AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1428790


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1428790 MtrunA17_Chr1g0210971 71.610 236 18 4 1 205 145 362 4.93e-107 313
Msa1428790 MtrunA17_Chr4g0004721 35.200 125 77 1 53 173 188 312 5.73e-16 75.1
Msa1428790 MtrunA17_Chr4g0000511 30.348 201 113 6 9 182 215 415 5.74e-16 76.3
Msa1428790 MtrunA17_Chr8g0351111 34.454 119 74 1 59 173 203 321 1.31e-15 74.3
Msa1428790 MtrunA17_Chr4g0004711 34.400 125 78 1 53 173 187 311 2.18e-15 73.6
Msa1428790 MtrunA17_Chr4g0004681 34.400 125 78 1 53 173 184 308 3.32e-15 73.2
Msa1428790 MtrunA17_Chr4g0004741 36.111 108 69 0 53 160 187 294 3.79e-15 72.8
Msa1428790 MtrunA17_Chr8g0351141 34.579 107 66 1 71 173 218 324 5.74e-14 69.7
Msa1428790 MtrunA17_Chr2g0331641 37.895 95 59 0 71 165 206 300 1.76e-13 68.2
Msa1428790 MtrunA17_Chr8g0351121 34.694 98 64 0 71 168 251 348 2.90e-13 67.8
Msa1428790 MtrunA17_Chr1g0208141 32.335 167 94 5 9 158 182 346 9.10e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1428790 AT1G68010.1 63.559 236 37 4 1 205 145 362 2.44e-95 283
Msa1428790 AT1G68010.2 63.291 237 37 5 1 205 145 363 1.47e-93 279
Msa1428790 AT1G68010.3 67.150 207 37 3 1 176 145 351 6.03e-89 266
Msa1428790 AT1G79870.1 33.628 113 75 0 53 165 187 299 8.65e-15 72.4
Msa1428790 AT1G79870.2 33.628 113 75 0 53 165 168 280 9.44e-15 72.0
Msa1428790 AT1G17745.1 30.846 201 112 5 9 182 209 409 1.03e-14 72.8
Msa1428790 AT4G34200.1 30.846 201 112 6 9 182 188 388 1.46e-14 72.4
Msa1428790 AT2G45630.2 37.383 107 64 1 59 165 218 321 1.56e-14 71.6
Msa1428790 AT1G17745.2 32.386 176 103 4 23 182 261 436 1.83e-14 72.4
Msa1428790 AT1G12550.1 34.454 119 74 1 59 173 201 319 4.73e-14 70.1
Msa1428790 AT1G72190.1 27.972 143 96 4 22 162 217 354 4.23e-11 62.0

Find 76 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCATATGGTGCTTTCTTAA+AGG 0.276108 tig0026414:+1982 Msa1428790:intron
TGATCTTGCCCTGTATTATA+AGG 0.316385 tig0026414:-2973 None:intergenic
GACAAACAGTTTGGTGTTAT+CGG 0.366099 tig0026414:+1263 Msa1428790:CDS
GAGGCAAAGCTTTCAGTATA+TGG 0.377264 tig0026414:+588 Msa1428790:five_prime_UTR
AACTCTAACCTTCTTCATCT+TGG 0.389875 tig0026414:-2231 None:intergenic
TTCTCTGCTTTGAGCAAAGC+AGG 0.391693 tig0026414:+566 Msa1428790:five_prime_UTR
GATTAGTCTTCATCCTATCT+TGG 0.399037 tig0026414:+2169 Msa1428790:intron
CAGTATGGTTTGATGCCAAT+AGG 0.402824 tig0026414:+3004 Msa1428790:CDS
GTTATCGGAGCTGGCCGTAT+TGG 0.403616 tig0026414:+1278 Msa1428790:CDS
GTCAATGCTGCAACACAATA+TGG 0.406221 tig0026414:+632 Msa1428790:five_prime_UTR
AAGAAATGGCTCCACCCTAT+TGG 0.407299 tig0026414:-3019 None:intergenic
AAGATCAAGGCTACCCAGTA+TGG 0.414468 tig0026414:+2989 Msa1428790:CDS
CTATTGGCATCAAACCATAC+TGG 0.422550 tig0026414:-3003 None:intergenic
CGTAGGCCTTGATGTGTTTG+AGG 0.424117 tig0026414:+2429 Msa1428790:CDS
TGCTCAAGGGACAAACAGTT+TGG 0.426349 tig0026414:+1254 Msa1428790:CDS
ATCCCTATGTCTCTCCATCT+TGG 0.432843 tig0026414:+2887 Msa1428790:CDS
TTGAGCATTTCATCAAGAAA+TGG 0.442758 tig0026414:-3033 None:intergenic
