AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0524080


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0524080 MtrunA17_Chr4g0036091 78.686 563 98 7 1 558 1 546 0.0 868
Msa0524080 MtrunA17_Chr3g0145351 83.554 377 20 2 170 546 1 335 0.0 616
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0524080 AT4G34740.1 83.811 488 76 2 72 558 68 553 0.0 841
Msa0524080 AT2G16570.1 84.375 480 74 1 79 558 80 558 0.0 837
Msa0524080 AT4G38880.1 67.614 528 158 5 12 537 9 525 0.0 721

Find 133 sgRNAs with CRISPR-Local

Find 322 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGCCCAATTCTGTTGTATT+TGG 0.096765 3_4:-77542517 Msa0524080:CDS
TTTCAGCTAATTCAGAAATT+TGG 0.154815 3_4:-77541645 Msa0524080:three_prime_UTR
ATTATTGGGTCTTGTTATTA+TGG 0.169325 3_4:-77542118 Msa0524080:CDS
ATCTTCATCTCTTTCTGATT+TGG 0.180718 3_4:+77541839 None:intergenic
GTTATAGCTGTTCCTGATTC+TGG 0.192514 3_4:-77542421 Msa0524080:CDS
TCACAGAAGATTAGAGATTT+TGG 0.203480 3_4:-77542301 Msa0524080:CDS
ATTGCATGTCCACCAATTAT+TGG 0.249163 3_4:-77542133 Msa0524080:CDS
AAGATTGTTTGGTGAAATAT+TGG 0.274673 3_4:-77542473 Msa0524080:CDS
GGTTTATCCTGGTGAAATTA+TGG 0.280156 3_4:-77542626 Msa0524080:CDS
TCAACAATTCTCGCTATAAA+AGG 0.280350 3_4:+77542829 None:intergenic
GATGAGTGTGGCTGAGATTA+AGG 0.284060 3_4:-77542056 Msa0524080:CDS
GTGAATGGGAATGTGTTGTT+AGG 0.284914 3_4:+77543321 None:intergenic
TAATTCAGAAATTTGGATTC+TGG 0.286663 3_4:-77541638 Msa0524080:three_prime_UTR
TCTTCATCTCTTTCTGATTT+GGG 0.291726 3_4:+77541840 None:intergenic
AGAAATGAACTTGAAGAATC+TGG 0.293200 3_4:-77542919 Msa0524080:CDS
TAATAACAAGACCCAATAAT+TGG 0.293975 3_4:+77542121 None:intergenic
TTTCCCAAATACAACAGAAT+TGG 0.301159 3_4:+77542513 None:intergenic
TAGCAGAGACGAGAGGCTTC+TGG 0.302805 3_4:+77543225 None:intergenic
GATAAATCTTATATAAGATT+AGG 0.307460 3_4:-77541537 Msa0524080:three_prime_UTR
GCTGAGATTAAGGAATTTAT+TGG 0.318852 3_4:-77542046 Msa0524080:CDS
CCGGTTCGTGCTGTTCTTGA+AGG 0.320056 3_4:-77542259 Msa0524080:CDS
TGCCCAATTCTGTTGTATTT+GGG 0.324405 3_4:-77542516 Msa0524080:CDS
TTCTGTTATGCTTGTTTCAC+TGG 0.324666 3_4:-77541956 Msa0524080:CDS
TGTGTTGTTAGGGTTGTTAT+TGG 0.329634 3_4:+77543332 None:intergenic
TTGCATGTCCACCAATTATT+GGG 0.345820 3_4:-77542132 Msa0524080:CDS
ATAAATCTTATATAAGATTA+GGG 0.347188 3_4:-77541536 Msa0524080:three_prime_UTR
AGAATGAGAAGGTGAGGTTT+TGG 0.352465 3_4:+77543380 None:intergenic
CAGAAAGAGATGAAGATTGT+TGG 0.354775 3_4:-77541833 Msa0524080:CDS
AACAAATAGGTATTAAGAAT+TGG 0.359891 3_4:+77541609 None:intergenic
CTGAAGAGTTGATATCTAAT+AGG 0.367246 3_4:-77542078 Msa0524080:CDS
GTTGCTGTCAGAGATCCTTT+TGG 0.373947 3_4:-77542748 Msa0524080:CDS
TTTGTTGCAGGTTACCGTTT+TGG 0.378465 3_4:-77542991 Msa0524080:CDS
GTATCTTAAGATCTGATGTT+TGG 0.378470 3_4:-77541582 Msa0524080:three_prime_UTR
TTAAGATACGACCAACAAAT+AGG 0.396757 3_4:+77541596 None:intergenic
TTTAGGTTTGTTGAGGGAAG+AGG 0.397497 3_4:+77543488 None:intergenic
TGACCAATGGCTAAGTTTCC+AGG 0.397946 3_4:+77543063 None:intergenic
TTAAGTTCAGTAGGTTCAAC+AGG 0.399551 3_4:+77541926 None:intergenic
TGGTTTGAAGGACTTTGTTA+TGG 0.401995 3_4:+77543142 None:intergenic
TTCCCAAATACAACAGAATT+GGG 0.403442 3_4:+77542514 None:intergenic
GTGCTGTTCTTGAAGGGAAA+AGG 0.407251 3_4:-77542252 Msa0524080:CDS
TATGAATCAAGAAGATTGTT+TGG 0.412509 3_4:-77542484 Msa0524080:CDS
CTAATCAAACCCTGTTGAAA+AGG 0.417806 3_4:+77542358 None:intergenic
TCTGGTGTTGTTGCTGCACT+TGG 0.419203 3_4:-77542403 Msa0524080:CDS
AATTCTTAATACCTATTTGT+TGG 0.419292 3_4:-77541607 Msa0524080:three_prime_UTR
CGTGAAGAATGTGGCGTTGT+TGG 0.421219 3_4:-77543261 Msa0524080:CDS
AAAGTCCTTCAAACCATTAC+CGG 0.424078 3_4:-77543135 Msa0524080:CDS
TGAATGGGAATGTGTTGTTA+GGG 0.428275 3_4:+77543322 None:intergenic
TATAACTTAGTACTTAGTAC+TGG 0.428476 3_4:-77541713 Msa0524080:three_prime_UTR
AAGGACTTTGTTATGGTTGA+CGG 0.431778 3_4:+77543149 None:intergenic
AGAAATTTGGATTCTGGAGC+TGG 0.437969 3_4:-77541632 Msa0524080:three_prime_UTR
AGAGAGTTTAGGTTTGTTGA+GGG 0.448031 3_4:+77543482 None:intergenic
GCAGCAACAACACCAGAATC+AGG 0.452380 3_4:+77542409 None:intergenic
TCCGTTGGTGTTGCTCATAA+TGG 0.454130 3_4:-77542967 Msa0524080:CDS
CTTAAAGTTAAGAAGAGGAT+TGG 0.456503 3_4:-77541908 Msa0524080:CDS
ATAACTACATCACAATCAAC+AGG 0.456568 3_4:+77542439 None:intergenic
TTATTACTATTATTATGAAA+AGG 0.462304 3_4:-77541473 Msa0524080:three_prime_UTR
ATTGGTGGTGATTCTGTGGA+TGG 0.464638 3_4:-77541890 Msa0524080:CDS
TAGCGGCGATGTTTGTGAAT+GGG 0.471858 3_4:+77543307 None:intergenic
AACGAGGCCAACGCCGGTAA+TGG 0.479513 3_4:+77543122 None:intergenic
ACAAAACTCCGTCAATTACC+TGG 0.480200 3_4:-77543081 Msa0524080:CDS
GGATAGTTTGAAGAAGTTGT+TGG 0.482382 3_4:-77541996 Msa0524080:CDS
