AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0034330


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0034330 MtrunA17_Chr1g0193701 94.624 93 5 0 2 94 182 274 3.72e-60 184
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0034330 AT4G01650.2 57.778 90 36 1 2 89 120 209 1.73e-30 107
Msa0034330 AT4G01650.1 57.778 90 36 1 2 89 197 286 1.20e-29 107

Find 89 sgRNAs with CRISPR-Local

Find 249 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCACCCCTTACGGATTTA+AGG 0.165307 1_1:-62266422 None:intergenic
CTGCAAGAGTCGAGCAAAAT+TGG 0.187080 1_1:-62263734 None:intergenic
ATCATCATCGGTGTCGTTTA+AGG 0.240676 1_1:-62263476 None:intergenic
AACGACACCGATGATGATTC+TGG 0.246364 1_1:+62263481 Msa0034330:five_prime_UTR
ATAATCTTTAATACGGATAA+TGG 0.263799 1_1:-62264050 None:intergenic
TTCAGCTCTTTGAAGGAAAA+TGG 0.271309 1_1:+62265533 Msa0034330:CDS
TGATGATTCTGGGACTTTAT+TGG 0.289143 1_1:+62263492 Msa0034330:five_prime_UTR
AGGTTGGCTGATTTCATTCC+TGG 0.313493 1_1:+62263679 Msa0034330:five_prime_UTR
AGAGAAGAGAAGGGTGGAAA+TGG 0.316503 1_1:-62263356 None:intergenic
CTCAGTAAATTGATCCAAAA+AGG 0.327199 1_1:+62263709 Msa0034330:five_prime_UTR
GGAGAGCAGAACTTGGCATT+TGG 0.347544 1_1:+62265403 Msa0034330:five_prime_UTR
ACGCTTCACTTGATTCCATT+TGG 0.351261 1_1:+62263635 Msa0034330:five_prime_UTR
GAGAGCAGAACTTGGCATTT+GGG 0.357576 1_1:+62265404 Msa0034330:five_prime_UTR
AGGAAAGTTTGCGTGGAAAC+TGG 0.376996 1_1:-62263305 None:intergenic
TAATACAAGTAAAGTTCATT+TGG 0.385292 1_1:+62266520 Msa0034330:three_prime_UTR
TCACGAGGAACTGTGCTATA+AGG 0.392002 1_1:+62264096 Msa0034330:five_prime_UTR
CGAAGATGTGGTTGCCCGTT+GGG 0.403416 1_1:+62266361 Msa0034330:CDS
TCGGTGTCGTTTAAGGTGGT+TGG 0.404356 1_1:-62263469 None:intergenic
CGGTGTCGTTTAAGGTGGTT+GGG 0.405611 1_1:-62263468 None:intergenic
GTATTAAAGATTATGTGTAT+TGG 0.406020 1_1:+62264059 Msa0034330:five_prime_UTR
TCAGAGTCGTTGGTTGAAGA+TGG 0.419018 1_1:+62263541 Msa0034330:five_prime_UTR
TAATCTTTAATACGGATAAT+GGG 0.424466 1_1:-62264049 None:intergenic
TTTCAGAGCTTCACCCCTTA+CGG 0.429324 1_1:-62266430 None:intergenic
TAAGGTGGTTGGGTTGTGTT+TGG 0.430644 1_1:-62263458 None:intergenic
AATATCTTCAAGTTCTTGAC+TGG 0.431794 1_1:+62266595 Msa0034330:three_prime_UTR
CTTAGGTAAAGCTGCAAGCT+TGG 0.443334 1_1:+62266555 Msa0034330:three_prime_UTR
CTACCCTCTATCAGCCCAAC+GGG 0.445050 1_1:-62266375 None:intergenic
GGGTTAAAATTTGATGCTAA+AGG 0.447148 1_1:+62265424 Msa0034330:five_prime_UTR
CCAACGGGCAACCACATCTT+CGG 0.447460 1_1:-62266360 None:intergenic
ATCAGTCAAGATATTCCAAA+TGG 0.452946 1_1:-62263650 None:intergenic
TCTGGGACTTTATTGGTGAC+AGG 0.457534 1_1:+62263499 Msa0034330:five_prime_UTR
TTTGGTGTCAATTCTCACTT+AGG 0.457581 1_1:+62266538 Msa0034330:three_prime_UTR
TGCAAGAGTCGAGCAAAATT+GGG 0.469520 1_1:-62263733 None:intergenic
GTCGTGTTAATTTCACGAAC+CGG 0.472895 1_1:-62266312 None:intergenic
CAGAGTCGTTGGTTGAAGAT+GGG 0.478415 1_1:+62263542 Msa0034330:five_prime_UTR
ATAGACTTCAAGATGATTGA+AGG 0.479763 1_1:+62265505 Msa0034330:CDS
TTAACCTGCATTATCAATTG+TGG 0.483192 1_1:+62263189 Msa0034330:five_prime_UTR
CTTGACTGATTATGAAAGGT+TGG 0.487454 1_1:+62263663 Msa0034330:five_prime_UTR
GAGGGTGTGAAATGAAAAGG+GGG 0.500049 1_1:-62263382 None:intergenic
TTGCCCACAATTGATAATGC+AGG 0.500345 1_1:-62263193 None:intergenic
AATACACATAATCTTTAATA+CGG 0.502762 1_1:-62264057 None:intergenic
ACGACACCGATGATGATTCT+GGG 0.503280 1_1:+62263482 Msa0034330:five_prime_UTR
TAACCTGCATTATCAATTGT+GGG 0.503628 1_1:+62263190 Msa0034330:five_prime_UTR
