AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1190730


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1190730 MtrunA17_Chr8g0360031 96.023 176 7 0 1 176 1 176 5.17e-123 343
Msa1190730 MtrunA17_Chr2g0317731 65.556 180 51 5 1 176 1 173 5.82e-76 224
Msa1190730 MtrunA17_Chr3g0125821 58.333 144 60 0 33 176 30 173 2.02e-61 188
Msa1190730 MtrunA17_Chr4g0044731 48.958 96 49 0 81 176 73 168 1.42e-34 119
Msa1190730 MtrunA17_Chr2g0317721 40.000 130 75 1 45 174 16 142 2.85e-32 112
Msa1190730 MtrunA17_Chr2g0317701 45.536 112 60 1 63 173 36 147 7.63e-28 101
Msa1190730 MtrunA17_Chr2g0317711 41.818 110 63 1 67 176 35 143 7.30e-25 94.0
Msa1190730 MtrunA17_Chr1g0201781 36.082 97 62 0 77 173 66 162 8.67e-22 86.7
Msa1190730 MtrunA17_Chr1g0211871 35.780 109 62 2 73 176 70 175 6.10e-21 84.7
Msa1190730 MtrunA17_Chr5g0404831 41.111 90 51 2 87 176 28 115 2.30e-16 71.2
Msa1190730 MtrunA17_Chr2g0317691 45.312 64 35 0 113 176 3 66 2.82e-16 70.1
Msa1190730 MtrunA17_Chr7g0216481 34.343 99 60 4 79 174 35 131 1.11e-15 69.7
Msa1190730 MtrunA17_Chr4g0052481 43.478 69 36 2 96 162 88 155 1.39e-13 65.1
Msa1190730 MtrunA17_Chr5g0438731 40.964 83 48 1 73 154 61 143 1.82e-13 67.4
Msa1190730 MtrunA17_Chr5g0438731 29.323 133 86 4 33 160 148 277 1.20e-12 65.1
Msa1190730 MtrunA17_Chr1g0155721 36.364 88 54 2 87 174 26 111 1.87e-13 63.5
Msa1190730 MtrunA17_Chr3g0142051 35.632 87 54 2 88 174 27 111 7.34e-13 62.0
Msa1190730 MtrunA17_Chr7g0258871 30.303 99 64 2 69 162 71 169 1.18e-12 63.2
Msa1190730 MtrunA17_Chr8g0393201 38.272 81 48 2 92 172 252 330 3.16e-12 63.5
Msa1190730 MtrunA17_Chr2g0287471 40.244 82 49 0 73 154 30 111 6.92e-12 62.8
Msa1190730 MtrunA17_Chr2g0280411 34.483 87 55 2 90 176 32 116 8.67e-12 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1190730 AT3G15360.1 66.142 127 39 2 53 176 66 191 3.60e-60 186
Msa1190730 AT1G03680.1 56.463 147 60 1 30 176 37 179 1.89e-58 181
Msa1190730 AT4G03520.1 55.782 147 65 0 30 176 39 185 8.34e-58 179
Msa1190730 AT2G15570.2 48.515 101 52 0 76 176 72 172 1.99e-34 119
Msa1190730 AT2G15570.1 48.515 101 52 0 76 176 71 171 2.04e-34 119
Msa1190730 AT4G03520.2 70.423 71 21 0 106 176 1 71 2.45e-32 111
Msa1190730 AT1G76760.1 38.144 97 60 0 80 176 72 168 1.86e-22 89.0
Msa1190730 AT1G43560.1 38.144 97 60 0 80 176 67 163 1.71e-21 86.3
Msa1190730 AT1G50320.1 32.847 137 83 3 43 176 46 176 2.49e-19 80.9
Msa1190730 AT3G51030.1 43.333 90 49 2 87 176 26 113 1.05e-16 72.4
Msa1190730 AT1G19730.1 37.500 88 54 1 87 174 26 112 5.93e-16 70.5
Msa1190730 AT4G12170.1 37.634 93 58 0 73 165 51 143 1.50e-15 70.5
Msa1190730 AT1G52990.1 33.043 115 64 3 74 176 200 313 3.42e-15 72.0
Msa1190730 AT5G42980.1 34.091 88 56 2 87 174 25 110 1.56e-14 67.0
Msa1190730 AT5G39950.1 35.000 100 60 3 79 175 34 131 1.64e-14 67.0
Msa1190730 AT2G35010.2 34.783 115 64 4 50 162 75 180 2.08e-14 68.2
Msa1190730 AT2G35010.1 34.783 115 64 4 50 162 75 180 2.08e-14 68.2
Msa1190730 AT3G54960.2 33.981 103 67 1 72 174 100 201 1.38e-13 68.2
Msa1190730 AT3G54960.1 33.981 103 67 1 72 174 100 201 5.81e-13 66.2
Msa1190730 AT1G45145.1 33.333 87 51 2 76 162 20 99 7.80e-13 62.4
Msa1190730 AT2G32920.1 38.462 78 48 0 73 150 32 109 8.22e-13 65.9
Msa1190730 AT2G32920.1 36.000 75 48 0 76 150 167 241 3.05e-12 64.3
Msa1190730 AT1G04980.1 37.179 78 49 0 73 150 34 111 1.59e-12 65.1
Msa1190730 AT1G04980.1 34.667 75 49 0 76 150 172 246 2.49e-12 64.3
Msa1190730 AT1G31020.1 32.110 109 67 4 59 161 37 144 1.37e-11 60.1
Msa1190730 AT3G53220.1 41.333 75 41 3 88 162 42 113 4.08e-11 58.2
Msa1190730 AT5G06690.1 32.432 74 49 1 90 162 119 192 8.90e-11 58.9

Find 69 sgRNAs with CRISPR-Local

Find 257 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTAATCTATTTACTGATA+TGG 0.209211 8_1:+33957058 Msa1190730:three_prime_UTR