TCCTGGTGAAATTATGGTTG+TGG 0.482820 3_4:-77542620 Msa0524080:CDS
CTTGGTTATGCTGCAAAAGC+TGG 0.485841 3_4:-77542385 Msa0524080:CDS
TCTGTGGATGGTGGATTGAA+TGG 0.487961 3_4:-77541878 Msa0524080:CDS
TGCTGTTCTTGAAGGGAAAA+GGG 0.491594 3_4:-77542251 Msa0524080:CDS
GTTGAGGGAAGAGGAAGAGA+GGG 0.493244 3_4:+77543497 None:intergenic
CCTTCAAGAACAGCACGAAC+CGG 0.494340 3_4:+77542259 None:intergenic
TTCTTCAAGTTCATTTCTCA+AGG 0.496817 3_4:+77542924 None:intergenic
AAGAGAGTTTAGGTTTGTTG+AGG 0.497209 3_4:+77543481 None:intergenic
GATAGTTTGAAGAAGTTGTT+GGG 0.498781 3_4:-77541995 Msa0524080:CDS
TGTTGAGGGAAGAGGAAGAG+AGG 0.501159 3_4:+77543496 None:intergenic
GATATCAACTCTTCAGAGCT+AGG 0.501424 3_4:+77542085 None:intergenic
GGTGGTGATTCTGTGGATGG+TGG 0.506017 3_4:-77541887 Msa0524080:CDS
TTCTTAACTTTAAGTTCAGT+AGG 0.508401 3_4:+77541917 None:intergenic
AACAAGTGTTGGCGGTTGAA+TGG 0.508842 3_4:+77543439 None:intergenic
CGGTTCGTGCTGTTCTTGAA+GGG 0.509292 3_4:-77542258 Msa0524080:CDS
CTAAGTTTCCAGGTAATTGA+CGG 0.513521 3_4:+77543073 None:intergenic
AAACGGTAACCTGCAACAAA+AGG 0.514148 3_4:+77542994 None:intergenic
TCTGTTATGCTTGTTTCACT+GGG 0.514410 3_4:-77541955 Msa0524080:CDS
TGTGGCGTTGTTGGTATCTA+CGG 0.518381 3_4:-77543252 Msa0524080:CDS
CAAGTTCATTTCTCAAGGAA+CGG 0.518679 3_4:+77542929 None:intergenic
TTCGTCGTGGTCATCATTAG+CGG 0.521295 3_4:+77543290 None:intergenic
CATGTCCGTTATTCAACTGC+AGG 0.521534 3_4:-77543042 Msa0524080:CDS
TATGAAAGAGAGGTTTATCC+TGG 0.522853 3_4:-77542637 Msa0524080:CDS
TTAGCGGCGATGTTTGTGAA+TGG 0.523421 3_4:+77543306 None:intergenic
TTACCTGGAAACTTAGCCAT+TGG 0.524484 3_4:-77543066 Msa0524080:CDS
ACCAAAGGTCGAAAACCAAA+AGG 0.526636 3_4:+77542733 None:intergenic
CAACGCCGGTAATGGTTTGA+AGG 0.528133 3_4:+77543130 None:intergenic
CTTCAAACCATTACCGGCGT+TGG 0.528503 3_4:-77543129 Msa0524080:CDS
GGCGGTTGAATGGTTGAAAG+AGG 0.533941 3_4:+77543449 None:intergenic
TGGGTCTTGTTATTATGGTG+TGG 0.544696 3_4:-77542113 Msa0524080:CDS
AAAGTTAAGAAGAGGATTGG+TGG 0.549648 3_4:-77541905 Msa0524080:CDS
GTGAGGTTGTTAAAAGAAGC+TGG 0.552217 3_4:-77542178 Msa0524080:CDS
CTTCTTCTTCCCATAACCAA+AGG 0.554261 3_4:+77542718 None:intergenic
CTGAACTTAAAGTTAAGAAG+AGG 0.556144 3_4:-77541913 Msa0524080:CDS
CAACACCAACGGAACCAAAA+CGG 0.557562 3_4:+77542977 None:intergenic
GTTGTAAGAATGAGAAGGTG+AGG 0.561350 3_4:+77543374 None:intergenic
ATTGGCCTGCAGTTGAATAA+CGG 0.563701 3_4:+77543037 None:intergenic
TATAGGCACCACATTATACA+AGG 0.565092 3_4:-77541774 Msa0524080:intron
AAATCTCTAATCTTCTGTGA+TGG 0.569057 3_4:+77542304 None:intergenic
TAACAAGACCCAATAATTGG+TGG 0.569913 3_4:+77542124 None:intergenic
TGTGAAGTTGAAGCTTTCAC+CGG 0.573769 3_4:-77542278 Msa0524080:CDS
CGAAGCTACTTATGAAAGAG+AGG 0.573913 3_4:-77542647 Msa0524080:CDS
TCCACAACCATAATTTCACC+AGG 0.575009 3_4:+77542619 None:intergenic
GAGGATTGGTGGTGATTCTG+TGG 0.576985 3_4:-77541894 Msa0524080:CDS
CACCGTGGTCAAGAAGGTGC+TGG 0.578090 3_4:-77543180 Msa0524080:CDS
CGTTGAAAACTTCGGAAACG+AGG 0.581432 3_4:+77543106 None:intergenic
TGTTGATGATTCAATTGTGA+GGG 0.584102 3_4:-77542221 Msa0524080:CDS
TCTTGAAGGGAAAAGGGTCG+TGG 0.584140 3_4:-77542245 Msa0524080:CDS
CTTCAACACCGTGGTCAAGA+AGG 0.588529 3_4:-77543186 Msa0524080:CDS
GTTATGGGAAGAAGAAGTAA+CGG 0.598346 3_4:-77542712 Msa0524080:CDS
TTGATTAGGTCACACTATGT+TGG 0.599304 3_4:-77542343 Msa0524080:CDS
TTGTTGATGATTCAATTGTG+AGG 0.602266 3_4:-77542222 Msa0524080:CDS
TTCGGAAACGAGGCCAACGC+CGG 0.614737 3_4:+77543116 None:intergenic
GAAAAGCCTCGTGAAGAATG+TGG 0.614821 3_4:-77543270 Msa0524080:CDS
ATTATGGTTGTGGATAAAAG+TGG 0.619860 3_4:-77542610 Msa0524080:CDS
TTGTAGTTGTAAGAATGAGA+AGG 0.631544 3_4:+77543369 None:intergenic
ACCATTATGAGCAACACCAA+CGG 0.634502 3_4:+77542966 None:intergenic
ATAACTTAGTACTTAGTACT+GGG 0.635802 3_4:-77541712 Msa0524080:three_prime_UTR
GTTGAAGTGCATGGAGAGCG+AGG 0.641710 3_4:+77543202 None:intergenic
CTACATCATCTAAAATTGTG+AGG 0.646524 3_4:-77542195 Msa0524080:CDS
TGAATAACGGACATGACCAA+TGG 0.652687 3_4:+77543050 None:intergenic
GGATGGTGGATTGAATGGAT+CGG 0.653459 3_4:-77541873 Msa0524080:CDS
AACTTCTTCAAACTATCCAT+AGG 0.662605 3_4:+77542001 None:intergenic
AAGTTAAACCTTGTATAATG+TGG 0.663851 3_4:+77541766 None:intergenic
GTTGATGATTCAATTGTGAG+GGG 0.670952 3_4:-77542220 Msa0524080:CDS
AGCGAGGTAGCAGAGACGAG+AGG 0.672004 3_4:+77543218 None:intergenic
TACCAGCACCTTCTTGACCA+CGG 0.675912 3_4:+77543178 None:intergenic
GTGCTAAAGAAGTTCACATG+AGG 0.680748 3_4:-77542156 Msa0524080:CDS
ACAACGCCACATTCTTCACG+AGG 0.684608 3_4:+77543264 None:intergenic
GACCACGGTGTTGAAGTGCA+TGG 0.689058 3_4:+77543193 None:intergenic
GATATCTAATAGGATGAGTG+TGG 0.701334 3_4:-77542068 Msa0524080:CDS
