AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1222890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1222890 MtrunA17_Chr4g0074521 97.740 354 7 1 208 561 127 479 0.0 711
Msa1222890 MtrunA17_Chr4g0074521 79.412 136 17 2 1 135 1 126 6.18e-51 182
Msa1222890 MtrunA17_Chr0c30g0494091 98.502 267 4 0 208 474 127 393 0.0 537
Msa1222890 MtrunA17_Chr0c30g0494091 79.412 136 17 2 1 135 1 126 7.86e-52 182
Msa1222890 MtrunA17_Chr0c30g0494081 86.275 51 7 0 476 526 13 63 1.22e-25 100
Msa1222890 MtrunA17_Chr3g0121351 30.636 346 182 14 203 523 185 497 2.38e-23 104
Msa1222890 MtrunA17_Chr2g0299681 25.691 362 228 11 196 552 76 401 1.14e-20 94.7
Msa1222890 MtrunA17_Chr6g0466611 26.359 368 215 14 208 553 187 520 2.03e-20 95.5
Msa1222890 MtrunA17_Chr1g0176041 28.614 339 197 11 203 523 194 505 1.13e-19 92.8
Msa1222890 MtrunA17_Chr6g0483491 27.795 331 206 11 208 535 55 355 2.34e-19 90.9
Msa1222890 MtrunA17_Chr2g0293631 28.152 341 195 8 208 535 541 844 3.38e-19 92.0
Msa1222890 MtrunA17_Chr7g0236841 27.795 331 206 11 208 535 55 355 3.68e-19 90.1
Msa1222890 MtrunA17_Chr3g0107851 29.129 333 187 14 208 523 162 462 4.36e-19 90.9
Msa1222890 MtrunA17_Chr4g0063551 28.022 364 192 16 190 523 171 494 5.49e-19 90.9
Msa1222890 MtrunA17_Chr2g0329931 24.533 375 230 13 196 561 76 406 1.01e-18 88.6
Msa1222890 MtrunA17_Chr4g0070981 25.758 330 210 9 196 523 76 372 1.03e-18 88.6
Msa1222890 MtrunA17_Chr6g0449911 28.460 383 206 13 195 553 201 539 1.72e-18 89.4
Msa1222890 MtrunA17_Chr2g0330401 25.783 415 245 14 163 552 94 470 3.10e-18 87.8
Msa1222890 MtrunA17_Chr4g0062301 26.316 323 204 8 208 523 142 437 4.41e-18 87.8
Msa1222890 MtrunA17_Chr8g0342861 26.269 335 202 11 196 523 76 372 5.59e-18 86.3
Msa1222890 MtrunA17_Chr8g0347151 27.616 344 195 14 203 524 241 552 5.77e-18 87.4
Msa1222890 MtrunA17_Chr2g0307471 26.994 326 207 9 203 523 131 430 7.27e-18 87.0
Msa1222890 MtrunA17_Chr5g0409981 27.628 333 190 11 208 523 147 445 4.22e-17 84.3
Msa1222890 MtrunA17_Chr4g0040761 26.727 333 201 12 200 523 56 354 1.87e-16 83.2
Msa1222890 MtrunA17_Chr1g0157691 23.800 479 292 18 108 560 101 532 2.18e-16 82.4
Msa1222890 MtrunA17_Chr6g0449741 25.698 358 201 13 208 536 294 615 1.85e-15 79.7
Msa1222890 MtrunA17_Chr4g0076491 25.348 359 203 13 208 536 332 655 5.06e-15 78.2
Msa1222890 MtrunA17_Chr2g0310581 27.217 327 196 12 206 523 96 389 5.62e-15 77.8
Msa1222890 MtrunA17_Chr3g0095031 27.523 327 201 9 203 523 130 426 5.90e-15 77.8
Msa1222890 MtrunA17_Chr8g0347161 26.163 344 200 15 203 524 142 453 7.71e-15 77.4
Msa1222890 MtrunA17_Chr1g0149251 24.934 377 213 14 200 553 1 330 8.69e-15 75.9
Msa1222890 MtrunA17_Chr5g0442191 28.657 335 187 11 203 523 121 417 1.16e-14 77.0
Msa1222890 MtrunA17_Chr7g0263771 25.602 332 186 12 208 523 178 464 1.25e-14 77.0
Msa1222890 MtrunA17_Chr2g0297261 24.625 333 198 12 203 523 74 365 1.81e-14 75.5
Msa1222890 MtrunA17_Chr3g0098121 27.439 328 193 14 207 523 196 489 2.88e-14 75.9
Msa1222890 MtrunA17_Chr5g0443991 23.988 346 225 11 203 540 116 431 4.18e-14 75.5
Msa1222890 MtrunA17_Chr8g0386451 24.432 352 207 15 198 524 322 639 4.88e-14 75.1
Msa1222890 MtrunA17_Chr4g0003441 22.193 374 239 9 198 559 143 476 5.01e-14 74.7
Msa1222890 MtrunA17_Chr2g0300291 27.134 328 195 13 207 523 185 479 5.02e-14 75.1
Msa1222890 MtrunA17_Chr3g0114081 23.708 329 222 6 208 523 61 373 7.40e-14 74.3
Msa1222890 MtrunA17_Chr7g0271121 25.982 331 203 8 203 523 146 444 8.11e-14 74.7
Msa1222890 MtrunA17_Chr8g0347171 25.146 342 204 13 203 523 200 510 1.10e-13 73.9
Msa1222890 MtrunA17_Chr6g0475251 25.344 363 221 13 203 551 143 469 2.05e-13 73.2
Msa1222890 MtrunA17_Chr2g0277821 24.722 360 202 13 208 544 549 862 6.16e-12 68.9
Msa1222890 MtrunA17_Chr4g0058591 26.266 316 194 10 185 494 228 510 9.95e-12 67.4
Msa1222890 MtrunA17_Chr3g0145781 23.892 406 240 14 155 523 122 495 1.06e-11 67.4
Msa1222890 MtrunA17_Chr8g0364251 26.776 183 117 6 347 523 356 527 1.24e-11 67.4
Msa1222890 MtrunA17_Chr1g0204391 25.000 352 200 11 203 523 84 402 3.99e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1222890 AT5G19210.2 69.688 353 104 1 208 560 122 471 0.0 529
Msa1222890 AT5G19210.2 55.714 70 31 0 66 135 52 121 2.28e-19 91.7
Msa1222890 AT5G19210.1 69.401 317 94 1 244 560 1 314 1.44e-166 476
Msa1222890 AT5G19210.3 69.401 317 94 1 244 560 1 314 1.44e-166 476
Msa1222890 AT1G12770.2 25.301 415 225 13 205 560 153 541 2.77e-23 104
Msa1222890 AT1G12770.1 25.301 415 225 13 205 560 153 541 2.77e-23 104
Msa1222890 AT3G58510.1 29.395 347 190 11 199 523 188 501 4.10e-21 97.8
Msa1222890 AT3G58510.3 29.395 347 190 11 199 523 188 501 4.10e-21 97.8
Msa1222890 AT3G58510.2 29.395 347 190 11 199 523 188 501 4.10e-21 97.8
Msa1222890 AT1G72730.1 25.876 371 230 13 196 561 77 407 9.78e-21 95.1
Msa1222890 AT3G58570.1 29.577 355 193 12 208 534 192 517 3.88e-20 94.7
Msa1222890 AT4G09730.1 27.397 365 215 14 208 553 158 491 5.83e-20 94.4
Msa1222890 AT5G63120.2 27.414 321 200 8 208 523 211 503 1.96e-19 92.4
Msa1222890 AT2G42520.2 29.762 336 187 12 208 523 205 511 2.17e-19 92.4
Msa1222890 AT2G42520.1 29.762 336 187 12 208 523 205 511 2.17e-19 92.4