TGACTTTGGCAGCTGCTAGA+AGG 0.446003 tig0026414:+1008 Msa1428790:five_prime_UTR
GATGAGCCTCCTTATAATAC+AGG 0.450379 tig0026414:+2964 Msa1428790:intron
GCTTGCAGCTTCACTGACTT+TGG 0.451429 tig0026414:+994 Msa1428790:five_prime_UTR
ACAATGCTTGGGCATGCAGC+TGG 0.459559 tig0026414:-3059 None:intergenic
GGTGCTTTCTTAAAGGCAAA+TGG 0.460883 tig0026414:+1989 Msa1428790:CDS
TTCTTCAATTCTGCAAGTCC+AGG 0.463530 tig0026414:-2556 None:intergenic
AGTGCAACTTCATCAATAAC+AGG 0.463873 tig0026414:-2373 None:intergenic
AAACACCAGTAACTTGGAAA+AGG 0.465743 tig0026414:+2014 Msa1428790:CDS
CAGTTTGGTGTTATCGGAGC+TGG 0.468257 tig0026414:+1269 Msa1428790:CDS
CTTGTTGACGAGGTGGTAAG+TGG 0.472748 tig0026414:-2198 None:intergenic
AGTATGGTTTGATGCCAATA+GGG 0.473886 tig0026414:+3005 Msa1428790:CDS
GCAAGTCCAGGTTTCATGTA+GGG 0.476452 tig0026414:-2544 None:intergenic
ACACATTGCTTCTGCTTCCA+AGG 0.479271 tig0026414:+2594 Msa1428790:CDS
AATCCAAGATGGAGAGACAT+AGG 0.486176 tig0026414:-2890 None:intergenic
TTGGAAAAGGGCAGCATCCA+TGG 0.493217 tig0026414:+2027 Msa1428790:CDS
ATGGTGAAACACCAGTAACT+TGG 0.493816 tig0026414:+2008 Msa1428790:CDS
AGCTTTCAGTATATGGCTGT+TGG 0.504298 tig0026414:+595 Msa1428790:five_prime_UTR
CGAGTCTTTCCTTGTTGACG+AGG 0.512210 tig0026414:-2208 None:intergenic
CCCTTGGAGAACCTCGTCCA+TGG 0.515695 tig0026414:-2044 None:intergenic
TATAATACAGGGCAAGATCA+AGG 0.526170 tig0026414:+2976 Msa1428790:CDS
GCAGATGAGTTCATGAGGGC+AGG 0.528261 tig0026414:+1040 Msa1428790:exon
GCAGTGGACTCGTGAGGGAA+TGG 0.533885 tig0026414:+2834 Msa1428790:intron
AACACCAGTAACTTGGAAAA+GGG 0.538959 tig0026414:+2015 Msa1428790:CDS
TTGCATAAGCTGATCCAATA+CGG 0.539584 tig0026414:-1292 None:intergenic
TCAAGGCCTACGCGAAACAT+TGG 0.540440 tig0026414:-2418 None:intergenic
TGCAAGTCCAGGTTTCATGT+AGG 0.542560 tig0026414:-2545 None:intergenic
GTCTTTCCTTGTTGACGAGG+TGG 0.560436 tig0026414:-2205 None:intergenic
GCTAGCAGCTCTAAATGTGC+TGG 0.561333 tig0026414:+2861 Msa1428790:CDS
CAATTACCTCAAACACATCA+AGG 0.566746 tig0026414:-2435 None:intergenic
GGGCAGGATTATATGATGGC+TGG 0.567472 tig0026414:+1056 Msa1428790:CDS
TATTGATGAAGTTGCACTTG+TGG 0.567753 tig0026414:+2378 Msa1428790:CDS
CACTTACCACCTCGTCAACA+AGG 0.569943 tig0026414:+2199 Msa1428790:CDS
ATTCTTATAAACTGCAGTAG+AGG 0.572235 tig0026414:+2349 Msa1428790:CDS
ACGTAGGAATGAATCCAAGA+TGG 0.579780 tig0026414:-2901 None:intergenic
ATTTGTTGGAAACTTGCTCA+AGG 0.580236 tig0026414:+1240 Msa1428790:CDS
ATGAGGGCAGGATTATATGA+TGG 0.580751 tig0026414:+1052 Msa1428790:CDS
ACACAATATGGTGTTGCTGT+TGG 0.582960 tig0026414:+644 Msa1428790:five_prime_UTR
ATCAGCTTATGCAAGAATGA+TGG 0.584719 tig0026414:+1301 Msa1428790:CDS
GGGAGTTCTCACAGAGACTA+CGG 0.589946 tig0026414:+967 Msa1428790:intron
TTTGTTGGAAACTTGCTCAA+GGG 0.594105 tig0026414:+1241 Msa1428790:CDS
GATGAGCCCTACATGAAACC+TGG 0.594414 tig0026414:+2538 Msa1428790:CDS
AAGACTCGCCAAGATGAAGA+AGG 0.601821 tig0026414:+2223 Msa1428790:CDS
TCTTGCCCTGTATTATAAGG+AGG 0.603690 tig0026414:-2970 None:intergenic
TATTGGCATCAAACCATACT+GGG 0.608430 tig0026414:-3002 None:intergenic
TTGAGGCAGATGAGTTCATG+AGG 0.619999 tig0026414:+1035 Msa1428790:exon
