AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1148970


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1148970 MtrunA17_Chr7g0237811 94.253 174 10 0 1 174 1 174 1.65e-110 312
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1148970 AT4G13220.1 58.278 151 56 4 29 174 28 176 7.75e-51 161

Find 51 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTACAGCTTTCTTTATTT+TGG 0.099548 7_4:-29658103 Msa1148970:intron
GCACCCTGAGGCTTTGTTAA+AGG 0.218482 7_4:+29657031 None:intergenic
CTTTAACTTCAAAACCGAAT+TGG 0.273391 7_4:+29660482 None:intergenic
CCATTCTGTCAAAGTTTGTT+TGG 0.307898 7_4:+29657107 None:intergenic
GTTACTGAAATCCTTGCTAT+TGG 0.328579 7_4:+29658171 None:intergenic
TTTAACTTCAAAACCGAATT+GGG 0.351112 7_4:+29660483 None:intergenic
TCAATTTCGTTCACCCAATT+CGG 0.375040 7_4:-29660496 Msa1148970:CDS
ATCCTTTGGAAGAGGCTAAT+AGG 0.388720 7_4:-29657253 Msa1148970:CDS
CTTGATCTTTATTGAATGCT+AGG 0.393502 7_4:+29657321 None:intergenic
GAAATCTTGAATCGAGTGTT+TGG 0.408027 7_4:+29660444 None:intergenic
GAAATCCTTGCTATTGGTCT+TGG 0.422289 7_4:+29658177 None:intergenic
ATGTATAATATGAAATTGAT+TGG 0.437639 7_4:+29657184 None:intergenic
CAAAGGATCATCCATAGGTT+TGG 0.442636 7_4:+29657268 None:intergenic
CAAACCTATGGATGATCCTT+TGG 0.442745 7_4:-29657267 Msa1148970:CDS
GGAAGAGGCTAATAGGATAA+TGG 0.446378 7_4:-29657246 Msa1148970:CDS
ATAGCCTTTAACAAAGCCTC+AGG 0.448382 7_4:-29657035 Msa1148970:three_prime_UTR
TTGCTTTCAAAATCGAAACT+TGG 0.450223 7_4:-29660532 Msa1148970:CDS
GCATGGAGAGTTGGTAAGGA+TGG 0.452265 7_4:-29658536 Msa1148970:CDS
CAAGAACCACCTAGCGGGAA+TGG 0.467436 7_4:-29657302 Msa1148970:CDS
CCAAACAAACTTTGACAGAA+TGG 0.481504 7_4:-29657107 Msa1148970:three_prime_UTR
GAACAATCGAATTTATCTAA+AGG 0.487407 7_4:-29660381 Msa1148970:intron
AACACAGGAGAACAAACATT+AGG 0.513207 7_4:+29660695 None:intergenic
GTTTGTTCATAGGCTACCAT+AGG 0.522734 7_4:-29657362 Msa1148970:intron
CTGCAGAATGCATGGAGAGT+TGG 0.536539 7_4:-29658545 Msa1148970:CDS
TGGGTGAACGAAATTGATGA+TGG 0.537607 7_4:+29660502 None:intergenic
AGGAACTACGACCAAACCTA+TGG 0.545163 7_4:-29657279 Msa1148970:CDS
GGTAAGGATGGAATTGATGC+AGG 0.549168 7_4:-29658524 Msa1148970:CDS
TGCAAAGTATGCAAGTCCTA+TGG 0.552339 7_4:+29657346 None:intergenic
GGTGCACCTGGGAATGGAAG+AGG 0.555504 7_4:+29660658 None:intergenic
AGATAGTTCTGCAGAATGCA+TGG 0.555735 7_4:-29658553 Msa1148970:intron
AAGATCAAGAACCACCTAGC+GGG 0.560815 7_4:-29657307 Msa1148970:CDS
ACTATACCTCTTCCATTCCC+AGG 0.564535 7_4:-29660664 Msa1148970:five_prime_UTR
ATCCTATTAGCCTCTTCCAA+AGG 0.564567 7_4:+29657251 None:intergenic
TATGGATGATCCTTTGGAAG+AGG 0.564870 7_4:-29657261 Msa1148970:CDS
AAAGTTGTGAACAAAACCAT+TGG 0.570596 7_4:+29660569 None:intergenic
GTAGTTCCTCCATTCCCGCT+AGG 0.572693 7_4:+29657293 None:intergenic
TCTTCCAAAGGATCATCCAT+AGG 0.581655 7_4:+29657263 None:intergenic
CTGCTCGTTCCAAGCACCCG+TGG 0.596725 7_4:+29656839 None:intergenic