AAAAGAACCTTAAATCCGTA+AGG 0.508599 1_1:+62266415 Msa0034330:CDS
GTGAGGGTGTGAAATGAAAA+GGG 0.510813 1_1:-62263384 None:intergenic
GGTGAGGGTGTGAAATGAAA+AGG 0.512236 1_1:-62263385 None:intergenic
GAAATGGAAGCCGGTGGTGA+TGG 0.514183 1_1:-62263340 None:intergenic
CCGAAGATGTGGTTGCCCGT+TGG 0.516968 1_1:+62266360 Msa0034330:CDS
AGTTGAAGATTCAGAGTCGT+TGG 0.518855 1_1:+62263531 Msa0034330:five_prime_UTR
GAATTGGAGACTCTTCCATC+TGG 0.520472 1_1:+62265469 Msa0034330:five_prime_UTR
CTGGGACTTTATTGGTGACA+GGG 0.522099 1_1:+62263500 Msa0034330:five_prime_UTR
TGAGGGTGTGAAATGAAAAG+GGG 0.522808 1_1:-62263383 None:intergenic
TGGAAGTTGTGAGGACTCTC+CGG 0.533175 1_1:+62266293 Msa0034330:CDS
GTTGCCCGTTGGGCTGATAG+AGG 0.535819 1_1:+62266371 Msa0034330:CDS
ACAGATTGGAGAGCAGAACT+TGG 0.540322 1_1:+62265396 Msa0034330:intron
ATAAGCGAAAGAGAATATAC+AGG 0.542335 1_1:+62263243 Msa0034330:five_prime_UTR
AAAGAACCTTAAATCCGTAA+GGG 0.553093 1_1:+62266416 Msa0034330:CDS
GATGTTTAACGAACATGACT+TGG 0.555776 1_1:-62263407 None:intergenic
TAGACTTCAAGATGATTGAA+GGG 0.561714 1_1:+62265506 Msa0034330:CDS
ATTCACGCAGAATTGAGTCT+AGG 0.570895 1_1:+62263602 Msa0034330:five_prime_UTR
AGGGAGTAGGAAAGTTTGCG+TGG 0.574352 1_1:-62263312 None:intergenic
AGCCGGTGGTGATGGTTGAG+AGG 0.578186 1_1:-62263332 None:intergenic
AGAGTCGTTGGTTGAAGATG+GGG 0.585019 1_1:+62263543 Msa0034330:five_prime_UTR
GCCGGTGGTGATGGTTGAGA+GGG 0.588493 1_1:-62263331 None:intergenic
ATCATCGGTGTCGTTTAAGG+TGG 0.588547 1_1:-62263473 None:intergenic
TTGGAAGCGCGATACAAAGA+AGG 0.590076 1_1:-62263439 None:intergenic
ATGTCACGCTTCATACCAGA+TGG 0.591702 1_1:-62265484 None:intergenic
GGTGATGGTTGAGAGGGAGT+AGG 0.596556 1_1:-62263325 None:intergenic
AACGAACATGACTTGGGTGA+GGG 0.599864 1_1:-62263400 None:intergenic
TTGCCCGTTGGGCTGATAGA+GGG 0.601510 1_1:+62266372 Msa0034330:CDS
ATATCTTGACTGATTATGAA+AGG 0.602548 1_1:+62263659 Msa0034330:five_prime_UTR
AGAAGGGTGGAAATGGAAGC+CGG 0.605384 1_1:-62263349 None:intergenic
ATGTTTAACGAACATGACTT+GGG 0.610648 1_1:-62263406 None:intergenic
AGACTTCAAGATGATTGAAG+GGG 0.615498 1_1:+62265507 Msa0034330:CDS
AATTTACTGAGGGCAAGACC+AGG 0.620856 1_1:-62263697 None:intergenic
TGGGACTTTATTGGTGACAG+GGG 0.624233 1_1:+62263501 Msa0034330:five_prime_UTR
AAGAACCTTAAATCCGTAAG+GGG 0.627039 1_1:+62266417 Msa0034330:CDS
GGGGTGAGAGAAGAGAAGGG+TGG 0.628709 1_1:-62263362 None:intergenic
TCCCTCTCAACCATCACCAC+CGG 0.629413 1_1:+62263330 Msa0034330:five_prime_UTR
TAACGAACATGACTTGGGTG+AGG 0.630441 1_1:-62263401 None:intergenic
GACACAACACGGCTCTCACG+AGG 0.633811 1_1:+62264081 Msa0034330:five_prime_UTR
TTTCAGCGATGGAAGTTGTG+AGG 0.646341 1_1:+62266284 Msa0034330:CDS
TCTACCCTCTATCAGCCCAA+CGG 0.653017 1_1:-62266376 None:intergenic
TAAAGTCCCAGAATCATCAT+CGG 0.654239 1_1:-62263488 None:intergenic
TATGTGTATTGGACACAACA+CGG 0.687972 1_1:+62264070 Msa0034330:five_prime_UTR
TTGATGTTAAGCCGAAGATG+TGG 0.693995 1_1:+62266349 Msa0034330:CDS
ATCTTTGACTCAATCAACGT+AGG 0.697511 1_1:-62263146 None:intergenic
AGGGTGTGAAATGAAAAGGG+GGG 0.736177 1_1:-62263381 None:intergenic
AGGGTGGAAATGGAAGCCGG+TGG 0.756426 1_1:-62263346 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACTTTTCATTTTTTATTAAT+CGG + chr1_1:62263873-62263892 Msa0034330:intron 10.0%
!!! CTTTTCATTTTTTATTAATC+GGG + chr1_1:62263874-62263893 Msa0034330:intron 15.0%
!! AATACACATAATCTTTAATA+CGG - chr1_1:62264060-62264079 None:intergenic 15.0%
!!! ACTTGATTTTATTAAATTCA+CGG + chr1_1:62264217-62264236 Msa0034330:intron 15.0%
!! TTGTTTATATTGCAAATTTA+GGG - chr1_1:62264495-62264514 None:intergenic 15.0%