CTCCATGCACTTCAACACCG+TGG 0.731810 3_4:-77543195 Msa0524080:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGTATTTTTTTTTTTGATT+TGG + chr3_4:77543221-77543240 None:intergenic 10.0%
!! AAATCAAAAAAAAAAATACA+AGG - chr3_4:77543220-77543239 Msa0524080:CDS 10.0%
!! ATAAATCTTATATAAGATTA+GGG - chr3_4:77543420-77543439 Msa0524080:CDS 10.0%
!!! GATTTATTTTATATTGTTTT+TGG - chr3_4:77543444-77543463 Msa0524080:CDS 10.0%
!! TTATTACTATTATTATGAAA+AGG - chr3_4:77543483-77543502 Msa0524080:CDS 10.0%
!!! TTGTATTTTTTTTTTTGATT+TGG + chr3_4:77543221-77543240 None:intergenic 10.0%
!! AAATCAAAAAAAAAAATACA+AGG - chr3_4:77543220-77543239 Msa0524080:CDS 10.0%
!! ATAAATCTTATATAAGATTA+GGG - chr3_4:77543420-77543439 Msa0524080:CDS 10.0%
!!! GATTTATTTTATATTGTTTT+TGG - chr3_4:77543444-77543463 Msa0524080:CDS 10.0%
!! TTATTACTATTATTATGAAA+AGG - chr3_4:77543483-77543502 Msa0524080:CDS 10.0%
!! GATAAATCTTATATAAGATT+AGG - chr3_4:77543419-77543438 Msa0524080:CDS 15.0%
!! GATAAATCTTATATAAGATT+AGG - chr3_4:77543419-77543438 Msa0524080:CDS 15.0%
!!! AAAATACATTGTTTTTGTTC+TGG + chr3_4:77542400-77542419 None:intergenic 20.0%
!!! TGTGTAATTTTGTAGTATAT+AGG - chr3_4:77543165-77543184 Msa0524080:CDS 20.0%
!! AACAAATAGGTATTAAGAAT+TGG + chr3_4:77543350-77543369 None:intergenic 20.0%
!! AATTCTTAATACCTATTTGT+TGG - chr3_4:77543349-77543368 Msa0524080:CDS 20.0%
!!! AAAATACATTGTTTTTGTTC+TGG + chr3_4:77542400-77542419 None:intergenic 20.0%
!!! TGTGTAATTTTGTAGTATAT+AGG - chr3_4:77543165-77543184 Msa0524080:CDS 20.0%
!! AACAAATAGGTATTAAGAAT+TGG + chr3_4:77543350-77543369 None:intergenic 20.0%
!! AATTCTTAATACCTATTTGT+TGG - chr3_4:77543349-77543368 Msa0524080:CDS 20.0%
! TATGAATCAAGAAGATTGTT+TGG - chr3_4:77542472-77542491 Msa0524080:CDS 25.0%
!! AAGATTGTTTGGTGAAATAT+TGG - chr3_4:77542483-77542502 Msa0524080:CDS 25.0%
! TAATAACAAGACCCAATAAT+TGG + chr3_4:77542838-77542857 None:intergenic 25.0%
!!! ATTATTGGGTCTTGTTATTA+TGG - chr3_4:77542838-77542857 Msa0524080:CDS 25.0%
!! TTCTTAACTTTAAGTTCAGT+AGG + chr3_4:77543042-77543061 None:intergenic 25.0%
! AAGTTAAACCTTGTATAATG+TGG + chr3_4:77543193-77543212 None:intergenic 25.0%
! TATAACTTAGTACTTAGTAC+TGG - chr3_4:77543243-77543262 Msa0524080:CDS 25.0%
! ATAACTTAGTACTTAGTACT+GGG - chr3_4:77543244-77543263 Msa0524080:CDS 25.0%
! TTTCAGCTAATTCAGAAATT+TGG - chr3_4:77543311-77543330 Msa0524080:CDS 25.0%
! TAATTCAGAAATTTGGATTC+TGG - chr3_4:77543318-77543337 Msa0524080:CDS 25.0%
!!! TATATTGTTTTTGGAACTTC+AGG - chr3_4:77543453-77543472 Msa0524080:CDS 25.0%
! TGTATATCGAAAAACAGAAA+CGG + chr3_4:77543522-77543541 None:intergenic 25.0%
! TATGAATCAAGAAGATTGTT+TGG - chr3_4:77542472-77542491 Msa0524080:CDS 25.0%
!! AAGATTGTTTGGTGAAATAT+TGG - chr3_4:77542483-77542502 Msa0524080:CDS 25.0%
! TAATAACAAGACCCAATAAT+TGG + chr3_4:77542838-77542857 None:intergenic 25.0%
!!! ATTATTGGGTCTTGTTATTA+TGG - chr3_4:77542838-77542857 Msa0524080:CDS 25.0%
!! TTCTTAACTTTAAGTTCAGT+AGG + chr3_4:77543042-77543061 None:intergenic 25.0%
! AAGTTAAACCTTGTATAATG+TGG + chr3_4:77543193-77543212 None:intergenic 25.0%
! TATAACTTAGTACTTAGTAC+TGG - chr3_4:77543243-77543262 Msa0524080:CDS 25.0%
! ATAACTTAGTACTTAGTACT+GGG - chr3_4:77543244-77543263 Msa0524080:CDS 25.0%
! TTTCAGCTAATTCAGAAATT+TGG - chr3_4:77543311-77543330 Msa0524080:CDS 25.0%
! TAATTCAGAAATTTGGATTC+TGG - chr3_4:77543318-77543337 Msa0524080:CDS 25.0%
!!! TATATTGTTTTTGGAACTTC+AGG - chr3_4:77543453-77543472 Msa0524080:CDS 25.0%
! TGTATATCGAAAAACAGAAA+CGG + chr3_4:77543522-77543541 None:intergenic 25.0%
GAAGAAGAAAAAGAGAGTTT+AGG + chr3_4:77541488-77541507 None:intergenic 30.0%
TTGTAGTTGTAAGAATGAGA+AGG + chr3_4:77541590-77541609 None:intergenic 30.0%
!! TTTTGTGTCGTTGAAAACTT+CGG + chr3_4:77541861-77541880 None:intergenic 30.0%
! TTCTTCAAGTTCATTTCTCA+AGG + chr3_4:77542035-77542054 None:intergenic 30.0%
AGAAATGAACTTGAAGAATC+TGG - chr3_4:77542037-77542056 Msa0524080:CDS 30.0%
TCAACAATTCTCGCTATAAA+AGG + chr3_4:77542130-77542149 None:intergenic 30.0%
ATTATGGTTGTGGATAAAAG+TGG - chr3_4:77542346-77542365 Msa0524080:CDS 30.0%
TTCCCAAATACAACAGAATT+GGG + chr3_4:77542445-77542464 None:intergenic 30.0%
TTTCCCAAATACAACAGAAT+TGG + chr3_4:77542446-77542465 None:intergenic 30.0%
ATAACTACATCACAATCAAC+AGG + chr3_4:77542520-77542539 None:intergenic 30.0%
AAATCTCTAATCTTCTGTGA+TGG + chr3_4:77542655-77542674 None:intergenic 30.0%
! TCACAGAAGATTAGAGATTT+TGG - chr3_4:77542655-77542674 Msa0524080:CDS 30.0%
!! TTGTTGATGATTCAATTGTG+AGG - chr3_4:77542734-77542753 Msa0524080:CDS 30.0%
!! TGTTGATGATTCAATTGTGA+GGG - chr3_4:77542735-77542754 Msa0524080:CDS 30.0%
! CTACATCATCTAAAATTGTG+AGG - chr3_4:77542761-77542780 Msa0524080:CDS 30.0%
!! CTGAAGAGTTGATATCTAAT+AGG - chr3_4:77542878-77542897 Msa0524080:CDS 30.0%