ATCCAAGATGGAGAGACATA+GGG 0.621028 tig0026414:-2889 None:intergenic
AAGGGCAGCATCCATGGACG+AGG 0.621564 tig0026414:+2033 Msa1428790:CDS
GAAAATCCAATGTTTCGCGT+AGG 0.638637 tig0026414:+2412 Msa1428790:CDS
AGCTGCTAGAAGGATAGTTG+AGG 0.641144 tig0026414:+1018 Msa1428790:five_prime_UTR
ATGGTTTGATGCCAATAGGG+TGG 0.649631 tig0026414:+3008 Msa1428790:CDS
TGAGGCAGATGAGTTCATGA+GGG 0.651617 tig0026414:+1036 Msa1428790:exon
ATGAGCCTCCTTATAATACA+GGG 0.655563 tig0026414:+2965 Msa1428790:intron
TCTGCTTTGAGCAAAGCAGG+AGG 0.664158 tig0026414:+569 Msa1428790:five_prime_UTR
ATGCTTGGGCATGCAGCTGG+AGG 0.674932 tig0026414:-3056 None:intergenic
GTGTTTGCAGTGGACTCGTG+AGG 0.684941 tig0026414:+2828 Msa1428790:intron
TGTTTGCAGTGGACTCGTGA+GGG 0.684969 tig0026414:+2829 Msa1428790:intron
AGCAATGTGTGGTACTACAA+CGG 0.690341 tig0026414:-2581 None:intergenic
TTTGCAGCTGACTGAAGACG+GGG 0.703592 tig0026414:+533 Msa1428790:intron
TTGGAAGCAGAAGCAATGTG+TGG 0.717012 tig0026414:-2592 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTTATTTTTAAATTAT+AGG + tig0026414:163-182 Msa1428790:intron 0.0%
!!! TTTTAAATTATAGGTTTTTT+TGG + tig0026414:172-191 Msa1428790:intron 10.0%
!!! CTAAATAACTATTTTTTTAT+TGG + tig0026414:259-278 Msa1428790:intron 10.0%
!!! AGTTTAAATTTTAACATAAG+AGG + tig0026414:437-456 Msa1428790:intron 15.0%
!!! ATTTACATTTTAAATGTATG+TGG + tig0026414:725-744 Msa1428790:intron 15.0%
!! TCATCATAAACTAAATTATT+AGG - tig0026414:2138-2157 None:intergenic 15.0%
!!! ATCATGTGATTTTTTTTATT+AGG + tig0026414:2516-2535 Msa1428790:intron 15.0%
!! TTAGAATTAAATTAAGTACA+GGG + tig0026414:2676-2695 Msa1428790:intron 15.0%
!!! TATGTGTTTTTTTTACTTCT+GGG + tig0026414:198-217 Msa1428790:intron 20.0%
!! AATCTTAAGTAAAACAAGAA+AGG - tig0026414:1107-1126 None:intergenic 20.0%
!!! AGTTTTGATTTTGTTTTATC+TGG + tig0026414:1214-1233 Msa1428790:intron 20.0%
!! TAGTTGCTAATAAAATTACT+TGG + tig0026414:1415-1434 Msa1428790:intron 20.0%
!! CAAAAATTAAAACGGAAAAA+CGG + tig0026414:1457-1476 Msa1428790:intron 20.0%
!!! ATTCTAAGTTAACAGATTTT+TGG - tig0026414:1729-1748 None:intergenic 20.0%
!! ATCCATTTAAACAAATCATA+GGG - tig0026414:1913-1932 None:intergenic 20.0%
!! TATCCATTTAAACAAATCAT+AGG - tig0026414:1914-1933 None:intergenic 20.0%
!! ATTATTAGGAATGATCAAAT+GGG - tig0026414:2124-2143 None:intergenic 20.0%
!! AATTATTAGGAATGATCAAA+TGG - tig0026414:2125-2144 None:intergenic 20.0%
!! ATAACTAAAATTGATTACCT+TGG - tig0026414:2614-2633 None:intergenic 20.0%
!! CTTAGAATTAAATTAAGTAC+AGG + tig0026414:2675-2694 Msa1428790:intron 20.0%
!!! TGTGAAAAGAATCTTTTTTT+AGG - tig0026414:2768-2787 None:intergenic 20.0%
!!! GTATGTGTTTTTTTTACTTC+TGG + tig0026414:197-216 Msa1428790:intron 25.0%
!!! ATGTGTTTTTTTTACTTCTG+GGG + tig0026414:199-218 Msa1428790:intron 25.0%
! ATATTGTGAATCAAGAATAG+AGG + tig0026414:364-383 Msa1428790:intron 25.0%
! TATTGTGAATCAAGAATAGA+GGG + tig0026414:365-384 Msa1428790:intron 25.0%
!! ATGTACTAAAGTGTTTATCA+AGG + tig0026414:409-428 Msa1428790:intron 25.0%
! TTTAACATAAAAGCAACTCT+CGG + tig0026414:476-495 Msa1428790:intron 25.0%