Msa1222890 AT2G42520.3 29.762 336 187 12 208 523 205 511 2.17e-19 92.4
Msa1222890 AT5G60990.1 28.655 342 199 13 208 535 55 365 9.69e-19 89.7
Msa1222890 AT5G65900.1 28.440 327 200 10 203 523 195 493 1.44e-18 89.7
Msa1222890 AT3G18600.1 26.667 330 201 10 203 523 130 427 1.89e-18 89.4
Msa1222890 AT3G01540.4 29.819 332 177 11 208 523 204 495 2.59e-18 89.0
Msa1222890 AT3G01540.2 29.819 332 177 11 208 523 204 495 2.59e-18 89.0
Msa1222890 AT3G01540.3 29.819 332 177 11 208 523 204 495 2.59e-18 89.0
Msa1222890 AT3G01540.1 29.819 332 177 11 208 523 204 495 3.00e-18 89.0
Msa1222890 AT5G63630.1 26.608 342 201 13 203 524 95 406 4.76e-18 87.8
Msa1222890 AT5G63630.2 26.608 342 201 13 203 524 289 600 8.00e-18 87.8
Msa1222890 AT3G06480.1 26.647 334 203 8 208 532 481 781 9.15e-18 87.8
Msa1222890 AT1G77030.1 26.284 331 205 11 200 523 66 364 2.40e-17 86.3
Msa1222890 AT1G55150.2 26.203 374 229 13 163 523 123 462 5.06e-17 84.7
Msa1222890 AT1G55150.1 26.203 374 229 13 163 523 98 437 1.01e-16 83.6
Msa1222890 AT5G14610.7 28.571 322 194 10 208 523 76 367 1.03e-16 83.6
Msa1222890 AT5G14610.3 28.571 322 194 10 208 523 76 367 1.03e-16 83.6
Msa1222890 AT5G14610.6 28.261 322 195 10 208 523 207 498 1.11e-16 84.0
Msa1222890 AT5G14610.2 28.261 322 195 10 208 523 207 498 1.14e-16 84.0
Msa1222890 AT5G14610.5 28.261 322 195 10 208 523 215 506 1.24e-16 84.0
Msa1222890 AT5G14610.1 28.261 322 195 10 208 523 275 566 1.32e-16 84.0
Msa1222890 AT1G20920.2 28.571 343 194 14 208 536 237 542 4.88e-16 82.0
Msa1222890 AT1G20920.4 28.571 343 194 14 208 536 575 880 8.51e-16 81.6
Msa1222890 AT1G20920.6 28.571 343 194 14 208 536 575 880 8.51e-16 81.6
Msa1222890 AT1G20920.3 28.571 343 194 14 208 536 575 880 8.51e-16 81.6
Msa1222890 AT1G20920.7 28.571 343 194 14 208 536 575 880 8.51e-16 81.6
Msa1222890 AT1G20920.5 28.571 343 194 14 208 536 575 880 8.51e-16 81.6
Msa1222890 AT1G20920.1 28.571 343 194 14 208 536 575 880 8.51e-16 81.6
Msa1222890 AT5G05450.1 23.276 348 197 10 208 523 62 371 1.55e-15 80.1
Msa1222890 AT3G19760.1 24.545 330 202 11 203 523 76 367 2.26e-15 79.0
Msa1222890 AT5G11170.1 24.599 374 230 12 198 559 82 415 7.65e-15 77.4
Msa1222890 AT5G11200.1 24.599 374 230 12 198 559 82 415 7.65e-15 77.4
Msa1222890 AT3G16840.1 23.544 395 211 13 208 536 237 606 7.96e-15 78.2
Msa1222890 AT3G16840.2 23.544 395 211 13 208 536 238 607 8.61e-15 78.2
Msa1222890 AT5G11170.2 25.138 362 215 13 208 553 9 330 8.80e-15 76.3
Msa1222890 AT1G16280.1 26.966 356 211 13 208 552 104 421 9.99e-15 77.4
Msa1222890 AT2G33730.1 26.111 360 199 12 208 536 359 682 1.79e-14 77.0
Msa1222890 AT5G08620.1 26.377 345 198 14 203 524 121 432 2.16e-14 76.6
Msa1222890 AT5G08610.1 26.608 342 201 13 203 524 423 734 2.95e-14 76.6
Msa1222890 AT3G09720.2 23.602 322 205 11 208 523 187 473 1.14e-13 74.3
Msa1222890 AT3G09720.1 23.602 322 205 11 208 523 187 473 1.14e-13 74.3
Msa1222890 AT5G26742.1 25.150 334 204 10 203 523 143 443 1.88e-13 73.9
Msa1222890 AT5G26742.2 25.150 334 204 10 203 523 143 443 1.88e-13 73.9
Msa1222890 AT1G71370.1 24.850 334 200 11 208 523 62 362 2.58e-13 73.2
Msa1222890 AT5G26742.3 25.150 334 204 10 203 523 50 350 3.02e-13 73.2
Msa1222890 AT1G51380.1 24.771 327 205 10 203 523 63 354 3.47e-13 72.0
Msa1222890 AT3G22330.1 25.444 338 194 10 203 523 145 441 3.71e-13 72.8
Msa1222890 AT1G28180.1 25.806 372 213 12 208 561 19 345 6.39e-13 70.9
Msa1222890 AT5G62190.1 28.000 350 196 14 203 533 137 449 9.88e-13 71.6
Msa1222890 AT3G22310.2 25.076 327 209 7 203 523 157 453 1.90e-12 70.5
Msa1222890 AT3G22310.1 25.076 327 209 7 203 523 157 453 1.94e-12 70.5
Msa1222890 AT4G16630.1 27.928 333 191 14 204 523 209 505 8.96e-12 68.6
Msa1222890 AT3G02065.3 25.602 332 205 11 203 523 151 451 2.65e-11 66.6
Msa1222890 AT3G02065.2 25.602 332 205 11 203 523 151 451 2.65e-11 66.6
Msa1222890 AT5G54910.1 24.629 337 201 10 203 523 112 411 4.64e-11 66.2
Msa1222890 AT5G63120.3 26.027 292 183 8 208 494 211 474 8.82e-11 64.7
Msa1222890 AT5G63120.4 26.027 292 183 8 208 494 211 474 8.82e-11 64.7
Msa1222890 AT5G63120.5 26.027 292 183 8 208 494 211 474 8.82e-11 64.7
Msa1222890 AT3G02065.1 25.602 332 205 11 203 523 14 314 9.38e-11 64.3

Find 134 sgRNAs with CRISPR-Local

Find 409 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTATATGTGAGTCATTTC+TGG 0.194191 8_1:-87294745 None:intergenic
GATGAGGCAAAGCTTGTTTC+TGG 0.205005 8_1:-87290063 None:intergenic
AAAATTGCCTTTGGAGTAAT+TGG 0.210759 8_1:-87289921 None:intergenic
TTCTATCATAAACCATATTT+CGG 0.244050 8_1:-87290682 None:intergenic
TTTCTTATCTAGACAGGTTC+TGG 0.245869 8_1:+87290964 Msa1222890:intron
TAATGAGTTGGCCCGAAATA+TGG 0.250739 8_1:+87290670 Msa1222890:CDS
AAGGCACAAGAGTTGGTTTA+AGG 0.253619 8_1:+87291314 Msa1222890:CDS
CAGATCAAAGAAATAAAATA+AGG 0.258834 8_1:-87295023 None:intergenic
GTTAAAGCTCTCAATTTATA+TGG 0.260021 8_1:+87295072 Msa1222890:three_prime_UTR
AAAGTTGTCTTTCAAGCATT+TGG 0.274712 8_1:-87292134 None:intergenic
GAAGGTCTAGGTGAGGTTTA+TGG 0.299819 8_1:-87294937 None:intergenic
CCACCGGACTAACGTGAATA+TGG 0.305745 8_1:-87292934 None:intergenic