GAACGAAATTGATGATGGGT+AGG 0.599016 7_4:+29660507 None:intergenic
TCGCTTTGTTTAGTTATGTG+TGG 0.600291 7_4:-29656943 Msa1148970:three_prime_UTR
GAATGCATGGAGAGTTGGTA+AGG 0.601699 7_4:-29658540 Msa1148970:CDS
AAATAAAGAAAGCTGTAGAG+AGG 0.616626 7_4:+29658106 None:intergenic
GTTCCTCCATTCCCGCTAGG+TGG 0.621366 7_4:+29657296 None:intergenic
GAACCACCTAGCGGGAATGG+AGG 0.633606 7_4:-29657299 Msa1148970:CDS
CTGTACCAAGACCAATAGCA+AGG 0.633937 7_4:-29658182 Msa1148970:CDS
GGGTGAACGAAATTGATGAT+GGG 0.652854 7_4:+29660503 None:intergenic
GTATAGTGTGAATGAAACAC+AGG 0.664355 7_4:+29660680 None:intergenic
TAGCCTTTAACAAAGCCTCA+GGG 0.671889 7_4:-29657034 Msa1148970:three_prime_UTR
AAAACTACGAAATTGGAGCG+AGG 0.691122 7_4:+29660408 None:intergenic
AAAATGTCATTTGCACCCTG+AGG 0.693528 7_4:+29657019 None:intergenic
AAAGATCAAGAACCACCTAG+CGG 0.725332 7_4:-29657308 Msa1148970:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTATTCATAAATTTGTAA+AGG - chr7_4:29657518-29657537 Msa1148970:intron 10.0%
!!! TTTTAATATGATATGAAAAA+TGG + chr7_4:29659481-29659500 None:intergenic 10.0%
!!! TGTTTATAAACAAGTTATTT+TGG - chr7_4:29657213-29657232 Msa1148970:exon 15.0%
!! TATTTAAGTAAAGAATAGTT+TGG - chr7_4:29657424-29657443 Msa1148970:intron 15.0%
!!! TTCATTTTTTATTATCTTTG+TGG - chr7_4:29658969-29658988 Msa1148970:intron 15.0%
!! ATGTATAATATGAAATTGAT+TGG + chr7_4:29660369-29660388 None:intergenic 15.0%
!! TAAACAATCAATGAAAATTG+AGG + chr7_4:29657199-29657218 None:intergenic 20.0%
!! TAGTTTGGTTAATTAGATTT+AGG - chr7_4:29657252-29657271 Msa1148970:CDS 20.0%
!!! TGATGTTAGCATAAATTTTA+TGG - chr7_4:29657360-29657379 Msa1148970:intron 20.0%
!! AAAATTGTATCTTCATAAAC+TGG + chr7_4:29657558-29657577 None:intergenic 20.0%
!! AGGAACTATATTAATTGAAT+AGG - chr7_4:29657675-29657694 Msa1148970:intron 20.0%
!! AATTAGTTGAAGTTATTACT+AGG + chr7_4:29657715-29657734 None:intergenic 20.0%
!!! TTAACTTCTTTTTTTTACGA+AGG + chr7_4:29657904-29657923 None:intergenic 20.0%
!! CGTAAAAAAAAGAAGTTAAA+TGG - chr7_4:29657905-29657924 Msa1148970:intron 20.0%
!! ATTCTTATTCTAAATTGAAC+TGG - chr7_4:29657937-29657956 Msa1148970:intron 20.0%
!!! CAACATATTTTAAAGGTTTT+CGG + chr7_4:29658081-29658100 None:intergenic 20.0%
!!! TCTCAAGAAAAAGTTTATTT+TGG - chr7_4:29658226-29658245 Msa1148970:intron 20.0%
!!! CTCAAGAAAAAGTTTATTTT+GGG - chr7_4:29658227-29658246 Msa1148970:intron 20.0%
!! AATAAAACCTTAATCATACA+TGG + chr7_4:29658566-29658585 None:intergenic 20.0%
!!! TGTATGATTAAGGTTTTATT+TGG - chr7_4:29658566-29658585 Msa1148970:intron 20.0%
!!! AATTTTATGTCCTTCATAAT+TGG - chr7_4:29658882-29658901 Msa1148970:intron 20.0%
!!! ATTTTATGTCCTTCATAATT+GGG - chr7_4:29658883-29658902 Msa1148970:intron 20.0%
!! ATAGTTGAGACTTATTTATA+GGG + chr7_4:29659643-29659662 None:intergenic 20.0%
!! AATAGTTGAGACTTATTTAT+AGG + chr7_4:29659644-29659663 None:intergenic 20.0%
!! ATATATACTGTTATGAATCA+TGG + chr7_4:29659790-29659809 None:intergenic 20.0%