!! TTTGTTTATATTGCAAATTT+AGG - chr1_1:62264496-62264515 None:intergenic 15.0%
!! AAATTTGCAATATAAACAAA+AGG + chr1_1:62264496-62264515 Msa0034330:intron 15.0%
!!! ATTGTTATTTTCATCAAATA+CGG + chr1_1:62264608-62264627 Msa0034330:intron 15.0%
!! ATAAGAAGAAAAAAAAACAT+AGG + chr1_1:62264757-62264776 Msa0034330:intron 15.0%
!!! ATTTTCTTGAAAAGAAAATT+TGG + chr1_1:62265339-62265358 Msa0034330:intron 15.0%
!! TCGAAAACAAAATAAAAATA+AGG - chr1_1:62265751-62265770 None:intergenic 15.0%
!! TTGTAATTAAAAGTAAAAAC+AGG + chr1_1:62265869-62265888 Msa0034330:intron 15.0%
!!! TTATGTAAATTTTAGAAACT+AGG - chr1_1:62265936-62265955 None:intergenic 15.0%
!! TAAAATTTACATAAACTTAG+TGG + chr1_1:62265942-62265961 Msa0034330:intron 15.0%
!!! TAGGAATTACTCTAATTTTT+TGG - chr1_1:62264009-62264028 None:intergenic 20.0%
!! TAATCTTTAATACGGATAAT+GGG - chr1_1:62264052-62264071 None:intergenic 20.0%
!! ATAATCTTTAATACGGATAA+TGG - chr1_1:62264053-62264072 None:intergenic 20.0%
!! GTATTAAAGATTATGTGTAT+TGG + chr1_1:62264059-62264078 Msa0034330:five_prime_UTR 20.0%
!! ATTCTAGATATAAAAGTAGT+AGG + chr1_1:62264242-62264261 Msa0034330:intron 20.0%
!!! AAACTGTATAGTTCTAAATA+GGG + chr1_1:62264338-62264357 Msa0034330:intron 20.0%
!!! AAATGCTGTATTTTATAGTT+TGG + chr1_1:62264436-62264455 Msa0034330:intron 20.0%
!!! TATGTTTTAGCATTTAAAAC+CGG - chr1_1:62264647-62264666 None:intergenic 20.0%
!!! AGGATATGATTTTGAATATT+AGG + chr1_1:62265122-62265141 Msa0034330:intron 20.0%
!! GGTTAAAATTAAACTGTATA+TGG + chr1_1:62265143-62265162 Msa0034330:intron 20.0%
!!! AAATAAGGTATCATTTAAAG+AGG - chr1_1:62265736-62265755 None:intergenic 20.0%
!! TGGTGAAAATAATGAAAAAT+TGG - chr1_1:62265796-62265815 None:intergenic 20.0%
!!! ACAATTTTTTAAACCAAACA+TGG + chr1_1:62265909-62265928 Msa0034330:intron 20.0%
!! AATTGCACATATTGAAAATT+GGG - chr1_1:62266150-62266169 None:intergenic 20.0%
!! TAATACAAGTAAAGTTCATT+TGG + chr1_1:62266520-62266539 Msa0034330:three_prime_UTR 20.0%
!!! AAGAACTTGAAGATATTTTA+GGG - chr1_1:62266592-62266611 None:intergenic 20.0%
! ATATCTTGACTGATTATGAA+AGG + chr1_1:62263659-62263678 Msa0034330:five_prime_UTR 25.0%
!! TTTTTGGATCAATTTACTGA+GGG - chr1_1:62263710-62263729 None:intergenic 25.0%
! ATATTGTATTAGTGTTGTGT+TGG + chr1_1:62263840-62263859 Msa0034330:intron 25.0%
! TATTGTATTAGTGTTGTGTT+GGG + chr1_1:62263841-62263860 Msa0034330:intron 25.0%
!!! TTCATTTTTTATTAATCGGG+CGG + chr1_1:62263877-62263896 Msa0034330:intron 25.0%
! AATAATACAACCTAGAAAGT+AGG - chr1_1:62264028-62264047 None:intergenic 25.0%
! TAGATATAAAAGTAGTAGGA+AGG + chr1_1:62264246-62264265 Msa0034330:intron 25.0%
! AGATATAAAAGTAGTAGGAA+GGG + chr1_1:62264247-62264266 Msa0034330:intron 25.0%
!! TTAGAACTATACAGTTTGTT+TGG - chr1_1:62264335-62264354 None:intergenic 25.0%
!!! CAAACTGTATAGTTCTAAAT+AGG + chr1_1:62264337-62264356 Msa0034330:intron 25.0%
!! GTTTTCAATTCAATGTAGTT+TGG + chr1_1:62264551-62264570 Msa0034330:intron 25.0%
!!! TGTTTTAACAGTAACACTTT+AGG - chr1_1:62264815-62264834 None:intergenic 25.0%
!! AAGTGTTACTGTTAAAACAT+AGG + chr1_1:62264816-62264835 Msa0034330:intron 25.0%
! TTAAAATAAAAAGCCACTCA+TGG - chr1_1:62264845-62264864 None:intergenic 25.0%
! TATGATTTCCATATATGTCA+TGG + chr1_1:62264927-62264946 Msa0034330:intron 25.0%
! TAACTATACCTTTAAACTGT+GGG + chr1_1:62264992-62265011 Msa0034330:intron 25.0%
! TAACTTGGAGAAAGTAAATT+AGG - chr1_1:62265233-62265252 None:intergenic 25.0%
!! CATTGAATTTCTAAAGGTTA+AGG - chr1_1:62265259-62265278 None:intergenic 25.0%