TAAAGAAATTTAACATGTTC+TGG 0.224916 8_1:-33957103 None:intergenic
ATGGGCCTGGGCTTGGGGTT+GGG 0.246250 8_1:-33953274 None:intergenic
GAGAAAATGGGCCTGGGCTT+GGG 0.247517 8_1:-33953280 None:intergenic
TTGCTAGTTCATCAATTATA+GGG 0.270606 8_1:-33956681 None:intergenic
TGGGCTTGGGGTTGGGTCTG+AGG 0.271631 8_1:-33953267 None:intergenic
ACTGATATGGTAAGTAGATT+TGG 0.296251 8_1:+33957071 Msa1190730:three_prime_UTR
AGTGGAGTGAGTGGAGAAAA+TGG 0.296510 8_1:-33953293 None:intergenic
ATTGCTAGTTCATCAATTAT+AGG 0.309012 8_1:-33956682 None:intergenic
GGAGAAAATGGGCCTGGGCT+TGG 0.312075 8_1:-33953281 None:intergenic
AATGGGCCTGGGCTTGGGGT+TGG 0.342761 8_1:-33953275 None:intergenic
TATTAACATGACACATAAAA+AGG 0.346672 8_1:-33957152 None:intergenic
CGAATCTGAATCTCCCGTTT+TGG 0.351676 8_1:+33956615 Msa1190730:CDS
CTGCTATCACCGATGCAAAT+TGG 0.356246 8_1:+33956578 Msa1190730:CDS
GAACTAGCAATACAATATAC+TGG 0.398934 8_1:+33956694 Msa1190730:CDS
TTAATTTAGATATTAGTGTT+TGG 0.411138 8_1:-33953077 None:intergenic
GTGAGTGGAGAAAATGGGCC+TGG 0.425797 8_1:-33953287 None:intergenic
AGAAAATGGGCCTGGGCTTG+GGG 0.435068 8_1:-33953279 None:intergenic
ACGCGTAGTGTGTGAGGCTC+AGG 0.442187 8_1:+33953342 Msa1190730:CDS
CAATTTGCATCGGTGATAGC+AGG 0.443387 8_1:-33956577 None:intergenic
GCCCAGAATTCAACCAAAAC+GGG 0.446890 8_1:-33956628 None:intergenic
TGGGTCTGAGGCCCACGTAA+CGG 0.458501 8_1:-33953255 None:intergenic
GCTTGATGTCAGTGTTGACT+TGG 0.459894 8_1:-33956848 None:intergenic
GCTCAGGATACCGCTGTTGA+TGG 0.461861 8_1:+33953358 Msa1190730:CDS
AGCCCAGAATTCAACCAAAA+CGG 0.482872 8_1:-33956629 None:intergenic
TCAGACCCAACCCCAAGCCC+AGG 0.499056 8_1:+33953269 Msa1190730:CDS
TATAGGGGTGATCATTCTGC+AGG 0.501022 8_1:-33956665 None:intergenic
TGGTTGAATTCTGGGCTCCA+TGG 0.502481 8_1:+33956635 Msa1190730:CDS
CACTTTCTTTCAGTTTCCGA+TGG 0.505061 8_1:+33953144 Msa1190730:exon
GGTCTGAGGCCCACGTAACG+GGG 0.514866 8_1:-33953253 None:intergenic
TAGATATTAGTGTTTGGAGA+AGG 0.518741 8_1:-33953071 None:intergenic
CTTTGAAGATCATAACTGTC+GGG 0.521915 8_1:-33956789 None:intergenic
GTGGAGTGAGTGGAGAAAAT+GGG 0.524624 8_1:-33953292 None:intergenic
ATTTATGGAAACATGATACA+TGG 0.542457 8_1:-33956965 None:intergenic
CCTTCGACTGCTACCCGGTA+CGG 0.545287 8_1:+33956754 Msa1190730:CDS
AGTGCGAGGGACGACGGCGA+TGG 0.548132 8_1:-33953182 None:intergenic
TGAGTGGAGAAAATGGGCCT+GGG 0.549222 8_1:-33953286 None:intergenic
ACAGTTATGATCTTCAAAGA+TGG 0.556904 8_1:+33956793 Msa1190730:CDS
GAGTGCAACGACGGGAGTGA+TGG 0.559427 8_1:-33953212 None:intergenic
GGATACTTCGAATTCCGTAC+CGG 0.562816 8_1:-33956768 None:intergenic
TGCAACGACGGGAGTGATGG+CGG 0.564235 8_1:-33953209 None:intergenic
GGAAACATGATACATGGACT+TGG 0.566270 8_1:-33956959 None:intergenic
AAGTGATTGCCAATTTGCAT+CGG 0.567079 8_1:-33956587 None:intergenic
GAACTCCGGAGTGCAACGAC+GGG 0.574052 8_1:-33953220 None:intergenic
GACGGCGATGGATTCGATGA+TGG 0.575011 8_1:-33953170 None:intergenic
CCGTACCGGGTAGCAGTCGA+AGG 0.576194 8_1:-33956754 None:intergenic
CTTGATGTCAGTGTTGACTT+GGG 0.577617 8_1:-33956847 None:intergenic
GATTCGATGATGGTGGCCAT+CGG 0.579134 8_1:-33953160 None:intergenic
TCTTGAAGCAGTGGAGTGAG+TGG 0.581599 8_1:-33953302 None:intergenic
GGAAGAAGTGCGAGGGACGA+CGG 0.583005 8_1:-33953188 None:intergenic
TCTTTGAAGATCATAACTGT+CGG 0.587407 8_1:-33956790 None:intergenic
GATACTTCGAATTCCGTACC+GGG 0.589642 8_1:-33956767 None:intergenic
CAATTCACGCGTAGTGTGTG+AGG 0.589920 8_1:+33953336 Msa1190730:CDS
TGCTAGTTCATCAATTATAG+GGG 0.592259 8_1:-33956680 None:intergenic
GCTAGCAATTCTTGAAGCAG+TGG 0.597540 8_1:-33953311 None:intergenic
GAATTCTGGGCTCCATGGTG+TGG 0.602377 8_1:+33956640 Msa1190730:CDS
AGAACTCCGGAGTGCAACGA+CGG 0.606543 8_1:-33953221 None:intergenic