!! TTCCCTTTAATAACATAATA+TGG + chr7_4:29659851-29659870 None:intergenic 20.0%
!!! ATGTTGTTTTGATTGGTTTT+AGG + chr7_4:29656916-29656935 None:intergenic 25.0%
!!! CTAAACAATGTTGTTTTGAT+TGG + chr7_4:29656923-29656942 None:intergenic 25.0%
!! TTTAACTTCAAAACCGAATT+GGG + chr7_4:29657070-29657089 None:intergenic 25.0%
! GAACAATCGAATTTATCTAA+AGG - chr7_4:29657169-29657188 Msa1148970:three_prime_UTR 25.0%
! TTCATGTATTTCTCTTAGTT+TGG - chr7_4:29657237-29657256 Msa1148970:CDS 25.0%
! TAGGTTGTAATGTTTAAAAG+AGG - chr7_4:29657271-29657290 Msa1148970:CDS 25.0%
! TAATGTTTAAAAGAGGTGAA+GGG - chr7_4:29657278-29657297 Msa1148970:CDS 25.0%
! TTCTAAATTGAACTGGTTAA+TGG - chr7_4:29657944-29657963 Msa1148970:intron 25.0%
!!! CAAGGTACAACATATTTTAA+AGG + chr7_4:29658088-29658107 None:intergenic 25.0%
! AATATGTTGTACCTTGATTA+AGG - chr7_4:29658092-29658111 Msa1148970:intron 25.0%
! AAACATAAAGACCTTAATCA+AGG + chr7_4:29658106-29658125 None:intergenic 25.0%
! TGATTAAGGTCTTTATGTTT+AGG - chr7_4:29658106-29658125 Msa1148970:CDS 25.0%
!! TTAAGTTGTTTATCCAAACA+CGG - chr7_4:29658817-29658836 Msa1148970:intron 25.0%
! AAAATGAAAGAGCAATAGTT+AGG + chr7_4:29658957-29658976 None:intergenic 25.0%
! TTGTACTAAATCACTTATTG+CGG + chr7_4:29659155-29659174 None:intergenic 25.0%
! GTAAAAAACTTGAAAACAAC+AGG + chr7_4:29659279-29659298 None:intergenic 25.0%
! GTTAGGTTATATGTAAACTA+TGG - chr7_4:29659568-29659587 Msa1148970:intron 25.0%
! TAGTTGAGACTTATTTATAG+GGG + chr7_4:29659642-29659661 None:intergenic 25.0%
! TGGCCATATTATGTTATTAA+AGG - chr7_4:29659845-29659864 Msa1148970:intron 25.0%
! GGCCATATTATGTTATTAAA+GGG - chr7_4:29659846-29659865 Msa1148970:intron 25.0%
! AAAAATTCAACCCTACAAAA+GGG + chr7_4:29659900-29659919 None:intergenic 25.0%
! AAAAAATTCAACCCTACAAA+AGG + chr7_4:29659901-29659920 None:intergenic 25.0%
!!! TACAAAGTATTGTCAAACAA+CGG - chr7_4:29660003-29660022 Msa1148970:intron 25.0%
!! GCTAATTATGCTATATTTTG+TGG - chr7_4:29660149-29660168 Msa1148970:intron 25.0%
!!! ATTGTTAGTTTTGATGAGAA+AGG - chr7_4:29660411-29660430 Msa1148970:CDS 25.0%
AGAACAAAAATGTTTGCCAA+TGG - chr7_4:29656965-29656984 Msa1148970:three_prime_UTR 30.0%
AAAGTTGTGAACAAAACCAT+TGG + chr7_4:29656984-29657003 None:intergenic 30.0%
!! TTTCGATTTTGAAAGCAACA+TGG + chr7_4:29657016-29657035 None:intergenic 30.0%
TTGCTTTCAAAATCGAAACT+TGG - chr7_4:29657018-29657037 Msa1148970:three_prime_UTR 30.0%
! CTTTAACTTCAAAACCGAAT+TGG + chr7_4:29657071-29657090 None:intergenic 30.0%
TTCTGCAAAAACTACGAAAT+TGG + chr7_4:29657152-29657171 None:intergenic 30.0%
GTAATGTTTAAAAGAGGTGA+AGG - chr7_4:29657277-29657296 Msa1148970:CDS 30.0%
!!! ATTGCAATTGTTTTTTCCAG+TGG - chr7_4:29657324-29657343 Msa1148970:CDS 30.0%
AAGATAAGTCAATCCATAGA+GGG - chr7_4:29657646-29657665 Msa1148970:intron 30.0%
ACATTACATTAGCATGATCT+TGG - chr7_4:29658038-29658057 Msa1148970:intron 30.0%
!!! GTTTATTTTGGGATGTAAGA+TGG - chr7_4:29658238-29658257 Msa1148970:intron 30.0%
