AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0169330


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0169330 MtrunA17_Chr1g0186031 95.816 239 10 0 1 239 1 239 8.83e-175 479
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0169330 AT2G33255.1 68.161 223 69 1 19 239 23 245 1.31e-115 331

Find 83 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTAAGCTTTATTGACTTCTT+AGG 0.133455 1_4:+52540837 Msa0169330:three_prime_UTR
AACCACTTACATCATCTTTA+AGG 0.144402 1_4:-52539931 None:intergenic
AAATGCTGATGTCAGATTTC+TGG 0.175133 1_4:-52538197 None:intergenic
TTACCTATTACTAGTTTCTT+TGG 0.219683 1_4:+52540922 Msa0169330:three_prime_UTR
ATTTATTCCACCAACGCTTT+GGG 0.274021 1_4:+52538723 Msa0169330:CDS
GAAATCGACATTAGCATATT+CGG 0.286039 1_4:-52540544 None:intergenic
TTCTTGATTCAAAGAAAATT+AGG 0.286367 1_4:+52538663 Msa0169330:CDS
TACTGCATATCTGTTCTCTT+TGG 0.304882 1_4:+52539870 Msa0169330:CDS
ATTTACTACCAGGCATGATT+TGG 0.318202 1_4:-52538550 None:intergenic
GATTTATTCCACCAACGCTT+TGG 0.319915 1_4:+52538722 Msa0169330:CDS
ATCATAAACCACAAAATAAA+TGG 0.325555 1_4:-52540664 None:intergenic
TGATGTCAGATTTCTGGTTT+TGG 0.332123 1_4:-52538191 None:intergenic
GACGCCACGGAGGCGCGTTT+TGG 0.336627 1_4:-52538315 None:intergenic
AATCCAAAGAAACTAGTAAT+AGG 0.348757 1_4:-52540925 None:intergenic
ACTGCATATCTGTTCTCTTT+GGG 0.358743 1_4:+52539871 Msa0169330:CDS
AATAATGTTGTATCATATCT+TGG 0.360992 1_4:+52540805 Msa0169330:three_prime_UTR
AAAATGAGCAATGGTATCAT+AGG 0.361847 1_4:-52538504 None:intergenic
CCGACCATTACTACTTCATT+TGG 0.368014 1_4:-52539902 None:intergenic
AGGGAAGTTACCTTGAAATC+TGG 0.368119 1_4:-52540570 None:intergenic
AAATCGACATTAGCATATTC+GGG 0.370379 1_4:-52540543 None:intergenic
TAAGCTTTATTGACTTCTTA+GGG 0.375413 1_4:+52540838 Msa0169330:three_prime_UTR
TTAGCATCATCGTATGTGTT+TGG 0.378782 1_4:+52541040 Msa0169330:three_prime_UTR
GGAGCTGGATCAGGTTTATA+AGG 0.385703 1_4:-52539845 None:intergenic
TGGTTTATGATATAAGAATC+TGG 0.392922 1_4:+52540676 Msa0169330:three_prime_UTR
CGATTTCAAACCAGATTTCA+AGG 0.418712 1_4:+52540560 Msa0169330:CDS
ACTTGTCTGCTTGATCAAAC+TGG 0.423784 1_4:+52540507 Msa0169330:CDS
TTTATTCCTCACCTCATGTA+AGG 0.429471 1_4:+52540728 Msa0169330:three_prime_UTR
TACTAGTTTCTTTGGATTCG+CGG 0.435189 1_4:+52540930 Msa0169330:three_prime_UTR
ATTGCTTGTGGAGGGCGAGC+AGG 0.444789 1_4:+52540477 Msa0169330:CDS
TTAGGAGGGGTTTGATTACA+AGG 0.448691 1_4:+52538681 Msa0169330:CDS
CAAATGAAGTAGTAATGGTC+GGG 0.454036 1_4:+52539903 Msa0169330:CDS
TGCAGTAGTGGAGCTGGATC+AGG 0.459438 1_4:-52539854 None:intergenic
ATCGATTCCAGCAGGGTTTG+AGG 0.464862 1_4:-52538435 None:intergenic
TGCTAATAACTGATCAGCCT+TGG 0.470390 1_4:-52541023 None:intergenic
GAGGAGGTGACATCTACATT+TGG 0.473312 1_4:+52540698 Msa0169330:three_prime_UTR
TTCAAGATATCGATTCCAGC+AGG 0.477823 1_4:-52538443 None:intergenic
AACTGACCCCAAAGCGTTGG+TGG 0.483746 1_4:-52538730 None:intergenic
CAGATATGCAGTAGTGGAGC+TGG 0.491301 1_4:-52539860 None:intergenic
CGCGCAATATCGTGTCAAAC+GGG 0.494160 1_4:-52540989 None:intergenic
CGAAATTCCCTGCTTAATGC+TGG 0.499413 1_4:-52539821 None:intergenic