AGAGTCCTTCGACTGCTACC+CGG 0.610576 8_1:+33956749 Msa1190730:CDS
TCACTCCCGTCGTTGCACTC+CGG 0.627976 8_1:+33953215 Msa1190730:CDS
AGCAGTCGAAGGACTCTCAT+CGG 0.630999 8_1:-33956743 None:intergenic
TGATGGCGGAAGAAGTGCGA+GGG 0.638488 8_1:-33953195 None:intergenic
CACACACTACGCGTGAATTG+CGG 0.640205 8_1:-33953333 None:intergenic
GTGTGTGGATGAAGATGATG+TGG 0.646215 8_1:-33953039 None:intergenic
GGCGATGGATTCGATGATGG+TGG 0.652050 8_1:-33953167 None:intergenic
ATTCTGCAGGGACCACACCA+TGG 0.653948 8_1:-33956652 None:intergenic
GTCTGAGGCCCACGTAACGG+GGG 0.660386 8_1:-33953252 None:intergenic
ATAGGGGTGATCATTCTGCA+GGG 0.696317 8_1:-33956664 None:intergenic
GTGATGGCGGAAGAAGTGCG+AGG 0.700405 8_1:-33953196 None:intergenic
TGAAAACTGACCATCAACAG+CGG 0.741229 8_1:-33953368 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTTTTTTTTAATGAGA+GGG + chr8_1:33955166-33955185 Msa1190730:intron 10.0%
!! TTAATTTAGATATTAGTGTT+TGG - chr8_1:33953080-33953099 None:intergenic 15.0%
!!! TTAAAACTTATTTTTTGTCA+GGG - chr8_1:33953473-33953492 None:intergenic 15.0%
!!! TTTAAAACTTATTTTTTGTC+AGG - chr8_1:33953474-33953493 None:intergenic 15.0%
!!! ATTTGGTATTATTTTTTTGT+CGG + chr8_1:33953556-33953575 Msa1190730:intron 15.0%
!!! TATCATTTCTATACTTTTTA+AGG - chr8_1:33953814-33953833 None:intergenic 15.0%
!! TTATTAGTAAGTAGTTAATT+AGG + chr8_1:33954590-33954609 Msa1190730:intron 15.0%
!! TTAAGTAGATTATTAATAAG+TGG + chr8_1:33954614-33954633 Msa1190730:intron 15.0%
!! TCTTATTATTTAATCCTAAT+GGG - chr8_1:33954640-33954659 None:intergenic 15.0%
!!! TTCTCTTTATTTGTATATAA+AGG + chr8_1:33954687-33954706 Msa1190730:intron 15.0%
!!! TCTCTTTATTTGTATATAAA+GGG + chr8_1:33954688-33954707 Msa1190730:intron 15.0%
!!! CTATTTTTTTTTTTAATGAG+AGG + chr8_1:33955165-33955184 Msa1190730:intron 15.0%
!! ACATTATATTGAAATATGAT+TGG + chr8_1:33956292-33956311 Msa1190730:intron 15.0%
!! CATTATATTGAAATATGATT+GGG + chr8_1:33956293-33956312 Msa1190730:intron 15.0%
!!! ATTTTAAGTAAGCAAATTTA+TGG - chr8_1:33956983-33957002 None:intergenic 15.0%
!! GAAAACCAAAGAATAAATAT+TGG + chr8_1:33953423-33953442 Msa1190730:intron 20.0%
!!! TTTGGTATTATTTTTTTGTC+GGG + chr8_1:33953557-33953576 Msa1190730:intron 20.0%
!! ATTATAATTGTTAACATGCA+AGG + chr8_1:33953670-33953689 Msa1190730:intron 20.0%
!! TTCAAAGAATTGTAAAGTAA+AGG - chr8_1:33954339-33954358 None:intergenic 20.0%
!! TTCATAAACACTTCATATTT+GGG - chr8_1:33954520-33954539 None:intergenic 20.0%
!! TTTCATAAACACTTCATATT+TGG - chr8_1:33954521-33954540 None:intergenic 20.0%
!!! AAATATGAAGTGTTTATGAA+AGG + chr8_1:33954520-33954539 Msa1190730:intron 20.0%
!! CTCTTATTATTTAATCCTAA+TGG - chr8_1:33954641-33954660 None:intergenic 20.0%
!!! CTCTTTATTTGTATATAAAG+GGG + chr8_1:33954689-33954708 Msa1190730:intron 20.0%
!! AAACAGTGATTAAAGAAAAT+AGG - chr8_1:33954875-33954894 None:intergenic 20.0%
!! TAAATGATTAAACAGTAAGA+GGG - chr8_1:33954933-33954952 None:intergenic 20.0%
!! ATAAATGATTAAACAGTAAG+AGG - chr8_1:33954934-33954953 None:intergenic 20.0%
!! GTTAAAAGTAAACTGTAAAA+GGG - chr8_1:33955500-33955519 None:intergenic 20.0%
!! AGTTAAAAGTAAACTGTAAA+AGG - chr8_1:33955501-33955520 None:intergenic 20.0%
!! ATAATGGTTGAATTATATGA+TGG - chr8_1:33955657-33955676 None:intergenic 20.0%
!! TAGAAATTCATCTTATAGAA+AGG + chr8_1:33955798-33955817 Msa1190730:intron 20.0%
!!! ATCTTATAGAAAGGATTTTT+TGG + chr8_1:33955807-33955826 Msa1190730:intron 20.0%
!! CATAGAAAAATTCTTATAAG+TGG + chr8_1:33956870-33956889 Msa1190730:exon 20.0%
!!! AAAAATAGCTCTTTATTTCT+AGG - chr8_1:33956919-33956938 None:intergenic 20.0%
!! GATTAATCTATTTACTGATA+TGG + chr8_1:33957058-33957077 Msa1190730:three_prime_UTR 20.0%
!! TAAAGAAATTTAACATGTTC+TGG - chr8_1:33957106-33957125 None:intergenic 20.0%
!! TATTAACATGACACATAAAA+AGG - chr8_1:33957155-33957174 None:intergenic 20.0%