! ATTTTCACTTGGCATATACA+AGG + chr7_4:29658319-29658338 None:intergenic 30.0%
! TTCTCTGTGAAATTTTCACT+TGG + chr7_4:29658330-29658349 None:intergenic 30.0%
! ACGAAAACTAGGTACATTTT+AGG + chr7_4:29658373-29658392 None:intergenic 30.0%
AAGATATGATCCTTTCATGA+TGG - chr7_4:29658411-29658430 Msa1148970:intron 30.0%
AATACAGTAACCATCATGAA+AGG + chr7_4:29658424-29658443 None:intergenic 30.0%
CAAAAGACAAAGCAATTATC+AGG + chr7_4:29658455-29658474 None:intergenic 30.0%
! CTGATAATTGCTTTGTCTTT+TGG - chr7_4:29658453-29658472 Msa1148970:intron 30.0%
!! TTGTCTTTTGGAAATTCATG+TGG - chr7_4:29658465-29658484 Msa1148970:intron 30.0%
!! TGTCTTTTGGAAATTCATGT+GGG - chr7_4:29658466-29658485 Msa1148970:intron 30.0%
! TGGTGTTTTCCTTTCAAAAT+AGG + chr7_4:29658546-29658565 None:intergenic 30.0%
GAAAACACCATGTATGATTA+AGG - chr7_4:29658556-29658575 Msa1148970:intron 30.0%
!! CTTATTTTCATTAGCTCTCT+AGG - chr7_4:29658687-29658706 Msa1148970:intron 30.0%
TTAAGTGTTCCCAATTATGA+AGG + chr7_4:29658895-29658914 None:intergenic 30.0%
AATGGTAATTGTGACTTACA+GGG + chr7_4:29659064-29659083 None:intergenic 30.0%
AAATGGTAATTGTGACTTAC+AGG + chr7_4:29659065-29659084 None:intergenic 30.0%
TAAGTCACAATTACCATTTC+CGG - chr7_4:29659066-29659085 Msa1148970:intron 30.0%
TAGCAGATATTTGTGCTATA+TGG - chr7_4:29659100-29659119 Msa1148970:intron 30.0%
ATATTTGTGCTATATGGTAG+CGG - chr7_4:29659106-29659125 Msa1148970:intron 30.0%
GAGAAACATGAAAAACTAGA+AGG + chr7_4:29659315-29659334 None:intergenic 30.0%
! AAGGATTTCAGTAACTTTTG+TGG - chr7_4:29659387-29659406 Msa1148970:intron 30.0%
AAATAAAGAAAGCTGTAGAG+AGG + chr7_4:29659447-29659466 None:intergenic 30.0%
!! CTCTACAGCTTTCTTTATTT+TGG - chr7_4:29659447-29659466 Msa1148970:intron 30.0%
ATAGTGAATAAACCACAGTT+AGG - chr7_4:29659551-29659570 Msa1148970:intron 30.0%
GTTTACATATAACCTAACTG+TGG + chr7_4:29659566-29659585 None:intergenic 30.0%
! GGTTAGTTAGTTAGTTAGTT+AGG - chr7_4:29659589-29659608 Msa1148970:intron 30.0%
! AATGTCTTTTCCCTTTTGTA+GGG - chr7_4:29659887-29659906 Msa1148970:intron 30.0%
ATCCTAAAGTCTTAACCATT+GGG + chr7_4:29660106-29660125 None:intergenic 30.0%
TATCCTAAAGTCTTAACCAT+TGG + chr7_4:29660107-29660126 None:intergenic 30.0%
CAAGTACATTGTTTGTTCAT+AGG - chr7_4:29660178-29660197 Msa1148970:intron 30.0%
CTTGATCTTTATTGAATGCT+AGG + chr7_4:29660232-29660251 None:intergenic 30.0%
! AATGACATTTTCTATTGCAC+AGG - chr7_4:29660543-29660562 Msa1148970:CDS 30.0%
AACACAGGAGAACAAACATT+AGG + chr7_4:29656858-29656877 None:intergenic 35.0%
GTATAGTGTGAATGAAACAC+AGG + chr7_4:29656873-29656892 None:intergenic 35.0%
TCAATTTCGTTCACCCAATT+CGG - chr7_4:29657054-29657073 Msa1148970:three_prime_UTR 35.0%
GAAATCTTGAATCGAGTGTT+TGG + chr7_4:29657109-29657128 None:intergenic 35.0%
! TCAATACTAGAGTTTTCCAC+TGG + chr7_4:29657343-29657362 None:intergenic 35.0%
!! TTTGGTGTTAAGTGTCTGTT+TGG - chr7_4:29657442-29657461 Msa1148970:intron 35.0%