GCTGAGATTAAGGAATTTAT+TGG - chr3_4:77542910-77542929 Msa0524080:CDS 30.0%
AACTTCTTCAAACTATCCAT+AGG + chr3_4:77542958-77542977 None:intergenic 30.0%
GATAGTTTGAAGAAGTTGTT+GGG - chr3_4:77542961-77542980 Msa0524080:CDS 30.0%
CTGAACTTAAAGTTAAGAAG+AGG - chr3_4:77543043-77543062 Msa0524080:CDS 30.0%
CTTAAAGTTAAGAAGAGGAT+TGG - chr3_4:77543048-77543067 Msa0524080:CDS 30.0%
TCTTCATCTCTTTCTGATTT+GGG + chr3_4:77543119-77543138 None:intergenic 30.0%
ATCTTCATCTCTTTCTGATT+TGG + chr3_4:77543120-77543139 None:intergenic 30.0%
TTAAGATACGACCAACAAAT+AGG + chr3_4:77543363-77543382 None:intergenic 30.0%
GTATCTTAAGATCTGATGTT+TGG - chr3_4:77543374-77543393 Msa0524080:CDS 30.0%
GAAGAAGAAAAAGAGAGTTT+AGG + chr3_4:77541488-77541507 None:intergenic 30.0%
TTGTAGTTGTAAGAATGAGA+AGG + chr3_4:77541590-77541609 None:intergenic 30.0%
!! TTTTGTGTCGTTGAAAACTT+CGG + chr3_4:77541861-77541880 None:intergenic 30.0%
! TTCTTCAAGTTCATTTCTCA+AGG + chr3_4:77542035-77542054 None:intergenic 30.0%
AGAAATGAACTTGAAGAATC+TGG - chr3_4:77542037-77542056 Msa0524080:CDS 30.0%
TCAACAATTCTCGCTATAAA+AGG + chr3_4:77542130-77542149 None:intergenic 30.0%
ATTATGGTTGTGGATAAAAG+TGG - chr3_4:77542346-77542365 Msa0524080:CDS 30.0%
TTCCCAAATACAACAGAATT+GGG + chr3_4:77542445-77542464 None:intergenic 30.0%
TTTCCCAAATACAACAGAAT+TGG + chr3_4:77542446-77542465 None:intergenic 30.0%
ATAACTACATCACAATCAAC+AGG + chr3_4:77542520-77542539 None:intergenic 30.0%
AAATCTCTAATCTTCTGTGA+TGG + chr3_4:77542655-77542674 None:intergenic 30.0%
! TCACAGAAGATTAGAGATTT+TGG - chr3_4:77542655-77542674 Msa0524080:CDS 30.0%
!! TTGTTGATGATTCAATTGTG+AGG - chr3_4:77542734-77542753 Msa0524080:CDS 30.0%
!! TGTTGATGATTCAATTGTGA+GGG - chr3_4:77542735-77542754 Msa0524080:CDS 30.0%
! CTACATCATCTAAAATTGTG+AGG - chr3_4:77542761-77542780 Msa0524080:CDS 30.0%
!! CTGAAGAGTTGATATCTAAT+AGG - chr3_4:77542878-77542897 Msa0524080:CDS 30.0%
GCTGAGATTAAGGAATTTAT+TGG - chr3_4:77542910-77542929 Msa0524080:CDS 30.0%
AACTTCTTCAAACTATCCAT+AGG + chr3_4:77542958-77542977 None:intergenic 30.0%
GATAGTTTGAAGAAGTTGTT+GGG - chr3_4:77542961-77542980 Msa0524080:CDS 30.0%
CTGAACTTAAAGTTAAGAAG+AGG - chr3_4:77543043-77543062 Msa0524080:CDS 30.0%
CTTAAAGTTAAGAAGAGGAT+TGG - chr3_4:77543048-77543067 Msa0524080:CDS 30.0%
TCTTCATCTCTTTCTGATTT+GGG + chr3_4:77543119-77543138 None:intergenic 30.0%
ATCTTCATCTCTTTCTGATT+TGG + chr3_4:77543120-77543139 None:intergenic 30.0%
TTAAGATACGACCAACAAAT+AGG + chr3_4:77543363-77543382 None:intergenic 30.0%
GTATCTTAAGATCTGATGTT+TGG - chr3_4:77543374-77543393 Msa0524080:CDS 30.0%
!! AGAGAGTTTAGGTTTGTTGA+GGG + chr3_4:77541477-77541496 None:intergenic 35.0%
!! AAGAGAGTTTAGGTTTGTTG+AGG + chr3_4:77541478-77541497 None:intergenic 35.0%
GTTGTGGAAAAAACAAGTGT+TGG + chr3_4:77541531-77541550 None:intergenic 35.0%
!!! TTGAGAGAAGAGTTTTGTTG+TGG + chr3_4:77541547-77541566 None:intergenic 35.0%
! TGTGTTGTTAGGGTTGTTAT+TGG + chr3_4:77541627-77541646 None:intergenic 35.0%
! TGAATGGGAATGTGTTGTTA+GGG + chr3_4:77541637-77541656 None:intergenic 35.0%
! AAGGACTTTGTTATGGTTGA+CGG + chr3_4:77541810-77541829 None:intergenic 35.0%
TGGTTTGAAGGACTTTGTTA+TGG + chr3_4:77541817-77541836 None:intergenic 35.0%
AAAGTCCTTCAAACCATTAC+CGG - chr3_4:77541821-77541840 Msa0524080:exon 35.0%
CTAAGTTTCCAGGTAATTGA+CGG + chr3_4:77541886-77541905 None:intergenic 35.0%
CAAGTTCATTTCTCAAGGAA+CGG + chr3_4:77542030-77542049 None:intergenic 35.0%
GAAGCGTGTGAAAAAGTTAA+AGG - chr3_4:77542148-77542167 Msa0524080:CDS 35.0%
GTTATGGGAAGAAGAAGTAA+CGG - chr3_4:77542244-77542263 Msa0524080:CDS 35.0%
TATGAAAGAGAGGTTTATCC+TGG - chr3_4:77542319-77542338 Msa0524080:CDS 35.0%
GGTTTATCCTGGTGAAATTA+TGG - chr3_4:77542330-77542349 Msa0524080:CDS 35.0%
TTGCCCAATTCTGTTGTATT+TGG - chr3_4:77542439-77542458 Msa0524080:CDS 35.0%
TGCCCAATTCTGTTGTATTT+GGG - chr3_4:77542440-77542459 Msa0524080:CDS 35.0%
CTAATCAAACCCTGTTGAAA+AGG + chr3_4:77542601-77542620 None:intergenic 35.0%
! CTTTTCAACAGGGTTTGATT+AGG - chr3_4:77542599-77542618 Msa0524080:CDS 35.0%
TTGATTAGGTCACACTATGT+TGG - chr3_4:77542613-77542632 Msa0524080:CDS 35.0%
!! GTTGATGATTCAATTGTGAG+GGG - chr3_4:77542736-77542755 Msa0524080:CDS 35.0%
ATTGCATGTCCACCAATTAT+TGG - chr3_4:77542823-77542842 Msa0524080:CDS 35.0%
TTGCATGTCCACCAATTATT+GGG - chr3_4:77542824-77542843 Msa0524080:CDS 35.0%
TAACAAGACCCAATAATTGG+TGG + chr3_4:77542835-77542854 None:intergenic 35.0%
GATATCTAATAGGATGAGTG+TGG - chr3_4:77542888-77542907 Msa0524080:CDS 35.0%
!! TTCACTTGCTTTTCTACCTA+TGG - chr3_4:77542939-77542958 Msa0524080:CDS 35.0%
GGATAGTTTGAAGAAGTTGT+TGG - chr3_4:77542960-77542979 Msa0524080:CDS 35.0%
