820 None:intergenic 30.0%
GTCGAATGACTAATGATTAT+GGG + chr3_1:48985802-48985821 None:intergenic 30.0%
TGTCGAATGACTAATGATTA+TGG + chr3_1:48985803-48985822 None:intergenic 30.0%
TTCTATCTCCTTTCTTTCTT+GGG - chr3_1:48985984-48986003 Msa0360200:intron 30.0%
! ATTTTACATCTCATTGAGCA+TGG - chr3_1:48986034-48986053 Msa0360200:intron 30.0%
TTCTCATGTATAAAGATGAG+GGG + chr3_1:48986231-48986250 None:intergenic 30.0%
TTATAATACGAGATATCAGG+TGG + chr3_1:48986492-48986511 None:intergenic 30.0%
GTTAGTTGGATTGAGATAAT+TGG + chr3_1:48986640-48986659 None:intergenic 30.0%
GTAACCTCTTAAGTTCATAA+AGG - chr3_1:48986947-48986966 Msa0360200:intron 30.0%
CTTTCCTTTATGAACTTAAG+AGG + chr3_1:48986954-48986973 None:intergenic 30.0%
TGAACAATAGAATCATCCTT+TGG - chr3_1:48987379-48987398 Msa0360200:CDS 30.0%
ACAAATAAATTCCAAGCCAA+AGG + chr3_1:48987398-48987417 None:intergenic 30.0%
!! TTGGCTTGGAATTTATTTGT+AGG - chr3_1:48987398-48987417 Msa0360200:CDS 30.0%
! TGGCTTGGAATTTATTTGTA+GGG - chr3_1:48987399-48987418 Msa0360200:CDS 30.0%
GAAAATTTGGTTGACATTAC+AGG - chr3_1:48987624-48987643 Msa0360200:CDS 30.0%
! GACATTACAGGCAAATATTT+TGG - chr3_1:48987636-48987655 Msa0360200:CDS 30.0%
TCGGAACTTAACAAATAAGT+TGG - chr3_1:48987879-48987898 Msa0360200:CDS 30.0%
ATCCTCAACAGTAAATTACA+AGG + chr3_1:48987905-48987924 None:intergenic 30.0%
AAATATGAACAATCCATAGC+CGG + chr3_1:48987987-48988006 None:intergenic 30.0%
AAGACGAATATGGATGAGTT+TGG - chr3_1:48980348-48980367 Msa0360200:intron 35.0%
GAATATGGATGAGTTTGGTA+TGG - chr3_1:48980353-48980372 Msa0360200:intron 35.0%
ATATGGATGAGTTTGGTATG+GGG - chr3_1:48980355-48980374 Msa0360200:intron 35.0%
!! TTTTTGGCACACCACAATTT+AGG - chr3_1:48980568-48980587 Msa0360200:intron 35.0%
ACTTTCAAGGACCTAAATTG+TGG + chr3_1:48980582-48980601 None:intergenic 35.0%
GACAGCAAGTTATACTTTCA+AGG + chr3_1:48980595-48980614 None:intergenic 35.0%
TTACTGTCAAATTAGGTGCT+AGG - chr3_1:48980756-48980775 Msa0360200:intron 35.0%
TACTGTCAAATTAGGTGCTA+GGG - chr3_1:48980757-48980776 Msa0360200:intron 35.0%
! GGGACTAAATTGATAGTAAG+CGG - chr3_1:48980993-48981012 Msa0360200:intron 35.0%
GATAGTAAGCGGTTAAATGT+AGG - chr3_1:48981004-48981023 Msa0360200:intron 35.0%
! GTTGTAGTGCATTTCTGTTT+TGG - chr3_1:48981229-48981248 Msa0360200:intron 35.0%
!!! TTTTTGTTTTCCAGTTTGGG+TGG - chr3_1:48981315-48981334 Msa0360200:intron 35.0%
AAAGAATAGTGTCGTATGCT+AGG - chr3_1:48981531-48981550 Msa0360200:intron 35.0%
! CTGGACATTTGAAATTTGAG+AGG + chr3_1:48981574-48981593 None:intergenic 35.0%
TAAATGTGAGAAGGTTTGAG+TGG - chr3_1:48981610-48981629 Msa0360200:intron 35.0%
! GATATCCTACAGTTGCTTTA+TGG - chr3_1:48981751-48981770 Msa0360200:intron 35.0%
! TATCCTACAGTTGCTTTATG+GGG - chr3_1:48981753-48981772 Msa0360200:intron 35.0%
! TAGGTTTGAAGCCAACATAT+GGG - chr3_1:48982213-48982232 Msa0360200:intron 35.0%
GACAATGTTTGGTATAGTCT+CGG - chr3_1:48982451-48982470 Msa0360200:intron 35.0%
ACAATGTTTGGTATAGTCTC+GGG - chr3_1:48982452-48982471 Msa0360200:intron 35.0%
GGGCTCTTTGTTAAATATGA+AGG - chr3_1:48982472-48982491 Msa0360200:intron 35.0%
TCATCTGTCCATTAACTTAC+AGG - chr3_1:48982879-48982898 Msa0360200:CDS 35.0%
!! TATGCATTGGTATTTTGAGC+TGG - chr3_1:48983311-48983330 Msa0360200:intron 35.0%
ATCATAGTAACCAGCTGAAA+GGG + chr3_1:48983392-48983411 None:intergenic 35.0%
CTAAAAGACACGTAAAGAAC+AGG + chr3_1:48983704-48983723 None:intergenic 35.0%
AAACTCTTGCTTCATTTCCT+AGG - chr3_1:48983733-48983752 Msa0360200:CDS 35.0%
TTATGCGTGTTCTATGTAAC+AGG - chr3_1:48983815-48983834 Msa0360200:intron 35.0%
AACAGGTGAGAACCATTATA+AGG - chr3_1:48983832-48983851 Msa0360200:intron 35.0%
! CCAATTTTATAAGCAGCTGA+AGG + chr3_1:48983912-48983931 None:intergenic 35.0%
CCTTCAGCTGCTTATAAAAT+TGG - chr3_1:48983909-48983928 Msa0360200:CDS 35.0%
TCTCTTTCTTTGACATTTGC+AGG - chr3_1:48983993-48984012 Msa0360200:intron 35.0%
! GACTTCTAGTTACTCCATAA+AGG - chr3_1:48984452-48984471 Msa0360200:intron 35.0%
ATCAAACTCTCTAAACCACT+GGG + chr3_1:48984737-48984756 None:intergenic 35.0%
AAATCCACATGGTAAAACCA+AGG + chr3_1:48984888-48984907 None:intergenic 35.0%
CCATTCTCAATAAATCCACA+TGG + chr3_1:48984899-48984918 None:intergenic 35.0%
CCATGTGGATTTATTGAGAA+TGG - chr3_1:48984896-48984915 Msa0360200:intron 35.0%
TTTATTGAGAATGGATCGAC+TGG - chr3_1:48984905-48984924 Msa0360200:intron 35.0%
TACACTAAACTTCGTGTTGA+CGG - chr3_1:48984992-48985011 Msa0360200:intron 35.0%
! CTCGTCTAGTTTACATGATA+AGG + chr3_1:48985263-48985282 None:intergenic 35.0%
CTTATCATGTAAACTAGACG+AGG - chr3_1:48985261-48985280 Msa0360200:intron 35.0%
! GTTACTTAGGAGGGTATAAA+TGG - chr3_1:48985319-48985338 Msa0360200:intron 35.0%
! ATTTTCATTCCCAGCACAAA+AGG + chr3_1:48985393-48985412 None:intergenic 35.0%
! TTTTGTGCTGGGAATGAAAA+TGG - chr3_1:48985392-48985411 Msa0360200:intron 35.0%
TTTGTGCTGGGAATGAAAAT+GGG - chr3_1:48985393-48985412 Msa0360200:intron 35.0%