TGTTAAGTGTCTGTTTGGAT+TGG - chr7_4:29657447-29657466 Msa1148970:intron 35.0%
GAAGATAAGTCAATCCATAG+AGG - chr7_4:29657645-29657664 Msa1148970:intron 35.0%
GAAGTTATTACTAGGTGACT+AGG + chr7_4:29657707-29657726 None:intergenic 35.0%
CATTTGCCAATATGAAGTGT+CGG - chr7_4:29657858-29657877 Msa1148970:intron 35.0%
!! TGAGTGTCACTTCTACAAAT+TGG + chr7_4:29657989-29658008 None:intergenic 35.0%
TTGTAGAAGTGACACTCATT+TGG - chr7_4:29657991-29658010 Msa1148970:intron 35.0%
TAAAGATTGCTTGACCTAGA+TGG - chr7_4:29658188-29658207 Msa1148970:CDS 35.0%
TTAAGAGTTTGATGCCATCT+AGG + chr7_4:29658205-29658224 None:intergenic 35.0%
AAAGGATCATATCTTCCAAG+TGG + chr7_4:29658406-29658425 None:intergenic 35.0%
GAGTTTATGCATTTGTGATG+AGG - chr7_4:29658517-29658536 Msa1148970:CDS 35.0%
!! ATGAGGCATCCTATTTTGAA+AGG - chr7_4:29658534-29658553 Msa1148970:CDS 35.0%
TTAAGCTTGTCCAATGATGT+AGG - chr7_4:29658599-29658618 Msa1148970:intron 35.0%
! TCTTAAAGTGCCTACATCAT+TGG + chr7_4:29658612-29658631 None:intergenic 35.0%
TTCGTTGTTCAACAAGTCTT+AGG + chr7_4:29658843-29658862 None:intergenic 35.0%
AAGTCACAATTACCATTTCC+GGG - chr7_4:29659067-29659086 Msa1148970:intron 35.0%
! TACAAAGTCTTGTCGAATAG+TGG - chr7_4:29659170-29659189 Msa1148970:intron 35.0%
TCTAGCATCAGCAAAAAGAA+GGG + chr7_4:29659345-29659364 None:intergenic 35.0%
TTCTAGCATCAGCAAAAAGA+AGG + chr7_4:29659346-29659365 None:intergenic 35.0%
! GTTACTGAAATCCTTGCTAT+TGG + chr7_4:29659382-29659401 None:intergenic 35.0%
ATCAGCAAGAAAGATAGCAT+AGG + chr7_4:29659742-29659761 None:intergenic 35.0%
ATCATTATGACCTTTATCCC+TGG - chr7_4:29659760-29659779 Msa1148970:intron 35.0%
TCATTATGACCTTTATCCCT+GGG - chr7_4:29659761-29659780 Msa1148970:intron 35.0%
TTATGAATCATGGAATCCCA+GGG + chr7_4:29659780-29659799 None:intergenic 35.0%
ACATGAATGAACATGGCAAT+TGG + chr7_4:29659823-29659842 None:intergenic 35.0%
! GAATGTCTTTTCCCTTTTGT+AGG - chr7_4:29659886-29659905 Msa1148970:intron 35.0%
!! GGGAAACTTGTTGTCAATTA+CGG + chr7_4:29660086-29660105 None:intergenic 35.0%
ATTGACAACAAGTTTCCCAA+TGG - chr7_4:29660088-29660107 Msa1148970:intron 35.0%
TTCCCAATGGTTAAGACTTT+AGG - chr7_4:29660101-29660120 Msa1148970:intron 35.0%
! CCATTCTGTCAAAGTTTGTT+TGG + chr7_4:29660446-29660465 None:intergenic 35.0%
CCAAACAAACTTTGACAGAA+TGG - chr7_4:29660443-29660462 Msa1148970:CDS 35.0%
!! TCGCTTTGTTTAGTTATGTG+TGG - chr7_4:29660607-29660626 Msa1148970:five_prime_UTR 35.0%
!! GAACGAAATTGATGATGGGT+AGG + chr7_4:29657046-29657065 None:intergenic 40.0%
! GGGTGAACGAAATTGATGAT+GGG + chr7_4:29657050-29657069 None:intergenic 40.0%
TGGGTGAACGAAATTGATGA+TGG + chr7_4:29657051-29657070 None:intergenic 40.0%
AAAACTACGAAATTGGAGCG+AGG + chr7_4:29657145-29657164 None:intergenic 40.0%
AAGAGGTGAAGGGATGTTAA+TGG - chr7_4:29657288-29657307 Msa1148970:CDS 40.0%
AGAGGTGAAGGGATGTTAAT+GGG - chr7_4:29657289-29657308 Msa1148970:CDS 40.0%