TACTACCAGGCATGATTTGG+AGG 0.499592 1_4:-52538547 None:intergenic
ACGCGCAATATCGTGTCAAA+CGG 0.505203 1_4:-52540990 None:intergenic
ACTAGTTTCTTTGGATTCGC+GGG 0.509737 1_4:+52540931 Msa0169330:three_prime_UTR
GCCGAGTACTGCTTTGTACA+TGG 0.510991 1_4:-52538387 None:intergenic
GCGAACAAAACTTGAGATCA+TGG 0.518487 1_4:-52540636 None:intergenic
GTCAAAGCCTCAAACCCTGC+TGG 0.521374 1_4:+52538428 Msa0169330:CDS
ACATGGTGCGTGGGAAGAGA+AGG 0.533604 1_4:-52538277 None:intergenic
GAGCAATGGTATCATAGGCT+TGG 0.543525 1_4:-52538499 None:intergenic
TTGATTCAAAGAAAATTAGG+AGG 0.544314 1_4:+52538666 Msa0169330:CDS
TCTTGAAACTCATTGATCAC+TGG 0.545427 1_4:+52538459 Msa0169330:CDS
GAATGAATGTCACAAAATAG+TGG 0.551438 1_4:+52540860 Msa0169330:three_prime_UTR
TCAACCAAATGAAGTAGTAA+TGG 0.553506 1_4:+52539898 Msa0169330:CDS
GATCACCTCCAAATCATGCC+TGG 0.556305 1_4:+52538542 Msa0169330:CDS
AGGGAAATCAATGACGGGGA+CGG 0.561282 1_4:-52538363 None:intergenic
TCCATGTACAAAGCAGTACT+CGG 0.569767 1_4:+52538386 Msa0169330:CDS
ATGGAAGGGAAATCAATGAC+GGG 0.572088 1_4:-52538368 None:intergenic
AGTACTGCTTTGTACATGGA+AGG 0.576818 1_4:-52538383 None:intergenic
CCAAATGAAGTAGTAATGGT+CGG 0.579295 1_4:+52539902 Msa0169330:CDS
TAGGCTTGGCGTTGTTGATG+TGG 0.585097 1_4:-52538485 None:intergenic
AGAGAACAGATATGCAGTAG+TGG 0.586307 1_4:-52539866 None:intergenic
GGTGGTTAAGTGTGATGACA+TGG 0.587907 1_4:-52538294 None:intergenic
TGATTCAAAGAAAATTAGGA+GGG 0.590623 1_4:+52538667 Msa0169330:CDS
ATGATATAAGAATCTGGAGG+AGG 0.593886 1_4:+52540682 Msa0169330:three_prime_UTR
TTATGACCTTACATGAGGTG+AGG 0.604806 1_4:-52540734 None:intergenic
AAATGAAGTAGTAATGGTCG+GGG 0.605638 1_4:+52539904 Msa0169330:CDS
AATTGAGTAAACTTCAGAGA+GGG 0.606847 1_4:-52540589 None:intergenic
TGCGCGTGTTAAGATTTCCA+AGG 0.606876 1_4:+52541006 Msa0169330:three_prime_UTR
GATTCAAAGAAAATTAGGAG+GGG 0.613293 1_4:+52538668 Msa0169330:CDS
CATGGAAGGGAAATCAATGA+CGG 0.615972 1_4:-52538369 None:intergenic
TTTATTCCACCAACGCTTTG+GGG 0.616024 1_4:+52538724 Msa0169330:CDS
TAAAACTGACCCCAAAGCGT+TGG 0.618013 1_4:-52538733 None:intergenic
GAGGTGACATCTACATTTGG+AGG 0.622873 1_4:+52540701 Msa0169330:three_prime_UTR
GTCTGCTTGATCAAACTGGA+AGG 0.626822 1_4:+52540511 Msa0169330:CDS
AAGTGTGATGACATGGTGCG+TGG 0.628658 1_4:-52538287 None:intergenic
TCAAGATATCGATTCCAGCA+GGG 0.632481 1_4:-52538442 None:intergenic
ACCACCAAAACGCGCCTCCG+TGG 0.633706 1_4:+52538311 Msa0169330:CDS
GTACTGCTTTGTACATGGAA+GGG 0.645077 1_4:-52538382 None:intergenic
CCATGTCGAAAACGACGCCA+CGG 0.669079 1_4:-52538328 None:intergenic
AGTGTGATGACATGGTGCGT+GGG 0.699733 1_4:-52538286 None:intergenic
TGTCGAAAACGACGCCACGG+AGG 0.727352 1_4:-52538325 None:intergenic
TGGAAGGGAAATCAATGACG+GGG 0.729656 1_4:-52538367 None:intergenic
GAATTGAGTAAACTTCAGAG+AGG 0.733429 1_4:-52540590 None:intergenic
TTTATGATATAAGAATCTGG+AGG 0.768254 1_4:+52540679 Msa0169330:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTACTTTTTTTATTATATT+AGG + chr1_4:52538593-52538612 Msa0169330:intron 10.0%
!!! TTACTTTTCTTTCTTATATT+TGG + chr1_4:52538753-52538772 Msa0169330:intron 15.0%