CTGCTACAAATTAAGTTCCT+GGG + chr3_1:48985520-48985539 None:intergenic 35.0%
ACTGCTACAAATTAAGTTCC+TGG + chr3_1:48985521-48985540 None:intergenic 35.0%
TCATTTGATGGAGGAAGAAA+AGG + chr3_1:48985647-48985666 None:intergenic 35.0%
ACAACTATCTCATTTGATGG+AGG + chr3_1:48985656-48985675 None:intergenic 35.0%
CAGTTAATAGGAGACAAATG+GGG + chr3_1:48985689-48985708 None:intergenic 35.0%
GACAGTTAATAGGAGACAAA+TGG + chr3_1:48985691-48985710 None:intergenic 35.0%
! CTCCTATTAACTGTCTTGTT+TGG - chr3_1:48985696-48985715 Msa0360200:CDS 35.0%
AATGTAATGCACGTGTCTTA+AGG + chr3_1:48985901-48985920 None:intergenic 35.0%
GAGGGATGAAGTACAAATTT+CGG - chr3_1:48985939-48985958 Msa0360200:intron 35.0%
AAAGGAGATAGAACCAACAT+CGG + chr3_1:48985977-48985996 None:intergenic 35.0%
GTTCTATCTCCTTTCTTTCT+TGG - chr3_1:48985983-48986002 Msa0360200:intron 35.0%
TCTATCTCCTTTCTTTCTTG+GGG - chr3_1:48985985-48986004 Msa0360200:intron 35.0%
! TCTGCAACTCCTGTAATTTT+GGG + chr3_1:48986131-48986150 None:intergenic 35.0%
! TTCTGCAACTCCTGTAATTT+TGG + chr3_1:48986132-48986151 None:intergenic 35.0%
TTGTGATTGAGTGAAGGATT+GGG + chr3_1:48986191-48986210 None:intergenic 35.0%
AATTGTTAAAGAGTCCCATC+AGG - chr3_1:48986380-48986399 Msa0360200:intron 35.0%
CAACATCTTTCTGTAACTGA+GGG + chr3_1:48986531-48986550 None:intergenic 35.0%
TTACAGAAAGATGTTGCAGA+TGG - chr3_1:48986535-48986554 Msa0360200:intron 35.0%
AAGTATCTAGTCCTTTGGTT+GGG + chr3_1:48986570-48986589 None:intergenic 35.0%
! CATTTTCGCCTACAAATAAG+AGG + chr3_1:48986606-48986625 None:intergenic 35.0%
CAACTAACTCTTACTCTTAC+CGG - chr3_1:48986652-48986671 Msa0360200:intron 35.0%
TTTGCTTACAAACTGTAGCT+CGG - chr3_1:48986868-48986887 Msa0360200:intron 35.0%
ATGAACTTAAGAGGTTACCA+GGG + chr3_1:48986945-48986964 None:intergenic 35.0%
TATGAACTTAAGAGGTTACC+AGG + chr3_1:48986946-48986965 None:intergenic 35.0%
AAAACGTACTGAACTACATG+TGG - chr3_1:48987058-48987077 Msa0360200:intron 35.0%
! ATAGGACAGAAAAGTACACT+TGG + chr3_1:48987085-48987104 None:intergenic 35.0%
ATGGTCAAAGATAACTAACC+TGG - chr3_1:48987211-48987230 Msa0360200:intron 35.0%
GTCTTTCTTGGGTAAAAGTT+TGG - chr3_1:48987271-48987290 Msa0360200:intron 35.0%
AATAGAATCATCCTTTGGCT+TGG - chr3_1:48987384-48987403 Msa0360200:CDS 35.0%
GTTCAGTGTTACCAAATAGA+AGG - chr3_1:48987602-48987621 Msa0360200:CDS 35.0%
ACACTTGATCAATCTATAGC+TGG + chr3_1:48987842-48987861 None:intergenic 35.0%
! ATTTGAAATTCTACCGGCTA+TGG - chr3_1:48987971-48987990 Msa0360200:five_prime_UTR 35.0%
! TGGTGTTCTTGTTGCTGTTA+AGG - chr3_1:48980203-48980222 Msa0360200:three_prime_UTR 40.0%
GTGAAGAGAGTTAAGGAGTT+GGG - chr3_1:48980309-48980328 Msa0360200:CDS 40.0%
TGTTGTTGGGAAGACGAATA+TGG - chr3_1:48980338-48980357 Msa0360200:CDS 40.0%
TACAAAGTCAGAGTCTGGTT+TGG + chr3_1:48980876-48980895 None:intergenic 40.0%
AAACCAGACTCTGACTTTGT+AGG - chr3_1:48980875-48980894 Msa0360200:intron 40.0%
AACCAGACTCTGACTTTGTA+GGG - chr3_1:48980876-48980895 Msa0360200:intron 40.0%
GTTTGAGTGGTGACATTATG+TGG - chr3_1:48981623-48981642 Msa0360200:intron 40.0%
CATGGGTTCCAGCATTTATT+TGG - chr3_1:48981695-48981714 Msa0360200:intron 40.0%
ATTGTTGACGAATGACCTGA+TGG - chr3_1:48981844-48981863 Msa0360200:intron 40.0%
CATCACATTATGCATCCATC+AGG + chr3_1:48981862-48981881 None:intergenic 40.0%
AGGCAATGTGTTGTATCGTT+GGG - chr3_1:48982140-48982159 Msa0360200:intron 40.0%
! GTAGGTTTGAAGCCAACATA+TGG - chr3_1:48982212-48982231 Msa0360200:intron 40.0%
TATCATGACCAGCAATTGCA+TGG + chr3_1:48982331-48982350 None:intergenic 40.0%
TCATACCTGCTTACTTGATG+TGG + chr3_1:48982363-48982382 None:intergenic 40.0%
TGGTCATTGACGACAATGTT+TGG - chr3_1:48982440-48982459 Msa0360200:intron 40.0%
TTGGAAAGTAAGCCCTTGAA+AGG - chr3_1:48982639-48982658 Msa0360200:intron 40.0%
CCAATTCTCAGTCCTTTCAA+GGG + chr3_1:48982654-48982673 None:intergenic 40.0%
ACCAATTCTCAGTCCTTTCA+AGG + chr3_1:48982655-48982674 None:intergenic 40.0%
!! ATTGAAGATGGTGTTGATGC+TGG - chr3_1:48982690-48982709 Msa0360200:intron 40.0%
!! TGATGCTGCTTCACATTTTG+AGG - chr3_1:48982731-48982750 Msa0360200:intron 40.0%
!!! GCTTCACATTTTGAGGCATT+AGG - chr3_1:48982738-48982757 Msa0360200:intron 40.0%
CAGTGACACCTGTAAGTTAA+TGG + chr3_1:48982890-48982909 None:intergenic 40.0%
AAGATGATTCAGACAAAGCG+AGG + chr3_1:48982948-48982967 None:intergenic 40.0%
TGTCTCGCTATGATGGTATT+AGG - chr3_1:48982974-48982993 Msa0360200:intron 40.0%
CTATGATGGTATTAGGTCAG+TGG - chr3_1:48982981-48983000 Msa0360200:intron 40.0%
TGTGTTCGGTTGTGTGTATT+TGG + chr3_1:48983041-48983060 None:intergenic 40.0%
CTAGCTCATCAGCATAAACT+TGG + chr3_1:48983147-48983166 None:intergenic 40.0%
CATCATAGTAACCAGCTGAA+AGG + chr3_1:48983393-48983412 None:intergenic 40.0%
ATGCAAAAGGAAAGCTACAC+AGG + chr3_1:48983941-48983960 None:intergenic 40.0%
TACTACAATATGCAACGACC+CGG + chr3_1:48984394-48984413 None:intergenic 40.0%