TTCTGTTATGCTTGTTTCAC+TGG - chr3_4:77543000-77543019 Msa0524080:CDS 35.0%
TCTGTTATGCTTGTTTCACT+GGG - chr3_4:77543001-77543020 Msa0524080:CDS 35.0%
TTAAGTTCAGTAGGTTCAAC+AGG + chr3_4:77543033-77543052 None:intergenic 35.0%
AAAGTTAAGAAGAGGATTGG+TGG - chr3_4:77543051-77543070 Msa0524080:CDS 35.0%
CAGAAAGAGATGAAGATTGT+TGG - chr3_4:77543123-77543142 Msa0524080:CDS 35.0%
TATAGGCACCACATTATACA+AGG - chr3_4:77543182-77543201 Msa0524080:CDS 35.0%
!! AGAGAGTTTAGGTTTGTTGA+GGG + chr3_4:77541477-77541496 None:intergenic 35.0%
!! AAGAGAGTTTAGGTTTGTTG+AGG + chr3_4:77541478-77541497 None:intergenic 35.0%
GTTGTGGAAAAAACAAGTGT+TGG + chr3_4:77541531-77541550 None:intergenic 35.0%
!!! TTGAGAGAAGAGTTTTGTTG+TGG + chr3_4:77541547-77541566 None:intergenic 35.0%
! TGTGTTGTTAGGGTTGTTAT+TGG + chr3_4:77541627-77541646 None:intergenic 35.0%
! TGAATGGGAATGTGTTGTTA+GGG + chr3_4:77541637-77541656 None:intergenic 35.0%
! AAGGACTTTGTTATGGTTGA+CGG + chr3_4:77541810-77541829 None:intergenic 35.0%
TGGTTTGAAGGACTTTGTTA+TGG + chr3_4:77541817-77541836 None:intergenic 35.0%
AAAGTCCTTCAAACCATTAC+CGG - chr3_4:77541821-77541840 Msa0524080:exon 35.0%
CTAAGTTTCCAGGTAATTGA+CGG + chr3_4:77541886-77541905 None:intergenic 35.0%
CAAGTTCATTTCTCAAGGAA+CGG + chr3_4:77542030-77542049 None:intergenic 35.0%
GAAGCGTGTGAAAAAGTTAA+AGG - chr3_4:77542148-77542167 Msa0524080:CDS 35.0%
GTTATGGGAAGAAGAAGTAA+CGG - chr3_4:77542244-77542263 Msa0524080:CDS 35.0%
TATGAAAGAGAGGTTTATCC+TGG - chr3_4:77542319-77542338 Msa0524080:CDS 35.0%
GGTTTATCCTGGTGAAATTA+TGG - chr3_4:77542330-77542349 Msa0524080:CDS 35.0%
TTGCCCAATTCTGTTGTATT+TGG - chr3_4:77542439-77542458 Msa0524080:CDS 35.0%
TGCCCAATTCTGTTGTATTT+GGG - chr3_4:77542440-77542459 Msa0524080:CDS 35.0%
CTAATCAAACCCTGTTGAAA+AGG + chr3_4:77542601-77542620 None:intergenic 35.0%
! CTTTTCAACAGGGTTTGATT+AGG - chr3_4:77542599-77542618 Msa0524080:CDS 35.0%
TTGATTAGGTCACACTATGT+TGG - chr3_4:77542613-77542632 Msa0524080:CDS 35.0%
!! GTTGATGATTCAATTGTGAG+GGG - chr3_4:77542736-77542755 Msa0524080:CDS 35.0%
ATTGCATGTCCACCAATTAT+TGG - chr3_4:77542823-77542842 Msa0524080:CDS 35.0%
TTGCATGTCCACCAATTATT+GGG - chr3_4:77542824-77542843 Msa0524080:CDS 35.0%
TAACAAGACCCAATAATTGG+TGG + chr3_4:77542835-77542854 None:intergenic 35.0%
GATATCTAATAGGATGAGTG+TGG - chr3_4:77542888-77542907 Msa0524080:CDS 35.0%
!! TTCACTTGCTTTTCTACCTA+TGG - chr3_4:77542939-77542958 Msa0524080:CDS 35.0%
GGATAGTTTGAAGAAGTTGT+TGG - chr3_4:77542960-77542979 Msa0524080:CDS 35.0%
TTCTGTTATGCTTGTTTCAC+TGG - chr3_4:77543000-77543019 Msa0524080:CDS 35.0%
TCTGTTATGCTTGTTTCACT+GGG - chr3_4:77543001-77543020 Msa0524080:CDS 35.0%
TTAAGTTCAGTAGGTTCAAC+AGG + chr3_4:77543033-77543052 None:intergenic 35.0%
AAAGTTAAGAAGAGGATTGG+TGG - chr3_4:77543051-77543070 Msa0524080:CDS 35.0%
CAGAAAGAGATGAAGATTGT+TGG - chr3_4:77543123-77543142 Msa0524080:CDS 35.0%
TATAGGCACCACATTATACA+AGG - chr3_4:77543182-77543201 Msa0524080:CDS 35.0%
!! TTTAGGTTTGTTGAGGGAAG+AGG + chr3_4:77541471-77541490 None:intergenic 40.0%
!! GTGGAAAAAACAAGTGTTGG+CGG + chr3_4:77541528-77541547 None:intergenic 40.0%
! AATGAGAAGGTGAGGTTTTG+GGG + chr3_4:77541577-77541596 None:intergenic 40.0%
! GAATGAGAAGGTGAGGTTTT+GGG + chr3_4:77541578-77541597 None:intergenic 40.0%
! AGAATGAGAAGGTGAGGTTT+TGG + chr3_4:77541579-77541598 None:intergenic 40.0%
GTTGTAAGAATGAGAAGGTG+AGG + chr3_4:77541585-77541604 None:intergenic 40.0%
! GTGAATGGGAATGTGTTGTT+AGG + chr3_4:77541638-77541657 None:intergenic 40.0%
ACAAAACTCCGTCAATTACC+TGG - chr3_4:77541875-77541894 Msa0524080:CDS 40.0%
TTACCTGGAAACTTAGCCAT+TGG - chr3_4:77541890-77541909 Msa0524080:CDS 40.0%
!! TGAATAACGGACATGACCAA+TGG + chr3_4:77541909-77541928 None:intergenic 40.0%
! ATTGGCCTGCAGTTGAATAA+CGG + chr3_4:77541922-77541941 None:intergenic 40.0%
!! GAACGTTTTTGAGCATGGAT+TGG + chr3_4:77541940-77541959 None:intergenic 40.0%
!! AGGTTGAACGTTTTTGAGCA+TGG + chr3_4:77541945-77541964 None:intergenic 40.0%
! AACGTTCAACCTTTTGTTGC+AGG - chr3_4:77541953-77541972 Msa0524080:CDS 40.0%
AAACGGTAACCTGCAACAAA+AGG + chr3_4:77541965-77541984 None:intergenic 40.0%
! TTTGTTGCAGGTTACCGTTT+TGG - chr3_4:77541965-77541984 Msa0524080:CDS 40.0%
ACCATTATGAGCAACACCAA+CGG + chr3_4:77541993-77542012 None:intergenic 40.0%
!!! TCCTTTTGGTTTTCGACCTT+TGG - chr3_4:77542222-77542241 Msa0524080:CDS 40.0%
ACCAAAGGTCGAAAACCAAA+AGG + chr3_4:77542226-77542245 None:intergenic 40.0%
! TGGTTTTCGACCTTTGGTTA+TGG - chr3_4:77542228-77542247 Msa0524080:CDS 40.0%
! GGTTTTCGACCTTTGGTTAT+GGG - chr3_4:77542229-77542248 Msa0524080:CDS 40.0%
CTTCTTCTTCCCATAACCAA+AGG + chr3_4:77542241-77542260 None:intergenic 40.0%
!!! CGGTTCTGTTGTTTTTGCTT+CGG - chr3_4:77542264-77542283 Msa0524080:CDS 40.0%