!!! TGATTTTTTCAAATTATTAG+CGG + chr1_4:52538886-52538905 Msa0169330:intron 15.0%
!! ATTGAATATGAACAAATAAA+AGG - chr1_4:52539689-52539708 None:intergenic 15.0%
!!! TTTTATTTGTTCATATTCAA+TGG + chr1_4:52539688-52539707 Msa0169330:intron 15.0%
!!! TAGTAAAGTAGATTTTGAAT+GGG - chr1_4:52538227-52538246 None:intergenic 20.0%
!! TTCTTGATTCAAAGAAAATT+AGG + chr1_4:52538663-52538682 Msa0169330:CDS 20.0%
!! TCAATTTACATTACACAATT+GGG + chr1_4:52538778-52538797 Msa0169330:intron 20.0%
!! GAGCATGTTTATAAAAAAAA+GGG - chr1_4:52539147-52539166 None:intergenic 20.0%
!! AGAGCATGTTTATAAAAAAA+AGG - chr1_4:52539148-52539167 None:intergenic 20.0%
!! TTTCTCAAAGATTAACAAAA+TGG - chr1_4:52539258-52539277 None:intergenic 20.0%
!!! GATTTTATTCTATCTTGTTA+TGG - chr1_4:52539409-52539428 None:intergenic 20.0%
!!! TTGTTTGAATTGACTTATTT+AGG - chr1_4:52539580-52539599 None:intergenic 20.0%
!! AATATGAACAAATAAAAGGA+GGG - chr1_4:52539685-52539704 None:intergenic 20.0%
!! GAACATTCAATCAAATTAAT+GGG - chr1_4:52539962-52539981 None:intergenic 20.0%
!! TGAACATTCAATCAAATTAA+TGG - chr1_4:52539963-52539982 None:intergenic 20.0%
!! TTGAATGTTCATGATTTATA+TGG + chr1_4:52539972-52539991 Msa0169330:intron 20.0%
!! ATCATAAACCACAAAATAAA+TGG - chr1_4:52540667-52540686 None:intergenic 20.0%
!! AATAATGTTGTATCATATCT+TGG + chr1_4:52540805-52540824 Msa0169330:three_prime_UTR 20.0%
!! CTAGTAAAGTAGATTTTGAA+TGG - chr1_4:52538228-52538247 None:intergenic 25.0%
! TACAAAAGAAGAAGAAAAGT+AGG - chr1_4:52538577-52538596 None:intergenic 25.0%
! TGATTAATTAATTATGCTGC+AGG + chr1_4:52538620-52538639 Msa0169330:intron 25.0%
! TTGATTCAAAGAAAATTAGG+AGG + chr1_4:52538666-52538685 Msa0169330:CDS 25.0%
! TGATTCAAAGAAAATTAGGA+GGG + chr1_4:52538667-52538686 Msa0169330:CDS 25.0%
! CTCAATTTACATTACACAAT+TGG + chr1_4:52538777-52538796 Msa0169330:intron 25.0%
! TTCATTGTAATTATGTGTGT+CGG - chr1_4:52538861-52538880 None:intergenic 25.0%
! TGTTATCAAGTTACTACTAT+TGG + chr1_4:52539180-52539199 Msa0169330:intron 25.0%
! GGAGTTAAATCTATAAAGTT+TGG + chr1_4:52539220-52539239 Msa0169330:intron 25.0%
! GAGAAAACAAAATCAGTAAA+AGG + chr1_4:52539272-52539291 Msa0169330:intron 25.0%
!! GACAACTGAGTAATTTTATA+TGG + chr1_4:52539316-52539335 Msa0169330:intron 25.0%
!!! AGATGTTCATAAGTTGTTTT+CGG - chr1_4:52539497-52539516 None:intergenic 25.0%
! AATTCAAACAAACCCTTAAA+AGG + chr1_4:52539589-52539608 Msa0169330:intron 25.0%
! GCATAATAAATTGAACTAAC+AGG + chr1_4:52539644-52539663 Msa0169330:intron 25.0%
! ATATGAACAAATAAAAGGAG+GGG - chr1_4:52539684-52539703 None:intergenic 25.0%
! GAATATGAACAAATAAAAGG+AGG - chr1_4:52539686-52539705 None:intergenic 25.0%
! AGAAACAATTGTAAAATCGA+AGG + chr1_4:52540038-52540057 Msa0169330:intron 25.0%
! ATTGAAACGGTTAAAGTTAT+GGG - chr1_4:52540241-52540260 None:intergenic 25.0%
! AATTGAAACGGTTAAAGTTA+TGG - chr1_4:52540242-52540261 None:intergenic 25.0%
! TAAGTGGCATAAAATTGAAA+CGG - chr1_4:52540254-52540273 None:intergenic 25.0%
!!! TTTTATGCCACTTATAATAC+CGG + chr1_4:52540260-52540279 Msa0169330:intron 25.0%
! TCTTCACAATCATAAATAAG+TGG + chr1_4:52540310-52540329 Msa0169330:intron 25.0%