ATAACTAGTTATGCACCCAG+TGG - chr3_1:48984719-48984738 Msa0360200:intron 40.0%
GATCAAACTCTCTAAACCAC+TGG + chr3_1:48984738-48984757 None:intergenic 40.0%
TAGGTAAATGTCAACCTAGC+TGG - chr3_1:48984854-48984873 Msa0360200:CDS 40.0%
GATTGGTGCAGCATTTAATG+AGG - chr3_1:48984949-48984968 Msa0360200:intron 40.0%
! ACACTAAACTTCGTGTTGAC+GGG - chr3_1:48984993-48985012 Msa0360200:intron 40.0%
!! AAGAGCATTAAAGAGGGAGA+TGG - chr3_1:48985067-48985086 Msa0360200:CDS 40.0%
AGGGAGATGGTTAAAACCTA+AGG - chr3_1:48985080-48985099 Msa0360200:CDS 40.0%
GGGAGATGGTTAAAACCTAA+GGG - chr3_1:48985081-48985100 Msa0360200:CDS 40.0%
ACTAGACGAGGTACACATAT+TGG - chr3_1:48985273-48985292 Msa0360200:intron 40.0%
TTCCTTGCAGTTACTTAGGA+GGG - chr3_1:48985310-48985329 Msa0360200:intron 40.0%
AAACAAAGGAAGTCAACTGC+TGG - chr3_1:48985351-48985370 Msa0360200:intron 40.0%
AACAAAGGAAGTCAACTGCT+GGG - chr3_1:48985352-48985371 Msa0360200:intron 40.0%
TTGTGCTGGGAATGAAAATG+GGG - chr3_1:48985394-48985413 Msa0360200:intron 40.0%
AATTCCCATGTTAGATTCCC+AGG - chr3_1:48985500-48985519 Msa0360200:CDS 40.0%
AGTTCCTGGGAATCTAACAT+GGG + chr3_1:48985507-48985526 None:intergenic 40.0%
AAGTTCCTGGGAATCTAACA+TGG + chr3_1:48985508-48985527 None:intergenic 40.0%
GGATGAAGTACAAATTTCGG+TGG - chr3_1:48985942-48985961 Msa0360200:intron 40.0%
AACCATTCCCCAAGAAAGAA+AGG + chr3_1:48985995-48986014 None:intergenic 40.0%
!! AACTCCTGTAATTTTGGGGA+GGG + chr3_1:48986126-48986145 None:intergenic 40.0%
! CTGCAACTCCTGTAATTTTG+GGG + chr3_1:48986130-48986149 None:intergenic 40.0%
TGTGATTGAGTGAAGGATTG+GGG + chr3_1:48986190-48986209 None:intergenic 40.0%
CTTGTGATTGAGTGAAGGAT+TGG + chr3_1:48986192-48986211 None:intergenic 40.0%
GGTATCTTGTGATTGAGTGA+AGG + chr3_1:48986197-48986216 None:intergenic 40.0%
TATAAAGATGAGGGGTGAGA+GGG + chr3_1:48986223-48986242 None:intergenic 40.0%
GTAACTGTTAGTACAAGAGC+AGG + chr3_1:48986296-48986315 None:intergenic 40.0%
ACAAGGAGAATAGTTGTGAG+GGG + chr3_1:48986340-48986359 None:intergenic 40.0%
GACAAGGAGAATAGTTGTGA+GGG + chr3_1:48986341-48986360 None:intergenic 40.0%
AACTATTCTCCTTGTCCTCA+AGG - chr3_1:48986345-48986364 Msa0360200:intron 40.0%
ATTACAAGATGTCCACCTTG+AGG + chr3_1:48986363-48986382 None:intergenic 40.0%
ATAACAGGAACATCAGACAG+TGG + chr3_1:48986409-48986428 None:intergenic 40.0%
GCAACATCTTTCTGTAACTG+AGG + chr3_1:48986532-48986551 None:intergenic 40.0%
! GAAGTATCTAGTCCTTTGGT+TGG + chr3_1:48986571-48986590 None:intergenic 40.0%
CGGTAAGAGTAAGAGTTAGT+TGG + chr3_1:48986654-48986673 None:intergenic 40.0%
! AGGTGTTTGTTAGTAAGTGC+CGG + chr3_1:48986674-48986693 None:intergenic 40.0%
TGTGAGTTGTATCACAGATG+AGG + chr3_1:48986715-48986734 None:intergenic 40.0%
!!! ATTTTTTATTGCTGTCCCCC+TGG - chr3_1:48986925-48986944 Msa0360200:intron 40.0%
TGAACTTAAGAGGTTACCAG+GGG + chr3_1:48986944-48986963 None:intergenic 40.0%
CTCACGTACTATTACACTGT+CGG - chr3_1:48987151-48987170 Msa0360200:intron 40.0%
CCAAAAAGAGTAGTAAGACC+AGG + chr3_1:48987232-48987251 None:intergenic 40.0%
!!! CCTGGTCTTACTACTCTTTT+TGG - chr3_1:48987229-48987248 Msa0360200:intron 40.0%
TAAGCGATCGATCTACATCT+TGG - chr3_1:48987516-48987535 Msa0360200:CDS 40.0%
TCAGTTTCATGAAAATGCGG+TGG - chr3_1:48987557-48987576 Msa0360200:CDS 40.0%
TGGTCACACATGATTGAATC+TGG - chr3_1:48987656-48987675 Msa0360200:CDS 40.0%
! GGCCTTGTAATTTACTGTTG+AGG - chr3_1:48987900-48987919 Msa0360200:exon 40.0%
!! TCACACTCACTCTAGAGTCT+AGG - chr3_1:48979849-48979868 Msa0360200:three_prime_UTR 45.0%
!! GGTGATTGTGGATGATGGAA+GGG + chr3_1:48979935-48979954 None:intergenic 45.0%
!! TGGTGATTGTGGATGATGGA+AGG + chr3_1:48979936-48979955 None:intergenic 45.0%
CGAGGATACTTGAGGGTTAT+CGG - chr3_1:48980265-48980284 Msa0360200:exon 45.0%
GGTGAAGAGAGTTAAGGAGT+TGG - chr3_1:48980308-48980327 Msa0360200:CDS 45.0%
AAGAGAGTTAAGGAGTTGGG+TGG - chr3_1:48980312-48980331 Msa0360200:CDS 45.0%
AGAGAGTTAAGGAGTTGGGT+GGG - chr3_1:48980313-48980332 Msa0360200:CDS 45.0%
! AGTTGGGTGGGATTGTTGTT+GGG - chr3_1:48980325-48980344 Msa0360200:CDS 45.0%
CTGAAATGCAGAAGCTTCAG+TGG + chr3_1:48980385-48980404 None:intergenic 45.0%
CACTGAAGCTTCTGCATTTC+AGG - chr3_1:48980383-48980402 Msa0360200:intron 45.0%
!! AAAGTCAGAGTCTGGTTTGG+TGG + chr3_1:48980873-48980892 None:intergenic 45.0%
! TTTGTAGGGCGTTCTCAGAT+AGG - chr3_1:48980890-48980909 Msa0360200:intron 45.0%
! GGGACCTAATTGATAGCAAG+TGG - chr3_1:48981058-48981077 Msa0360200:intron 45.0%
TTCGTATGGCGCTCTCAAAT+AGG + chr3_1:48981154-48981173 None:intergenic 45.0%
AACTAGTCCCAGACTTCGTA+TGG + chr3_1:48981168-48981187 None:intergenic 45.0%
!! TACGAAGTCTGGGACTAGTT+TGG - chr3_1:48981168-48981187 Msa0360200:intron 45.0%
GCTTAAATGTCCACCCAAAC+TGG + chr3_1:48981328-48981347 None:intergenic 45.0%
! CATTAGTGTGGGGTTAGTGT+TGG - chr3_1:48981446-48981465 Msa0360200:intron 45.0%
CATGACTGACATCAGCCAAA+TGG + chr3_1:48981496-48981515 None:intergenic 45.0%