CGGATTGTATCAAGGATAAC+AGG 0.308643 8_1:-87293233 None:intergenic
TCTATCATAAACCATATTTC+GGG 0.318590 8_1:-87290681 None:intergenic
TGAAATTGAAGGTGGCTATC+TGG 0.334621 8_1:+87290487 Msa1222890:CDS
ACCATCATGGCTTTGTTAGA+TGG 0.349677 8_1:+87291279 Msa1222890:CDS
GTTAATGTTAGTGGAGTTGC+AGG 0.374214 8_1:-87289767 None:intergenic
TTTCTTCAATTCAGGAGGTT+AGG 0.380425 8_1:+87294665 Msa1222890:intron
GGAGGAATGGTGGGAGAAGT+AGG 0.391816 8_1:-87289835 None:intergenic
GCAGTCTGAGAAGTCGAAAA+AGG 0.395260 8_1:+87293958 Msa1222890:intron
ACGAAGCTGTGCAGCAGAAA+TGG 0.398801 8_1:+87292793 Msa1222890:CDS
AGTAACAGATACAGTATAGA+TGG 0.399989 8_1:+87289606 Msa1222890:exon
ACTGTTGCAACTACTATTGC+TGG 0.408826 8_1:-87292099 None:intergenic
TGAATTTGAAGATTGATAGT+AGG 0.408867 8_1:+87289573 Msa1222890:five_prime_UTR
TGCTCCCCTTCAACTCCTGT+TGG 0.415557 8_1:-87291246 None:intergenic
TGCTTGATGAAGATAATCTA+TGG 0.419150 8_1:-87294788 None:intergenic
CAATCCGATGCTCCCAAGTC+TGG 0.430922 8_1:+87293249 Msa1222890:CDS
AGTACAATTCACATCAGAAA+AGG 0.436765 8_1:-87294830 None:intergenic
TTTCAGATAAATACAATTTG+AGG 0.437886 8_1:-87294995 None:intergenic
TACCAAGGTTGCTAGGATAC+TGG 0.442206 8_1:+87291215 Msa1222890:CDS
AATATGAGGTCAAAATCTTC+CGG 0.442699 8_1:-87292704 None:intergenic
CATTATATTTGTTAGTGAGC+AGG 0.459913 8_1:+87293272 Msa1222890:CDS
TTGAAGATTGATAGTAGGAA+AGG 0.465479 8_1:+87289578 Msa1222890:five_prime_UTR
CATTGAGAAGGCACAAGAGT+TGG 0.474974 8_1:+87291307 Msa1222890:CDS
GGTTTCAGGATGGAAGAAGT+TGG 0.479405 8_1:+87290019 Msa1222890:intron
AGTAAGGAGAGTAGATCAGA+TGG 0.484851 8_1:+87290583 Msa1222890:CDS
CTCTGTCATTATGAAATTGA+AGG 0.485047 8_1:+87290476 Msa1222890:CDS
TTACTTGCATGCCAAGTTCA+CGG 0.485189 8_1:-87291071 None:intergenic
TTCTTATCTAGACAGGTTCT+GGG 0.487069 8_1:+87290965 Msa1222890:intron
TTGGTGCCCACCCGTGAACT+TGG 0.487776 8_1:+87291060 Msa1222890:CDS
TACTTGCATGCCAAGTTCAC+GGG 0.491088 8_1:-87291070 None:intergenic
GCAAAGCCAACAGGAGTTGA+AGG 0.491708 8_1:+87291240 Msa1222890:CDS
GCTTGGAACCTTGCGGGTGT+TGG 0.493949 8_1:+87292161 Msa1222890:CDS
TTGTTGTTGTGACGCGGTGG+TGG 0.495513 8_1:-87289789 None:intergenic
AACAAATATAATGCCAGACT+TGG 0.496013 8_1:-87293262 None:intergenic
AGATCAAAGAAATAAAATAA+GGG 0.499268 8_1:-87295022 None:intergenic
ATACTGGCTGCAAAGCCAAC+AGG 0.501290 8_1:+87291231 Msa1222890:CDS
AGATTTGGAAATTAATGAGT+TGG 0.503769 8_1:+87290658 Msa1222890:CDS
GTACAATTCACATCAGAAAA+GGG 0.505001 8_1:-87294829 None:intergenic
AGTAAAATATGTGAAGGTCT+AGG 0.506605 8_1:-87294949 None:intergenic
TGCCTTTGGAGTAATTGGTC+GGG 0.507382 8_1:-87289916 None:intergenic
ATAGATTATCTTCATCAAGC+AGG 0.508103 8_1:+87294790 Msa1222890:CDS
GCTTGTTTCTGGACCGGTGT+AGG 0.508652 8_1:-87290052 None:intergenic
GCGGTGGTGGTTAATGTTAG+TGG 0.513093 8_1:-87289776 None:intergenic
GGCAAAGCTTGTTTCTGGAC+CGG 0.513600 8_1:-87290058 None:intergenic
GATCCATATTCACGTTAGTC+CGG 0.519341 8_1:+87292931 Msa1222890:CDS
AGTCAAATCACTAGAGGCAG+AGG 0.519629 8_1:+87290611 Msa1222890:CDS
AAGGAGAGTAGATCAGATGG+AGG 0.521056 8_1:+87290586 Msa1222890:CDS
CACCAGCATTATAGTCTCGC+AGG 0.522768 8_1:+87294855 Msa1222890:CDS
TCATGTCATCTTCGAGGAGG+AGG 0.523824 8_1:-87294051 None:intergenic
TTGAAGGTGGCTATCTGGCT+TGG 0.524663 8_1:+87290492 Msa1222890:CDS
ATCAGAAAAGGGTTTCCTAC+AGG 0.525591 8_1:-87294818 None:intergenic
CGAGACGGCATGGGCTCCAC+CGG 0.526533 8_1:-87292950 None:intergenic
ATGAGATAGACGAGACGGCA+TGG 0.531411 8_1:-87292960 None:intergenic
AATGGTGGGAGAAGTAGGAT+TGG 0.533367 8_1:-87289830 None:intergenic
TTGCCTTTGGAGTAATTGGT+CGG 0.534699 8_1:-87289917 None:intergenic
TCCATCTAACAAAGCCATGA+TGG 0.537850 8_1:-87291280 None:intergenic
TGAAATTCATGTCATCTTCG+AGG 0.542019 8_1:-87294057 None:intergenic
CAAAGCAAGTGAGTTCTCTC+CGG 0.545982 8_1:+87292685 Msa1222890:CDS
AATGCCAGACTTGGGAGCAT+CGG 0.548051 8_1:-87293253 None:intergenic
TTCACGAGCAGCTTCTCTGT+TGG 0.548108 8_1:+87294081 Msa1222890:CDS
TGACTGCATACTTCATGCTC+AGG 0.549288 8_1:+87290099 Msa1222890:CDS
CCATATAAAATCCGAGTCAG+TGG 0.553262 8_1:-87290534 None:intergenic
ACAAGGTTACCAAGGTTGCT+AGG 0.555693 8_1:+87291208 Msa1222890:intron
ATGAAGTATGCAGTCACGAC+CGG 0.557707 8_1:-87290092 None:intergenic
GGGAGCATCGGATTGTATCA+AGG 0.557881 8_1:-87293241 None:intergenic
CTCCTGCGAGACTATAATGC+TGG 0.560387 8_1:-87294857 None:intergenic
ACTGTATCATCGTCTGCAGT+AGG 0.560564 8_1:-87289856 None:intergenic
AAAGTCAATCACAAGGGACG+TGG 0.566234 8_1:-87293996 None:intergenic
GCGGGTGTTGGTTGTTGATG+AGG 0.566555 8_1:+87292173 Msa1222890:CDS
TGAGATAGACGAGACGGCAT+GGG 0.566865 8_1:-87292959 None:intergenic
ATTCAGGAGGTTAGGAAAGG+TGG 0.567056 8_1:+87294673 Msa1222890:intron
GATGAAGAAAGAAAACGAAG+AGG 0.568181 8_1:-87289664 None:intergenic
TCAATTCAGGAGGTTAGGAA+AGG 0.571959 8_1:+87294670 Msa1222890:intron
GTGCTGTGGTATAGATGCAC+TGG 0.576066 8_1:-87292757 None:intergenic
TTGCATGCCAAGTTCACGGG+TGG 0.578362 8_1:-87291067 None:intergenic
CACAACAACAACAACTCCAC+AGG 0.578451 8_1:+87289801 Msa1222890:CDS
CAAAGCCAACAGGAGTTGAA+GGG 0.578993 8_1:+87291241 Msa1222890:CDS
TGTGCAGCAGAAATGGACTA+AGG 0.582058 8_1:+87292800 Msa1222890:CDS
ATCGTCTGCAGTAGGAGGAA+TGG 0.587479 8_1:-87289848 None:intergenic