! TGAATCAACAAATATTTCGT+TGG - chr1_4:52540398-52540417 None:intergenic 25.0%
!!! TTTGTTGATTCAGATGTATT+TGG + chr1_4:52540406-52540425 Msa0169330:intron 25.0%
!! TCTTGAGACAAATTTTGAAT+TGG + chr1_4:52540611-52540630 Msa0169330:CDS 25.0%
! TGGTTTATGATATAAGAATC+TGG + chr1_4:52540676-52540695 Msa0169330:three_prime_UTR 25.0%
! TTTATGATATAAGAATCTGG+AGG + chr1_4:52540679-52540698 Msa0169330:three_prime_UTR 25.0%
!!! TTTTTTTATGACCTTACATG+AGG - chr1_4:52540742-52540761 None:intergenic 25.0%
!!! AAAAAGTCCTTGACATTTTT+TGG + chr1_4:52540761-52540780 Msa0169330:three_prime_UTR 25.0%
!!! TAAGCTTTATTGACTTCTTA+GGG + chr1_4:52540838-52540857 Msa0169330:three_prime_UTR 25.0%
!! TTACCTATTACTAGTTTCTT+TGG + chr1_4:52540922-52540941 Msa0169330:three_prime_UTR 25.0%
! AATCCAAAGAAACTAGTAAT+AGG - chr1_4:52540928-52540947 None:intergenic 25.0%
! CGTATATGTAGTTTTTGTGT+GGG - chr1_4:52538141-52538160 None:intergenic 30.0%
CCACACAAAAACTACATATA+CGG + chr1_4:52538139-52538158 Msa0169330:five_prime_UTR 30.0%
AAAATGAGCAATGGTATCAT+AGG - chr1_4:52538507-52538526 None:intergenic 30.0%
!! CTGTTTTTCAAAATGAGCAA+TGG - chr1_4:52538516-52538535 None:intergenic 30.0%
!! CATTGCTCATTTTGAAAAAC+AGG + chr1_4:52538514-52538533 Msa0169330:CDS 30.0%
AAAAGTAGGTATTTACTACC+AGG - chr1_4:52538563-52538582 None:intergenic 30.0%
GATTCAAAGAAAATTAGGAG+GGG + chr1_4:52538668-52538687 Msa0169330:CDS 30.0%
TTTACATTACACAATTGGGT+TGG + chr1_4:52538782-52538801 Msa0169330:intron 30.0%
TTTCAAATTATTAGCGGTGT+CGG + chr1_4:52538892-52538911 Msa0169330:intron 30.0%
AAGCCAATGTTGTTAAATAG+CGG - chr1_4:52539035-52539054 None:intergenic 30.0%
CATTATTGTCATGTCAACAA+AGG + chr1_4:52539087-52539106 Msa0169330:intron 30.0%
ATTGGCTGTAGTTTCAATAT+TGG + chr1_4:52539198-52539217 Msa0169330:intron 30.0%
TTGGCTGTAGTTTCAATATT+GGG + chr1_4:52539199-52539218 Msa0169330:intron 30.0%
ATACTGTTTGAGAAAGCTTA+TGG - chr1_4:52539532-52539551 None:intergenic 30.0%
! AAAGCAGATGAACCTTTTAA+GGG - chr1_4:52539604-52539623 None:intergenic 30.0%
! AAAAGCAGATGAACCTTTTA+AGG - chr1_4:52539605-52539624 None:intergenic 30.0%
!!! GCTTTTTTACCCAATTCTAT+TGG + chr1_4:52539619-52539638 Msa0169330:intron 30.0%
! TTTTTACCCAATTCTATTGG+AGG + chr1_4:52539622-52539641 Msa0169330:intron 30.0%
ATTATGCCTCCAATAGAATT+GGG - chr1_4:52539631-52539650 None:intergenic 30.0%
TATTATGCCTCCAATAGAAT+TGG - chr1_4:52539632-52539651 None:intergenic 30.0%
! ATTGAACTAACAGGTTTTTC+TGG + chr1_4:52539653-52539672 Msa0169330:intron 30.0%
TCAACCAAATGAAGTAGTAA+TGG + chr1_4:52539898-52539917 Msa0169330:CDS 30.0%
AACCACTTACATCATCTTTA+AGG - chr1_4:52539934-52539953 None:intergenic 30.0%
TTTCACAACAAAATCCAGAA+AGG + chr1_4:52540084-52540103 Msa0169330:intron 30.0%
! GTCTACTAGTTAGAACTTTT+AGG - chr1_4:52540111-52540130 None:intergenic 30.0%
TTTACAAGCAATCACACTAT+GGG - chr1_4:52540174-52540193 None:intergenic 30.0%
! TTTTACAAGCAATCACACTA+TGG - chr1_4:52540175-52540194 None:intergenic 30.0%
ATACCAAAATGCATAGTGAA+AGG - chr1_4:52540215-52540234 None:intergenic 30.0%