CGAAGCTACTTATGAAAGAG+AGG - chr3_4:77542309-77542328 Msa0524080:CDS 40.0%
TCCTGGTGAAATTATGGTTG+TGG - chr3_4:77542336-77542355 Msa0524080:CDS 40.0%
TCCACAACCATAATTTCACC+AGG + chr3_4:77542340-77542359 None:intergenic 40.0%
GTTATAGCTGTTCCTGATTC+TGG - chr3_4:77542535-77542554 Msa0524080:CDS 40.0%
TGTGAAGTTGAAGCTTTCAC+CGG - chr3_4:77542678-77542697 Msa0524080:CDS 40.0%
TGCTGTTCTTGAAGGGAAAA+GGG - chr3_4:77542705-77542724 Msa0524080:CDS 40.0%
GTGAGGTTGTTAAAAGAAGC+TGG - chr3_4:77542778-77542797 Msa0524080:CDS 40.0%
GTGCTAAAGAAGTTCACATG+AGG - chr3_4:77542800-77542819 Msa0524080:CDS 40.0%
!! TGGGTCTTGTTATTATGGTG+TGG - chr3_4:77542843-77542862 Msa0524080:CDS 40.0%
GATATCAACTCTTCAGAGCT+AGG + chr3_4:77542874-77542893 None:intergenic 40.0%
!! AGAAATTTGGATTCTGGAGC+TGG - chr3_4:77543324-77543343 Msa0524080:CDS 40.0%
!! TTTAGGTTTGTTGAGGGAAG+AGG + chr3_4:77541471-77541490 None:intergenic 40.0%
!! GTGGAAAAAACAAGTGTTGG+CGG + chr3_4:77541528-77541547 None:intergenic 40.0%
! AATGAGAAGGTGAGGTTTTG+GGG + chr3_4:77541577-77541596 None:intergenic 40.0%
! GAATGAGAAGGTGAGGTTTT+GGG + chr3_4:77541578-77541597 None:intergenic 40.0%
! AGAATGAGAAGGTGAGGTTT+TGG + chr3_4:77541579-77541598 None:intergenic 40.0%
GTTGTAAGAATGAGAAGGTG+AGG + chr3_4:77541585-77541604 None:intergenic 40.0%
! GTGAATGGGAATGTGTTGTT+AGG + chr3_4:77541638-77541657 None:intergenic 40.0%
ACAAAACTCCGTCAATTACC+TGG - chr3_4:77541875-77541894 Msa0524080:CDS 40.0%
TTACCTGGAAACTTAGCCAT+TGG - chr3_4:77541890-77541909 Msa0524080:CDS 40.0%
!! TGAATAACGGACATGACCAA+TGG + chr3_4:77541909-77541928 None:intergenic 40.0%
! ATTGGCCTGCAGTTGAATAA+CGG + chr3_4:77541922-77541941 None:intergenic 40.0%
!! GAACGTTTTTGAGCATGGAT+TGG + chr3_4:77541940-77541959 None:intergenic 40.0%
!! AGGTTGAACGTTTTTGAGCA+TGG + chr3_4:77541945-77541964 None:intergenic 40.0%
! AACGTTCAACCTTTTGTTGC+AGG - chr3_4:77541953-77541972 Msa0524080:CDS 40.0%
AAACGGTAACCTGCAACAAA+AGG + chr3_4:77541965-77541984 None:intergenic 40.0%
! TTTGTTGCAGGTTACCGTTT+TGG - chr3_4:77541965-77541984 Msa0524080:CDS 40.0%
ACCATTATGAGCAACACCAA+CGG + chr3_4:77541993-77542012 None:intergenic 40.0%
!!! TCCTTTTGGTTTTCGACCTT+TGG - chr3_4:77542222-77542241 Msa0524080:CDS 40.0%
ACCAAAGGTCGAAAACCAAA+AGG + chr3_4:77542226-77542245 None:intergenic 40.0%
! TGGTTTTCGACCTTTGGTTA+TGG - chr3_4:77542228-77542247 Msa0524080:CDS 40.0%
! GGTTTTCGACCTTTGGTTAT+GGG - chr3_4:77542229-77542248 Msa0524080:CDS 40.0%
CTTCTTCTTCCCATAACCAA+AGG + chr3_4:77542241-77542260 None:intergenic 40.0%
!!! CGGTTCTGTTGTTTTTGCTT+CGG - chr3_4:77542264-77542283 Msa0524080:CDS 40.0%
CGAAGCTACTTATGAAAGAG+AGG - chr3_4:77542309-77542328 Msa0524080:CDS 40.0%
TCCTGGTGAAATTATGGTTG+TGG - chr3_4:77542336-77542355 Msa0524080:CDS 40.0%
TCCACAACCATAATTTCACC+AGG + chr3_4:77542340-77542359 None:intergenic 40.0%
GTTATAGCTGTTCCTGATTC+TGG - chr3_4:77542535-77542554 Msa0524080:CDS 40.0%
TGTGAAGTTGAAGCTTTCAC+CGG - chr3_4:77542678-77542697 Msa0524080:CDS 40.0%
TGCTGTTCTTGAAGGGAAAA+GGG - chr3_4:77542705-77542724 Msa0524080:CDS 40.0%
GTGAGGTTGTTAAAAGAAGC+TGG - chr3_4:77542778-77542797 Msa0524080:CDS 40.0%
GTGCTAAAGAAGTTCACATG+AGG - chr3_4:77542800-77542819 Msa0524080:CDS 40.0%
!! TGGGTCTTGTTATTATGGTG+TGG - chr3_4:77542843-77542862 Msa0524080:CDS 40.0%
GATATCAACTCTTCAGAGCT+AGG + chr3_4:77542874-77542893 None:intergenic 40.0%
!! AGAAATTTGGATTCTGGAGC+TGG - chr3_4:77543324-77543343 Msa0524080:CDS 40.0%
!! AACAAGTGTTGGCGGTTGAA+TGG + chr3_4:77541520-77541539 None:intergenic 45.0%
TAGCGGCGATGTTTGTGAAT+GGG + chr3_4:77541652-77541671 None:intergenic 45.0%
TTAGCGGCGATGTTTGTGAA+TGG + chr3_4:77541653-77541672 None:intergenic 45.0%
TTCGTCGTGGTCATCATTAG+CGG + chr3_4:77541669-77541688 None:intergenic 45.0%
GAAAAGCCTCGTGAAGAATG+TGG - chr3_4:77541686-77541705 Msa0524080:three_prime_UTR 45.0%
TGTGGCGTTGTTGGTATCTA+CGG - chr3_4:77541704-77541723 Msa0524080:three_prime_UTR 45.0%
CGTTGAAAACTTCGGAAACG+AGG + chr3_4:77541853-77541872 None:intergenic 45.0%
TGACCAATGGCTAAGTTTCC+AGG + chr3_4:77541896-77541915 None:intergenic 45.0%
CATGTCCGTTATTCAACTGC+AGG - chr3_4:77541914-77541933 Msa0524080:CDS 45.0%
CAACACCAACGGAACCAAAA+CGG + chr3_4:77541982-77542001 None:intergenic 45.0%
!! TCCGTTGGTGTTGCTCATAA+TGG - chr3_4:77541989-77542008 Msa0524080:CDS 45.0%
! GTTGCTGTCAGAGATCCTTT+TGG - chr3_4:77542208-77542227 Msa0524080:CDS 45.0%
CTTGGTTATGCTGCAAAAGC+TGG - chr3_4:77542571-77542590 Msa0524080:CDS 45.0%
! AGCTGGTGTTCCTTTTCAAC+AGG - chr3_4:77542588-77542607 Msa0524080:CDS 45.0%
! GCTGGTGTTCCTTTTCAACA+GGG - chr3_4:77542589-77542608 Msa0524080:CDS 45.0%
! GTGCTGTTCTTGAAGGGAAA+AGG - chr3_4:77542704-77542723 Msa0524080:CDS 45.0%