CTGATGTCAGTCATGTTGAG+CGG - chr3_1:48981501-48981520 Msa0360200:intron 45.0%
TACAAAAAGTGGGGTTGTGC+TGG - chr3_1:48981917-48981936 Msa0360200:intron 45.0%
CAACCCGTGGGATGTTAATA+GGG - chr3_1:48982073-48982092 Msa0360200:intron 45.0%
CAACGATACAACACATTGCC+TGG + chr3_1:48982141-48982160 None:intergenic 45.0%
CAGGCAATGTGTTGTATCGT+TGG - chr3_1:48982139-48982158 Msa0360200:intron 45.0%
GTATCGTTGGGAAGTGATAC+TGG - chr3_1:48982152-48982171 Msa0360200:intron 45.0%
ACAACACCGCAAAATGATGC+CGG + chr3_1:48982194-48982213 None:intergenic 45.0%
!!! GCATCATTTTGCGGTGTTGT+AGG - chr3_1:48982194-48982213 Msa0360200:intron 45.0%
CGTCTCAAGATTTGGACTCA+TGG - chr3_1:48982238-48982257 Msa0360200:intron 45.0%
AGATGAACCAAAGCAGCCAA+TGG + chr3_1:48982285-48982304 None:intergenic 45.0%
ATTCTCCTCCATGCAATTGC+TGG - chr3_1:48982320-48982339 Msa0360200:intron 45.0%
TGATGCCACATCAAGTAAGC+AGG - chr3_1:48982355-48982374 Msa0360200:intron 45.0%
CCCTTGAAAGGACTGAGAAT+TGG - chr3_1:48982651-48982670 Msa0360200:intron 45.0%
ATTAGGATGCTCTGTGAACG+AGG - chr3_1:48982755-48982774 Msa0360200:intron 45.0%
! TCACTGCCATCCTTTTCACT+TGG - chr3_1:48982904-48982923 Msa0360200:CDS 45.0%
! CACTGCCATCCTTTTCACTT+GGG - chr3_1:48982905-48982924 Msa0360200:CDS 45.0%
AAAGCGAGGACATAGTATGC+TGG + chr3_1:48982934-48982953 None:intergenic 45.0%
TCCAACTTGTCTCGCTATGA+TGG - chr3_1:48982967-48982986 Msa0360200:intron 45.0%
ACCATCATAGCGAGACAAGT+TGG + chr3_1:48982971-48982990 None:intergenic 45.0%
GATGAGCTAGACTCTCTCTA+TGG - chr3_1:48983157-48983176 Msa0360200:intron 45.0%
TACCTCAGAACCTAACCCTT+TGG + chr3_1:48983194-48983213 None:intergenic 45.0%
ATATTACAAACGAGCGCAGC+AGG - chr3_1:48983414-48983433 Msa0360200:intron 45.0%
TTGGGTTAAGAAGAACCGAG+AGG + chr3_1:48983484-48983503 None:intergenic 45.0%
AGACACGTAAAGAACAGGAG+TGG + chr3_1:48983699-48983718 None:intergenic 45.0%
GAACGCTGATAAGACAACCT+AGG + chr3_1:48983753-48983772 None:intergenic 45.0%
GATCCTTTGGCTATGTATGC+TGG - chr3_1:48984029-48984048 Msa0360200:intron 45.0%
TCACCAGCATACATAGCCAA+AGG + chr3_1:48984035-48984054 None:intergenic 45.0%
!! CTGCTGGTTTATGCCTTAGA+TGG - chr3_1:48984317-48984336 Msa0360200:intron 45.0%
TTCGCTGGGATACTCCTTTA+TGG + chr3_1:48984469-48984488 None:intergenic 45.0%
AACTGATGCCTTCATTCGCT+GGG + chr3_1:48984483-48984502 None:intergenic 45.0%
TAACTGATGCCTTCATTCGC+TGG + chr3_1:48984484-48984503 None:intergenic 45.0%
ATGCTGCACCAATCATTTGC+AGG + chr3_1:48984943-48984962 None:intergenic 45.0%
! CACTAAACTTCGTGTTGACG+GGG - chr3_1:48984994-48985013 Msa0360200:intron 45.0%
!! AACCTAAGGGAGCGTTTGAT+TGG - chr3_1:48985094-48985113 Msa0360200:CDS 45.0%
!! ACCTAAGGGAGCGTTTGATT+GGG - chr3_1:48985095-48985114 Msa0360200:CDS 45.0%
TGGGTTCCTTGCAGTTACTT+AGG - chr3_1:48985306-48985325 Msa0360200:intron 45.0%
GTTCCTTGCAGTTACTTAGG+AGG - chr3_1:48985309-48985328 Msa0360200:intron 45.0%
TACCCTCCTAAGTAACTGCA+AGG + chr3_1:48985315-48985334 None:intergenic 45.0%
! ATCATTCCCACCTTTTGTGC+TGG - chr3_1:48985380-48985399 Msa0360200:intron 45.0%
! TCATTCCCACCTTTTGTGCT+GGG - chr3_1:48985381-48985400 Msa0360200:intron 45.0%
TCATTCCCAGCACAAAAGGT+GGG + chr3_1:48985389-48985408 None:intergenic 45.0%
TTCATTCCCAGCACAAAAGG+TGG + chr3_1:48985390-48985409 None:intergenic 45.0%
CTCCTTTCTTTCTTGGGGAA+TGG - chr3_1:48985990-48986009 Msa0360200:intron 45.0%
TTTCTTGGGGAATGGTTCGA+AGG - chr3_1:48985998-48986017 Msa0360200:intron 45.0%
!! ACTCCTGTAATTTTGGGGAG+GGG + chr3_1:48986125-48986144 None:intergenic 45.0%
!! CAACTCCTGTAATTTTGGGG+AGG + chr3_1:48986127-48986146 None:intergenic 45.0%
GTATAAAGATGAGGGGTGAG+AGG + chr3_1:48986224-48986243 None:intergenic 45.0%
! AAGAGCAGGTTAGTTCAGCT+GGG + chr3_1:48986282-48986301 None:intergenic 45.0%
GGACAAGGAGAATAGTTGTG+AGG + chr3_1:48986342-48986361 None:intergenic 45.0%
TATTCTCCTTGTCCTCAAGG+TGG - chr3_1:48986348-48986367 Msa0360200:intron 45.0%
TCAGACAGTGGAATCCTGAT+GGG + chr3_1:48986397-48986416 None:intergenic 45.0%
ATCAGACAGTGGAATCCTGA+TGG + chr3_1:48986398-48986417 None:intergenic 45.0%
CACACACAAGGGTTCATAAC+AGG + chr3_1:48986424-48986443 None:intergenic 45.0%
AGTGACTCGATCACACACAA+GGG + chr3_1:48986435-48986454 None:intergenic 45.0%
TGGTATAAGAGCTCCGATCT+TGG + chr3_1:48986461-48986480 None:intergenic 45.0%
GATATCAGGTGGTTATCGAC+TGG + chr3_1:48986481-48986500 None:intergenic 45.0%
TATCTAGTCCTTTGGTTGGG+AGG + chr3_1:48986567-48986586 None:intergenic 45.0%
!! GGGAGAAGTATCTAGTCCTT+TGG + chr3_1:48986575-48986594 None:intergenic 45.0%
GAACTTAAGAGGTTACCAGG+GGG + chr3_1:48986943-48986962 None:intergenic 45.0%
! GCTGCATTTTGCCCTAGATT+GGG - chr3_1:48987014-48987033 Msa0360200:intron 45.0%
! CATTTTGCCCTAGATTGGGT+TGG - chr3_1:48987018-48987037 Msa0360200:intron 45.0%
AATGCAGCCAACCCAATCTA+GGG + chr3_1:48987028-48987047 None:intergenic 45.0%
AAATGCAGCCAACCCAATCT+AGG + chr3_1:48987029-48987048 None:intergenic 45.0%