!! TTTGATTTGCAATAAGGATG+AGG + chr1_4:52540285-52540304 Msa0169330:intron 30.0%
!! TTGATTTGCAATAAGGATGA+GGG + chr1_4:52540286-52540305 Msa0169330:intron 30.0%
TGGAAAATATGTGCATAGAA+TGG - chr1_4:52540378-52540397 None:intergenic 30.0%
! GATTCAGATGTATTTGGAAT+TGG + chr1_4:52540412-52540431 Msa0169330:intron 30.0%
AAATCGACATTAGCATATTC+GGG - chr1_4:52540546-52540565 None:intergenic 30.0%
GAAATCGACATTAGCATATT+CGG - chr1_4:52540547-52540566 None:intergenic 30.0%
AATTGAGTAAACTTCAGAGA+GGG - chr1_4:52540592-52540611 None:intergenic 30.0%
CTATGAACCAAAAAATGTCA+AGG - chr1_4:52540771-52540790 None:intergenic 30.0%
!!! CTTGACATTTTTTGGTTCAT+AGG + chr1_4:52540769-52540788 Msa0169330:three_prime_UTR 30.0%
!!! ACATTTTTTGGTTCATAGGT+GGG + chr1_4:52540773-52540792 Msa0169330:three_prime_UTR 30.0%
!! GTAAGCTTTATTGACTTCTT+AGG + chr1_4:52540837-52540856 Msa0169330:three_prime_UTR 30.0%
GAATGAATGTCACAAAATAG+TGG + chr1_4:52540860-52540879 Msa0169330:three_prime_UTR 30.0%
! CCGTATATGTAGTTTTTGTG+TGG - chr1_4:52538142-52538161 None:intergenic 35.0%
!!! TTTTGGTACTTTTCTGAGGT+TGG - chr1_4:52538177-52538196 None:intergenic 35.0%
!!! TGATGTCAGATTTCTGGTTT+TGG - chr1_4:52538194-52538213 None:intergenic 35.0%
AAATGCTGATGTCAGATTTC+TGG - chr1_4:52538200-52538219 None:intergenic 35.0%
TCTTGAAACTCATTGATCAC+TGG + chr1_4:52538459-52538478 Msa0169330:CDS 35.0%
ATTTACTACCAGGCATGATT+TGG - chr1_4:52538553-52538572 None:intergenic 35.0%
ATTTATTCCACCAACGCTTT+GGG + chr1_4:52538723-52538742 Msa0169330:CDS 35.0%
ACAACACTGAATATGAAGCA+CGG - chr1_4:52538941-52538960 None:intergenic 35.0%
GCACAGATTGCAAAAAATAG+TGG + chr1_4:52538964-52538983 Msa0169330:intron 35.0%
TAGCCGCTATTTAACAACAT+TGG + chr1_4:52539029-52539048 Msa0169330:intron 35.0%
! GCTATTTAACAACATTGGCT+TGG + chr1_4:52539034-52539053 Msa0169330:intron 35.0%
CATGTCAACAAAGGTTTGTA+TGG + chr1_4:52539096-52539115 Msa0169330:intron 35.0%
! GTAAAAGGAATTTGAGACTG+TGG + chr1_4:52539287-52539306 Msa0169330:intron 35.0%
! AAGCTATCTTAGAGAGCTTT+TGG + chr1_4:52539464-52539483 Msa0169330:intron 35.0%
ATATTCAATGGCTCATCGAA+TGG + chr1_4:52539700-52539719 Msa0169330:intron 35.0%
! ATTTTCTCCAGCATTAAGCA+GGG + chr1_4:52539814-52539833 Msa0169330:CDS 35.0%
TACTGCATATCTGTTCTCTT+TGG + chr1_4:52539870-52539889 Msa0169330:CDS 35.0%
ACTGCATATCTGTTCTCTTT+GGG + chr1_4:52539871-52539890 Msa0169330:CDS 35.0%
CCAAATGAAGTAGTAATGGT+CGG + chr1_4:52539902-52539921 Msa0169330:CDS 35.0%
CAAATGAAGTAGTAATGGTC+GGG + chr1_4:52539903-52539922 Msa0169330:CDS 35.0%
AAATGAAGTAGTAATGGTCG+GGG + chr1_4:52539904-52539923 Msa0169330:CDS 35.0%
AGCCTTAAAGATGATGTAAG+TGG + chr1_4:52539929-52539948 Msa0169330:intron 35.0%
GATTGTTCATTTGTACCCAA+AGG - chr1_4:52540015-52540034 None:intergenic 35.0%
!! TAGAACTTTTAGGTCCTTTC+TGG - chr1_4:52540101-52540120 None:intergenic 35.0%
TGTAAAAGAACCCTATGACT+CGG + chr1_4:52540188-52540207 Msa0169330:intron 35.0%
TCAAATGCCGGTATTATAAG+TGG - chr1_4:52540270-52540289 None:intergenic 35.0%
CCTTATTGCAAATCAAATGC+CGG - chr1_4:52540282-52540301 None:intergenic 35.0%
GAAAGATATTGCTTCAAGCT+GGG - chr1_4:52540356-52540375 None:intergenic 35.0%