CAATCCATAGAGGGACATTA+AGG - chr7_4:29657655-29657674 Msa1148970:intron 40.0%
AGTTCCTTAATGTCCCTCTA+TGG + chr7_4:29657662-29657681 None:intergenic 40.0%
CTGCATGGTGCATAATATGT+GGG - chr7_4:29657815-29657834 Msa1148970:intron 40.0%
TATGTGGGTACTACATAGCT+AGG - chr7_4:29657830-29657849 Msa1148970:intron 40.0%
ATGTGGGTACTACATAGCTA+GGG - chr7_4:29657831-29657850 Msa1148970:intron 40.0%
!! TGATCTTGGATTAGCGAGTT+AGG - chr7_4:29658052-29658071 Msa1148970:intron 40.0%
! GATGGCTAGTAACCATTTTC+TGG - chr7_4:29658256-29658275 Msa1148970:intron 40.0%
GAAACATCAACGCCAGAAAA+TGG + chr7_4:29658271-29658290 None:intergenic 40.0%
!! GTAGGCACTTTAAGACTGTT+TGG - chr7_4:29658617-29658636 Msa1148970:intron 40.0%
AGAGCAATAGTTAGGCTTTC+TGG + chr7_4:29658949-29658968 None:intergenic 40.0%
! AGATAGTTCTGCAGAATGCA+TGG - chr7_4:29658997-29659016 Msa1148970:intron 40.0%
TATTTGACAATGCCCGGAAA+TGG + chr7_4:29659082-29659101 None:intergenic 40.0%
! ATCTGCTATTTGACAATGCC+CGG + chr7_4:29659088-29659107 None:intergenic 40.0%
ATCACTTATTGCGGAACAAC+AGG + chr7_4:29659146-29659165 None:intergenic 40.0%
TCGAATAGTGGCTATAACAG+TGG - chr7_4:29659182-29659201 Msa1148970:intron 40.0%
ATTATAGCACTGCAGTGTAG+CGG - chr7_4:29659206-29659225 Msa1148970:intron 40.0%
!!! ACAGGCAGTTTTTTCAATCG+CGG + chr7_4:29659261-29659280 None:intergenic 40.0%
!! GAAATCCTTGCTATTGGTCT+TGG + chr7_4:29659376-29659395 None:intergenic 40.0%
TACTCTACTATGAGTCACTG+TGG - chr7_4:29659696-29659715 Msa1148970:intron 40.0%
ACTCTACTATGAGTCACTGT+GGG - chr7_4:29659697-29659716 Msa1148970:intron 40.0%
TAGCATAGGTGTATTCACGT+GGG + chr7_4:29659728-29659747 None:intergenic 40.0%
ATAGCATAGGTGTATTCACG+TGG + chr7_4:29659729-29659748 None:intergenic 40.0%
GTTATGAATCATGGAATCCC+AGG + chr7_4:29659781-29659800 None:intergenic 40.0%
TGCCATGTTCATTCATGTAC+TGG - chr7_4:29659825-29659844 Msa1148970:intron 40.0%
! ATAGCTGCTGTTTGAAACAG+TGG + chr7_4:29659934-29659953 None:intergenic 40.0%
GTTTGTTCATAGGCTACCAT+AGG - chr7_4:29660188-29660207 Msa1148970:intron 40.0%
TGCAAAGTATGCAAGTCCTA+TGG + chr7_4:29660207-29660226 None:intergenic 40.0%
AAAGATCAAGAACCACCTAG+CGG - chr7_4:29660242-29660261 Msa1148970:intron 40.0%
CAAAGGATCATCCATAGGTT+TGG + chr7_4:29660285-29660304 None:intergenic 40.0%
CAAACCTATGGATGATCCTT+TGG - chr7_4:29660283-29660302 Msa1148970:intron 40.0%
TCTTCCAAAGGATCATCCAT+AGG + chr7_4:29660290-29660309 None:intergenic 40.0%
! TATGGATGATCCTTTGGAAG+AGG - chr7_4:29660289-29660308 Msa1148970:intron 40.0%
! ATCCTTTGGAAGAGGCTAAT+AGG - chr7_4:29660297-29660316 Msa1148970:intron 40.0%
! ATCCTATTAGCCTCTTCCAA+AGG + chr7_4:29660302-29660321 None:intergenic 40.0%
GGAAGAGGCTAATAGGATAA+TGG - chr7_4:29660304-29660323 Msa1148970:intron 40.0%
ATAGCCTTTAACAAAGCCTC+AGG - chr7_4:29660515-29660534 Msa1148970:CDS 40.0%
TAGCCTTTAACAAAGCCTCA+GGG - chr7_4:29660516-29660535 Msa1148970:CDS 40.0%
! AAAATGTCATTTGCACCCTG+AGG + chr7_4:29660534-29660553 None:intergenic 40.0%