CGTACTATTACACTGTCGGT+AGG - chr3_1:48987155-48987174 Msa0360200:intron 45.0%
GTTCCACCAATCATAGCTGA+TGG - chr3_1:48987477-48987496 Msa0360200:CDS 45.0%
TCAACGCCATCAGCTATGAT+TGG + chr3_1:48987486-48987505 None:intergenic 45.0%
! CTGATGGCGTTGAATAACGA+GGG - chr3_1:48987493-48987512 Msa0360200:CDS 45.0%
TGGCTGAAGCAGGTATGTTT+AGG - chr3_1:48987577-48987596 Msa0360200:CDS 45.0%
GGCTGAAGCAGGTATGTTTA+GGG - chr3_1:48987578-48987597 Msa0360200:CDS 45.0%
GTAAAGGAGCAACTGCTCAT+CGG - chr3_1:48987860-48987879 Msa0360200:CDS 45.0%
TGGGTGGTGATTGTGGATGA+TGG + chr3_1:48979940-48979959 None:intergenic 50.0%
AGTAGCTTGGGTGGTGATTG+TGG + chr3_1:48979947-48979966 None:intergenic 50.0%
AAGGGTGAGGATTTGAGAGG+GGG + chr3_1:48979998-48980017 None:intergenic 50.0%
GAAGGGTGAGGATTTGAGAG+GGG + chr3_1:48979999-48980018 None:intergenic 50.0%
CGAAGGGTGAGGATTTGAGA+GGG + chr3_1:48980000-48980019 None:intergenic 50.0%
GAGGTGGGATTGAATGAGGT+CGG + chr3_1:48980055-48980074 None:intergenic 50.0%
AAGGGAAGTGGAGGAAGGAA+CGG + chr3_1:48980107-48980126 None:intergenic 50.0%
GCAACAAGAACACCAGCAAG+AGG + chr3_1:48980198-48980217 None:intergenic 50.0%
GAGTTGGGTGGGATTGTTGT+TGG - chr3_1:48980324-48980343 Msa0360200:CDS 50.0%
!! GAAGTCTGGGACTAGTTTGG+TGG - chr3_1:48981171-48981190 Msa0360200:intron 50.0%
CTGCCCCATAAAGCAACTGT+AGG + chr3_1:48981759-48981778 None:intergenic 50.0%
!!! TGCTGGTTTTTCTCCGTCTG+TGG - chr3_1:48981934-48981953 Msa0360200:intron 50.0%
!!! GCTGGTTTTTCTCCGTCTGT+GGG - chr3_1:48981935-48981954 Msa0360200:intron 50.0%
! GTTTTTCTCCGTCTGTGGGT+GGG - chr3_1:48981939-48981958 Msa0360200:intron 50.0%
CCTATTAACATCCCACGGGT+TGG + chr3_1:48982075-48982094 None:intergenic 50.0%
CCAACCCGTGGGATGTTAAT+AGG - chr3_1:48982072-48982091 Msa0360200:intron 50.0%
GCACCCTATTAACATCCCAC+GGG + chr3_1:48982079-48982098 None:intergenic 50.0%
GGCACCCTATTAACATCCCA+CGG + chr3_1:48982080-48982099 None:intergenic 50.0%
! TGGGATGTTAATAGGGTGCC+AGG - chr3_1:48982080-48982099 Msa0360200:intron 50.0%
! GATGTTAATAGGGTGCCAGG+AGG - chr3_1:48982083-48982102 Msa0360200:intron 50.0%
TCGTTGGGAAGTGATACTGG+TGG - chr3_1:48982155-48982174 Msa0360200:intron 50.0%
! GTGATACTGGTGGAAGTGTG+AGG - chr3_1:48982165-48982184 Msa0360200:intron 50.0%
TATGGGCGCGTCTCAAGATT+TGG - chr3_1:48982230-48982249 Msa0360200:intron 50.0%
GCGTCATCACTTGATGCCAT+TGG - chr3_1:48982266-48982285 Msa0360200:intron 50.0%
! CTTGATGCCATTGGCTGCTT+TGG - chr3_1:48982275-48982294 Msa0360200:intron 50.0%
GTTCATCTGTCGCTGATGCT+GGG - chr3_1:48982297-48982316 Msa0360200:intron 50.0%
CATGACCAGCAATTGCATGG+AGG + chr3_1:48982328-48982347 None:intergenic 50.0%
GGCAACCCAAGTGAAAAGGA+TGG + chr3_1:48982913-48982932 None:intergenic 50.0%
TGCTGGCAACCCAAGTGAAA+AGG + chr3_1:48982917-48982936 None:intergenic 50.0%
TTTGGACGAAGAGAGCGAGA+GGG + chr3_1:48983023-48983042 None:intergenic 50.0%
ATTTGGACGAAGAGAGCGAG+AGG + chr3_1:48983024-48983043 None:intergenic 50.0%
TATGGTGAATCCCGAGCCAA+AGG - chr3_1:48983175-48983194 Msa0360200:intron 50.0%
ATGGTGAATCCCGAGCCAAA+GGG - chr3_1:48983176-48983195 Msa0360200:intron 50.0%
! AGAACCTAACCCTTTGGCTC+GGG + chr3_1:48983188-48983207 None:intergenic 50.0%
CAGAACCTAACCCTTTGGCT+CGG + chr3_1:48983189-48983208 None:intergenic 50.0%
AGCCAAAGGGTTAGGTTCTG+AGG - chr3_1:48983189-48983208 Msa0360200:intron 50.0%
GGTGGGTCTGATATACCTCT+CGG - chr3_1:48983466-48983485 Msa0360200:intron 50.0%
! GAATAGCTTCAAGGAAGCGC+TGG - chr3_1:48983854-48983873 Msa0360200:CDS 50.0%
GGCATAAACCAGCAGTACTG+TGG + chr3_1:48984312-48984331 None:intergenic 50.0%
!! AGGAGTATCCCAGCGAATGA+AGG - chr3_1:48984472-48984491 Msa0360200:intron 50.0%
CCACATGGTAAAACCAAGGC+AGG + chr3_1:48984884-48984903 None:intergenic 50.0%
!!! CCTGCCTTGGTTTTACCATG+TGG - chr3_1:48984881-48984900 Msa0360200:intron 50.0%
TCATTTGCAGGCCAACAGGA+AGG + chr3_1:48984931-48984950 None:intergenic 50.0%
CCAATCATTTGCAGGCCAAC+AGG + chr3_1:48984935-48984954 None:intergenic 50.0%
! CCTGTTGGCCTGCAAATGAT+TGG - chr3_1:48984932-48984951 Msa0360200:intron 50.0%
ACCCAATCAAACGCTCCCTT+AGG + chr3_1:48985099-48985118 None:intergenic 50.0%
!! GTGGTCTTATGCTCCGATGT+TGG - chr3_1:48985961-48985980 Msa0360200:intron 50.0%
!! TCCTGTAATTTTGGGGAGGG+GGG + chr3_1:48986123-48986142 None:intergenic 50.0%
!! CTCCTGTAATTTTGGGGAGG+GGG + chr3_1:48986124-48986143 None:intergenic 50.0%
! CAAGAGCAGGTTAGTTCAGC+TGG + chr3_1:48986283-48986302 None:intergenic 50.0%
AGATGTCCACCTTGAGGACA+AGG + chr3_1:48986357-48986376 None:intergenic 50.0%
CAGTGACTCGATCACACACA+AGG + chr3_1:48986436-48986455 None:intergenic 50.0%
CTTGTGTGTGATCGAGTCAC+TGG - chr3_1:48986434-48986453 Msa0360200:intron 50.0%
TCGAGTCACTGGTCCAAGAT+CGG - chr3_1:48986445-48986464 Msa0360200:intron 50.0%
! GGTTTGTTCCTCCCAACCAA+AGG - chr3_1:48986556-48986575 Msa0360200:intron 50.0%