! TCAGTCCAATATTTATTCTT+TGG - chr8_1:33953431-33953450 None:intergenic 25.0%
!! ATTGATCAAGGAAAGATTTT+GGG - chr8_1:33953973-33953992 None:intergenic 25.0%
!! AATTGATCAAGGAAAGATTT+TGG - chr8_1:33953974-33953993 None:intergenic 25.0%
! AAATCTTTCCTTGATCAATT+TGG + chr8_1:33953974-33953993 Msa1190730:intron 25.0%
! CTATTGCAATGAAAATTAAG+AGG - chr8_1:33954253-33954272 None:intergenic 25.0%
! AAGAATTGTAAAGTAAAGGT+GGG - chr8_1:33954335-33954354 None:intergenic 25.0%
! AAAGAATTGTAAAGTAAAGG+TGG - chr8_1:33954336-33954355 None:intergenic 25.0%
! CAAAGAACAACTTTATTGAT+AGG + chr8_1:33954448-33954467 Msa1190730:intron 25.0%
! TCATAAACACTTCATATTTG+GGG - chr8_1:33954519-33954538 None:intergenic 25.0%
! TCACTAGTAAACTTAATTAC+TGG - chr8_1:33954559-33954578 None:intergenic 25.0%
! AGTAATTAAGTTTACTAGTG+AGG + chr8_1:33954558-33954577 Msa1190730:intron 25.0%
! TAAATAATAAGAGACCCATT+AGG + chr8_1:33954648-33954667 Msa1190730:intron 25.0%
! AAATAATAAGAGACCCATTA+GGG + chr8_1:33954649-33954668 Msa1190730:intron 25.0%
! TTCTAGTATATAACCCTAAT+GGG - chr8_1:33954665-33954684 None:intergenic 25.0%
! ATTCTAGTATATAACCCTAA+TGG - chr8_1:33954666-33954685 None:intergenic 25.0%
! GAAACTATGAATTAACAGTA+AGG - chr8_1:33954911-33954930 None:intergenic 25.0%
! AAAGACTTTAAATTCTCTCA+GGG - chr8_1:33955071-33955090 None:intergenic 25.0%
! AAAAGACTTTAAATTCTCTC+AGG - chr8_1:33955072-33955091 None:intergenic 25.0%
!!! TTCCATTTTTGTCAACAAAA+TGG - chr8_1:33955132-33955151 None:intergenic 25.0%
! TGACAAAAATGGAATATAAG+AGG + chr8_1:33955138-33955157 Msa1190730:intron 25.0%
! GACAAAAATGGAATATAAGA+GGG + chr8_1:33955139-33955158 Msa1190730:intron 25.0%
! TGTTGCAAAATAAAATGAAG+TGG + chr8_1:33955207-33955226 Msa1190730:intron 25.0%
!!! ATATTGATAATGCTAGAGAT+TGG + chr8_1:33955386-33955405 Msa1190730:intron 25.0%
! TGATGCAATTATTGAAGATA+TGG + chr8_1:33955411-33955430 Msa1190730:intron 25.0%
! TGTTCACAATTATCAATACA+AGG + chr8_1:33955537-33955556 Msa1190730:intron 25.0%
!! TGATCACAGATTAGTTATAA+TGG - chr8_1:33955673-33955692 None:intergenic 25.0%
!!! AAATTGGCTCTAAAGTTAAA+AGG - chr8_1:33955710-33955729 None:intergenic 25.0%
!!! TTTTAACTTTAGAGCCAATT+TGG + chr8_1:33955709-33955728 Msa1190730:intron 25.0%
!!! TTTAACTTTAGAGCCAATTT+GGG + chr8_1:33955710-33955729 Msa1190730:intron 25.0%
! ATACATTGATGTATTGCATT+TGG + chr8_1:33955903-33955922 Msa1190730:intron 25.0%
! TACATTGATGTATTGCATTT+GGG + chr8_1:33955904-33955923 Msa1190730:intron 25.0%
! ATCCATAATTTCTGTGTATT+TGG + chr8_1:33956031-33956050 Msa1190730:intron 25.0%
! AACCAAATACACAGAAATTA+TGG - chr8_1:33956036-33956055 None:intergenic 25.0%
!!! TATATATATGGAAAGTGTTC+TGG - chr8_1:33956227-33956246 None:intergenic 25.0%
! ATTTCAACATTGTTCATGAT+TGG + chr8_1:33956432-33956451 Msa1190730:intron 25.0%
! TTGCTAGTTCATCAATTATA+GGG - chr8_1:33956684-33956703 None:intergenic 25.0%
! ATTGCTAGTTCATCAATTAT+AGG - chr8_1:33956685-33956704 None:intergenic 25.0%
! ATTTATGGAAACATGATACA+TGG - chr8_1:33956968-33956987 None:intergenic 25.0%
TAGATATTAGTGTTTGGAGA+AGG - chr8_1:33953074-33953093 None:intergenic 30.0%
! ATAATGAGTTGGGACTAATT+TGG + chr8_1:33953539-33953558 Msa1190730:intron 30.0%
AAGTGATTCAAACTAACAGA+AGG - chr8_1:33954001-33954020 None:intergenic 30.0%
ACTTAACAAAGTTTGCATGT+TGG + chr8_1:33954017-33954036 Msa1190730:intron 30.0%
! AGGAAACAACTTCATTGATT+TGG - chr8_1:33954220-33954239 None:intergenic 30.0%
AATTAAGAGGTCTCAATGTA+AGG - chr8_1:33954240-33954259 None:intergenic 30.0%
!!! GATTTTTTCCTAGAGGAATT+AGG - chr8_1:33954400-33954419 None:intergenic 30.0%
!!! TTCTCTAGATTTTTTCCTAG+AGG - chr8_1:33954407-33954426 None:intergenic 30.0%
!!! TGTTCTTTGTTTGTTTTGCA+AGG - chr8_1:33954437-33954456 None:intergenic 30.0%