! TTCATATCATTCATTGTGTT+TGG + tig0026414:942-961 Msa1428790:intron 25.0%
!!! GTTTATTTTTCATACAGATG+AGG - tig0026414:1085-1104 None:intergenic 25.0%
!! TGACTTGGCAAAAATTAAAA+CGG + tig0026414:1449-1468 Msa1428790:intron 25.0%
! TAAAAAAAAAGAGAAGCTAG+TGG + tig0026414:1632-1651 Msa1428790:intron 25.0%
! ATTGTCACGATATTCAAATT+TGG + tig0026414:1682-1701 Msa1428790:intron 25.0%
!!! TAAGTTAACAGATTTTTGGA+AGG - tig0026414:1725-1744 None:intergenic 25.0%
! TAATGATATATTCTTATCGC+AGG + tig0026414:2321-2340 Msa1428790:intron 25.0%
!!! GAAAAGAATCTTTTTTTAGG+TGG - tig0026414:2765-2784 None:intergenic 25.0%
! AATTTACATTGATCAAACGT+AGG - tig0026414:2920-2939 None:intergenic 25.0%
GAAGATATCATTGCTTTGAT+TGG + tig0026414:22-41 Msa1428790:five_prime_UTR 30.0%
ATAAGTGTGAATGGAGTTAT+TGG + tig0026414:47-66 Msa1428790:five_prime_UTR 30.0%
ATTGTGAATCAAGAATAGAG+GGG + tig0026414:366-385 Msa1428790:intron 30.0%
TTAACATAAAAGCAACTCTC+GGG + tig0026414:477-496 Msa1428790:intron 30.0%
TGTTAGTGTCAAAATGATAC+AGG - tig0026414:698-717 None:intergenic 30.0%
TCAAAGTTATCATGTATGCT+TGG + tig0026414:772-791 Msa1428790:intron 30.0%
ATGTATATGTGATGCTGAAT+CGG + tig0026414:841-860 Msa1428790:intron 30.0%
!! AATAGTGATTAGTCTTGATG+AGG + tig0026414:897-916 Msa1428790:intron 30.0%
!! GGAAGTTATTTGTTATACCT+TGG + tig0026414:918-937 Msa1428790:intron 30.0%
CAATGAATGATATGAAACCA+AGG - tig0026414:938-957 None:intergenic 30.0%
TATCATTCATTGTGTTTGGT+AGG + tig0026414:946-965 Msa1428790:intron 30.0%
ATCATTCATTGTGTTTGGTA+GGG + tig0026414:947-966 Msa1428790:intron 30.0%
CAATGCAAAACTGAAATGTA+TGG - tig0026414:1335-1354 None:intergenic 30.0%
!! TTGGTTTTTGAATACTGACT+TGG + tig0026414:1434-1453 Msa1428790:intron 30.0%
!!! ACTTTTCTAGTCTTGTAGAT+TGG - tig0026414:1875-1894 None:intergenic 30.0%
!! GTCCCTATGATTTGTTTAAA+TGG + tig0026414:1908-1927 Msa1428790:intron 30.0%
! TTTTTCCTTATTGCAGCATA+TGG + tig0026414:1968-1987 Msa1428790:intron 30.0%
!!! TAAGTGGTTTTATCCAAGAT+AGG - tig0026414:2185-2204 None:intergenic 30.0%
ATTCTTATAAACTGCAGTAG+AGG + tig0026414:2349-2368 Msa1428790:CDS 30.0%
AATCACATGATGTCTTGAAA+AGG - tig0026414:2507-2526 None:intergenic 30.0%
!! TGTTAGTGGTTAGTTTACTA+GGG - tig0026414:2733-2752 None:intergenic 30.0%
!! ATGTTAGTGGTTAGTTTACT+AGG - tig0026414:2734-2753 None:intergenic 30.0%
! GCTCATCAGTTTTACAAAAT+AGG - tig0026414:2951-2970 None:intergenic 30.0%
TTGAGCATTTCATCAAGAAA+TGG - tig0026414:3036-3055 None:intergenic 30.0%
! CTTTTGCATTAACAATGCTT+GGG - tig0026414:3073-3092 None:intergenic 30.0%
! TGATTGGTGATAAGTGTGAA+TGG + tig0026414:38-57 Msa1428790:five_prime_UTR 35.0%
TTGTGAATCAAGAATAGAGG+GGG + tig0026414:367-386 Msa1428790:intron 35.0%
! CTAAAGTGTTTATCAAGGAG+AGG + tig0026414:414-433 Msa1428790:intron 35.0%
ATGAAAGAGAAAGCTTACAG+AGG - tig0026414:674-693 None:intergenic 35.0%
AGTTATCATGTATGCTTGGA+TGG + tig0026414:776-795 Msa1428790:intron 35.0%
GTTATCATGTATGCTTGGAT+GGG + tig0026414:777-796 Msa1428790:intron 35.0%
TTATCATGTATGCTTGGATG+GGG + tig0026414:778-797 Msa1428790:intron 35.0%
TGCTGAATCGGTTGTAATTA+TGG + tig0026414:853-872 Msa1428790:intron 35.0%