! CGCTGCATTTTGCCCTAGAT+TGG - chr3_1:48987013-48987032 Msa0360200:intron 50.0%
ACGCCATCAGCTATGATTGG+TGG + chr3_1:48987483-48987502 None:intergenic 50.0%
! GCTGATGGCGTTGAATAACG+AGG - chr3_1:48987492-48987511 Msa0360200:CDS 50.0%
AGAGAGTGGAACGTGGGGTT+TGG + chr3_1:48979903-48979922 None:intergenic 55.0%
AGCGTGAGAGAGTGGAACGT+GGG + chr3_1:48979909-48979928 None:intergenic 55.0%
AAGCGTGAGAGAGTGGAACG+TGG + chr3_1:48979910-48979929 None:intergenic 55.0%
! AAGGGAGAAGCGTGAGAGAG+TGG + chr3_1:48979917-48979936 None:intergenic 55.0%
GTGTGTGAGAGTAGCTTGGG+TGG + chr3_1:48979956-48979975 None:intergenic 55.0%
GGGGTGTGTGAGAGTAGCTT+GGG + chr3_1:48979959-48979978 None:intergenic 55.0%
AGGGTGAGGATTTGAGAGGG+GGG + chr3_1:48979997-48980016 None:intergenic 55.0%
GCGAAGGGTGAGGATTTGAG+AGG + chr3_1:48980001-48980020 None:intergenic 55.0%
GGATTGAATGAGGTCGGTGG+CGG + chr3_1:48980049-48980068 None:intergenic 55.0%
GTGGGATTGAATGAGGTCGG+TGG + chr3_1:48980052-48980071 None:intergenic 55.0%
GGGTGAGGTGGGATTGAATG+AGG + chr3_1:48980059-48980078 None:intergenic 55.0%
ATTGGTCGGAAGGGAAGTGG+AGG + chr3_1:48980116-48980135 None:intergenic 55.0%
! GAGGAAGTTGGTCCTCTTGC+TGG - chr3_1:48980183-48980202 Msa0360200:three_prime_UTR 55.0%
! CTGATATGCCGTCGACTGGT+GGG - chr3_1:48980241-48980260 Msa0360200:three_prime_UTR 55.0%
! TGGTGGGTCGAGGATACTTG+AGG - chr3_1:48980257-48980276 Msa0360200:exon 55.0%
GGTGGGTCGAGGATACTTGA+GGG - chr3_1:48980258-48980277 Msa0360200:exon 55.0%
TCGGCCTCCATTTGATGCGA+CGG - chr3_1:48980284-48980303 Msa0360200:CDS 55.0%
TTCACCGCCGTCGCATCAAA+TGG + chr3_1:48980294-48980313 None:intergenic 55.0%
GACGGCGGTGAAGAGAGTTA+AGG - chr3_1:48980302-48980321 Msa0360200:CDS 55.0%
CGCCCTACAAAGTCAGAGTC+TGG + chr3_1:48980881-48980900 None:intergenic 55.0%
!! TGAGAGCGCCATACGAAGTC+TGG - chr3_1:48981157-48981176 Msa0360200:intron 55.0%
!! GAGAGCGCCATACGAAGTCT+GGG - chr3_1:48981158-48981177 Msa0360200:intron 55.0%
!! GTGTGGGGTTAGTGTTGGTG+AGG - chr3_1:48981451-48981470 Msa0360200:intron 55.0%
! GGTTTTTCTCCGTCTGTGGG+TGG - chr3_1:48981938-48981957 Msa0360200:intron 55.0%
TTAGCCAACCCACCCACAGA+CGG + chr3_1:48981950-48981969 None:intergenic 55.0%
AATAGGTGACTGCCAACCCG+TGG - chr3_1:48982060-48982079 Msa0360200:intron 55.0%
ATAGGTGACTGCCAACCCGT+GGG - chr3_1:48982061-48982080 Msa0360200:intron 55.0%
AGGAGGATCATCCGGAGGAT+CGG - chr3_1:48982100-48982119 Msa0360200:intron 55.0%
! AGGCAGCCGGCATCATTTTG+CGG - chr3_1:48982185-48982204 Msa0360200:intron 55.0%
CTTGAGACGCGCCCATATGT+TGG + chr3_1:48982227-48982246 None:intergenic 55.0%
GGTTCATCTGTCGCTGATGC+TGG - chr3_1:48982296-48982315 Msa0360200:intron 55.0%
TTGGACGAAGAGAGCGAGAG+GGG + chr3_1:48983022-48983041 None:intergenic 55.0%
GAATCCCGAGCCAAAGGGTT+AGG - chr3_1:48983181-48983200 Msa0360200:intron 55.0%
GGGACATATGCCCTTTCAGC+TGG - chr3_1:48983379-48983398 Msa0360200:intron 55.0%
AAGCAGCTGAAGGAGCTGCA+GGG + chr3_1:48983902-48983921 None:intergenic 55.0%
TAAGCAGCTGAAGGAGCTGC+AGG + chr3_1:48983903-48983922 None:intergenic 55.0%
!! AGAGCTCTGAGCCATTGAGC+AGG - chr3_1:48984286-48984305 Msa0360200:intron 55.0%
CAGTACTGTGGCCTGCTCAA+TGG + chr3_1:48984300-48984319 None:intergenic 55.0%
TCCCCCCTCCCCAAAATTAC+AGG - chr3_1:48986119-48986138 Msa0360200:intron 55.0%
TTTCCAGAGCTAGGGAGGAG+TGG + chr3_1:48986165-48986184 None:intergenic 55.0%
!! ACTCCTCCCTAGCTCTGGAA+AGG - chr3_1:48986164-48986183 Msa0360200:intron 55.0%
TTGGGGCCTTTCCAGAGCTA+GGG + chr3_1:48986173-48986192 None:intergenic 55.0%
ATTGGGGCCTTTCCAGAGCT+AGG + chr3_1:48986174-48986193 None:intergenic 55.0%
!! GTTGTGAGGGGTGTCTTGTG+AGG + chr3_1:48986328-48986347 None:intergenic 55.0%
TAGGGAGAGCTGCTGAGAGT+GGG - chr3_1:48987417-48987436 Msa0360200:CDS 55.0%
GAAAATGCGGTGGCTGAAGC+AGG - chr3_1:48987567-48987586 Msa0360200:CDS 55.0%
! GGAACGTGGGGTTTGGAGTG+TGG + chr3_1:48979896-48979915 None:intergenic 60.0%
GCGTGAGAGAGTGGAACGTG+GGG + chr3_1:48979908-48979927 None:intergenic 60.0%
! GGGGGTGTGTGAGAGTAGCT+TGG + chr3_1:48979960-48979979 None:intergenic 60.0%
GAGGATTTGAGAGGGGGGTG+CGG + chr3_1:48979992-48980011 None:intergenic 60.0%
!! GGAGAGGGTGTTGGTGCGAA+GGG + chr3_1:48980028-48980047 None:intergenic 60.0%
!! AATGAGGTCGGTGGCGGAGA+GGG + chr3_1:48980043-48980062 None:intergenic 60.0%
GAAGGAACGGAGGTGGGGTT+CGG + chr3_1:48980094-48980113 None:intergenic 60.0%
TGGAGGAAGGAACGGAGGTG+GGG + chr3_1:48980099-48980118 None:intergenic 60.0%
GTGGAGGAAGGAACGGAGGT+GGG + chr3_1:48980100-48980119 None:intergenic 60.0%
AGTGGAGGAAGGAACGGAGG+TGG + chr3_1:48980101-48980120 None:intergenic 60.0%
GGAAGTGGAGGAAGGAACGG+AGG + chr3_1:48980104-48980123 None:intergenic 60.0%
GTCGGAAGGGAAGTGGAGGA+AGG + chr3_1:48980112-48980131 None:intergenic 60.0%
!! GGGATTGGTCGGAAGGGAAG+TGG + chr3_1:48980119-48980138 None:intergenic 60.0%
!! CGAGGAGGGATTGGTCGGAA+GGG + chr3_1:48980125-48980144 None:intergenic 60.0%