! AACTAATGATAAGGGTATGA+TGG + chr8_1:33954488-33954507 Msa1190730:intron 30.0%
! ACTAATGATAAGGGTATGAT+GGG + chr8_1:33954489-33954508 Msa1190730:intron 30.0%
! ATGAAGTGTTTATGAAAGGA+AGG + chr8_1:33954524-33954543 Msa1190730:intron 30.0%
TTATTAATAAGTGGCCCATT+AGG + chr8_1:33954623-33954642 Msa1190730:intron 30.0%
GTATATAAAGGGGAATTCTT+AGG + chr8_1:33954699-33954718 Msa1190730:intron 30.0%
! ACAGATTGAGTTTTCTGTTT+AGG + chr8_1:33954736-33954755 Msa1190730:intron 30.0%
! CAGATTGAGTTTTCTGTTTA+GGG + chr8_1:33954737-33954756 Msa1190730:intron 30.0%
AAGCATGATGAGATACTAAT+TGG - chr8_1:33954980-33954999 None:intergenic 30.0%
AACTTGACTAATGACTACTA+TGG - chr8_1:33955007-33955026 None:intergenic 30.0%
AGTAGTCATTAGTCAAGTTA+TGG + chr8_1:33955008-33955027 Msa1190730:intron 30.0%
!!! AGTCAAGTTATGGTTTTTTG+AGG + chr8_1:33955018-33955037 Msa1190730:intron 30.0%
ACATCAAAAGGGTGAAAATA+TGG + chr8_1:33955103-33955122 Msa1190730:intron 30.0%
! GACCATTTTGTTGACAAAAA+TGG + chr8_1:33955127-33955146 Msa1190730:intron 30.0%
TTTAATGAGAGGGAAACTAA+TGG + chr8_1:33955176-33955195 Msa1190730:intron 30.0%
TTAATGAGAGGGAAACTAAT+GGG + chr8_1:33955177-33955196 Msa1190730:intron 30.0%
TAAAATGAAGTGGTGATCAT+TGG + chr8_1:33955217-33955236 Msa1190730:intron 30.0%
!! TTACACAGCATTGATCAATT+TGG - chr8_1:33955348-33955367 None:intergenic 30.0%
TTATTGAAGATATGGTTAGC+TGG + chr8_1:33955419-33955438 Msa1190730:intron 30.0%
! ACCATTTTATCCATGGATAA+TGG + chr8_1:33955577-33955596 Msa1190730:intron 30.0%
TCCATTATCCATGGATAAAA+TGG - chr8_1:33955581-33955600 None:intergenic 30.0%
! TTTCTAGTCCATCATTAGAT+TGG - chr8_1:33955784-33955803 None:intergenic 30.0%
! CGATCTTGATAACTTAAACA+TGG + chr8_1:33955871-33955890 Msa1190730:intron 30.0%
TGATGAAGTTTCAATAGCAT+TGG + chr8_1:33955953-33955972 Msa1190730:intron 30.0%
ACACAGAAATTATGGATCAT+GGG - chr8_1:33956028-33956047 None:intergenic 30.0%
TACACAGAAATTATGGATCA+TGG - chr8_1:33956029-33956048 None:intergenic 30.0%
AAGTTCATTCAATCAATGCA+AGG - chr8_1:33956061-33956080 None:intergenic 30.0%
CAATAACAATACAGTGACAT+TGG + chr8_1:33956096-33956115 Msa1190730:intron 30.0%
ACTACACAAGCGTATATATA+TGG - chr8_1:33956239-33956258 None:intergenic 30.0%
! ATTGTCCAATCATCTTTTTG+GGG - chr8_1:33956334-33956353 None:intergenic 30.0%
! GATTGTCCAATCATCTTTTT+GGG - chr8_1:33956335-33956354 None:intergenic 30.0%
! AGATTGTCCAATCATCTTTT+TGG - chr8_1:33956336-33956355 None:intergenic 30.0%
TCACTGATAGATGTTAAACT+AGG + chr8_1:33956359-33956378 Msa1190730:intron 30.0%
AATTGCACAAACAAGCAAAT+AGG - chr8_1:33956390-33956409 None:intergenic 30.0%
GTCTGCAGAAAATTATCATT+TGG - chr8_1:33956479-33956498 None:intergenic 30.0%
TGCTAGTTCATCAATTATAG+GGG - chr8_1:33956683-33956702 None:intergenic 30.0%
GAACTAGCAATACAATATAC+TGG + chr8_1:33956694-33956713 Msa1190730:CDS 30.0%
! TCTTTGAAGATCATAACTGT+CGG - chr8_1:33956793-33956812 None:intergenic 30.0%
ACAGTTATGATCTTCAAAGA+TGG + chr8_1:33956793-33956812 Msa1190730:CDS 30.0%
GAGAAAAAAGACACAGTTAT+TGG + chr8_1:33956817-33956836 Msa1190730:CDS 30.0%
ACTGATATGGTAAGTAGATT+TGG + chr8_1:33957071-33957090 Msa1190730:three_prime_UTR 30.0%
AAACATGCAAATGTCACAGA+AGG + chr8_1:33954047-33954066 Msa1190730:intron 35.0%
TCCACACAAAAGTAAAGTTG+TGG + chr8_1:33954073-33954092 Msa1190730:intron 35.0%
!! TCCACAACTTTACTTTTGTG+TGG - chr8_1:33954077-33954096 None:intergenic 35.0%
ACACAAAAGTAAAGTTGTGG+AGG + chr8_1:33954076-33954095 Msa1190730:intron 35.0%
! TGAACACTGATGTTTAGAGT+TGG + chr8_1:33954107-33954126 Msa1190730:intron 35.0%
! GAACACTGATGTTTAGAGTT+GGG + chr8_1:33954108-33954127 Msa1190730:intron 35.0%
! AACACTGATGTTTAGAGTTG+GGG + chr8_1:33954109-33954128 Msa1190730:intron 35.0%
!! CAATTTGTATCAGTGGATTG+TGG + chr8_1:33954135-33954154 Msa1190730:intron 35.0%