! GTTTTATCTGGCAGATTTGT+TGG + tig0026414:1226-1245 Msa1428790:intron 35.0%
! ATTTGTTGGAAACTTGCTCA+AGG + tig0026414:1240-1259 Msa1428790:CDS 35.0%
! TTTGTTGGAAACTTGCTCAA+GGG + tig0026414:1241-1260 Msa1428790:CDS 35.0%
!! GACAAACAGTTTGGTGTTAT+CGG + tig0026414:1263-1282 Msa1428790:CDS 35.0%
TTGCATAAGCTGATCCAATA+CGG - tig0026414:1295-1314 None:intergenic 35.0%
ATCAGCTTATGCAAGAATGA+TGG + tig0026414:1301-1320 Msa1428790:CDS 35.0%
CAATCAAGTGAACCTGAAAT+GGG - tig0026414:1371-1390 None:intergenic 35.0%
TCAATCAAGTGAACCTGAAA+TGG - tig0026414:1372-1391 None:intergenic 35.0%
ATCCTACTTGAAAGTTCTCT+AGG + tig0026414:1485-1504 Msa1428790:intron 35.0%
CTCTAGGTCACATAATATCT+AGG + tig0026414:1501-1520 Msa1428790:intron 35.0%
TTCAAATTTGGCCAAGTTAC+TGG + tig0026414:1694-1713 Msa1428790:intron 35.0%
! TGATTCTTTTCTGCTGTATC+AGG + tig0026414:1809-1828 Msa1428790:intron 35.0%
AGACTAGAAAAGTTTGTCAC+AGG + tig0026414:1882-1901 Msa1428790:intron 35.0%
AGCATATGGTGCTTTCTTAA+AGG + tig0026414:1982-2001 Msa1428790:intron 35.0%
AAACACCAGTAACTTGGAAA+AGG + tig0026414:2014-2033 Msa1428790:CDS 35.0%
AACACCAGTAACTTGGAAAA+GGG + tig0026414:2015-2034 Msa1428790:CDS 35.0%
ATTCTTACTATATCTGCCCT+TGG - tig0026414:2063-2082 None:intergenic 35.0%
!! GATTAGTCTTCATCCTATCT+TGG + tig0026414:2169-2188 Msa1428790:intron 35.0%
AACTCTAACCTTCTTCATCT+TGG - tig0026414:2234-2253 None:intergenic 35.0%
ATGAAGAAGGTTAGAGTTCA+AGG + tig0026414:2236-2255 Msa1428790:intron 35.0%
TGAAGAAGGTTAGAGTTCAA+GGG + tig0026414:2237-2256 Msa1428790:intron 35.0%
AAATTACTTATGGCATCACG+TGG + tig0026414:2279-2298 Msa1428790:intron 35.0%
AGTGCAACTTCATCAATAAC+AGG - tig0026414:2376-2395 None:intergenic 35.0%
TATTGATGAAGTTGCACTTG+TGG + tig0026414:2378-2397 Msa1428790:CDS 35.0%
CAATTACCTCAAACACATCA+AGG - tig0026414:2438-2457 None:intergenic 35.0%
! AATTGAACCTTGTCTGCTTT+TGG + tig0026414:2453-2472 Msa1428790:intron 35.0%
TTGTTATCCAAAAGCAGACA+AGG - tig0026414:2463-2482 None:intergenic 35.0%
ATGAGCCTCCTTATAATACA+GGG + tig0026414:2965-2984 Msa1428790:intron 35.0%
TGATCTTGCCCTGTATTATA+AGG - tig0026414:2976-2995 None:intergenic 35.0%
TATAATACAGGGCAAGATCA+AGG + tig0026414:2976-2995 Msa1428790:CDS 35.0%
TATTGGCATCAAACCATACT+GGG - tig0026414:3005-3024 None:intergenic 35.0%
AGTATGGTTTGATGCCAATA+GGG + tig0026414:3005-3024 Msa1428790:CDS 35.0%
! GCTTTTGCATTAACAATGCT+TGG - tig0026414:3074-3093 None:intergenic 35.0%
TGTGAATGGAGTTATTGGAC+AGG + tig0026414:52-71 Msa1428790:five_prime_UTR 40.0%
GAGGCAAAGCTTTCAGTATA+TGG + tig0026414:588-607 Msa1428790:five_prime_UTR 40.0%
AGCTTTCAGTATATGGCTGT+TGG + tig0026414:595-614 Msa1428790:five_prime_UTR 40.0%
GTCAATGCTGCAACACAATA+TGG + tig0026414:632-651 Msa1428790:five_prime_UTR 40.0%
!! ACACAATATGGTGTTGCTGT+TGG + tig0026414:644-663 Msa1428790:five_prime_UTR 40.0%
GACTTGTACTGCTAAACCTT+CGG + tig0026414:810-829 Msa1428790:intron 40.0%
ACTTGTACTGCTAAACCTTC+GGG + tig0026414:811-830 Msa1428790:intron 40.0%
ATATACATGCATGTACCCGA+AGG - tig0026414:829-848 None:intergenic 40.0%
ATGAGGGCAGGATTATATGA+TGG + tig0026414:1052-1071 Msa1428790:CDS 40.0%