GATGAGTGTGGCTGAGATTA+AGG - chr3_4:77542900-77542919 Msa0524080:CDS 45.0%
!! ATTGGTGGTGATTCTGTGGA+TGG - chr3_4:77543066-77543085 Msa0524080:CDS 45.0%
!! TCTGTGGATGGTGGATTGAA+TGG - chr3_4:77543078-77543097 Msa0524080:CDS 45.0%
!! GGATGGTGGATTGAATGGAT+CGG - chr3_4:77543083-77543102 Msa0524080:CDS 45.0%
!! AACAAGTGTTGGCGGTTGAA+TGG + chr3_4:77541520-77541539 None:intergenic 45.0%
TAGCGGCGATGTTTGTGAAT+GGG + chr3_4:77541652-77541671 None:intergenic 45.0%
TTAGCGGCGATGTTTGTGAA+TGG + chr3_4:77541653-77541672 None:intergenic 45.0%
TTCGTCGTGGTCATCATTAG+CGG + chr3_4:77541669-77541688 None:intergenic 45.0%
GAAAAGCCTCGTGAAGAATG+TGG - chr3_4:77541686-77541705 Msa0524080:three_prime_UTR 45.0%
TGTGGCGTTGTTGGTATCTA+CGG - chr3_4:77541704-77541723 Msa0524080:three_prime_UTR 45.0%
CGTTGAAAACTTCGGAAACG+AGG + chr3_4:77541853-77541872 None:intergenic 45.0%
TGACCAATGGCTAAGTTTCC+AGG + chr3_4:77541896-77541915 None:intergenic 45.0%
CATGTCCGTTATTCAACTGC+AGG - chr3_4:77541914-77541933 Msa0524080:CDS 45.0%
CAACACCAACGGAACCAAAA+CGG + chr3_4:77541982-77542001 None:intergenic 45.0%
!! TCCGTTGGTGTTGCTCATAA+TGG - chr3_4:77541989-77542008 Msa0524080:CDS 45.0%
! GTTGCTGTCAGAGATCCTTT+TGG - chr3_4:77542208-77542227 Msa0524080:CDS 45.0%
CTTGGTTATGCTGCAAAAGC+TGG - chr3_4:77542571-77542590 Msa0524080:CDS 45.0%
! AGCTGGTGTTCCTTTTCAAC+AGG - chr3_4:77542588-77542607 Msa0524080:CDS 45.0%
! GCTGGTGTTCCTTTTCAACA+GGG - chr3_4:77542589-77542608 Msa0524080:CDS 45.0%
! GTGCTGTTCTTGAAGGGAAA+AGG - chr3_4:77542704-77542723 Msa0524080:CDS 45.0%
GATGAGTGTGGCTGAGATTA+AGG - chr3_4:77542900-77542919 Msa0524080:CDS 45.0%
!! ATTGGTGGTGATTCTGTGGA+TGG - chr3_4:77543066-77543085 Msa0524080:CDS 45.0%
!! TCTGTGGATGGTGGATTGAA+TGG - chr3_4:77543078-77543097 Msa0524080:CDS 45.0%
!! GGATGGTGGATTGAATGGAT+CGG - chr3_4:77543083-77543102 Msa0524080:CDS 45.0%
GTTGAGGGAAGAGGAAGAGA+GGG + chr3_4:77541462-77541481 None:intergenic 50.0%
TGTTGAGGGAAGAGGAAGAG+AGG + chr3_4:77541463-77541482 None:intergenic 50.0%
GGCGGTTGAATGGTTGAAAG+AGG + chr3_4:77541510-77541529 None:intergenic 50.0%
ACAACGCCACATTCTTCACG+AGG + chr3_4:77541695-77541714 None:intergenic 50.0%
CGTGAAGAATGTGGCGTTGT+TGG - chr3_4:77541695-77541714 Msa0524080:three_prime_UTR 50.0%
CTTCAACACCGTGGTCAAGA+AGG - chr3_4:77541770-77541789 Msa0524080:intron 50.0%
TACCAGCACCTTCTTGACCA+CGG + chr3_4:77541781-77541800 None:intergenic 50.0%
! CAACGCCGGTAATGGTTTGA+AGG + chr3_4:77541829-77541848 None:intergenic 50.0%
CTTCAAACCATTACCGGCGT+TGG - chr3_4:77541827-77541846 Msa0524080:CDS 50.0%
!!! GGTTACCGTTTTGGTTCCGT+TGG - chr3_4:77541974-77541993 Msa0524080:CDS 50.0%
GCAGCAACAACACCAGAATC+AGG + chr3_4:77542550-77542569 None:intergenic 50.0%
!! TCTGGTGTTGTTGCTGCACT+TGG - chr3_4:77542553-77542572 Msa0524080:CDS 50.0%
CCTTCAAGAACAGCACGAAC+CGG + chr3_4:77542700-77542719 None:intergenic 50.0%
! CGGTTCGTGCTGTTCTTGAA+GGG - chr3_4:77542698-77542717 Msa0524080:CDS 50.0%
TCTTGAAGGGAAAAGGGTCG+TGG - chr3_4:77542711-77542730 Msa0524080:CDS 50.0%
!! GAGGATTGGTGGTGATTCTG+TGG - chr3_4:77543062-77543081 Msa0524080:CDS 50.0%
GTTGAGGGAAGAGGAAGAGA+GGG + chr3_4:77541462-77541481 None:intergenic 50.0%
TGTTGAGGGAAGAGGAAGAG+AGG + chr3_4:77541463-77541482 None:intergenic 50.0%
GGCGGTTGAATGGTTGAAAG+AGG + chr3_4:77541510-77541529 None:intergenic 50.0%
ACAACGCCACATTCTTCACG+AGG + chr3_4:77541695-77541714 None:intergenic 50.0%
CGTGAAGAATGTGGCGTTGT+TGG - chr3_4:77541695-77541714 Msa0524080:three_prime_UTR 50.0%
CTTCAACACCGTGGTCAAGA+AGG - chr3_4:77541770-77541789 Msa0524080:intron 50.0%
TACCAGCACCTTCTTGACCA+CGG + chr3_4:77541781-77541800 None:intergenic 50.0%
! CAACGCCGGTAATGGTTTGA+AGG + chr3_4:77541829-77541848 None:intergenic 50.0%
CTTCAAACCATTACCGGCGT+TGG - chr3_4:77541827-77541846 Msa0524080:CDS 50.0%
!!! GGTTACCGTTTTGGTTCCGT+TGG - chr3_4:77541974-77541993 Msa0524080:CDS 50.0%
GCAGCAACAACACCAGAATC+AGG + chr3_4:77542550-77542569 None:intergenic 50.0%
!! TCTGGTGTTGTTGCTGCACT+TGG - chr3_4:77542553-77542572 Msa0524080:CDS 50.0%
CCTTCAAGAACAGCACGAAC+CGG + chr3_4:77542700-77542719 None:intergenic 50.0%
! CGGTTCGTGCTGTTCTTGAA+GGG - chr3_4:77542698-77542717 Msa0524080:CDS 50.0%
TCTTGAAGGGAAAAGGGTCG+TGG - chr3_4:77542711-77542730 Msa0524080:CDS 50.0%
!! GAGGATTGGTGGTGATTCTG+TGG - chr3_4:77543062-77543081 Msa0524080:CDS 50.0%
! CTTCACGAGGCTTTTCGTCG+TGG + chr3_4:77541682-77541701 None:intergenic 55.0%
TAGCAGAGACGAGAGGCTTC+TGG + chr3_4:77541734-77541753 None:intergenic 55.0%
GTTGAAGTGCATGGAGAGCG+AGG + chr3_4:77541757-77541776 None:intergenic 55.0%
CTCCATGCACTTCAACACCG+TGG - chr3_4:77541761-77541780 Msa0524080:intron 55.0%