AATGTTAGTGGAGTTGCAGG+AGG 0.587589 8_1:-87289764 None:intergenic
AGGAGAGTAGATCAGATGGA+GGG 0.590625 8_1:+87290587 Msa1222890:CDS
AGCCAGTATCCTAGCAACCT+TGG 0.595049 8_1:-87291217 None:intergenic
CATAATTGTCTGAGAGTGGT+GGG 0.595645 8_1:-87289880 None:intergenic
GTATCATCGTCTGCAGTAGG+AGG 0.597329 8_1:-87289853 None:intergenic
GCAAAGATCATGTACCATCA+TGG 0.597463 8_1:+87291266 Msa1222890:CDS
AAACTACAATTCCACTGACT+CGG 0.598532 8_1:+87290523 Msa1222890:CDS
ACAAATATAATGCCAGACTT+GGG 0.600019 8_1:-87293261 None:intergenic
GCATTATAGTCTCGCAGGAG+CGG 0.601083 8_1:+87294860 Msa1222890:CDS
ATCATGGCTTTGTTAGATGG+AGG 0.601394 8_1:+87291282 Msa1222890:CDS
TCAATCACAAGGGACGTGGA+TGG 0.602588 8_1:-87293992 None:intergenic
CCATATTCACGTTAGTCCGG+TGG 0.603339 8_1:+87292934 Msa1222890:CDS
GATCAGAGTAAAATATGTGA+AGG 0.606192 8_1:-87294955 None:intergenic
ATTTAATGACAAGGTTACCA+AGG 0.606643 8_1:+87291200 Msa1222890:intron
GTCTGCAGTAGGAGGAATGG+TGG 0.610529 8_1:-87289845 None:intergenic
TTCCCGACCAATTACTCCAA+AGG 0.611672 8_1:+87289914 Msa1222890:CDS
TAGATTATCTTCATCAAGCA+GGG 0.613532 8_1:+87294791 Msa1222890:CDS
GTTATTACAAGACGAATATG+AGG 0.618006 8_1:-87292718 None:intergenic
CAGGAGGTTAGGAAAGGTGG+CGG 0.618785 8_1:+87294676 Msa1222890:intron
TGTCATTATGAAATTGAAGG+TGG 0.621338 8_1:+87290479 Msa1222890:CDS
GTAGGATTGGCAATGGCCTG+TGG 0.626381 8_1:-87289817 None:intergenic
TGGATATGTCATGCCTACAC+CGG 0.628469 8_1:+87290039 Msa1222890:CDS
GCAACAGATGTAGCAGCTAG+AGG 0.629003 8_1:+87294712 Msa1222890:CDS
GGGAGAAGTAGGATTGGCAA+TGG 0.629294 8_1:-87289824 None:intergenic
ATCAAGCAGGGAGGACCTGT+AGG 0.629511 8_1:+87294803 Msa1222890:CDS
AGAGATATGAAAATGAGTTG+AGG 0.645209 8_1:+87294893 Msa1222890:CDS
TTAAGAAATCGATTGTGCTG+TGG 0.645279 8_1:-87292771 None:intergenic
TAGATGGAGGAACATTGAGA+AGG 0.646333 8_1:+87291295 Msa1222890:CDS
ATCAACAACCAACACCCGCA+AGG 0.646378 8_1:-87292169 None:intergenic
TGCATGCCAAGTTCACGGGT+GGG 0.647137 8_1:-87291066 None:intergenic
AATCTATGAGATAGACGAGA+CGG 0.648321 8_1:-87292965 None:intergenic
AAAGCCAACAGGAGTTGAAG+GGG 0.649551 8_1:+87291242 Msa1222890:CDS
ACATAATTGTCTGAGAGTGG+TGG 0.655527 8_1:-87289881 None:intergenic
AATATGTGAAGGTCTAGGTG+AGG 0.663605 8_1:-87294944 None:intergenic
TCTGCAGTAGGAGGAATGGT+GGG 0.664914 8_1:-87289844 None:intergenic
TTGTTGTTGTTGTGACGCGG+TGG 0.674980 8_1:-87289792 None:intergenic
GTTGCAACTACTATTGCTGG+AGG 0.676385 8_1:-87292096 None:intergenic
AATTCATGTCATCTTCGAGG+AGG 0.678357 8_1:-87294054 None:intergenic
TTGACATAATTGTCTGAGAG+TGG 0.679864 8_1:-87289884 None:intergenic
GGATTGTATCAAGGATAACA+GGG 0.686516 8_1:-87293232 None:intergenic
GAGGGTAGTCAAATCACTAG+AGG 0.686835 8_1:+87290605 Msa1222890:CDS
GAGTTGTTGTTGTTGTGACG+CGG 0.703017 8_1:-87289795 None:intergenic
ATAATTGTCTGAGAGTGGTG+GGG 0.713559 8_1:-87289879 None:intergenic
ATTATCTTCATCAAGCAGGG+AGG 0.725433 8_1:+87294794 Msa1222890:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATAATAATAAGGAATAA+TGG - chr8_1:87289954-87289973 None:intergenic 10.0%
!! ATTATAAAACTTAAACAAAA+TGG - chr8_1:87289997-87290016 None:intergenic 10.0%
!!! TTTGTTTAAGTTTTATAATA+TGG + chr8_1:87289998-87290017 Msa1222890:intron 10.0%
!!! AATATTTGTTTTTTTTATGA+TGG + chr8_1:87290396-87290415 Msa1222890:intron 10.0%
!! AAAAAATATATTTAATGACA+AGG + chr8_1:87291191-87291210 Msa1222890:intron 10.0%
!! TCTAGATAAGAAATAAAATA+AGG - chr8_1:87290957-87290976 None:intergenic 15.0%
!! TATTTATAATCAAATAGATG+TGG + chr8_1:87291380-87291399 Msa1222890:intron 15.0%
!!! TTTTAAGTCTTATATTTCAT+TGG + chr8_1:87291781-87291800 Msa1222890:intron 15.0%
!! AAATATAAAAATATAAAGCC+TGG + chr8_1:87292549-87292568 Msa1222890:intron 15.0%
!! AGATCAAAGAAATAAAATAA+GGG - chr8_1:87295025-87295044 None:intergenic 15.0%
!!! TAATAAGGAATAATGGAAAA+GGG - chr8_1:87289947-87289966 None:intergenic 20.0%
!!! ATAATAAGGAATAATGGAAA+AGG - chr8_1:87289948-87289967 None:intergenic 20.0%
!!! AAGTTTTATAATATGGTTTC+AGG + chr8_1:87290005-87290024 Msa1222890:intron 20.0%
!!! ATTTGTTTTTTTTATGATGG+TGG + chr8_1:87290399-87290418 Msa1222890:intron 20.0%
!! AAAAACTATTAGCAAAGATT+TGG + chr8_1:87290643-87290662 Msa1222890:CDS 20.0%
!! TTCTATCATAAACCATATTT+CGG - chr8_1:87290685-87290704 None:intergenic 20.0%
!!! TTGTTGAAATCATTTTAGAT+AGG + chr8_1:87290770-87290789 Msa1222890:intron 20.0%
!!! ATTTTATTTCTTATCTAGAC+AGG + chr8_1:87290958-87290977 Msa1222890:intron 20.0%
!!! AGATTTTCTTGTGTTAATAA+TGG - chr8_1:87291022-87291041 None:intergenic 20.0%
!! AAGCAATTATAGAAAGATAA+TGG - chr8_1:87292334-87292353 None:intergenic 20.0%
!! TATGCTAAATAACACTATTA+AGG - chr8_1:87292451-87292470 None:intergenic 20.0%
!! ATATAGAATGGTTTAAACTT+GGG + chr8_1:87293115-87293134 Msa1222890:intron 20.0%
!!! TATTCAATTTTTCAATCATC+AGG + chr8_1:87293182-87293201 Msa1222890:intron 20.0%
!! ATTAATTACGAAAAAGCTAA+TGG - chr8_1:87293513-87293532 None:intergenic 20.0%
!! ATAACTTTATCATATTACCT+GGG - chr8_1:87293909-87293928 None:intergenic 20.0%
!!! TTTCTAAAAACATCATATCA+TGG + chr8_1:87294016-87294035 Msa1222890:CDS 20.0%
!! ATCCATATCAATCAATTAAA+TGG - chr8_1:87294113-87294132 None:intergenic 20.0%
!! TTTAATTGATTGATATGGAT+TGG + chr8_1:87294113-87294132 Msa1222890:intron 20.0%