TGTGCTATACACTCTTCTGA+AGG + tig0026414:1181-1200 Msa1428790:intron 40.0%
ATGTCTATCCATCCCATTTC+AGG + tig0026414:1356-1375 Msa1428790:intron 40.0%
! GACCTAGAGAACTTTCAAGT+AGG - tig0026414:1490-1509 None:intergenic 40.0%
!! TTTCTGCTGTATCAGGTTGA+AGG + tig0026414:1816-1835 Msa1428790:intron 40.0%
!! TTCTGCTGTATCAGGTTGAA+GGG + tig0026414:1817-1836 Msa1428790:intron 40.0%
GGTAGAGATCGAAGTATATC+AGG - tig0026414:1854-1873 None:intergenic 40.0%
AAGCACCATATGCTGCAATA+AGG - tig0026414:1976-1995 None:intergenic 40.0%
GGTGCTTTCTTAAAGGCAAA+TGG + tig0026414:1989-2008 Msa1428790:CDS 40.0%
ATGGTGAAACACCAGTAACT+TGG + tig0026414:2008-2027 Msa1428790:CDS 40.0%
GAAAATCCAATGTTTCGCGT+AGG + tig0026414:2412-2431 Msa1428790:CDS 40.0%
!! GTCTGCTTTTGGATAACAAC+AGG + tig0026414:2464-2483 Msa1428790:intron 40.0%
CACATGATGTCTTGAAAAGG+TGG - tig0026414:2504-2523 None:intergenic 40.0%
TTCTTCAATTCTGCAAGTCC+AGG - tig0026414:2559-2578 None:intergenic 40.0%
AGCAATGTGTGGTACTACAA+CGG - tig0026414:2584-2603 None:intergenic 40.0%
! GTTAGTTTACTAGGGAGAAG+GGG - tig0026414:2725-2744 None:intergenic 40.0%
!! GGTTAGTTTACTAGGGAGAA+GGG - tig0026414:2726-2745 None:intergenic 40.0%
!! TGGTTAGTTTACTAGGGAGA+AGG - tig0026414:2727-2746 None:intergenic 40.0%
GGTGGATATGCAAATGTTAG+TGG - tig0026414:2747-2766 None:intergenic 40.0%
TTTCATGCATGTGTTTGCAG+TGG + tig0026414:2818-2837 Msa1428790:intron 40.0%
ATCCAAGATGGAGAGACATA+GGG - tig0026414:2892-2911 None:intergenic 40.0%
AATCCAAGATGGAGAGACAT+AGG - tig0026414:2893-2912 None:intergenic 40.0%
ACGTAGGAATGAATCCAAGA+TGG - tig0026414:2904-2923 None:intergenic 40.0%
GATGAGCCTCCTTATAATAC+AGG + tig0026414:2964-2983 Msa1428790:intron 40.0%
TCTTGCCCTGTATTATAAGG+AGG - tig0026414:2973-2992 None:intergenic 40.0%
CTATTGGCATCAAACCATAC+TGG - tig0026414:3006-3025 None:intergenic 40.0%
CAGTATGGTTTGATGCCAAT+AGG + tig0026414:3004-3023 Msa1428790:CDS 40.0%
ATAAAAGCAACTCTCGGGAG+AGG + tig0026414:482-501 Msa1428790:intron 45.0%
TAAAAGCAACTCTCGGGAGA+GGG + tig0026414:483-502 Msa1428790:intron 45.0%
! CTTTTGCAGCTGACTGAAGA+CGG + tig0026414:531-550 Msa1428790:intron 45.0%
! TTTTGCAGCTGACTGAAGAC+GGG + tig0026414:532-551 Msa1428790:intron 45.0%
! TTCTCTGCTTTGAGCAAAGC+AGG + tig0026414:566-585 Msa1428790:five_prime_UTR 45.0%
AGCTGCTAGAAGGATAGTTG+AGG + tig0026414:1018-1037 Msa1428790:five_prime_UTR 45.0%
TTGAGGCAGATGAGTTCATG+AGG + tig0026414:1035-1054 Msa1428790:exon 45.0%
TGAGGCAGATGAGTTCATGA+GGG + tig0026414:1036-1055 Msa1428790:exon 45.0%
! CTATACACTCTTCTGAAGGC+TGG + tig0026414:1185-1204 Msa1428790:intron 45.0%
TGCTCAAGGGACAAACAGTT+TGG + tig0026414:1254-1273 Msa1428790:CDS 45.0%
CAAGTGAACCTGAAATGGGA+TGG - tig0026414:1367-1386 None:intergenic 45.0%
CAGCTGCAAAGTTTAACTCG+AGG - tig0026414:2092-2111 None:intergenic 45.0%
AAGACTCGCCAAGATGAAGA+AGG + tig0026414:2223-2242 Msa1428790:CDS 45.0%
GCAAGTCCAGGTTTCATGTA+GGG - tig0026414:2547-2566 None:intergenic 45.0%
TGCAAGTCCAGGTTTCATGT+AGG - tig0026414:2548-2567 None:intergenic 45.0%
TTGGAAGCAGAAGCAATGTG+TGG - tig0026414:2595-2614 None:intergenic 45.0%