ACTATACCTCTTCCATTCCC+AGG - chr7_4:29656886-29656905 Msa1148970:three_prime_UTR 45.0%
!!! GATTGGTTTTAGGTGCACCT+GGG + chr7_4:29656906-29656925 None:intergenic 45.0%
!!! TGATTGGTTTTAGGTGCACC+TGG + chr7_4:29656907-29656926 None:intergenic 45.0%
! CGAAATTGGAGCGAGGTTTT+AGG + chr7_4:29657138-29657157 None:intergenic 45.0%
CCACATATTATGCACCATGC+AGG + chr7_4:29657817-29657836 None:intergenic 45.0%
CCTGCATGGTGCATAATATG+TGG - chr7_4:29657814-29657833 Msa1148970:intron 45.0%
TGTGGGTACTACATAGCTAG+GGG - chr7_4:29657832-29657851 Msa1148970:intron 45.0%
!! GTAGCACCGACACTTCATAT+TGG + chr7_4:29657867-29657886 None:intergenic 45.0%
GTCATCGACACACGAAAACT+AGG + chr7_4:29658384-29658403 None:intergenic 45.0%
AACAAGTCTTAGGCCGTGTT+TGG + chr7_4:29658833-29658852 None:intergenic 45.0%
!! GAATGCATGGAGAGTTGGTA+AGG - chr7_4:29659010-29659029 Msa1148970:intron 45.0%
GGTAAGGATGGAATTGATGC+AGG - chr7_4:29659026-29659045 Msa1148970:intron 45.0%
CAATCGCGGATCACAGAAAA+TGG + chr7_4:29659247-29659266 None:intergenic 45.0%
CTGTACCAAGACCAATAGCA+AGG - chr7_4:29659368-29659387 Msa1148970:intron 45.0%
TCATGGAATCCCAGGGATAA+AGG + chr7_4:29659773-29659792 None:intergenic 45.0%
GGCCAGTACATGAATGAACA+TGG + chr7_4:29659830-29659849 None:intergenic 45.0%
AAGATCAAGAACCACCTAGC+GGG - chr7_4:29660243-29660262 Msa1148970:intron 45.0%
AGGAACTACGACCAAACCTA+TGG - chr7_4:29660271-29660290 Msa1148970:intron 45.0%
!! GTTTTAGGTGCACCTGGGAA+TGG + chr7_4:29656901-29656920 None:intergenic 50.0%
ACACGACACTCACACGTAGA+CGG - chr7_4:29657772-29657791 Msa1148970:intron 50.0%
!! AGTGTCGGTGCTACATAGCT+AGG - chr7_4:29657873-29657892 Msa1148970:intron 50.0%
!! GTGTCGGTGCTACATAGCTA+GGG - chr7_4:29657874-29657893 Msa1148970:intron 50.0%
! TTCGTGTGTCGATGACCACT+TGG - chr7_4:29658388-29658407 Msa1148970:intron 50.0%
CTGCAGAATGCATGGAGAGT+TGG - chr7_4:29659005-29659024 Msa1148970:intron 50.0%
!! GCATGGAGAGTTGGTAAGGA+TGG - chr7_4:29659014-29659033 Msa1148970:intron 50.0%
!! GCACCCTGAGGCTTTGTTAA+AGG + chr7_4:29660522-29660541 None:intergenic 50.0%
!!! TAACCAGCGCCGTTTTTCCA+CGG - chr7_4:29660694-29660713 Msa1148970:five_prime_UTR 50.0%
TCCAAGCACCCGTGGAAAAA+CGG + chr7_4:29660706-29660725 None:intergenic 50.0%
GTGGCGTTGCTTGCTTCACT+GGG + chr7_4:29657745-29657764 None:intergenic 55.0%
TGTGGCGTTGCTTGCTTCAC+TGG + chr7_4:29657746-29657765 None:intergenic 55.0%
! TGAGTGTCGTGTCAGGTGTG+TGG + chr7_4:29657764-29657783 None:intergenic 55.0%
! CTACGTGTGAGTGTCGTGTC+AGG + chr7_4:29657771-29657790 None:intergenic 55.0%
CACGACACTCACACGTAGAC+GGG - chr7_4:29657773-29657792 Msa1148970:intron 55.0%
! CACTCACACGTAGACGGGTT+TGG - chr7_4:29657778-29657797 Msa1148970:intron 55.0%
! AGACGGGTTTGGATCCCCTA+TGG - chr7_4:29657789-29657808 Msa1148970:intron 55.0%
! TGCACCATGCAGGTGCCATA+GGG + chr7_4:29657807-29657826 None:intergenic 55.0%
! ATGCACCATGCAGGTGCCAT+AGG + chr7_4:29657808-29657827 None:intergenic 55.0%