!! CTTAACCTTTAGAAATTCAA+TGG + chr1_1:62265257-62265276 Msa0034330:intron 25.0%
!!! AGATTGTTTTGAGAAAGAAT+TGG + chr1_1:62265453-62265472 Msa0034330:five_prime_UTR 25.0%
! TCAGAAGAATTCTAATAAGA+GGG - chr1_1:62265590-62265609 None:intergenic 25.0%
! TTCAGAAGAATTCTAATAAG+AGG - chr1_1:62265591-62265610 None:intergenic 25.0%
!!! TTGGATTTTTAGAACTGAAT+AGG + chr1_1:62265688-62265707 Msa0034330:intron 25.0%
! AAAAACAGGAGTTGAAAATT+AGG + chr1_1:62265883-62265902 Msa0034330:intron 25.0%
! ATTGCACATATTGAAAATTG+GGG - chr1_1:62266149-62266168 None:intergenic 25.0%
! CAATTGCACATATTGAAAAT+TGG - chr1_1:62266151-62266170 None:intergenic 25.0%
!!! ATTACATTTTGAAACCATGT+AGG + chr1_1:62266196-62266215 Msa0034330:intron 25.0%
!!! AGAACTTGAAGATATTTTAG+GGG - chr1_1:62266591-62266610 None:intergenic 25.0%
!! CAAGAACTTGAAGATATTTT+AGG - chr1_1:62266593-62266612 None:intergenic 25.0%
TTAACCTGCATTATCAATTG+TGG + chr1_1:62263189-62263208 Msa0034330:five_prime_UTR 30.0%
TAACCTGCATTATCAATTGT+GGG + chr1_1:62263190-62263209 Msa0034330:five_prime_UTR 30.0%
ATAAGCGAAAGAGAATATAC+AGG + chr1_1:62263243-62263262 Msa0034330:five_prime_UTR 30.0%
ATGTTTAACGAACATGACTT+GGG - chr1_1:62263409-62263428 None:intergenic 30.0%
ATCAGTCAAGATATTCCAAA+TGG - chr1_1:62263653-62263672 None:intergenic 30.0%
! CTTTTTGGATCAATTTACTG+AGG - chr1_1:62263711-62263730 None:intergenic 30.0%
CTCAGTAAATTGATCCAAAA+AGG + chr1_1:62263709-62263728 Msa0034330:five_prime_UTR 30.0%
!!! TCATTTTTTATTAATCGGGC+GGG + chr1_1:62263878-62263897 Msa0034330:intron 30.0%
ATATCAACATTGTTGAGCTA+GGG - chr1_1:62263927-62263946 None:intergenic 30.0%
AATATCAACATTGTTGAGCT+AGG - chr1_1:62263928-62263947 None:intergenic 30.0%
TAGAGTAATTCCTACTTTCT+AGG + chr1_1:62264015-62264034 Msa0034330:intron 30.0%
GATATAAAAGTAGTAGGAAG+GGG + chr1_1:62264248-62264267 Msa0034330:intron 30.0%
!!! TTGGTTTTGCTTCTTTGTAA+TGG + chr1_1:62264455-62264474 Msa0034330:intron 30.0%
! TATATTGCAAATTTAGGGCA+AGG - chr1_1:62264490-62264509 None:intergenic 30.0%
! AACAAAAGGCTTATTGATTG+AGG + chr1_1:62264510-62264529 Msa0034330:intron 30.0%
! ACAAAAGGCTTATTGATTGA+GGG + chr1_1:62264511-62264530 Msa0034330:intron 30.0%
TTCTTATCTACTCTAGTATG+AGG - chr1_1:62264744-62264763 None:intergenic 30.0%
ATAGGTCAACATGATTATGT+TGG + chr1_1:62264775-62264794 Msa0034330:intron 30.0%
ATGATTATATGCCATGAAGT+AGG - chr1_1:62264881-62264900 None:intergenic 30.0%
CATAACTTCCATGACATATA+TGG - chr1_1:62264938-62264957 None:intergenic 30.0%
GTAACTATACCTTTAAACTG+TGG + chr1_1:62264991-62265010 Msa0034330:intron 30.0%
TAAAGGTTAAGGTTGTAACT+TGG - chr1_1:62265248-62265267 None:intergenic 30.0%
! TTTTTCCCTGTTCGTAAATT+TGG + chr1_1:62265308-62265327 Msa0034330:intron 30.0%
TCAAACCAAATTTACGAACA+GGG - chr1_1:62265316-62265335 None:intergenic 30.0%
TTCAAACCAAATTTACGAAC+AGG - chr1_1:62265317-62265336 None:intergenic 30.0%
GTTCCATTATCTTAACAGAT+TGG + chr1_1:62265382-62265401 Msa0034330:intron 30.0%
TCTCCAATCTGTTAAGATAA+TGG - chr1_1:62265388-62265407 None:intergenic 30.0%
GGGTTAAAATTTGATGCTAA+AGG + chr1_1:62265424-62265443 Msa0034330:five_prime_UTR 30.0%
ATAGACTTCAAGATGATTGA+AGG + chr1_1:62265505-62265524 Msa0034330:CDS 30.0%
TAGACTTCAAGATGATTGAA+GGG + chr1_1:62265506-62265525 Msa0034330:CDS 30.0%
CAGAAGAATTCTAATAAGAG+GGG - chr1_1:62265589-62265608 None:intergenic 30.0%
!! CGCAAGTATTTTTCAAATGT+TGG + chr1_1:62265669-62265688 Msa0034330:intron 30.0%
!! TTTTGGTAACCAACTACAAA+TGG + chr1_1:62265980-62265999 Msa0034330:intron 30.0%