TCATTGCAATAGCTTGACAA+TGG + chr8_1:33954261-33954280 Msa1190730:intron 35.0%
AATTGTAAAGTAAAGGTGGG+TGG - chr8_1:33954332-33954351 None:intergenic 35.0%
TAGAACTTCCTAATTCCTCT+AGG + chr8_1:33954389-33954408 Msa1190730:intron 35.0%
TGAGAAGGCAACTAATGATA+AGG + chr8_1:33954479-33954498 Msa1190730:intron 35.0%
GAGAAGGCAACTAATGATAA+GGG + chr8_1:33954480-33954499 Msa1190730:intron 35.0%
! GGGAATTCTTAGGAGTTTTA+GGG + chr8_1:33954709-33954728 Msa1190730:intron 35.0%
TGACTAATGACTACTATGGA+TGG - chr8_1:33955003-33955022 None:intergenic 35.0%
TCCTAACTCAACACATCAAA+AGG + chr8_1:33955091-33955110 Msa1190730:intron 35.0%
CCTAACTCAACACATCAAAA+GGG + chr8_1:33955092-33955111 Msa1190730:intron 35.0%
! GATATGGTTAGCTGGTTATT+AGG + chr8_1:33955427-33955446 Msa1190730:intron 35.0%
GAGTATTAGTTACTAGCTAG+TGG + chr8_1:33955449-33955468 Msa1190730:intron 35.0%
CCATGGATAAAATGGTGAAA+AGG - chr8_1:33955573-33955592 None:intergenic 35.0%
! CCTTTTCACCATTTTATCCA+TGG + chr8_1:33955570-33955589 Msa1190730:intron 35.0%
! ACAATTGCTGTTGAGAAACA+TGG - chr8_1:33955606-33955625 None:intergenic 35.0%
TCAGTCAGCATAGTAAGATA+TGG - chr8_1:33956141-33956160 None:intergenic 35.0%
!!! GTCCAGTGTATTGATTTTTG+CGG + chr8_1:33956162-33956181 Msa1190730:intron 35.0%
TACCGCAAAAATCAATACAC+TGG - chr8_1:33956167-33956186 None:intergenic 35.0%
ACTAAGCACAAAACTCAATG+CGG - chr8_1:33956194-33956213 None:intergenic 35.0%
!! GAGTTTTGTGCTTAGTTAGA+AGG + chr8_1:33956198-33956217 Msa1190730:intron 35.0%
!! ATCTTTTTGGGGGTTACAAA+CGG - chr8_1:33956323-33956342 None:intergenic 35.0%
! TTGTCCAATCATCTTTTTGG+GGG - chr8_1:33956333-33956352 None:intergenic 35.0%
! TTGGTAGTATCAAACTCAGA+TGG + chr8_1:33956451-33956470 Msa1190730:intron 35.0%
AAGTGATTGCCAATTTGCAT+CGG - chr8_1:33956590-33956609 None:intergenic 35.0%
! CTTTGAAGATCATAACTGTC+GGG - chr8_1:33956792-33956811 None:intergenic 35.0%
GCATCTGACAAAAACTATAC+AGG - chr8_1:33957019-33957038 None:intergenic 35.0%
AGAAGGAACAAAAACGTGTG+TGG - chr8_1:33953057-33953076 None:intergenic 40.0%
CACTTTCTTTCAGTTTCCGA+TGG + chr8_1:33953144-33953163 Msa1190730:exon 40.0%
TGAAAACTGACCATCAACAG+CGG - chr8_1:33953371-33953390 None:intergenic 40.0%
TTCCTCTGCGATAATGAGTT+GGG + chr8_1:33953529-33953548 Msa1190730:intron 40.0%
CAGAAGGACCAAATTGATCA+AGG - chr8_1:33953985-33954004 None:intergenic 40.0%
! ACACTGATGTTTAGAGTTGG+GGG + chr8_1:33954110-33954129 Msa1190730:intron 40.0%
! ACAATGGTGTCAATACGTAG+TGG + chr8_1:33954277-33954296 Msa1190730:intron 40.0%
! GTGTCAATACGTAGTGGTTT+TGG + chr8_1:33954283-33954302 Msa1190730:intron 40.0%
CATTAGTTGCCTTCTCATGT+GGG - chr8_1:33954476-33954495 None:intergenic 40.0%
TCATTAGTTGCCTTCTCATG+TGG - chr8_1:33954477-33954496 None:intergenic 40.0%
! GGGGAATTCTTAGGAGTTTT+AGG + chr8_1:33954708-33954727 Msa1190730:intron 40.0%
! CCCTTTTGATGTGTTGAGTT+AGG - chr8_1:33955095-33955114 None:intergenic 40.0%
AGTGGTGATCATTGGAAGAA+AGG + chr8_1:33955225-33955244 Msa1190730:intron 40.0%
!! CTGGTCTTAGTCACTTAAGA+GGG - chr8_1:33955317-33955336 None:intergenic 40.0%
! GCTAGTGGATGTCTATAGAT+AGG + chr8_1:33955464-33955483 Msa1190730:intron 40.0%
AACATGGCATCCATTATCCA+TGG - chr8_1:33955590-33955609 None:intergenic 40.0%
CTAGTCCATCATTAGATTGG+AGG - chr8_1:33955781-33955800 None:intergenic 40.0%
!! TCTTTTTGGGGGTTACAAAC+GGG - chr8_1:33956322-33956341 None:intergenic 40.0%
GTAACCCCCAAAAAGATGAT+TGG + chr8_1:33956326-33956345 Msa1190730:intron 40.0%
!!! TCCCGTTTTGGTTGAATTCT+GGG + chr8_1:33956627-33956646 Msa1190730:CDS 40.0%
AGCCCAGAATTCAACCAAAA+CGG - chr8_1:33956632-33956651 None:intergenic 40.0%
!! CTTGATGTCAGTGTTGACTT+GGG - chr8_1:33956850-33956869 None:intergenic 40.0%
GGAAACATGATACATGGACT+TGG - chr8_1:33956962-33956981 None:intergenic 40.0%