! CAGATGTATTTGGAATTGGA+TGG + chr1_4:52540416-52540435 Msa0169330:intron 35.0%
CGATTTCAAACCAGATTTCA+AGG + chr1_4:52540560-52540579 Msa0169330:CDS 35.0%
GAATTGAGTAAACTTCAGAG+AGG - chr1_4:52540593-52540612 None:intergenic 35.0%
ATGATATAAGAATCTGGAGG+AGG + chr1_4:52540682-52540701 Msa0169330:three_prime_UTR 35.0%
TTTATTCCTCACCTCATGTA+AGG + chr1_4:52540728-52540747 Msa0169330:three_prime_UTR 35.0%
!!! GACATTTTTTGGTTCATAGG+TGG + chr1_4:52540772-52540791 Msa0169330:three_prime_UTR 35.0%
! TACTAGTTTCTTTGGATTCG+CGG + chr1_4:52540930-52540949 Msa0169330:three_prime_UTR 35.0%
! TAGTTTTTGTGTGGGACGAA+CGG - chr1_4:52538133-52538152 None:intergenic 40.0%
!!! CTGGTTTTGGTACTTTTCTG+AGG - chr1_4:52538181-52538200 None:intergenic 40.0%
! GAAGAGAAGGAAAGCTTTTG+CGG - chr1_4:52538267-52538286 None:intergenic 40.0%
ATGGAAGGGAAATCAATGAC+GGG - chr1_4:52538371-52538390 None:intergenic 40.0%
CATGGAAGGGAAATCAATGA+CGG - chr1_4:52538372-52538391 None:intergenic 40.0%
GTACTGCTTTGTACATGGAA+GGG - chr1_4:52538385-52538404 None:intergenic 40.0%
AGTACTGCTTTGTACATGGA+AGG - chr1_4:52538386-52538405 None:intergenic 40.0%
TCCATGTACAAAGCAGTACT+CGG + chr1_4:52538386-52538405 Msa0169330:CDS 40.0%
!! TCAAGATATCGATTCCAGCA+GGG - chr1_4:52538445-52538464 None:intergenic 40.0%
!! TTCAAGATATCGATTCCAGC+AGG - chr1_4:52538446-52538465 None:intergenic 40.0%
TTAGGAGGGGTTTGATTACA+AGG + chr1_4:52538681-52538700 Msa0169330:CDS 40.0%
GATTTATTCCACCAACGCTT+TGG + chr1_4:52538722-52538741 Msa0169330:CDS 40.0%
TTTATTCCACCAACGCTTTG+GGG + chr1_4:52538724-52538743 Msa0169330:CDS 40.0%
! GTAATTATGTGTGTCGGTGT+CGG - chr1_4:52538855-52538874 None:intergenic 40.0%
CTGAATATGAAGCACGGATA+CGG - chr1_4:52538935-52538954 None:intergenic 40.0%
! GAATTTGAGACTGTGGCATT+TGG + chr1_4:52539294-52539313 Msa0169330:intron 40.0%
AAATGTAATCTGCAGCAACG+AGG - chr1_4:52539798-52539817 None:intergenic 40.0%
! CATTTTCTCCAGCATTAAGC+AGG + chr1_4:52539813-52539832 Msa0169330:CDS 40.0%
AGAGAACAGATATGCAGTAG+TGG - chr1_4:52539869-52539888 None:intergenic 40.0%
CCGACCATTACTACTTCATT+TGG - chr1_4:52539905-52539924 None:intergenic 40.0%
! AGCCATAATTTGTCCACCTT+TGG + chr1_4:52539996-52540015 Msa0169330:intron 40.0%
! GCCATAATTTGTCCACCTTT+GGG + chr1_4:52539997-52540016 Msa0169330:intron 40.0%
ACCCAAAGGTGGACAAATTA+TGG - chr1_4:52540001-52540020 None:intergenic 40.0%
TGTTCATTTGTACCCAAAGG+TGG - chr1_4:52540012-52540031 None:intergenic 40.0%
! GGTCCTTTCACTATGCATTT+TGG + chr1_4:52540209-52540228 Msa0169330:intron 40.0%
!! CCGGCATTTGATTTGCAATA+AGG + chr1_4:52540279-52540298 Msa0169330:intron 40.0%
ATAAATAAGTGGCCTGCACA+GGG + chr1_4:52540321-52540340 Msa0169330:intron 40.0%
GGAAAGATATTGCTTCAAGC+TGG - chr1_4:52540357-52540376 None:intergenic 40.0%
! ACCATTTTGCAGATTGCTTG+TGG + chr1_4:52540465-52540484 Msa0169330:intron 40.0%
TCCACAAGCAATCTGCAAAA+TGG - chr1_4:52540469-52540488 None:intergenic 40.0%
! ATTTTGCAGATTGCTTGTGG+AGG + chr1_4:52540468-52540487 Msa0169330:intron 40.0%
! TTTTGCAGATTGCTTGTGGA+GGG + chr1_4:52540469-52540488 Msa0169330:intron 40.0%