!!! TAGCTTTTGACTTGACAAAA+AGG + chr1_1:62266078-62266097 Msa0034330:intron 30.0%
AAAAGAACCTTAAATCCGTA+AGG + chr1_1:62266415-62266434 Msa0034330:CDS 30.0%
AAAGAACCTTAAATCCGTAA+GGG + chr1_1:62266416-62266435 Msa0034330:CDS 30.0%
! AATATCTTCAAGTTCTTGAC+TGG + chr1_1:62266595-62266614 Msa0034330:three_prime_UTR 30.0%
ATCTTTGACTCAATCAACGT+AGG - chr1_1:62263149-62263168 None:intergenic 35.0%
GATGTTTAACGAACATGACT+TGG - chr1_1:62263410-62263429 None:intergenic 35.0%
TAAAGTCCCAGAATCATCAT+CGG - chr1_1:62263491-62263510 None:intergenic 35.0%
!! TGATGATTCTGGGACTTTAT+TGG + chr1_1:62263492-62263511 Msa0034330:five_prime_UTR 35.0%
CTTGACTGATTATGAAAGGT+TGG + chr1_1:62263663-62263682 Msa0034330:five_prime_UTR 35.0%
TCTTGCAGGTATAATGCAAT+TGG + chr1_1:62263749-62263768 Msa0034330:intron 35.0%
CTTGCAGGTATAATGCAATT+GGG + chr1_1:62263750-62263769 Msa0034330:intron 35.0%
TTGCAGGTATAATGCAATTG+GGG + chr1_1:62263751-62263770 Msa0034330:intron 35.0%
TAAGTTAGACACATTCACTC+AGG + chr1_1:62263950-62263969 Msa0034330:intron 35.0%
!! TTTTTGGTCTGTAAACGAAG+TGG - chr1_1:62263993-62264012 None:intergenic 35.0%
TATGTGTATTGGACACAACA+CGG + chr1_1:62264070-62264089 Msa0034330:five_prime_UTR 35.0%
GTTTAGTTGCATGCTTGATT+TGG + chr1_1:62264126-62264145 Msa0034330:intron 35.0%
ACATAAAATGACCTTGTTGG+TGG - chr1_1:62264286-62264305 None:intergenic 35.0%
TCGACATAAAATGACCTTGT+TGG - chr1_1:62264289-62264308 None:intergenic 35.0%
! AAATTTAGGGCAAGGTCATA+AGG - chr1_1:62264482-62264501 None:intergenic 35.0%
! CAAAAGGCTTATTGATTGAG+GGG + chr1_1:62264512-62264531 Msa0034330:intron 35.0%
TTATCTACTCTAGTATGAGG+TGG - chr1_1:62264741-62264760 None:intergenic 35.0%
!!! GTTTTTTGTGACAGATAGAC+AGG + chr1_1:62265102-62265121 Msa0034330:intron 35.0%
! CCTTTAGAAATTCAATGGCA+CGG + chr1_1:62265262-62265281 Msa0034330:intron 35.0%
AGACTTCAAGATGATTGAAG+GGG + chr1_1:62265507-62265526 Msa0034330:CDS 35.0%
! TTCAGCTCTTTGAAGGAAAA+TGG + chr1_1:62265533-62265552 Msa0034330:CDS 35.0%
! AGGAAAATGGTCTATTTTGC+AGG + chr1_1:62265546-62265565 Msa0034330:CDS 35.0%
! AAATGGTCTATTTTGCAGGT+AGG + chr1_1:62265550-62265569 Msa0034330:intron 35.0%
! AGTTTGCATGGTTTTTATGC+TGG - chr1_1:62265615-62265634 None:intergenic 35.0%
! TAGAGAAGTGCATAAAACTC+TGG - chr1_1:62265646-62265665 None:intergenic 35.0%
! ATTTTCACCATTTCCTATGC+TGG + chr1_1:62265806-62265825 Msa0034330:intron 35.0%
TTAGAAACTAGGACCATGTT+TGG - chr1_1:62265925-62265944 None:intergenic 35.0%
AAATGGAGTGCATCTTATCT+TGG + chr1_1:62265997-62266016 Msa0034330:intron 35.0%
TGGAAAGTCTGCTATTATTC+AGG + chr1_1:62266017-62266036 Msa0034330:intron 35.0%
! TATTCAGGTTATTGACCAAG+TGG + chr1_1:62266032-62266051 Msa0034330:intron 35.0%
! ATTCAGGTTATTGACCAAGT+GGG + chr1_1:62266033-62266052 Msa0034330:intron 35.0%
ATCATAATCACAATCCCACT+TGG - chr1_1:62266050-62266069 None:intergenic 35.0%
CACATATTGAAAATTGGGGA+AGG - chr1_1:62266145-62266164 None:intergenic 35.0%
! ACTTGTTGAATACTCCTACA+TGG - chr1_1:62266213-62266232 None:intergenic 35.0%
AAGAACCTTAAATCCGTAAG+GGG + chr1_1:62266417-62266436 Msa0034330:CDS 35.0%
!! TTTGGTGTCAATTCTCACTT+AGG + chr1_1:62266538-62266557 Msa0034330:three_prime_UTR 35.0%
!! TTGCCCACAATTGATAATGC+AGG - chr1_1:62263196-62263215 None:intergenic 40.0%
! TGAGGGTGTGAAATGAAAAG+GGG - chr1_1:62263386-62263405 None:intergenic 40.0%
! GTGAGGGTGTGAAATGAAAA+GGG - chr1_1:62263387-62263406 None:intergenic 40.0%
!! ATCATCATCGGTGTCGTTTA+AGG - chr1_1:62263479-62263498 None:intergenic 40.0%
AGTTGAAGATTCAGAGTCGT+TGG + chr1_1:62263531-62263550 Msa0034330:five_prime_UTR 40.0%