ACACATTGCTTCTGCTTCCA+AGG + tig0026414:2594-2613 Msa1428790:CDS 45.0%
ATCCCTATGTCTCTCCATCT+TGG + tig0026414:2887-2906 Msa1428790:CDS 45.0%
AAGATCAAGGCTACCCAGTA+TGG + tig0026414:2989-3008 Msa1428790:CDS 45.0%
ATGGTTTGATGCCAATAGGG+TGG + tig0026414:3008-3027 Msa1428790:CDS 45.0%
AAGAAATGGCTCCACCCTAT+TGG - tig0026414:3022-3041 None:intergenic 45.0%
!! TTATATATTTAAATTACTTA+TGG + tig0026414:2269-2288 Msa1428790:intron 5.0%
TTTGCAGCTGACTGAAGACG+GGG + tig0026414:533-552 Msa1428790:intron 50.0%
! TCTGCTTTGAGCAAAGCAGG+AGG + tig0026414:569-588 Msa1428790:five_prime_UTR 50.0%
GGGAGTTCTCACAGAGACTA+CGG + tig0026414:967-986 Msa1428790:intron 50.0%
!! GCTTGCAGCTTCACTGACTT+TGG + tig0026414:994-1013 Msa1428790:five_prime_UTR 50.0%
TGACTTTGGCAGCTGCTAGA+AGG + tig0026414:1008-1027 Msa1428790:five_prime_UTR 50.0%
GGGCAGGATTATATGATGGC+TGG + tig0026414:1056-1075 Msa1428790:CDS 50.0%
!! CAGTTTGGTGTTATCGGAGC+TGG + tig0026414:1269-1288 Msa1428790:CDS 50.0%
GGAAGGCTTGTCCAGTAACT+TGG - tig0026414:1708-1727 None:intergenic 50.0%
! GCTGCCCTTTTCCAAGTTAC+TGG - tig0026414:2022-2041 None:intergenic 50.0%
TTGGAAAAGGGCAGCATCCA+TGG + tig0026414:2027-2046 Msa1428790:CDS 50.0%
CTTGTTGACGAGGTGGTAAG+TGG - tig0026414:2201-2220 None:intergenic 50.0%
CACTTACCACCTCGTCAACA+AGG + tig0026414:2199-2218 Msa1428790:CDS 50.0%
GTCTTTCCTTGTTGACGAGG+TGG - tig0026414:2208-2227 None:intergenic 50.0%
CGAGTCTTTCCTTGTTGACG+AGG - tig0026414:2211-2230 None:intergenic 50.0%
TCAAGGCCTACGCGAAACAT+TGG - tig0026414:2421-2440 None:intergenic 50.0%
CGTAGGCCTTGATGTGTTTG+AGG + tig0026414:2429-2448 Msa1428790:CDS 50.0%
GATGAGCCCTACATGAAACC+TGG + tig0026414:2538-2557 Msa1428790:CDS 50.0%
! TGTTTGCAGTGGACTCGTGA+GGG + tig0026414:2829-2848 Msa1428790:intron 50.0%
!! GCTAGCAGCTCTAAATGTGC+TGG + tig0026414:2861-2880 Msa1428790:CDS 50.0%
GCAGATGAGTTCATGAGGGC+AGG + tig0026414:1040-1059 Msa1428790:exon 55.0%
GTTATCGGAGCTGGCCGTAT+TGG + tig0026414:1278-1297 Msa1428790:CDS 55.0%
TCCATGGACGAGGTTCTCCA+AGG + tig0026414:2043-2062 Msa1428790:intron 55.0%
CCATGGACGAGGTTCTCCAA+GGG + tig0026414:2044-2063 Msa1428790:intron 55.0%
! GTCTTTTCATGTCCCCGCAG+TGG + tig0026414:2640-2659 Msa1428790:intron 55.0%
TTCATGTCCCCGCAGTGGTA+TGG + tig0026414:2645-2664 Msa1428790:intron 55.0%
TCATGTCCCCGCAGTGGTAT+GGG + tig0026414:2646-2665 Msa1428790:intron 55.0%
AGTCCCAACCCATACCACTG+CGG - tig0026414:2657-2676 None:intergenic 55.0%
! GTGTTTGCAGTGGACTCGTG+AGG + tig0026414:2828-2847 Msa1428790:intron 55.0%
ACAATGCTTGGGCATGCAGC+TGG - tig0026414:3062-3081 None:intergenic 55.0%
AAGGGCAGCATCCATGGACG+AGG + tig0026414:2033-2052 Msa1428790:CDS 60.0%
CCCTTGGAGAACCTCGTCCA+TGG - tig0026414:2047-2066 None:intergenic 60.0%
TCCCCGCAGTGGTATGGGTT+GGG + tig0026414:2651-2670 Msa1428790:intron 60.0%
TCCCAACCCATACCACTGCG+GGG - tig0026414:2655-2674 None:intergenic 60.0%
GTCCCAACCCATACCACTGC+GGG - tig0026414:2656-2675 None:intergenic 60.0%
! GCAGTGGACTCGTGAGGGAA+TGG + tig0026414:2834-2853 Msa1428790:intron 60.0%
ATGCTTGGGCATGCAGCTGG+AGG - tig0026414:3059-3078 None:intergenic 60.0%
GTCCCCGCAGTGGTATGGGT+TGG + tig0026414:2650-2669 Msa1428790:intron 65.0%