GTGTGTGGATGAAGATGATG+TGG - chr8_1:33953042-33953061 None:intergenic 45.0%
GTGGAGTGAGTGGAGAAAAT+GGG - chr8_1:33953295-33953314 None:intergenic 45.0%
AGTGGAGTGAGTGGAGAAAA+TGG - chr8_1:33953296-33953315 None:intergenic 45.0%
GCTAGCAATTCTTGAAGCAG+TGG - chr8_1:33953314-33953333 None:intergenic 45.0%
GTTCCTCTGCGATAATGAGT+TGG + chr8_1:33953528-33953547 Msa1190730:intron 45.0%
! GGGGGTACAATTTGTATCAG+TGG + chr8_1:33954128-33954147 Msa1190730:intron 45.0%
ACGCTTACTGAGATTCTCGA+GGG - chr8_1:33954363-33954382 None:intergenic 45.0%
TGATAGGATCCCACATGAGA+AGG + chr8_1:33954464-33954483 Msa1190730:intron 45.0%
! TTTCTGTTTAGGGCCAGAGT+AGG + chr8_1:33954747-33954766 Msa1190730:intron 45.0%
GATTCCTCTCTGAGTTGTGT+CGG + chr8_1:33954769-33954788 Msa1190730:intron 45.0%
!! GCTGGTCTTAGTCACTTAAG+AGG - chr8_1:33955318-33955337 None:intergenic 45.0%
AAGTGACTAAGACCAGCAGA+TGG + chr8_1:33955321-33955340 Msa1190730:intron 45.0%
GATCAATTTGGTCCATCTGC+TGG - chr8_1:33955336-33955355 None:intergenic 45.0%
TAGAGCCAATTTGGGAGAGT+AGG + chr8_1:33955718-33955737 Msa1190730:intron 45.0%
CAGTTCCTACTCTCCCAAAT+TGG - chr8_1:33955726-33955745 None:intergenic 45.0%
GCAAGCCTCCAATCTAATGA+TGG + chr8_1:33955773-33955792 Msa1190730:intron 45.0%
! CAATTTGCATCGGTGATAGC+AGG - chr8_1:33956580-33956599 None:intergenic 45.0%
CTGCTATCACCGATGCAAAT+TGG + chr8_1:33956578-33956597 Msa1190730:CDS 45.0%
! CGAATCTGAATCTCCCGTTT+TGG + chr8_1:33956615-33956634 Msa1190730:CDS 45.0%
!!! CTCCCGTTTTGGTTGAATTC+TGG + chr8_1:33956626-33956645 Msa1190730:CDS 45.0%
GCCCAGAATTCAACCAAAAC+GGG - chr8_1:33956631-33956650 None:intergenic 45.0%
ATAGGGGTGATCATTCTGCA+GGG - chr8_1:33956667-33956686 None:intergenic 45.0%
TATAGGGGTGATCATTCTGC+AGG - chr8_1:33956668-33956687 None:intergenic 45.0%
GATACTTCGAATTCCGTACC+GGG - chr8_1:33956770-33956789 None:intergenic 45.0%
GGATACTTCGAATTCCGTAC+CGG - chr8_1:33956771-33956790 None:intergenic 45.0%
!! GCTTGATGTCAGTGTTGACT+TGG - chr8_1:33956851-33956870 None:intergenic 45.0%
!!! AATTTGAATAATTTTTATAA+CGG + chr8_1:33956542-33956561 Msa1190730:intron 5.0%
!! GATTCGATGATGGTGGCCAT+CGG - chr8_1:33953163-33953182 None:intergenic 50.0%
TGAGTGGAGAAAATGGGCCT+GGG - chr8_1:33953289-33953308 None:intergenic 50.0%
TCTTGAAGCAGTGGAGTGAG+TGG - chr8_1:33953305-33953324 None:intergenic 50.0%
CACACACTACGCGTGAATTG+CGG - chr8_1:33953336-33953355 None:intergenic 50.0%
CAATTCACGCGTAGTGTGTG+AGG + chr8_1:33953336-33953355 Msa1190730:CDS 50.0%
GTCCCAACTCATTATCGCAG+AGG - chr8_1:33953534-33953553 None:intergenic 50.0%
CGCTTACTGAGATTCTCGAG+GGG - chr8_1:33954362-33954381 None:intergenic 50.0%
GACGCTTACTGAGATTCTCG+AGG - chr8_1:33954364-33954383 None:intergenic 50.0%
CTCAGAGAGGAATCCTACTC+TGG - chr8_1:33954763-33954782 None:intergenic 50.0%
TTGTGTCGGAGCTTTGCTCT+GGG + chr8_1:33954783-33954802 Msa1190730:intron 50.0%
GGGAGAGTAGGAACTGATCT+TGG + chr8_1:33955730-33955749 Msa1190730:intron 50.0%
TGGTTGAATTCTGGGCTCCA+TGG + chr8_1:33956635-33956654 Msa1190730:CDS 50.0%
AGCAGTCGAAGGACTCTCAT+CGG - chr8_1:33956746-33956765 None:intergenic 50.0%
! GGCGATGGATTCGATGATGG+TGG - chr8_1:33953170-33953189 None:intergenic 55.0%
! GACGGCGATGGATTCGATGA+TGG - chr8_1:33953173-33953192 None:intergenic 55.0%
!! TGATGGCGGAAGAAGTGCGA+GGG - chr8_1:33953198-33953217 None:intergenic 55.0%
AGAACTCCGGAGTGCAACGA+CGG - chr8_1:33953224-33953243 None:intergenic 55.0%
AGAAAATGGGCCTGGGCTTG+GGG - chr8_1:33953282-33953301 None:intergenic 55.0%
GAGAAAATGGGCCTGGGCTT+GGG - chr8_1:33953283-33953302 None:intergenic 55.0%
GTGAGTGGAGAAAATGGGCC+TGG - chr8_1:33953290-33953309 None:intergenic 55.0%
GCTCAGGATACCGCTGTTGA+TGG + chr8_1:33953358-33953377 Msa1190730:CDS 55.0%
AGCTCCGACACAACTCAGAG+AGG - chr8_1:33954776-33954795 None:intergenic 55.0%