ATTCACGCAGAATTGAGTCT+AGG + chr1_1:62263602-62263621 Msa0034330:five_prime_UTR 40.0%
ACGCTTCACTTGATTCCATT+TGG + chr1_1:62263635-62263654 Msa0034330:five_prime_UTR 40.0%
! GAGCAAAATTGGGACCTTTT+TGG - chr1_1:62263726-62263745 None:intergenic 40.0%
TGCAAGAGTCGAGCAAAATT+GGG - chr1_1:62263736-62263755 None:intergenic 40.0%
!! CATGCTTGATTTGGCAAGTT+TGG + chr1_1:62264135-62264154 Msa0034330:intron 40.0%
!! GGTAACTTCTAGTTTGCTCA+GGG - chr1_1:62264314-62264333 None:intergenic 40.0%
!! TGGTAACTTCTAGTTTGCTC+AGG - chr1_1:62264315-62264334 None:intergenic 40.0%
TTAGATGCAGCCACTGTATT+AGG - chr1_1:62264369-62264388 None:intergenic 40.0%
! AGCATTTAAAACCGGTCCAA+CGG - chr1_1:62264639-62264658 None:intergenic 40.0%
! ATGTGAAGCATCCTACTTCA+TGG + chr1_1:62264867-62264886 Msa0034330:intron 40.0%
AGTTATGTATGCATCAGTCG+TGG + chr1_1:62264951-62264970 Msa0034330:intron 40.0%
GTTATGTATGCATCAGTCGT+GGG + chr1_1:62264952-62264971 Msa0034330:intron 40.0%
TCAGTACTCCCACAGTTTAA+AGG - chr1_1:62265003-62265022 None:intergenic 40.0%
TCTTGGTGAATGAAATGTCC+AGG + chr1_1:62265023-62265042 Msa0034330:intron 40.0%
CATCATAGCATAGCCAAGTA+TGG + chr1_1:62265174-62265193 Msa0034330:intron 40.0%
! CCGTGCCATTGAATTTCTAA+AGG - chr1_1:62265265-62265284 None:intergenic 40.0%
!!! GGATTCTAGCTAGCGTTTTT+TGG + chr1_1:62265963-62265982 Msa0034330:intron 40.0%
AGATGCACTCCATTTGTAGT+TGG - chr1_1:62265992-62266011 None:intergenic 40.0%
GCTAACTTCCTAGACAATGA+TGG + chr1_1:62266251-62266270 Msa0034330:intron 40.0%
CTGCAAAACCATCATTGTCT+AGG - chr1_1:62266262-62266281 None:intergenic 40.0%
GTCGTGTTAATTTCACGAAC+CGG - chr1_1:62266315-62266334 None:intergenic 40.0%
TTGATGTTAAGCCGAAGATG+TGG + chr1_1:62266349-62266368 Msa0034330:CDS 40.0%
!! GATATTTTAGGGGCGCAATA+TGG - chr1_1:62266581-62266600 None:intergenic 40.0%
AGGAAAGTTTGCGTGGAAAC+TGG - chr1_1:62263308-62263327 None:intergenic 45.0%
AGAGAAGAGAAGGGTGGAAA+TGG - chr1_1:62263359-62263378 None:intergenic 45.0%
AGGGTGTGAAATGAAAAGGG+GGG - chr1_1:62263384-62263403 None:intergenic 45.0%
! GAGGGTGTGAAATGAAAAGG+GGG - chr1_1:62263385-62263404 None:intergenic 45.0%
! GGTGAGGGTGTGAAATGAAA+AGG - chr1_1:62263388-62263407 None:intergenic 45.0%
! AACGAACATGACTTGGGTGA+GGG - chr1_1:62263403-62263422 None:intergenic 45.0%
! TAACGAACATGACTTGGGTG+AGG - chr1_1:62263404-62263423 None:intergenic 45.0%
! TTGGAAGCGCGATACAAAGA+AGG - chr1_1:62263442-62263461 None:intergenic 45.0%
! TAAGGTGGTTGGGTTGTGTT+TGG - chr1_1:62263461-62263480 None:intergenic 45.0%
!! ATCATCGGTGTCGTTTAAGG+TGG - chr1_1:62263476-62263495 None:intergenic 45.0%
AACGACACCGATGATGATTC+TGG + chr1_1:62263481-62263500 Msa0034330:five_prime_UTR 45.0%
ACGACACCGATGATGATTCT+GGG + chr1_1:62263482-62263501 Msa0034330:five_prime_UTR 45.0%
! TCTGGGACTTTATTGGTGAC+AGG + chr1_1:62263499-62263518 Msa0034330:five_prime_UTR 45.0%
! CTGGGACTTTATTGGTGACA+GGG + chr1_1:62263500-62263519 Msa0034330:five_prime_UTR 45.0%
! TGGGACTTTATTGGTGACAG+GGG + chr1_1:62263501-62263520 Msa0034330:five_prime_UTR 45.0%
! TCAGAGTCGTTGGTTGAAGA+TGG + chr1_1:62263541-62263560 Msa0034330:five_prime_UTR 45.0%
! CAGAGTCGTTGGTTGAAGAT+GGG + chr1_1:62263542-62263561 Msa0034330:five_prime_UTR 45.0%
! AGAGTCGTTGGTTGAAGATG+GGG + chr1_1:62263543-62263562 Msa0034330:five_prime_UTR 45.0%
! AGGTTGGCTGATTTCATTCC+TGG + chr1_1:62263679-62263698 Msa0034330:five_prime_UTR 45.0%
AATTTACTGAGGGCAAGACC+AGG - chr1_1:62263700-62263719 None:intergenic 45.0%
CTGCAAGAGTCGAGCAAAAT+TGG - chr1_1:62263737-62263756 None:intergenic 45.0%