! CTGAGCGAGGAGGGATTGGT+CGG + chr3_1:48980130-48980149 None:intergenic 60.0%
GTCATGTGCCTGAGCGAGGA+GGG + chr3_1:48980139-48980158 None:intergenic 60.0%
CCTCGACCGTAGAATCGCTG+CGG - chr3_1:48980158-48980177 Msa0360200:three_prime_UTR 60.0%
CTCGACCGTAGAATCGCTGC+GGG - chr3_1:48980159-48980178 Msa0360200:three_prime_UTR 60.0%
TCGACCGTAGAATCGCTGCG+GGG - chr3_1:48980160-48980179 Msa0360200:three_prime_UTR 60.0%
ACGGCTGATATGCCGTCGAC+TGG - chr3_1:48980237-48980256 Msa0360200:three_prime_UTR 60.0%
! GCTGATATGCCGTCGACTGG+TGG - chr3_1:48980240-48980259 Msa0360200:three_prime_UTR 60.0%
ATCCTCGACCCACCAGTCGA+CGG + chr3_1:48980252-48980271 None:intergenic 60.0%
GCCTCCATTTGATGCGACGG+CGG - chr3_1:48980287-48980306 Msa0360200:CDS 60.0%
ACCGCCGTCGCATCAAATGG+AGG + chr3_1:48980291-48980310 None:intergenic 60.0%
TTCTCCGTCTGTGGGTGGGT+TGG - chr3_1:48981943-48981962 Msa0360200:intron 60.0%
! AGGGTGCCAGGAGGATCATC+CGG - chr3_1:48982092-48982111 Msa0360200:intron 60.0%
GATCCTCCGGATGATCCTCC+TGG + chr3_1:48982101-48982120 None:intergenic 60.0%
AACTGCAGCTGCCGATCCTC+CGG + chr3_1:48982114-48982133 None:intergenic 60.0%
! TGGTGGAAGTGTGAGGCAGC+CGG - chr3_1:48982172-48982191 Msa0360200:intron 60.0%
! GAGAGCGAGAGGGGTACATG+AGG + chr3_1:48983013-48983032 None:intergenic 60.0%
AGCAGCTGAAGGAGCTGCAG+GGG + chr3_1:48983901-48983920 None:intergenic 60.0%
TGAGCAGGCCACAGTACTGC+TGG - chr3_1:48984301-48984320 Msa0360200:intron 60.0%
CCAAGGCAGGTAGTCCAGCT+AGG + chr3_1:48984871-48984890 None:intergenic 60.0%
CCTAGCTGGACTACCTGCCT+TGG - chr3_1:48984868-48984887 Msa0360200:intron 60.0%
!! GGATCGACTGGCCTTCCTGT+TGG - chr3_1:48984917-48984936 Msa0360200:intron 60.0%
TGTCCACTCCTCCCTAGCTC+TGG - chr3_1:48986159-48986178 Msa0360200:intron 60.0%
AGATGAGGGGTGAGAGGGAG+AGG + chr3_1:48986218-48986237 None:intergenic 60.0%
GTAGGGAGAGCTGCTGAGAG+TGG - chr3_1:48987416-48987435 Msa0360200:CDS 60.0%
! GATTTGAGAGGGGGGTGCGG+TGG + chr3_1:48979989-48980008 None:intergenic 65.0%
GAAGGGAGTGGCGAAGGGTG+AGG + chr3_1:48980011-48980030 None:intergenic 65.0%
GGTGCGAAGGGAGTGGCGAA+GGG + chr3_1:48980016-48980035 None:intergenic 65.0%
TGGTGCGAAGGGAGTGGCGA+AGG + chr3_1:48980017-48980036 None:intergenic 65.0%
!! GGGTGTTGGTGCGAAGGGAG+TGG + chr3_1:48980023-48980042 None:intergenic 65.0%
!! CGGAGAGGGTGTTGGTGCGA+AGG + chr3_1:48980029-48980048 None:intergenic 65.0%
!! GAATGAGGTCGGTGGCGGAG+AGG + chr3_1:48980044-48980063 None:intergenic 65.0%
! GGAGGTGGGGTTCGGTCAGA+CGG + chr3_1:48980086-48980105 None:intergenic 65.0%
!! GCGAGGAGGGATTGGTCGGA+AGG + chr3_1:48980126-48980145 None:intergenic 65.0%
CGACCAATCCCTCCTCGCTC+AGG - chr3_1:48980128-48980147 Msa0360200:three_prime_UTR 65.0%
GTGCCTGAGCGAGGAGGGAT+TGG + chr3_1:48980134-48980153 None:intergenic 65.0%
GGTCATGTGCCTGAGCGAGG+AGG + chr3_1:48980140-48980159 None:intergenic 65.0%
CGAGGTCATGTGCCTGAGCG+AGG + chr3_1:48980143-48980162 None:intergenic 65.0%
CCGCAGCGATTCTACGGTCG+AGG + chr3_1:48980161-48980180 None:intergenic 65.0%
CGACCGTAGAATCGCTGCGG+GGG - chr3_1:48980161-48980180 Msa0360200:three_prime_UTR 65.0%
CCTCCCCCGCAGCGATTCTA+CGG + chr3_1:48980167-48980186 None:intergenic 65.0%
ATCGCTGCGGGGGAGGAAGT+TGG - chr3_1:48980171-48980190 Msa0360200:three_prime_UTR 65.0%
GTGCCAGGAGGATCATCCGG+AGG - chr3_1:48982095-48982114 Msa0360200:intron 65.0%
CGGCAGCTGCAGTTTCTGCC+AGG - chr3_1:48982120-48982139 Msa0360200:intron 65.0%
GGGCCTTTCCAGAGCTAGGG+AGG + chr3_1:48986170-48986189 None:intergenic 65.0%
! GGGGTGCGGTGGTAGGTTGG+GGG + chr3_1:48979978-48979997 None:intergenic 70.0%
! GGGGGTGCGGTGGTAGGTTG+GGG + chr3_1:48979979-48979998 None:intergenic 70.0%
! GGGGGGTGCGGTGGTAGGTT+GGG + chr3_1:48979980-48979999 None:intergenic 70.0%
! AGGGGGGTGCGGTGGTAGGT+TGG + chr3_1:48979981-48980000 None:intergenic 70.0%
! TGAGAGGGGGGTGCGGTGGT+AGG + chr3_1:48979985-48980004 None:intergenic 70.0%
!! GTCGGTGGCGGAGAGGGTGT+TGG + chr3_1:48980037-48980056 None:intergenic 70.0%
CAGACGGAGGCGGGTGAGGT+GGG + chr3_1:48980070-48980089 None:intergenic 70.0%
TCAGACGGAGGCGGGTGAGG+TGG + chr3_1:48980071-48980090 None:intergenic 70.0%
! GGGTTCGGTCAGACGGAGGC+GGG + chr3_1:48980079-48980098 None:intergenic 70.0%
! GGGGTTCGGTCAGACGGAGG+CGG + chr3_1:48980080-48980099 None:intergenic 70.0%
! GGTGGGGTTCGGTCAGACGG+AGG + chr3_1:48980083-48980102 None:intergenic 70.0%
CCGTAGAATCGCTGCGGGGG+AGG - chr3_1:48980164-48980183 Msa0360200:three_prime_UTR 70.0%
! TGCCGTCGACTGGTGGGTCG+AGG - chr3_1:48980247-48980266 Msa0360200:three_prime_UTR 70.0%
CGGTCAGACGGAGGCGGGTG+AGG + chr3_1:48980074-48980093 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 48979774 48988007 48979774 ID=Msa0360200;Name=Msa0360200
chr3_1 mRNA 48979774 48988007 48979774 ID=Msa0360200-mRNA-1;Parent=Msa0360200;Name=Msa0360200-mRNA-1;_AED=0.10;_eAED=0.10;_QI=106|1|1|1|0.81|0.75|12|448|537