GTTGTGTCGGAGCTTTGCTC+TGG + chr8_1:33954782-33954801 Msa1190730:intron 55.0%
GAATTCTGGGCTCCATGGTG+TGG + chr8_1:33956640-33956659 Msa1190730:CDS 55.0%
ATTCTGCAGGGACCACACCA+TGG - chr8_1:33956655-33956674 None:intergenic 55.0%
AGAGTCCTTCGACTGCTACC+CGG + chr8_1:33956749-33956768 Msa1190730:CDS 55.0%
! GGAAGAAGTGCGAGGGACGA+CGG - chr8_1:33953191-33953210 None:intergenic 60.0%
!! GTGATGGCGGAAGAAGTGCG+AGG - chr8_1:33953199-33953218 None:intergenic 60.0%
TGCAACGACGGGAGTGATGG+CGG - chr8_1:33953212-33953231 None:intergenic 60.0%
GAGTGCAACGACGGGAGTGA+TGG - chr8_1:33953215-33953234 None:intergenic 60.0%
TCACTCCCGTCGTTGCACTC+CGG + chr8_1:33953215-33953234 Msa1190730:CDS 60.0%
GAACTCCGGAGTGCAACGAC+GGG - chr8_1:33953223-33953242 None:intergenic 60.0%
GGGGGAACTTGGGAGAACTC+CGG - chr8_1:33953237-33953256 None:intergenic 60.0%
TCCCAAGTTCCCCCGTTACG+TGG + chr8_1:33953243-33953262 Msa1190730:CDS 60.0%
! CCCACGTAACGGGGGAACTT+GGG - chr8_1:33953247-33953266 None:intergenic 60.0%
CCCAAGTTCCCCCGTTACGT+GGG + chr8_1:33953244-33953263 Msa1190730:CDS 60.0%
! TGGGTCTGAGGCCCACGTAA+CGG - chr8_1:33953258-33953277 None:intergenic 60.0%
GGAGAAAATGGGCCTGGGCT+TGG - chr8_1:33953284-33953303 None:intergenic 60.0%
ACGCGTAGTGTGTGAGGCTC+AGG + chr8_1:33953342-33953361 Msa1190730:CDS 60.0%
CCTTCGACTGCTACCCGGTA+CGG + chr8_1:33956754-33956773 Msa1190730:CDS 60.0%
! GCCCACGTAACGGGGGAACT+TGG - chr8_1:33953248-33953267 None:intergenic 65.0%
! GTCTGAGGCCCACGTAACGG+GGG - chr8_1:33953255-33953274 None:intergenic 65.0%
! GGTCTGAGGCCCACGTAACG+GGG - chr8_1:33953256-33953275 None:intergenic 65.0%
! GGGTCTGAGGCCCACGTAAC+GGG - chr8_1:33953257-33953276 None:intergenic 65.0%
TGGGCTTGGGGTTGGGTCTG+AGG - chr8_1:33953270-33953289 None:intergenic 65.0%
TCAGACCCAACCCCAAGCCC+AGG + chr8_1:33953269-33953288 Msa1190730:CDS 65.0%
ATGGGCCTGGGCTTGGGGTT+GGG - chr8_1:33953277-33953296 None:intergenic 65.0%
AATGGGCCTGGGCTTGGGGT+TGG - chr8_1:33953278-33953297 None:intergenic 65.0%
CCGTACCGGGTAGCAGTCGA+AGG - chr8_1:33956757-33956776 None:intergenic 65.0%
AGTGCGAGGGACGACGGCGA+TGG - chr8_1:33953185-33953204 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 33953028 33957189 33953028 ID=Msa1190730;Name=Msa1190730
chr8_1 mRNA 33953028 33957189 33953028 ID=Msa1190730-mRNA-1;Parent=Msa1190730;Name=Msa1190730-mRNA-1;_AED=0.00;_eAED=0.00;_QI=135|1|1|1|1|1|2|301|176
chr8_1 exon 33953028 33953379 33953028 ID=Msa1190730-mRNA-1:exon:11413;Parent=Msa1190730-mRNA-1
chr8_1 exon 33956575 33957189 33956575 ID=Msa1190730-mRNA-1:exon:11414;Parent=Msa1190730-mRNA-1
chr8_1 five_prime_UTR 33953028 33953162 33953028 ID=Msa1190730-mRNA-1:five_prime_utr;Parent=Msa1190730-mRNA-1
chr8_1 CDS 33953163 33953379 33953163 ID=Msa1190730-mRNA-1:cds;Parent=Msa1190730-mRNA-1
chr8_1 CDS 33956575 33956888 33956575 ID=Msa1190730-mRNA-1:cds;Parent=Msa1190730-mRNA-1
chr8_1 three_prime_UTR 33956889 33957189 33956889 ID=Msa1190730-mRNA-1:three_prime_utr;Parent=Msa1190730-mRNA-1
Gene Sequence

>Msa1190730

ATGGCCACCATCATCGAATCCATCGCCGTCGTCCCTCGCACTTCTTCCGCCATCACTCCCGTCGTTGCACTCCGGAGTTCTCCCAAGTTCCCCCGTTACGTGGGCCTCAGACCCAACCCCAAGCCCAGGCCCATTTTCTCCACTCACTCCACTGCTTCAAGAATTGCTAGCCGCAATTCACGCGTAGTGTGTGAGGCTCAGGATACCGCTGTTGATGTGCCTGCTATCACCGATGCAAATTGGCAATCACTTGTAATCGAATCTGAATCTCCCGTTTTGGTTGAATTCTGGGCTCCATGGTGTGGTCCCTGCAGAATGATCACCCCTATAATTGATGAACTAGCAATACAATATACTGGAAAACTCAAGTGTTACAAACTCAACACCGATGAGAGTCCTTCGACTGCTACCCGGTACGGAATTCGAAGTATCCCGACAGTTATGATCTTCAAAGATGGTGAGAAAAAAGACACAGTTATTGGAGCTGTGCCCAAGTCAACACTGACATCAAGCATAGAAAAATTCTTATAA

Protein sequence

>Msa1190730

MATIIESIAVVPRTSSAITPVVALRSSPKFPRYVGLRPNPKPRPIFSTHSTASRIASRNSRVVCEAQDTAVDVPAITDANWQSLVIESESPVLVEFWAPWCGPCRMITPIIDELAIQYTGKLKCYKLNTDESPSTATRYGIRSIPTVMIFKDGEKKDTVIGAVPKSTLTSSIEKFL*