! CAATTTTGCTCGACTCTTGC+AGG + chr1_1:62263735-62263754 Msa0034330:five_prime_UTR 45.0%
TAAACGAAGTGGCAAGCACA+AGG - chr1_1:62263982-62264001 None:intergenic 45.0%
TCACGAGGAACTGTGCTATA+AGG + chr1_1:62264096-62264115 Msa0034330:five_prime_UTR 45.0%
! AATGACCTTGTTGGTGGATG+AGG - chr1_1:62264280-62264299 None:intergenic 45.0%
TAGGGACCTTCCTAATACAG+TGG + chr1_1:62264356-62264375 Msa0034330:intron 45.0%
ATGCAGCCACTGTATTAGGA+AGG - chr1_1:62264365-62264384 None:intergenic 45.0%
ATCAAATACGGTCAGTCCGT+TGG + chr1_1:62264620-62264639 Msa0034330:intron 45.0%
ACTCTAGTATGAGGTGGTTG+TGG - chr1_1:62264735-62264754 None:intergenic 45.0%
AAAACATAGGCGTCCATGAG+TGG + chr1_1:62264829-62264848 Msa0034330:intron 45.0%
!! AACTGTGGGAGTACTGATCT+TGG + chr1_1:62265006-62265025 Msa0034330:intron 45.0%
TCCAGGCAATACACATCAGT+TGG + chr1_1:62265040-62265059 Msa0034330:intron 45.0%
ACCAACTGATGTGTATTGCC+TGG - chr1_1:62265044-62265063 None:intergenic 45.0%
CCTTGCAGCAAAACCATACT+TGG - chr1_1:62265190-62265209 None:intergenic 45.0%
!! CCAAGTATGGTTTTGCTGCA+AGG + chr1_1:62265187-62265206 Msa0034330:intron 45.0%
ACAGATTGGAGAGCAGAACT+TGG + chr1_1:62265396-62265415 Msa0034330:intron 45.0%
GAGAGCAGAACTTGGCATTT+GGG + chr1_1:62265404-62265423 Msa0034330:five_prime_UTR 45.0%
GAATTGGAGACTCTTCCATC+TGG + chr1_1:62265469-62265488 Msa0034330:five_prime_UTR 45.0%
ATGTCACGCTTCATACCAGA+TGG - chr1_1:62265487-62265506 None:intergenic 45.0%
! GGGGATTTTCAGCTCTTTGA+AGG + chr1_1:62265526-62265545 Msa0034330:CDS 45.0%
! ACCATTTCCTATGCTGGTCT+TGG + chr1_1:62265812-62265831 Msa0034330:intron 45.0%
TCCAAGACCAGCATAGGAAA+TGG - chr1_1:62265816-62265835 None:intergenic 45.0%
! GTGTTTTCCAAGACCAGCAT+AGG - chr1_1:62265822-62265841 None:intergenic 45.0%
! GTTTTGCAGACTTTCAGCGA+TGG + chr1_1:62266273-62266292 Msa0034330:intron 45.0%
TTTCAGCGATGGAAGTTGTG+AGG + chr1_1:62266284-62266303 Msa0034330:CDS 45.0%
CTTCACCCCTTACGGATTTA+AGG - chr1_1:62266425-62266444 None:intergenic 45.0%
TTTCAGAGCTTCACCCCTTA+CGG - chr1_1:62266433-62266452 None:intergenic 45.0%
CTTAGGTAAAGCTGCAAGCT+TGG + chr1_1:62266555-62266574 Msa0034330:three_prime_UTR 45.0%
AGGGAGTAGGAAAGTTTGCG+TGG - chr1_1:62263315-62263334 None:intergenic 50.0%
AGAAGGGTGGAAATGGAAGC+CGG - chr1_1:62263352-62263371 None:intergenic 50.0%
!! CGGTGTCGTTTAAGGTGGTT+GGG - chr1_1:62263471-62263490 None:intergenic 50.0%
!! TCGGTGTCGTTTAAGGTGGT+TGG - chr1_1:62263472-62263491 None:intergenic 50.0%
TTCCTCCTCATCCACCAACA+AGG + chr1_1:62264272-62264291 Msa0034330:intron 50.0%
GGCGTCTATTAGGGTAATGC+AGG - chr1_1:62264671-62264690 None:intergenic 50.0%
GTGGTTGTGGGCGTCTATTA+GGG - chr1_1:62264680-62264699 None:intergenic 50.0%
AGTGGTTGTGGGCGTCTATT+AGG - chr1_1:62264681-62264700 None:intergenic 50.0%
TAATAGACGCCCACAACCAC+TGG + chr1_1:62264680-62264699 Msa0034330:intron 50.0%
CTAGTATGAGGTGGTTGTGG+TGG - chr1_1:62264732-62264751 None:intergenic 50.0%
ATGTATGCATCAGTCGTGGG+TGG + chr1_1:62264955-62264974 Msa0034330:intron 50.0%
GGAGAGCAGAACTTGGCATT+TGG + chr1_1:62265403-62265422 Msa0034330:five_prime_UTR 50.0%
TGGAAGTTGTGAGGACTCTC+CGG + chr1_1:62266293-62266312 Msa0034330:CDS 50.0%
TCTACCCTCTATCAGCCCAA+CGG - chr1_1:62266379-62266398 None:intergenic 50.0%
! GGTGATGGTTGAGAGGGAGT+AGG - chr1_1:62263328-62263347 None:intergenic 55.0%
TCCCTCTCAACCATCACCAC+CGG + chr1_1:62263330-62263349 Msa0034330:five_prime_UTR 55.0%
GAAATGGAAGCCGGTGGTGA+TGG - chr1_1:62263343-62263362 None:intergenic 55.0%
AGGGGGGTGAGAGAAGAGAA+GGG - chr1_1:62263368-62263387 None:intergenic 55.0%