CAAGAACCACCTAGCGGGAA+TGG - chr7_4:29660248-29660267 Msa1148970:intron 55.0%
GTAGTTCCTCCATTCCCGCT+AGG + chr7_4:29660260-29660279 None:intergenic 55.0%
!!! AACCAGCGCCGTTTTTCCAC+GGG - chr7_4:29660695-29660714 Msa1148970:five_prime_UTR 55.0%
GGTGCACCTGGGAATGGAAG+AGG + chr7_4:29656895-29656914 None:intergenic 60.0%
GATCCCCTATGGCACCTGCA+TGG - chr7_4:29657800-29657819 Msa1148970:intron 60.0%
! GCACCATGCAGGTGCCATAG+GGG + chr7_4:29657806-29657825 None:intergenic 60.0%
GAACCACCTAGCGGGAATGG+AGG - chr7_4:29660251-29660270 Msa1148970:intron 60.0%
GTTCCTCCATTCCCGCTAGG+TGG + chr7_4:29660257-29660276 None:intergenic 60.0%
!!! GCCGTTTTTCCACGGGTGCT+TGG - chr7_4:29660702-29660721 Msa1148970:five_prime_UTR 60.0%
CACCCGTGGAAAAACGGCGC+TGG + chr7_4:29660700-29660719 None:intergenic 65.0%
CTGCTCGTTCCAAGCACCCG+TGG + chr7_4:29660714-29660733 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 29656834 29660738 29656834 ID=Msa1148970;Name=Msa1148970
chr7_4 mRNA 29656834 29660738 29656834 ID=Msa1148970-mRNA-1;Parent=Msa1148970;Name=Msa1148970-mRNA-1;_AED=0.00;_eAED=0.00;_QI=140|1|1|1|1|1|4|398|174
chr7_4 exon 29656834 29657372 29656834 ID=Msa1148970-mRNA-1:exon:7294;Parent=Msa1148970-mRNA-1
chr7_4 exon 29658104 29658208 29658104 ID=Msa1148970-mRNA-1:exon:7293;Parent=Msa1148970-mRNA-1
chr7_4 exon 29658508 29658569 29658508 ID=Msa1148970-mRNA-1:exon:7292;Parent=Msa1148970-mRNA-1
chr7_4 exon 29660382 29660738 29660382 ID=Msa1148970-mRNA-1:exon:7291;Parent=Msa1148970-mRNA-1
chr7_4 five_prime_UTR 29660599 29660738 29660599 ID=Msa1148970-mRNA-1:five_prime_utr;Parent=Msa1148970-mRNA-1
chr7_4 CDS 29660382 29660598 29660382 ID=Msa1148970-mRNA-1:cds;Parent=Msa1148970-mRNA-1
chr7_4 CDS 29658508 29658569 29658508 ID=Msa1148970-mRNA-1:cds;Parent=Msa1148970-mRNA-1
chr7_4 CDS 29658104 29658208 29658104 ID=Msa1148970-mRNA-1:cds;Parent=Msa1148970-mRNA-1
chr7_4 CDS 29657232 29657372 29657232 ID=Msa1148970-mRNA-1:cds;Parent=Msa1148970-mRNA-1
chr7_4 three_prime_UTR 29656834 29657231 29656834 ID=Msa1148970-mRNA-1:three_prime_utr;Parent=Msa1148970-mRNA-1
Gene Sequence

>Msa1148970

ATGTTTGCCAATGGTTTTGTTCACAACTTTAGTTCTGTTCCATGTTGCTTTCAAAATCGAAACTTGGCTCCTACCCATCATCAATTTCGTTCACCCAATTCGGTTTTGAAGTTAAAGAAGCAAACTTTACTGCCAAACACTCGATTCAAGATTTCTAGAAGCCTAAAACCTCGCTCCAATTTCGTAGTTTTTGCAGAACAATCGAATTTATCTAAAGTTCTGCAGAATGCATGGAGAGTTGGTAAGGATGGAATTGATGCAGGCACAAATCTAGTCCCTAATTCTGTACCAAGACCAATAGCAAGGATTTCAGTAACTTTTGTGGCTCTGAGTGCTTTGCTTTTTGTGTTCAAGTCTCTCCTCTCTACAGCTTTCTTTATTTTGGCTACCATAGGACTTGCATACTTTGCATACCTAGCATTCAATAAAGATCAAGAACCACCTAGCGGGAATGGAGGAACTACGACCAAACCTATGGATGATCCTTTGGAAGAGGCTAATAGGATAATGGATAAATACAAGTAG

Protein sequence

>Msa1148970

MFANGFVHNFSSVPCCFQNRNLAPTHHQFRSPNSVLKLKKQTLLPNTRFKISRSLKPRSNFVVFAEQSNLSKVLQNAWRVGKDGIDAGTNLVPNSVPRPIARISVTFVALSALLFVFKSLLSTAFFILATIGLAYFAYLAFNKDQEPPSGNGGTTTKPMDDPLEEANRIMDKYK*