!! TAGACTGAAACAATATAATT+TGG - chr8_1:87294304-87294323 None:intergenic 20.0%
!! TTTCAGATAAATACAATTTG+AGG - chr8_1:87294998-87295017 None:intergenic 20.0%
!! CAGATCAAAGAAATAAAATA+AGG - chr8_1:87295026-87295045 None:intergenic 20.0%
!! TGAATTTGAAGATTGATAGT+AGG + chr8_1:87289573-87289592 Msa1222890:five_prime_UTR 25.0%
! TTTATAATATGGTTTCAGGA+TGG + chr8_1:87290009-87290028 Msa1222890:intron 25.0%
!!! TTCATTTCTTATTTGCTATG+TGG + chr8_1:87290225-87290244 Msa1222890:intron 25.0%
!! TTCAACATACAAGTTTTCAA+AGG + chr8_1:87290345-87290364 Msa1222890:intron 25.0%
!! ATGGTTGAAATCATTTTATG+TGG + chr8_1:87290553-87290572 Msa1222890:CDS 25.0%
!! TTTATGTGGATTTTGTAGTA+AGG + chr8_1:87290567-87290586 Msa1222890:CDS 25.0%
!! TCTTTGCTAATAGTTTTTCT+AGG - chr8_1:87290641-87290660 None:intergenic 25.0%
! AGATTTGGAAATTAATGAGT+TGG + chr8_1:87290658-87290677 Msa1222890:CDS 25.0%
! TCTATCATAAACCATATTTC+GGG - chr8_1:87290684-87290703 None:intergenic 25.0%
! TGGTTTATGATAGAACATTA+TGG + chr8_1:87290690-87290709 Msa1222890:intron 25.0%
!!! ATTTTAGATAGGCACTTTTT+TGG + chr8_1:87290781-87290800 Msa1222890:intron 25.0%
!!! TTTTAGATAGGCACTTTTTT+GGG + chr8_1:87290782-87290801 Msa1222890:intron 25.0%
!! CTTCAATGAGTTGTATTTTA+TGG + chr8_1:87291357-87291376 Msa1222890:intron 25.0%
! GTTTCGATACAATTATTTAC+TGG + chr8_1:87291688-87291707 Msa1222890:intron 25.0%
! TTATAAGTTTGTGATGCATA+TGG + chr8_1:87291811-87291830 Msa1222890:intron 25.0%
!! GTTTTGTGTATTTGATATGT+TGG + chr8_1:87291891-87291910 Msa1222890:intron 25.0%
!! GATCAACTTTCTTCAATTTT+AGG + chr8_1:87292068-87292087 Msa1222890:intron 25.0%
!! CTTTTTATTCTTATCTGCTT+AGG + chr8_1:87292641-87292660 Msa1222890:intron 25.0%
!!! TGTTGGTCTTTTTTTTTACA+TGG + chr8_1:87292850-87292869 Msa1222890:intron 25.0%
! AAACAGTCAGAATGAATTTA+AGG - chr8_1:87292892-87292911 None:intergenic 25.0%
! GTTACAAGTGCATTAAAAAA+AGG - chr8_1:87293064-87293083 None:intergenic 25.0%
! GATATAGAATGGTTTAAACT+TGG + chr8_1:87293114-87293133 Msa1222890:intron 25.0%
! TTGATGAGTAATCAAATTGA+AGG - chr8_1:87293330-87293349 None:intergenic 25.0%
! CAATTTGATTACTCATCAAT+TGG + chr8_1:87293331-87293350 Msa1222890:intron 25.0%
! CACAAAATAACACTATAACA+TGG - chr8_1:87293568-87293587 None:intergenic 25.0%
!! AACCTCTTTTGTAAAAAACA+GGG + chr8_1:87293646-87293665 Msa1222890:intron 25.0%
! ATACTATTTGCTTGAAAATG+AGG - chr8_1:87293793-87293812 None:intergenic 25.0%
!!! CATTTTCAAGCAAATAGTAT+AGG + chr8_1:87293793-87293812 Msa1222890:intron 25.0%
! GATAACTTTATCATATTACC+TGG - chr8_1:87293910-87293929 None:intergenic 25.0%
!!! TTTTAGAAAGTCAATCACAA+GGG - chr8_1:87294005-87294024 None:intergenic 25.0%
!!! TTTTTAGAAAGTCAATCACA+AGG - chr8_1:87294006-87294025 None:intergenic 25.0%
!! TGCCATTTAATTGATTGATA+TGG + chr8_1:87294108-87294127 Msa1222890:intron 25.0%
! ACATGAAAATCAATAATGCA+AGG - chr8_1:87294172-87294191 None:intergenic 25.0%
!!! TTGCATTATTGATTTTCATG+TGG + chr8_1:87294171-87294190 Msa1222890:intron 25.0%
! GATTAATGGCAAAATGAATT+TGG - chr8_1:87294201-87294220 None:intergenic 25.0%
! ATACAAGTCAAACTCTTATT+TGG + chr8_1:87294274-87294293 Msa1222890:intron 25.0%
! AATCTTTGATATTGTTTCCT+TGG + chr8_1:87294372-87294391 Msa1222890:intron 25.0%
!! GAACATTTAGTTCAAAAGTT+GGG + chr8_1:87294448-87294467 Msa1222890:intron 25.0%
!!! CTTAATATGCATTTTGATGA+GGG - chr8_1:87294530-87294549 None:intergenic 25.0%
! GTTAAAGCTCTCAATTTATA+TGG + chr8_1:87295072-87295091 Msa1222890:three_prime_UTR 25.0%
! TTGAAGATTGATAGTAGGAA+AGG + chr8_1:87289578-87289597 Msa1222890:five_prime_UTR 30.0%
AGTAACAGATACAGTATAGA+TGG + chr8_1:87289606-87289625 Msa1222890:exon 30.0%
AAGAAGAAGAAGAAGAAGTT+GGG - chr8_1:87289696-87289715 None:intergenic 30.0%
!! AAAATTGCCTTTGGAGTAAT+TGG - chr8_1:87289924-87289943 None:intergenic 30.0%
CTCTGTCATTATGAAATTGA+AGG + chr8_1:87290476-87290495 Msa1222890:CDS 30.0%
TGTCATTATGAAATTGAAGG+TGG + chr8_1:87290479-87290498 Msa1222890:CDS 30.0%
!! TTGTTATTTCATGGATGGAT+CGG - chr8_1:87290919-87290938 None:intergenic 30.0%
TCCATCCATGAAATAACAAA+AGG + chr8_1:87290920-87290939 Msa1222890:intron 30.0%
CCATCCATGAAATAACAAAA+GGG + chr8_1:87290921-87290940 Msa1222890:intron 30.0%
!!! ATCTCCCTTTTGTTATTTCA+TGG - chr8_1:87290928-87290947 None:intergenic 30.0%
ATGAAATAACAAAAGGGAGA+TGG + chr8_1:87290927-87290946 Msa1222890:intron 30.0%
!! TTCTTTTCAAGCACTAGTTT+TGG + chr8_1:87291041-87291060 Msa1222890:CDS 30.0%
ATCTTTGATGCAACATATCA+AGG + chr8_1:87291134-87291153 Msa1222890:intron 30.0%
TCTTTGATGCAACATATCAA+GGG + chr8_1:87291135-87291154 Msa1222890:intron 30.0%
ATTTAATGACAAGGTTACCA+AGG + chr8_1:87291200-87291219 Msa1222890:intron 30.0%
CAATTATTATCAGTGAGATG+TGG - chr8_1:87291572-87291591 None:intergenic 30.0%
CTATTGCAGCATAAAAAGAA+AGG - chr8_1:87291644-87291663 None:intergenic 30.0%
GGTACTTATATACCACAATT+TGG - chr8_1:87291746-87291765 None:intergenic 30.0%
TTTGTGATGCATATGGTTAA+TGG + chr8_1:87291818-87291837 Msa1222890:intron 30.0%
AAATACACAAAACACACACA+AGG - chr8_1:87291884-87291903 None:intergenic 30.0%
! CAGAGCTATTATATAGCTTT+TGG - chr8_1:87291944-87291963 None:intergenic 30.0%
ATAAAAAGCAACGTTAACAG+AGG - chr8_1:87291978-87291997 None:intergenic 30.0%