Chromosome Type Strat End Strand Name
tig0026414 gene 1 3098 1 ID=Msa1428790;Name=Msa1428790
tig0026414 mRNA 1 3098 1 ID=Msa1428790-mRNA-1;Parent=Msa1428790;Name=Msa1428790-mRNA-1;_AED=0.25;_eAED=0.25;_QI=293|0.66|0.7|1|0.66|0.7|10|0|221
tig0026414 exon 1 73 1 ID=Msa1428790-mRNA-1:exon:6183;Parent=Msa1428790-mRNA-1
tig0026414 exon 540 675 540 ID=Msa1428790-mRNA-1:exon:6184;Parent=Msa1428790-mRNA-1
tig0026414 exon 968 1089 968 ID=Msa1428790-mRNA-1:exon:6185;Parent=Msa1428790-mRNA-1
tig0026414 exon 1240 1322 1240 ID=Msa1428790-mRNA-1:exon:6186;Parent=Msa1428790-mRNA-1
tig0026414 exon 1984 2054 1984 ID=Msa1428790-mRNA-1:exon:6187;Parent=Msa1428790-mRNA-1
tig0026414 exon 2170 2244 2170 ID=Msa1428790-mRNA-1:exon:6188;Parent=Msa1428790-mRNA-1
tig0026414 exon 2343 2450 2343 ID=Msa1428790-mRNA-1:exon:6189;Parent=Msa1428790-mRNA-1
tig0026414 exon 2538 2615 2538 ID=Msa1428790-mRNA-1:exon:6190;Parent=Msa1428790-mRNA-1
tig0026414 exon 2838 2921 2838 ID=Msa1428790-mRNA-1:exon:6191;Parent=Msa1428790-mRNA-1
tig0026414 exon 2970 3098 2970 ID=Msa1428790-mRNA-1:exon:6192;Parent=Msa1428790-mRNA-1
tig0026414 five_prime_UTR 1 73 1 ID=Msa1428790-mRNA-1:five_prime_utr;Parent=Msa1428790-mRNA-1
tig0026414 five_prime_UTR 540 675 540 ID=Msa1428790-mRNA-1:five_prime_utr;Parent=Msa1428790-mRNA-1
tig0026414 five_prime_UTR 968 1051 968 ID=Msa1428790-mRNA-1:five_prime_utr;Parent=Msa1428790-mRNA-1
tig0026414 CDS 1052 1089 1052 ID=Msa1428790-mRNA-1:cds;Parent=Msa1428790-mRNA-1
tig0026414 CDS 1240 1322 1240 ID=Msa1428790-mRNA-1:cds;Parent=Msa1428790-mRNA-1
tig0026414 CDS 1984 2054 1984 ID=Msa1428790-mRNA-1:cds;Parent=Msa1428790-mRNA-1
tig0026414 CDS 2170 2244 2170 ID=Msa1428790-mRNA-1:cds;Parent=Msa1428790-mRNA-1
tig0026414 CDS 2343 2450 2343 ID=Msa1428790-mRNA-1:cds;Parent=Msa1428790-mRNA-1
tig0026414 CDS 2538 2615 2538 ID=Msa1428790-mRNA-1:cds;Parent=Msa1428790-mRNA-1
tig0026414 CDS 2838 2921 2838 ID=Msa1428790-mRNA-1:cds;Parent=Msa1428790-mRNA-1
tig0026414 CDS 2970 3098 2970 ID=Msa1428790-mRNA-1:cds;Parent=Msa1428790-mRNA-1
Gene Sequence

>Msa1428790

ATGAGGGCAGGATTATATGATGGCTGGCTACCTCATCTATTTGTTGGAAACTTGCTCAAGGGACAAACAGTTTGGTGTTATCGGAGCTGGCCGTATTGGATCAGCTTATGCAAGAATGATGCATATGGTGCTTTCTTAAAGGCAAATGGTGAAACACCAGTAACTTGGAAAAGGGCAGCATCCATGGACGAGATTAGTCTTCATCCTATCTTGGATAAAACCACTTACCACCTCGTCAACAAGGAAAGACTCGCCAAGATGAAGAAGGAAGCAATTCTTATAAACTGCAGTAGAGGACCTGTTATTGATGAAGTTGCACTTGTGGAGCATTTAAAAGAAAATCCAATGTTTCGCGTAGGCCTTGATGTGTTTGAGGATGAGCCCTACATGAAACCTGGACTTGCAGAATTGAAGAATGCCGTTGTAGTACCACACATTGCTTCTGCTTCCAAGTGGACTCGTGAGGGAATGGCAACGCTAGCAGCTCTAAATGTGCTGGTATATCCCTATGTCTCTCCATCTTGGATTCATTCCTACCCTCCTTATAATACAGGGCAAGATCAAGGCTACCCAGTATGGTTTGATGCCAATAGGGTGGAGCCATTTCTTGATGAAATGCTCAACCTCCAGCTGCATGCCCAAGCATTGTTAATGCAAAAGCCCTGA

Protein sequence

>Msa1428790

MRAGLYDGWLPHLFVGNLLKGQTVWCYRSWPYWISLCKNDAYGAFLKANGETPVTWKRAASMDEISLHPILDKTTYHLVNKERLAKMKKEAILINCSRGPVIDEVALVEHLKENPMFRVGLDVFEDEPYMKPGLAELKNAVVVPHIASASKWTREGMATLAALNVLVYPYVSPSWIHSYPPYNTGQDQGYPVWFDANRVEPFLDEMLNLQLHAQALLMQKP*