ACTTGTCTGCTTGATCAAAC+TGG + chr1_4:52540507-52540526 Msa0169330:CDS 40.0%
AGGGAAGTTACCTTGAAATC+TGG - chr1_4:52540573-52540592 None:intergenic 40.0%
GCGAACAAAACTTGAGATCA+TGG - chr1_4:52540639-52540658 None:intergenic 40.0%
TTATGACCTTACATGAGGTG+AGG - chr1_4:52540737-52540756 None:intergenic 40.0%
! ACTAGTTTCTTTGGATTCGC+GGG + chr1_4:52540931-52540950 Msa0169330:three_prime_UTR 40.0%
TGCTAATAACTGATCAGCCT+TGG - chr1_4:52541026-52541045 None:intergenic 40.0%
GGTGGTTAAGTGTGATGACA+TGG - chr1_4:52538297-52538316 None:intergenic 45.0%
TGGAAGGGAAATCAATGACG+GGG - chr1_4:52538370-52538389 None:intergenic 45.0%
GAGCAATGGTATCATAGGCT+TGG - chr1_4:52538502-52538521 None:intergenic 45.0%
! TACTACCAGGCATGATTTGG+AGG - chr1_4:52538550-52538569 None:intergenic 45.0%
TAAAACTGACCCCAAAGCGT+TGG - chr1_4:52538736-52538755 None:intergenic 45.0%
GGACACGGACAACTAATTTG+AGG - chr1_4:52538834-52538853 None:intergenic 45.0%
ATGAAGCACGGATACGGATA+CGG - chr1_4:52538929-52538948 None:intergenic 45.0%
AATGGCTCATCGAATGGTGA+AGG + chr1_4:52539706-52539725 Msa0169330:intron 45.0%
CGAAATTCCCTGCTTAATGC+TGG - chr1_4:52539824-52539843 None:intergenic 45.0%
GGAGCTGGATCAGGTTTATA+AGG - chr1_4:52539848-52539867 None:intergenic 45.0%
AGTGAAAGGACCGAGTCATA+GGG - chr1_4:52540201-52540220 None:intergenic 45.0%
TAGTGAAAGGACCGAGTCAT+AGG - chr1_4:52540202-52540221 None:intergenic 45.0%
CATAAATAAGTGGCCTGCAC+AGG + chr1_4:52540320-52540339 Msa0169330:intron 45.0%
GTCTGCTTGATCAAACTGGA+AGG + chr1_4:52540511-52540530 Msa0169330:CDS 45.0%
!!! GATCTCAAGTTTTGTTCGCG+TGG + chr1_4:52540640-52540659 Msa0169330:exon 45.0%
!!! CGCGTGGACCATTTATTTTG+TGG + chr1_4:52540656-52540675 Msa0169330:three_prime_UTR 45.0%
GAGGAGGTGACATCTACATT+TGG + chr1_4:52540698-52540717 Msa0169330:three_prime_UTR 45.0%
GAGGTGACATCTACATTTGG+AGG + chr1_4:52540701-52540720 Msa0169330:three_prime_UTR 45.0%
ACGCGCAATATCGTGTCAAA+CGG - chr1_4:52540993-52541012 None:intergenic 45.0%
TGCGCGTGTTAAGATTTCCA+AGG + chr1_4:52541006-52541025 Msa0169330:three_prime_UTR 45.0%
! GCTTTTGCGGAAGAGAGCAA+TGG - chr1_4:52538254-52538273 None:intergenic 50.0%
AGTGTGATGACATGGTGCGT+GGG - chr1_4:52538289-52538308 None:intergenic 50.0%
AAGTGTGATGACATGGTGCG+TGG - chr1_4:52538290-52538309 None:intergenic 50.0%
! AGGGAAATCAATGACGGGGA+CGG - chr1_4:52538366-52538385 None:intergenic 50.0%
! GCCGAGTACTGCTTTGTACA+TGG - chr1_4:52538390-52538409 None:intergenic 50.0%
! ATCGATTCCAGCAGGGTTTG+AGG - chr1_4:52538438-52538457 None:intergenic 50.0%
TAGGCTTGGCGTTGTTGATG+TGG - chr1_4:52538488-52538507 None:intergenic 50.0%
GATCACCTCCAAATCATGCC+TGG + chr1_4:52538542-52538561 Msa0169330:CDS 50.0%
! CAGATATGCAGTAGTGGAGC+TGG - chr1_4:52539863-52539882 None:intergenic 50.0%
CGCGCAATATCGTGTCAAAC+GGG - chr1_4:52540992-52541011 None:intergenic 50.0%
ACATGGTGCGTGGGAAGAGA+AGG - chr1_4:52538280-52538299 None:intergenic 55.0%
CCATGTCGAAAACGACGCCA+CGG - chr1_4:52538331-52538350 None:intergenic 55.0%
!! GGCGTCGTTTTCGACATGGA+CGG + chr1_4:52538332-52538351 Msa0169330:CDS 55.0%
GTCAAAGCCTCAAACCCTGC+TGG + chr1_4:52538428-52538447 Msa0169330:CDS 55.0%