AAAGTTGTCTTTCAAGCATT+TGG - chr8_1:87292137-87292156 None:intergenic 30.0%
!! ATTGTATACTTGTGCTGTTT+AGG + chr8_1:87292233-87292252 Msa1222890:intron 30.0%
!! TTGTATACTTGTGCTGTTTA+GGG + chr8_1:87292234-87292253 Msa1222890:intron 30.0%
TTTAGCTACATTAGATCACA+TGG - chr8_1:87292401-87292420 None:intergenic 30.0%
CTCAACACAAAATTTCCAAA+AGG - chr8_1:87292524-87292543 None:intergenic 30.0%
AGGGAACTAAAAAAGAAGTT+GGG - chr8_1:87292594-87292613 None:intergenic 30.0%
AAGGGAACTAAAAAAGAAGT+TGG - chr8_1:87292595-87292614 None:intergenic 30.0%
GTACTTACAAAATTGCTCAA+GGG - chr8_1:87292613-87292632 None:intergenic 30.0%
AGTACTTACAAAATTGCTCA+AGG - chr8_1:87292614-87292633 None:intergenic 30.0%
AATATGAGGTCAAAATCTTC+CGG - chr8_1:87292707-87292726 None:intergenic 30.0%
GTTATTACAAGACGAATATG+AGG - chr8_1:87292721-87292740 None:intergenic 30.0%
TGATTCGTCTGATTATTTGT+TGG + chr8_1:87292833-87292852 Msa1222890:intron 30.0%
TATATCTTTCCAAGGTCAAA+GGG - chr8_1:87293100-87293119 None:intergenic 30.0%
AACCATTCTATATCTTTCCA+AGG - chr8_1:87293108-87293127 None:intergenic 30.0%
TCTCTTATAAATACCCATGT+TGG + chr8_1:87293138-87293157 Msa1222890:intron 30.0%
CTCTTATAAATACCCATGTT+GGG + chr8_1:87293139-87293158 Msa1222890:intron 30.0%
AATTTACTAATGCCCAACAT+GGG - chr8_1:87293154-87293173 None:intergenic 30.0%
AAATTTACTAATGCCCAACA+TGG - chr8_1:87293155-87293174 None:intergenic 30.0%
ACAAATATAATGCCAGACTT+GGG - chr8_1:87293264-87293283 None:intergenic 30.0%
AACAAATATAATGCCAGACT+TGG - chr8_1:87293265-87293284 None:intergenic 30.0%
! CATTATATTTGTTAGTGAGC+AGG + chr8_1:87293272-87293291 Msa1222890:CDS 30.0%
ATGAGTAATCAAATTGAAGG+AGG - chr8_1:87293327-87293346 None:intergenic 30.0%
!!! TAGTGTTATTTTGTGCTCAA+CGG + chr8_1:87293573-87293592 Msa1222890:intron 30.0%
! GAACCTCTTTTGTAAAAAAC+AGG + chr8_1:87293645-87293664 Msa1222890:intron 30.0%
!!! TACCCTGTTTTTTACAAAAG+AGG - chr8_1:87293651-87293670 None:intergenic 30.0%
! CTTTTGTAAAAAACAGGGTA+AGG + chr8_1:87293651-87293670 Msa1222890:intron 30.0%
GGTTACTACAATATACCAAA+CGG + chr8_1:87293672-87293691 Msa1222890:intron 30.0%
! GTTTGGGGTAATAATTTCAA+TGG - chr8_1:87293858-87293877 None:intergenic 30.0%
CAAGGATACTAGAAAATTAG+AGG - chr8_1:87294154-87294173 None:intergenic 30.0%
AATGGCAAAATGAATTTGGA+TGG - chr8_1:87294197-87294216 None:intergenic 30.0%
! TTCATTTTGCCATTAATCCA+TGG + chr8_1:87294203-87294222 Msa1222890:intron 30.0%
! TCATTTTGCCATTAATCCAT+GGG + chr8_1:87294204-87294223 Msa1222890:intron 30.0%
! ATTATTCACCCATGGATTAA+TGG - chr8_1:87294215-87294234 None:intergenic 30.0%
TGTATTAGATTATTCACCCA+TGG - chr8_1:87294223-87294242 None:intergenic 30.0%
! GGAACATTTAGTTCAAAAGT+TGG + chr8_1:87294447-87294466 Msa1222890:intron 30.0%
!! GCTTAATATGCATTTTGATG+AGG - chr8_1:87294531-87294550 None:intergenic 30.0%
!! AAATGCTGTTTCTTCAATTC+AGG + chr8_1:87294597-87294616 Msa1222890:intron 30.0%
! GTAATGACTAGTGTTGAAAA+GGG + chr8_1:87294622-87294641 Msa1222890:intron 30.0%
TTGTATATGTGAGTCATTTC+TGG - chr8_1:87294748-87294767 None:intergenic 30.0%
! AGATAATCTATGGCAGTTTT+TGG - chr8_1:87294781-87294800 None:intergenic 30.0%
TGCTTGATGAAGATAATCTA+TGG - chr8_1:87294791-87294810 None:intergenic 30.0%
ATAGATTATCTTCATCAAGC+AGG + chr8_1:87294790-87294809 Msa1222890:CDS 30.0%
TAGATTATCTTCATCAAGCA+GGG + chr8_1:87294791-87294810 Msa1222890:CDS 30.0%
GTACAATTCACATCAGAAAA+GGG - chr8_1:87294832-87294851 None:intergenic 30.0%
AGTACAATTCACATCAGAAA+AGG - chr8_1:87294833-87294852 None:intergenic 30.0%
AGAGATATGAAAATGAGTTG+AGG + chr8_1:87294893-87294912 Msa1222890:CDS 30.0%
AGTAAAATATGTGAAGGTCT+AGG - chr8_1:87294952-87294971 None:intergenic 30.0%
GATCAGAGTAAAATATGTGA+AGG - chr8_1:87294958-87294977 None:intergenic 30.0%
GATGAAGAAAGAAAACGAAG+AGG - chr8_1:87289667-87289686 None:intergenic 35.0%
GAAGAAGAAGAAGAAGAAGT+TGG - chr8_1:87289697-87289716 None:intergenic 35.0%
TTGACATAATTGTCTGAGAG+TGG - chr8_1:87289887-87289906 None:intergenic 35.0%
AGCAATGAGAAGATACGAAT+CGG - chr8_1:87290156-87290175 None:intergenic 35.0%
ATGAGACAGAAGAACAACTT+AGG + chr8_1:87290279-87290298 Msa1222890:intron 35.0%
ACAGAAGAACAACTTAGGTT+GGG + chr8_1:87290284-87290303 Msa1222890:intron 35.0%
TACTAGACATGTTCCCAATA+CGG - chr8_1:87290431-87290450 None:intergenic 35.0%
! AAACTACAATTCCACTGACT+CGG + chr8_1:87290523-87290542 Msa1222890:CDS 35.0%
TTGTATCATGTGCAGAAGAA+AGG - chr8_1:87290816-87290835 None:intergenic 35.0%
GTATATCCTACCATGTTGTT+CGG + chr8_1:87290867-87290886 Msa1222890:intron 35.0%
TATATCCTACCATGTTGTTC+GGG + chr8_1:87290868-87290887 Msa1222890:intron 35.0%
!! TGTTATTTCATGGATGGATC+GGG - chr8_1:87290918-87290937 None:intergenic 35.0%
!!! CCCTTTTGTTATTTCATGGA+TGG - chr8_1:87290924-87290943 None:intergenic 35.0%
TTTCTTATCTAGACAGGTTC+TGG + chr8_1:87290964-87290983 Msa1222890:intron 35.0%
TTCTTATCTAGACAGGTTCT+GGG + chr8_1:87290965-87290984 Msa1222890:intron 35.0%
CTTTGATGCAACATATCAAG+GGG + chr8_1:87291136-87291155 Msa1222890:intron 35.0%
TAGATGTGGTGACTAACAAA+TGG + chr8_1:87291394-87291413 Msa1222890:intron 35.0%
CTCGAATGTCAATCAAGTTT+AGG + chr8_1:87291611-87291630 Msa1222890:intron 35.0%