! GACCACGGTGTTGAAGTGCA+TGG + chr3_4:77541766-77541785 None:intergenic 55.0%
! CCGGTTCGTGCTGTTCTTGA+AGG - chr3_4:77542697-77542716 Msa0524080:CDS 55.0%
GGTGGTGATTCTGTGGATGG+TGG - chr3_4:77543069-77543088 Msa0524080:CDS 55.0%
! CTTCACGAGGCTTTTCGTCG+TGG + chr3_4:77541682-77541701 None:intergenic 55.0%
TAGCAGAGACGAGAGGCTTC+TGG + chr3_4:77541734-77541753 None:intergenic 55.0%
GTTGAAGTGCATGGAGAGCG+AGG + chr3_4:77541757-77541776 None:intergenic 55.0%
CTCCATGCACTTCAACACCG+TGG - chr3_4:77541761-77541780 Msa0524080:intron 55.0%
! GACCACGGTGTTGAAGTGCA+TGG + chr3_4:77541766-77541785 None:intergenic 55.0%
! CCGGTTCGTGCTGTTCTTGA+AGG - chr3_4:77542697-77542716 Msa0524080:CDS 55.0%
GGTGGTGATTCTGTGGATGG+TGG - chr3_4:77543069-77543088 Msa0524080:CDS 55.0%
AGCGAGGTAGCAGAGACGAG+AGG + chr3_4:77541741-77541760 None:intergenic 60.0%
! CACCGTGGTCAAGAAGGTGC+TGG - chr3_4:77541776-77541795 Msa0524080:three_prime_UTR 60.0%
AACGAGGCCAACGCCGGTAA+TGG + chr3_4:77541837-77541856 None:intergenic 60.0%
TTCGGAAACGAGGCCAACGC+CGG + chr3_4:77541843-77541862 None:intergenic 60.0%
AGCGAGGTAGCAGAGACGAG+AGG + chr3_4:77541741-77541760 None:intergenic 60.0%
! CACCGTGGTCAAGAAGGTGC+TGG - chr3_4:77541776-77541795 Msa0524080:three_prime_UTR 60.0%
AACGAGGCCAACGCCGGTAA+TGG + chr3_4:77541837-77541856 None:intergenic 60.0%
TTCGGAAACGAGGCCAACGC+CGG + chr3_4:77541843-77541862 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 77541422 77543556 77541422 ID=Msa0524080;Name=Msa0524080
chr3_4 mRNA 77541422 77543556 77541422 ID=Msa0524080-mRNA-1;Parent=Msa0524080;Name=Msa0524080-mRNA-1;_AED=0.00;_eAED=0.00;_QI=15|1|1|1|0|0|2|366|571
chr3_4 exon 77541422 77541736 77541422 ID=Msa0524080-mRNA-1:exon:22755;Parent=Msa0524080-mRNA-1
chr3_4 exon 77541775 77543556 77541775 ID=Msa0524080-mRNA-1:exon:22754;Parent=Msa0524080-mRNA-1
chr3_4 five_prime_UTR 77543542 77543556 77543542 ID=Msa0524080-mRNA-1:five_prime_utr;Parent=Msa0524080-mRNA-1
chr3_4 CDS 77541826 77543541 77541826 ID=Msa0524080-mRNA-1:cds;Parent=Msa0524080-mRNA-1
chr3_4 three_prime_UTR 77541775 77541825 77541775 ID=Msa0524080-mRNA-1:three_prime_utr;Parent=Msa0524080-mRNA-1
chr3_4 three_prime_UTR 77541422 77541736 77541422 ID=Msa0524080-mRNA-1:three_prime_utr;Parent=Msa0524080-mRNA-1
Gene Sequence

>Msa0524080

ATGGCAGCATCAAATCTCTCTACCCTCTCTTCCTCTTCCCTCAACAAACCTAAACTCTCTTTTTCTTCTTCCTCTTTCAACCATTCAACCGCCAACACTTGTTTTTTCCACAACAAAACTCTTCTCTCAAACTCAAACCCCAAAACCTCACCTTCTCATTCTTACAACTACAAAACACTTTCATGCACCAATAACAACCCTAACAACACATTCCCATTCACAAACATCGCCGCTAATGATGACCACGACGAAAAGCCTCGTGAAGAATGTGGCGTTGTTGGTATCTACGGCGATCCAGAAGCCTCTCGTCTCTGCTACCTCGCTCTCCATGCACTTCAACACCGTGGTCAAGAAGGTGCTGGTATCGTTACCGTCAACCATAACAAAGTCCTTCAAACCATTACCGGCGTTGGCCTCGTTTCCGAAGTTTTCAACGACACAAAACTCCGTCAATTACCTGGAAACTTAGCCATTGGTCATGTCCGTTATTCAACTGCAGGCCAATCCATGCTCAAAAACGTTCAACCTTTTGTTGCAGGTTACCGTTTTGGTTCCGTTGGTGTTGCTCATAATGGTAACTTTGTCAATTACCGTTCCTTGAGAAATGAACTTGAAGAATCTGGTTCAATTTTCAACACTACTTCTGATACTGAAGTTTTGCTTCATCTTATTGCAACATCAAATCATAGACCTTTTATAGCGAGAATTGTTGAAGCGTGTGAAAAAGTTAAAGGTGCTTATTCAATTGTGTTTGTTACTGAAGATAAACTTGTTGCTGTCAGAGATCCTTTTGGTTTTCGACCTTTGGTTATGGGAAGAAGAAGTAACGGTTCTGTTGTTTTTGCTTCGGAAACATGTGCACTTGATTTGATCGAAGCTACTTATGAAAGAGAGGTTTATCCTGGTGAAATTATGGTTGTGGATAAAAGTGGTGTTCAATCTCATTGTCTTGTTTCTCATCCAGAACAAAAACAATGTATTTTTGAACATATTTATTTTTCATTGCCCAATTCTGTTGTATTTGGGAAATCTGTTTATGAATCAAGAAGATTGTTTGGTGAAATATTGGCTACTGAGAGTCCTGTTGATTGTGATGTAGTTATAGCTGTTCCTGATTCTGGTGTTGTTGCTGCACTTGGTTATGCTGCAAAAGCTGGTGTTCCTTTTCAACAGGGTTTGATTAGGTCACACTATGTTGGTAGAACTTTCATTGAGCCATCACAGAAGATTAGAGATTTTGGTGTGAAGTTGAAGCTTTCACCGGTTCGTGCTGTTCTTGAAGGGAAAAGGGTCGTGGTTGTTGATGATTCAATTGTGAGGGGAACTACATCATCTAAAATTGTGAGGTTGTTAAAAGAAGCTGGTGCTAAAGAAGTTCACATGAGGATTGCATGTCCACCAATTATTGGGTCTTGTTATTATGGTGTGGATACACCTAGCTCTGAAGAGTTGATATCTAATAGGATGAGTGTGGCTGAGATTAAGGAATTTATTGGTTGTGATTCACTTGCTTTTCTACCTATGGATAGTTTGAAGAAGTTGTTGGGTGATGATTCTTCTAATTTCTGTTATGCTTGTTTCACTGGGAATTATCCTGTTGAACCTACTGAACTTAAAGTTAAGAAGAGGATTGGTGGTGATTCTGTGGATGGTGGATTGAATGGATCGGTTCAAGCTAGCCCAAATCAGAAAGAGATGAAGATTGTTGGAGTCTGA

Protein sequence

>Msa0524080

MAASNLSTLSSSSLNKPKLSFSSSSFNHSTANTCFFHNKTLLSNSNPKTSPSHSYNYKTLSCTNNNPNNTFPFTNIAANDDHDEKPREECGVVGIYGDPEASRLCYLALHALQHRGQEGAGIVTVNHNKVLQTITGVGLVSEVFNDTKLRQLPGNLAIGHVRYSTAGQSMLKNVQPFVAGYRFGSVGVAHNGNFVNYRSLRNELEESGSIFNTTSDTEVLLHLIATSNHRPFIARIVEACEKVKGAYSIVFVTEDKLVAVRDPFGFRPLVMGRRSNGSVVFASETCALDLIEATYEREVYPGEIMVVDKSGVQSHCLVSHPEQKQCIFEHIYFSLPNSVVFGKSVYESRRLFGEILATESPVDCDVVIAVPDSGVVAALGYAAKAGVPFQQGLIRSHYVGRTFIEPSQKIRDFGVKLKLSPVRAVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIACPPIIGSCYYGVDTPSSEELISNRMSVAEIKEFIGCDSLAFLPMDSLKKLLGDDSSNFCYACFTGNYPVEPTELKVKKRIGGDSVDGGLNGSVQASPNQKEMKIVGV*