!! AACTGACCCCAAAGCGTTGG+TGG - chr1_4:52538733-52538752 None:intergenic 55.0%
!! ATGTGTGTCGGTGTCGGACA+CGG - chr1_4:52538849-52538868 None:intergenic 55.0%
! TGCAGTAGTGGAGCTGGATC+AGG - chr1_4:52539857-52539876 None:intergenic 55.0%
GGGTTGAAGTTACCCTGTGC+AGG - chr1_4:52540336-52540355 None:intergenic 55.0%
TGTCGAAAACGACGCCACGG+AGG - chr1_4:52538328-52538347 None:intergenic 60.0%
!! CCGTGGCGTCGTTTTCGACA+TGG + chr1_4:52538328-52538347 Msa0169330:CDS 60.0%
ATTGCTTGTGGAGGGCGAGC+AGG + chr1_4:52540477-52540496 Msa0169330:CDS 60.0%
ACCACCAAAACGCGCCTCCG+TGG + chr1_4:52538311-52538330 Msa0169330:CDS 65.0%
!! GCCACGGAGGCGCGTTTTGG+TGG - chr1_4:52538315-52538334 None:intergenic 70.0%
!! GACGCCACGGAGGCGCGTTT+TGG - chr1_4:52538318-52538337 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 52538112 52541059 52538112 ID=Msa0169330;Name=Msa0169330
chr1_4 mRNA 52538112 52541059 52538112 ID=Msa0169330-mRNA-1;Parent=Msa0169330;Name=Msa0169330-mRNA-1;_AED=0.05;_eAED=0.05;_QI=136|1|1|1|1|1|4|418|239
chr1_4 exon 52538112 52538563 52538112 ID=Msa0169330-mRNA-1:exon:15565;Parent=Msa0169330-mRNA-1
chr1_4 exon 52538642 52538745 52538642 ID=Msa0169330-mRNA-1:exon:15566;Parent=Msa0169330-mRNA-1
chr1_4 exon 52539809 52539943 52539809 ID=Msa0169330-mRNA-1:exon:15567;Parent=Msa0169330-mRNA-1
chr1_4 exon 52540477 52541059 52540477 ID=Msa0169330-mRNA-1:exon:15568;Parent=Msa0169330-mRNA-1
chr1_4 five_prime_UTR 52538112 52538247 52538112 ID=Msa0169330-mRNA-1:five_prime_utr;Parent=Msa0169330-mRNA-1
chr1_4 CDS 52538248 52538563 52538248 ID=Msa0169330-mRNA-1:cds;Parent=Msa0169330-mRNA-1
chr1_4 CDS 52538642 52538745 52538642 ID=Msa0169330-mRNA-1:cds;Parent=Msa0169330-mRNA-1
chr1_4 CDS 52539809 52539943 52539809 ID=Msa0169330-mRNA-1:cds;Parent=Msa0169330-mRNA-1
chr1_4 CDS 52540477 52540641 52540477 ID=Msa0169330-mRNA-1:cds;Parent=Msa0169330-mRNA-1
chr1_4 three_prime_UTR 52540642 52541059 52540642 ID=Msa0169330-mRNA-1:three_prime_utr;Parent=Msa0169330-mRNA-1
Gene Sequence

>Msa0169330

ATGCCATTGCTCTCTTCCGCAAAAGCTTTCCTTCTCTTCCCACGCACCATGTCATCACACTTAACCACCAAAACGCGCCTCCGTGGCGTCGTTTTCGACATGGACGGAACTCTCACCGTCCCCGTCATTGATTTCCCTTCCATGTACAAAGCAGTACTCGGCGACGATGAGTATCTACGCGTCAAAGCCTCAAACCCTGCTGGAATCGATATCTTGAAACTCATTGATCACTGGTCTCCACATCAACAACGCCAAGCCTATGATACCATTGCTCATTTTGAAAAACAGGCTCTCGATCACCTCCAAATCATGCCTGGTGCTTCTGAGCTTTGTAATGTTCTTGATTCAAAGAAAATTAGGAGGGGTTTGATTACAAGGAATATGAAATCTGCTGTTGATTTATTCCACCAACGCTTTGGGATTACATTTTCTCCAGCATTAAGCAGGGAATTTCGTCCTTATAAACCTGATCCAGCTCCACTACTGCATATCTGTTCTCTTTGGGAAGTTCAACCAAATGAAGTAGTAATGGTCGGGGATAGCCTTAAAGATGATATTGCTTGTGGAGGGCGAGCAGGAGCACATACTTGTCTGCTTGATCAAACTGGAAGGTATGATTCTCCCGAATATGCTAATGTCGATTTCAAACCAGATTTCAAGGTAACTTCCCTCTCTGAAGTTTACTCAATTCTTGAGACAAATTTTGAATTGGCACCATGA

Protein sequence

>Msa0169330

MPLLSSAKAFLLFPRTMSSHLTTKTRLRGVVFDMDGTLTVPVIDFPSMYKAVLGDDEYLRVKASNPAGIDILKLIDHWSPHQQRQAYDTIAHFEKQALDHLQIMPGASELCNVLDSKKIRRGLITRNMKSAVDLFHQRFGITFSPALSREFRPYKPDPAPLLHICSLWEVQPNEVVMVGDSLKDDIACGGRAGAHTCLLDQTGRYDSPEYANVDFKPDFKVTSLSEVYSILETNFELAP*