TGTATCGAAACAAACACAAC+AGG - chr8_1:87291679-87291698 None:intergenic 35.0%
ATATACCACAATTTGGCCAA+CGG - chr8_1:87291739-87291758 None:intergenic 35.0%
GTATATAAGTACCATGCTCT+TGG + chr8_1:87291753-87291772 Msa1222890:intron 35.0%
TGATGCATATGGTTAATGGA+TGG + chr8_1:87291822-87291841 Msa1222890:intron 35.0%
! GATGCATATGGTTAATGGAT+GGG + chr8_1:87291823-87291842 Msa1222890:intron 35.0%
! ATGCATATGGTTAATGGATG+GGG + chr8_1:87291824-87291843 Msa1222890:intron 35.0%
TTGATATGTTGGACCTATGT+TGG + chr8_1:87291902-87291921 Msa1222890:intron 35.0%
TGATATGTTGGACCTATGTT+GGG + chr8_1:87291903-87291922 Msa1222890:intron 35.0%
TTCAAACCATTTCCCAACAT+AGG - chr8_1:87291918-87291937 None:intergenic 35.0%
!!! GAAAGACAACTTTTTTCGCT+TGG + chr8_1:87292144-87292163 Msa1222890:CDS 35.0%
TTCTCTTCGCATTTGAATTG+TGG + chr8_1:87292204-87292223 Msa1222890:intron 35.0%
TCACATGGATAGATGAGAAT+GGG - chr8_1:87292386-87292405 None:intergenic 35.0%
ATCACATGGATAGATGAGAA+TGG - chr8_1:87292387-87292406 None:intergenic 35.0%
ATTTCCACATTTCCATGAGT+CGG + chr8_1:87292483-87292502 Msa1222890:intron 35.0%
! AAGGGGTTTTTCATACCTTT+TGG + chr8_1:87292506-87292525 Msa1222890:intron 35.0%
AAAAAAGAAGTTGGGAGACA+GGG - chr8_1:87292586-87292605 None:intergenic 35.0%
TAAAAAAGAAGTTGGGAGAC+AGG - chr8_1:87292587-87292606 None:intergenic 35.0%
TTAAGAAATCGATTGTGCTG+TGG - chr8_1:87292774-87292793 None:intergenic 35.0%
AATCTATGAGATAGACGAGA+CGG - chr8_1:87292968-87292987 None:intergenic 35.0%
CTATATCTTTCCAAGGTCAA+AGG - chr8_1:87293101-87293120 None:intergenic 35.0%
GACCTTGGAAAGATATAGAA+TGG + chr8_1:87293103-87293122 Msa1222890:intron 35.0%
GGATTGTATCAAGGATAACA+GGG - chr8_1:87293235-87293254 None:intergenic 35.0%
AGTAATCAAATTGAAGGAGG+AGG - chr8_1:87293324-87293343 None:intergenic 35.0%
TTACAAAAGAGGTTCTTTCC+AGG - chr8_1:87293640-87293659 None:intergenic 35.0%
ACTACAATATACCAAACGGT+AGG + chr8_1:87293676-87293695 Msa1222890:intron 35.0%
ATTAACTCCCAAGCATCTAA+TGG - chr8_1:87293756-87293775 None:intergenic 35.0%
CAAGCAAATAGTATAGGACT+TGG + chr8_1:87293799-87293818 Msa1222890:intron 35.0%
ACATTAAATGCACACGTTTG+GGG - chr8_1:87293873-87293892 None:intergenic 35.0%
GACATTAAATGCACACGTTT+GGG - chr8_1:87293874-87293893 None:intergenic 35.0%
AGACATTAAATGCACACGTT+TGG - chr8_1:87293875-87293894 None:intergenic 35.0%
TGAAATTCATGTCATCTTCG+AGG - chr8_1:87294060-87294079 None:intergenic 35.0%
CTTTGATATTGTTTCCTTGG+AGG + chr8_1:87294375-87294394 Msa1222890:intron 35.0%
AGAACGATGTTTATCCTCAA+GGG + chr8_1:87294426-87294445 Msa1222890:intron 35.0%
TTGAACTAAATGTTCCCTTG+AGG - chr8_1:87294443-87294462 None:intergenic 35.0%
TTCAAAAGTTGGGATGTCTT+TGG + chr8_1:87294458-87294477 Msa1222890:intron 35.0%
AATGCATATTAAGCCTAGTG+CGG + chr8_1:87294537-87294556 Msa1222890:intron 35.0%
! GGTAATGACTAGTGTTGAAA+AGG + chr8_1:87294621-87294640 Msa1222890:intron 35.0%
!! GTTTGCTGTTTCTTCAATTC+AGG + chr8_1:87294657-87294676 Msa1222890:intron 35.0%
TTTCTTCAATTCAGGAGGTT+AGG + chr8_1:87294665-87294684 Msa1222890:intron 35.0%
GTTAATGTTAGTGGAGTTGC+AGG - chr8_1:87289770-87289789 None:intergenic 40.0%
ATAATTGTCTGAGAGTGGTG+GGG - chr8_1:87289882-87289901 None:intergenic 40.0%
CATAATTGTCTGAGAGTGGT+GGG - chr8_1:87289883-87289902 None:intergenic 40.0%
ACATAATTGTCTGAGAGTGG+TGG - chr8_1:87289884-87289903 None:intergenic 40.0%
!! TTGCCTTTGGAGTAATTGGT+CGG - chr8_1:87289920-87289939 None:intergenic 40.0%
GGAAAAGGGAAAATTGCCTT+TGG - chr8_1:87289933-87289952 None:intergenic 40.0%
!!! GCTTTGCCTCATCTTTTTTC+CGG + chr8_1:87290073-87290092 Msa1222890:CDS 40.0%
! TCTCATTGCTGTTGTTGTTG+TGG + chr8_1:87290166-87290185 Msa1222890:intron 40.0%
! TTTACTCACTCAGGAGTGTA+AGG - chr8_1:87290260-87290279 None:intergenic 40.0%
TCTGTCTCATTTACTCACTC+AGG - chr8_1:87290269-87290288 None:intergenic 40.0%
GACAGAAGAACAACTTAGGT+TGG + chr8_1:87290283-87290302 Msa1222890:intron 40.0%
!! AAGAACAACTTAGGTTGGGA+GGG + chr8_1:87290288-87290307 Msa1222890:intron 40.0%
TGAAATTGAAGGTGGCTATC+TGG + chr8_1:87290487-87290506 Msa1222890:CDS 40.0%
!!! GTGGAATTGTAGTTTTGTGC+AGG - chr8_1:87290518-87290537 None:intergenic 40.0%
CCATATAAAATCCGAGTCAG+TGG - chr8_1:87290537-87290556 None:intergenic 40.0%
!!! CCACTGACTCGGATTTTATA+TGG + chr8_1:87290534-87290553 Msa1222890:CDS 40.0%
AGTAAGGAGAGTAGATCAGA+TGG + chr8_1:87290583-87290602 Msa1222890:CDS 40.0%
! TAATGAGTTGGCCCGAAATA+TGG + chr8_1:87290670-87290689 Msa1222890:CDS 40.0%
! AAGCCTTATCCCACTAATTG+GGG - chr8_1:87290739-87290758 None:intergenic 40.0%
! CAAGCCTTATCCCACTAATT+GGG - chr8_1:87290740-87290759 None:intergenic 40.0%
ATCATGTGCAGAAGAAAGGA+AGG - chr8_1:87290812-87290831 None:intergenic 40.0%
! GTTATTTCATGGATGGATCG+GGG - chr8_1:87290917-87290936 None:intergenic 40.0%
TTACTTGCATGCCAAGTTCA+CGG - chr8_1:87291074-87291093 None:intergenic 40.0%
! CAGTCATTTGCCTTTTCCAA+GGG - chr8_1:87291166-87291185 None:intergenic 40.0%
! TCAGTCATTTGCCTTTTCCA+AGG - chr8_1:87291167-87291186 None:intergenic 40.0%
GCAAAGATCATGTACCATCA+TGG + chr8_1:87291266-87291285 Msa1222890:CDS 40.0%
!! ACCATCATGGCTTTGTTAGA+TGG + chr8_1:87291279-87291298 Msa1222890:CDS 40.0%
TCCATCTAACAAAGCCATGA+TGG - chr8_1:87291283-87291302 None:intergenic 40.0%