AAGGGGGGTGAGAGAAGAGA+AGG - chr1_1:62263369-62263388 None:intergenic 55.0%
! GACCTTGTTGGTGGATGAGG+AGG - chr1_1:62264277-62264296 None:intergenic 55.0%
ATACGGTCAGTCCGTTGGAC+CGG + chr1_1:62264625-62264644 Msa0034330:intron 55.0%
TATGCATCAGTCGTGGGTGG+TGG + chr1_1:62264958-62264977 Msa0034330:intron 55.0%
! CTGGTTTGCGCGAGTTTGCA+TGG - chr1_1:62265627-62265646 None:intergenic 55.0%
CCAACGGGCAACCACATCTT+CGG - chr1_1:62266363-62266382 None:intergenic 55.0%
CGAAGATGTGGTTGCCCGTT+GGG + chr1_1:62266361-62266380 Msa0034330:CDS 55.0%
TTGCCCGTTGGGCTGATAGA+GGG + chr1_1:62266372-62266391 Msa0034330:CDS 55.0%
CTACCCTCTATCAGCCCAAC+GGG - chr1_1:62266378-62266397 None:intergenic 55.0%
!! GCCGGTGGTGATGGTTGAGA+GGG - chr1_1:62263334-62263353 None:intergenic 60.0%
!! AGCCGGTGGTGATGGTTGAG+AGG - chr1_1:62263335-62263354 None:intergenic 60.0%
AGGGTGGAAATGGAAGCCGG+TGG - chr1_1:62263349-62263368 None:intergenic 60.0%
GGGGTGAGAGAAGAGAAGGG+TGG - chr1_1:62263365-62263384 None:intergenic 60.0%
GACACAACACGGCTCTCACG+AGG + chr1_1:62264081-62264100 Msa0034330:five_prime_UTR 60.0%
GTGGCTACGCCAGTGGTTGT+GGG - chr1_1:62264692-62264711 None:intergenic 60.0%
CCGAAGATGTGGTTGCCCGT+TGG + chr1_1:62266360-62266379 Msa0034330:CDS 60.0%
GTTGCCCGTTGGGCTGATAG+AGG + chr1_1:62266371-62266390 Msa0034330:CDS 60.0%
GGTGGCTACGCCAGTGGTTG+TGG - chr1_1:62264693-62264712 None:intergenic 65.0%
GGTTGTGGTGGCTACGCCAG+TGG - chr1_1:62264699-62264718 None:intergenic 65.0%
GGCGTAGCCACCACAACCAC+TGG + chr1_1:62264701-62264720 Msa0034330:intron 65.0%
GGCTACGCCAGTGGTTGTGG+TGG - chr1_1:62264690-62264709 None:intergenic 65.0%
GGTGGCTACGCCAGTGGTTG+TGG - chr1_1:62264693-62264712 None:intergenic 65.0%
GGTTGTGGTGGCTACGCCAG+TGG - chr1_1:62264699-62264718 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 62263146 62266619 62263146 ID=Msa0034330;Name=Msa0034330
chr1_1 mRNA 62263146 62266619 62263146 ID=Msa0034330-mRNA-1;Parent=Msa0034330;Name=Msa0034330-mRNA-1;_AED=0.04;_eAED=0.04;_QI=785|0.33|0.75|0.75|1|1|4|128|94
chr1_1 exon 62263146 62263756 62263146 ID=Msa0034330-mRNA-1:exon:19584;Parent=Msa0034330-mRNA-1
chr1_1 exon 62264037 62264117 62264037 ID=Msa0034330-mRNA-1:exon:19585;Parent=Msa0034330-mRNA-1
chr1_1 exon 62265400 62265567 62265400 ID=Msa0034330-mRNA-1:exon:19586;Parent=Msa0034330-mRNA-1
chr1_1 exon 62266282 62266619 62266282 ID=Msa0034330-mRNA-1:exon:19587;Parent=Msa0034330-mRNA-1
chr1_1 five_prime_UTR 62263146 62263756 62263146 ID=Msa0034330-mRNA-1:five_prime_utr;Parent=Msa0034330-mRNA-1
chr1_1 five_prime_UTR 62264037 62264117 62264037 ID=Msa0034330-mRNA-1:five_prime_utr;Parent=Msa0034330-mRNA-1
chr1_1 five_prime_UTR 62265400 62265492 62265400 ID=Msa0034330-mRNA-1:five_prime_utr;Parent=Msa0034330-mRNA-1
chr1_1 CDS 62265493 62265567 62265493 ID=Msa0034330-mRNA-1:cds;Parent=Msa0034330-mRNA-1
chr1_1 CDS 62266282 62266491 62266282 ID=Msa0034330-mRNA-1:cds;Parent=Msa0034330-mRNA-1
chr1_1 three_prime_UTR 62266492 62266619 62266492 ID=Msa0034330-mRNA-1:three_prime_utr;Parent=Msa0034330-mRNA-1
Gene Sequence

>Msa0034330

ATGAAGCGTGACATAGACTTCAAGATGATTGAAGGGGATTTTCAGCTCTTTGAAGGAAAATGGTCTATTTTGCAGACTTTCAGCGATGGAAGTTGTGAGGACTCTCCGGTTCGTGAAATTAACACGACACTTTCATACATTGTTGATGTTAAGCCGAAGATGTGGTTGCCCGTTGGGCTGATAGAGGGTAGACTTTGCAAAGAGATAAAAAAGAACCTTAAATCCGTAAGGGGTGAAGCTCTGAAAGCTACTGACAGAACTGTTAATGCAAATCAATTTGAATGA

Protein sequence

>Msa0034330

MKRDIDFKMIEGDFQLFEGKWSILQTFSDGSCEDSPVREINTTLSYIVDVKPKMWLPVGLIEGRLCKEIKKNLKSVRGEALKATDRTVNANQFE*