chr3_1 exon 48979774 48979871 48979774 ID=Msa0360200-mRNA-1:exon:8597;Parent=Msa0360200-mRNA-1
chr3_1 exon 48979902 48979947 48979902 ID=Msa0360200-mRNA-1:exon:8596;Parent=Msa0360200-mRNA-1
chr3_1 exon 48979968 48980361 48979968 ID=Msa0360200-mRNA-1:exon:8595;Parent=Msa0360200-mRNA-1
chr3_1 exon 48982811 48982924 48982811 ID=Msa0360200-mRNA-1:exon:8594;Parent=Msa0360200-mRNA-1
chr3_1 exon 48983717 48983766 48983717 ID=Msa0360200-mRNA-1:exon:8593;Parent=Msa0360200-mRNA-1
chr3_1 exon 48983851 48983944 48983851 ID=Msa0360200-mRNA-1:exon:8592;Parent=Msa0360200-mRNA-1
chr3_1 exon 48984346 48984423 48984346 ID=Msa0360200-mRNA-1:exon:8591;Parent=Msa0360200-mRNA-1
chr3_1 exon 48984571 48984646 48984571 ID=Msa0360200-mRNA-1:exon:8590;Parent=Msa0360200-mRNA-1
chr3_1 exon 48984786 48984880 48984786 ID=Msa0360200-mRNA-1:exon:8589;Parent=Msa0360200-mRNA-1
chr3_1 exon 48985005 48985184 48985005 ID=Msa0360200-mRNA-1:exon:8588;Parent=Msa0360200-mRNA-1
chr3_1 exon 48985405 48985716 48985405 ID=Msa0360200-mRNA-1:exon:8587;Parent=Msa0360200-mRNA-1
chr3_1 exon 48987377 48988007 48987377 ID=Msa0360200-mRNA-1:exon:8586;Parent=Msa0360200-mRNA-1
chr3_1 five_prime_UTR 48987902 48988007 48987902 ID=Msa0360200-mRNA-1:five_prime_utr;Parent=Msa0360200-mRNA-1
chr3_1 CDS 48987377 48987901 48987377 ID=Msa0360200-mRNA-1:cds;Parent=Msa0360200-mRNA-1
chr3_1 CDS 48985405 48985716 48985405 ID=Msa0360200-mRNA-1:cds;Parent=Msa0360200-mRNA-1
chr3_1 CDS 48985005 48985184 48985005 ID=Msa0360200-mRNA-1:cds;Parent=Msa0360200-mRNA-1
chr3_1 CDS 48984786 48984880 48984786 ID=Msa0360200-mRNA-1:cds;Parent=Msa0360200-mRNA-1
chr3_1 CDS 48984571 48984646 48984571 ID=Msa0360200-mRNA-1:cds;Parent=Msa0360200-mRNA-1
chr3_1 CDS 48984346 48984423 48984346 ID=Msa0360200-mRNA-1:cds;Parent=Msa0360200-mRNA-1
chr3_1 CDS 48983851 48983944 48983851 ID=Msa0360200-mRNA-1:cds;Parent=Msa0360200-mRNA-1
chr3_1 CDS 48983717 48983766 48983717 ID=Msa0360200-mRNA-1:cds;Parent=Msa0360200-mRNA-1
chr3_1 CDS 48982811 48982924 48982811 ID=Msa0360200-mRNA-1:cds;Parent=Msa0360200-mRNA-1
chr3_1 CDS 48980272 48980361 48980272 ID=Msa0360200-mRNA-1:cds;Parent=Msa0360200-mRNA-1
chr3_1 three_prime_UTR 48979968 48980271 48979968 ID=Msa0360200-mRNA-1:three_prime_utr;Parent=Msa0360200-mRNA-1
chr3_1 three_prime_UTR 48979902 48979947 48979902 ID=Msa0360200-mRNA-1:three_prime_utr;Parent=Msa0360200-mRNA-1
chr3_1 three_prime_UTR 48979774 48979871 48979774 ID=Msa0360200-mRNA-1:three_prime_utr;Parent=Msa0360200-mRNA-1
Gene Sequence

>Msa0360200

ATGAAAATGCTATCCACACTCCAAACCCCACGTTCCACTCTCTCACGCTTCTCCCTTCCATCATCCACAATCACCACCCAAGCTACTCTCACACACCCCCAACCTACCACCGCACCCCCCTCTCAAATCCTCACCCTTCGCCACTCCCTTCGCACCAACACCCTCTCCGCCACCGACCTCATTCAATCCCACCTCACCCGCCTCCGTCTGACCGAACCCCACCTCCGTTCCTTCCTCCACTTCCCTTCCGACCAATCCCTCCTCGCTCAGGCACATGACCTCGACCGTAGAATCGCTGCGGGGGAGGAAGTTGGTCCTCTTGCTGGTGTTCTTGTTGCTGTTAAGGATAATATATGTACGGCTGATATGCCGTCGACTGGTGGGTCGAGGATACTTGAGGGTTATCGGCCTCCATTTGATGCGACGGCGGTGAAGAGAGTTAAGGAGTTGGGTGGGATTGTTGTTGGGAAGACGAATATGGATGAGTTTGGTATGGGGAGTACCACTGAAGCTTCTGCATTTCAGGTGACTGCCAACCCGTGGGATGTTAATAGGGTGCCAGGAGGATCATCCGGAGGATCGGCAGCTGCAGTTTCTGCCAGGCAATGTGTTGTATCGTTGGGAAGTGATACTGGTGGAAGTGTGAGGCAGCCGGCATCATTTTGCGGTGTTGTAGGTTTGAAGCCAACATATGGGCGCGTCTCAAGATTTGGACTCATGGCGTATGCGTCATCACTTGATGCCATTGGCTGCTTTGGTTCATCTGTCGCTGATGCTGGGATTCTCCTCCATGCAATTGCTGGTCATGATAGATTTGATGCCACATCAAGTAAGCAGGAGGTGCCCAATTTTCTATCTCATTTTGACTATGCAAGTTCTTTGGAAAGTAAGCCCTTGAAAGGACTGAGAATTGGTTTGATTCGTGAAACTATTGAAGATGGTGTTGATGCTGGAGTAGTTTCTGCAATTTGTGATGCTGCTTCACATTTTGAGGCATTAGGATGCTCTGTGAACGAGGTGTCACTGCCATCCTTTTCACTTGGGTTGCCAGCATACTATGTCCTCGCTTTGTCTGAATCATCTTCCAACTTGTCTCGCTATGATGGTATTAGATATGGAAACCAAGTTTATGCTGATGAGCTAGACTCTCTCTATGGTGAATCCCGAGCCAAAGGGTTAGGTTCTGAGGTGAAAATGAGAATTTTGATGGGGACATATGCCCTTTCAGCTGGTTACTATGATGCATATTACAAACGAGCGCAGCAGGTGAGAACCATTATAAGGAATAGCTTCAAGGAAGCGCTGGACCAATATGATATCTTGATTTCCCCTGCAGCTCCTTCAGCTGCTTATAAAATTGGTGAAAAGAAAAATGATCCTTTGGCTATGTATGCTGGTGACATCATGACTGTAAATGTCAACCTAGCTGGACTACCTGCCTTGGTTTTACCATGTGGATTTATTGAGAATGGATCGACTGGCCTTCCTGTTGGCCTGCAAATGATTGGTGCAGCATTTAATGAGGGAGAGCTGCTGAGAGTGGGACATATCTTTGAGCAAACTCTTGAGAATTGCAGATTTGTTCCACCAATCATAGCTGATGGCGTTGAATAA
Protein sequence

>Msa0360200

MKMLSTLQTPRSTLSRFSLPSSTITTQATLTHPQPTTAPPSQILTLRHSLRTNTLSATDLIQSHLTRLRLTEPHLRSFLHFPSDQSLLAQAHDLDRRIAAGEEVGPLAGVLVAVKDNICTADMPSTGGSRILEGYRPPFDATAVKRVKELGGIVVGKTNMDEFGMGSTTEASAFQVTANPWDVNRVPGGSSGGSAAAVSARQCVVSLGSDTGGSVRQPASFCGVVGLKPTYGRVSRFGLMAYASSLDAIGCFGSSVADAGILLHAIAGHDRFDATSSKQEVPNFLSHFDYASSLESKPLKGLRIGLIRETIEDGVDAGVVSAICDAASHFEALGCSVNEVSLPSFSLGLPAYYVLALSESSSNLSRYDGIRYGNQVYADELDSLYGESRAKGLGSEVKMRILMGTYALSAGYYDAYYKRAQQVRTIIRNSFKEALDQYDILISPAAPSAAYKIGEKKNDPLAMYAGDIMTVNVNLAGLPALVLPCGFIENGSTGLPVGLQMIGAAFNEGELLRVGHIFEQTLENCRFVPPIIADGVE*