!! ATCATGGCTTTGTTAGATGG+AGG + chr8_1:87291282-87291301 Msa1222890:CDS 40.0%
TAGATGGAGGAACATTGAGA+AGG + chr8_1:87291295-87291314 Msa1222890:CDS 40.0%
! AAGGCACAAGAGTTGGTTTA+AGG + chr8_1:87291314-87291333 Msa1222890:CDS 40.0%
TCCATTGCAATTGCATTGCA+CGG - chr8_1:87291423-87291442 None:intergenic 40.0%
TTAACTTTACATCTCGCCGT+TGG + chr8_1:87291720-87291739 Msa1222890:intron 40.0%
TATAAGTACCATGCTCTTGG+AGG + chr8_1:87291756-87291775 Msa1222890:intron 40.0%
TTAAAACACCTCCAAGAGCA+TGG - chr8_1:87291767-87291786 None:intergenic 40.0%
! TGCATATGGTTAATGGATGG+GGG + chr8_1:87291825-87291844 Msa1222890:intron 40.0%
AAAAGCAACGTTAACAGAGG+TGG - chr8_1:87291975-87291994 None:intergenic 40.0%
ACTGTTGCAACTACTATTGC+TGG - chr8_1:87292102-87292121 None:intergenic 40.0%
!!! TTTTTTCGCTTGGAACCTTG+CGG + chr8_1:87292154-87292173 Msa1222890:CDS 40.0%
AGAATCACTGAAGGCAAATC+TGG - chr8_1:87292282-87292301 None:intergenic 40.0%
TACACACACAGAATCACTGA+AGG - chr8_1:87292291-87292310 None:intergenic 40.0%
GACAGGGCTTATATAATTCC+AGG - chr8_1:87292570-87292589 None:intergenic 40.0%
!!! TGACTGTTTTTGCTTTCCAG+AGG + chr8_1:87292903-87292922 Msa1222890:intron 40.0%
!!! GACTGTTTTTGCTTTCCAGA+GGG + chr8_1:87292904-87292923 Msa1222890:intron 40.0%
GATCCATATTCACGTTAGTC+CGG + chr8_1:87292931-87292950 Msa1222890:CDS 40.0%
CGGATTGTATCAAGGATAAC+AGG - chr8_1:87293236-87293255 None:intergenic 40.0%
TTCAGAACATTTGTCCTGTG+AGG + chr8_1:87293436-87293455 Msa1222890:intron 40.0%
! AACTATTTCTCATGCCTCAC+AGG - chr8_1:87293453-87293472 None:intergenic 40.0%
GTTGTTGTCATGTGACTGAA+AGG + chr8_1:87293600-87293619 Msa1222890:intron 40.0%
CGCATATCCATTAGATGCTT+GGG + chr8_1:87293746-87293765 Msa1222890:intron 40.0%
AATTCATGTCATCTTCGAGG+AGG - chr8_1:87294057-87294076 None:intergenic 40.0%
TTTCAGTCTACCCGATTAAC+TGG + chr8_1:87294314-87294333 Msa1222890:intron 40.0%
TTCAGTCTACCCGATTAACT+GGG + chr8_1:87294315-87294334 Msa1222890:intron 40.0%
AACCGATGTTCCCAGTTAAT+CGG - chr8_1:87294328-87294347 None:intergenic 40.0%
!! TAACTGGGAACATCGGTTTA+AGG + chr8_1:87294330-87294349 Msa1222890:intron 40.0%
TGATATTGTTTCCTTGGAGG+AGG + chr8_1:87294378-87294397 Msa1222890:intron 40.0%
GATATTGTTTCCTTGGAGGA+GGG + chr8_1:87294379-87294398 Msa1222890:intron 40.0%
ATATTGTTTCCTTGGAGGAG+GGG + chr8_1:87294380-87294399 Msa1222890:intron 40.0%
GAGAACGATGTTTATCCTCA+AGG + chr8_1:87294425-87294444 Msa1222890:intron 40.0%
AGTAGCACTCATGAAACCTT+GGG - chr8_1:87294494-87294513 None:intergenic 40.0%
!! TGCTGTTTCTTCAATTCAGG+AGG + chr8_1:87294600-87294619 Msa1222890:intron 40.0%
! TGACTAGTGTTGAAAAGGGA+TGG + chr8_1:87294626-87294645 Msa1222890:intron 40.0%
!! TGCTGTTTCTTCAATTCAGG+AGG + chr8_1:87294600-87294619 Msa1222890:intron 40.0%
TCAATTCAGGAGGTTAGGAA+AGG + chr8_1:87294670-87294689 Msa1222890:intron 40.0%
ATTATCTTCATCAAGCAGGG+AGG + chr8_1:87294794-87294813 Msa1222890:CDS 40.0%
ATCAGAAAAGGGTTTCCTAC+AGG - chr8_1:87294821-87294840 None:intergenic 40.0%
AATATGTGAAGGTCTAGGTG+AGG - chr8_1:87294947-87294966 None:intergenic 40.0%
AATGTTAGTGGAGTTGCAGG+AGG - chr8_1:87289767-87289786 None:intergenic 45.0%
! GAGTTGTTGTTGTTGTGACG+CGG - chr8_1:87289798-87289817 None:intergenic 45.0%
CACAACAACAACAACTCCAC+AGG + chr8_1:87289801-87289820 Msa1222890:CDS 45.0%
! AATGGTGGGAGAAGTAGGAT+TGG - chr8_1:87289833-87289852 None:intergenic 45.0%
ACTGTATCATCGTCTGCAGT+AGG - chr8_1:87289859-87289878 None:intergenic 45.0%
TTCCCGACCAATTACTCCAA+AGG + chr8_1:87289914-87289933 Msa1222890:CDS 45.0%
!! TGCCTTTGGAGTAATTGGTC+GGG - chr8_1:87289919-87289938 None:intergenic 45.0%
GGTTTCAGGATGGAAGAAGT+TGG + chr8_1:87290019-87290038 Msa1222890:intron 45.0%
TGGATATGTCATGCCTACAC+CGG + chr8_1:87290039-87290058 Msa1222890:CDS 45.0%
! GATGAGGCAAAGCTTGTTTC+TGG - chr8_1:87290066-87290085 None:intergenic 45.0%
TCACGACCGGAAAAAAGATG+AGG - chr8_1:87290082-87290101 None:intergenic 45.0%
ATGAAGTATGCAGTCACGAC+CGG - chr8_1:87290095-87290114 None:intergenic 45.0%
TGACTGCATACTTCATGCTC+AGG + chr8_1:87290099-87290118 Msa1222890:CDS 45.0%
! TCAGGAGTGTAAGGAAACTC+AGG - chr8_1:87290251-87290270 None:intergenic 45.0%
!! GAAGAACAACTTAGGTTGGG+AGG + chr8_1:87290287-87290306 Msa1222890:intron 45.0%
!! AGAACAACTTAGGTTGGGAG+GGG + chr8_1:87290289-87290308 Msa1222890:intron 45.0%
TAGACATGTTCCCAATACGG+CGG - chr8_1:87290428-87290447 None:intergenic 45.0%
AAGGAGAGTAGATCAGATGG+AGG + chr8_1:87290586-87290605 Msa1222890:CDS 45.0%
AGGAGAGTAGATCAGATGGA+GGG + chr8_1:87290587-87290606 Msa1222890:CDS 45.0%
GAGGGTAGTCAAATCACTAG+AGG + chr8_1:87290605-87290624 Msa1222890:CDS 45.0%
AGTCAAATCACTAGAGGCAG+AGG + chr8_1:87290611-87290630 Msa1222890:CDS 45.0%
CTTATCCCACTAATTGGGGT+CGG - chr8_1:87290735-87290754 None:intergenic 45.0%
! CCAAGCCTTATCCCACTAAT+TGG - chr8_1:87290741-87290760 None:intergenic 45.0%
CCAATTAGTGGGATAAGGCT+TGG + chr8_1:87290738-87290757 Msa1222890:intron 45.0%
ATTAGTGGGATAAGGCTTGG+TGG + chr8_1:87290741-87290760 Msa1222890:intron 45.0%
TACTTGCATGCCAAGTTCAC+GGG - chr8_1:87291073-87291092 None:intergenic 45.0%
ACAAGGTTACCAAGGTTGCT+AGG + chr8_1:87291208-87291227 Msa1222890:intron 45.0%
TACCAAGGTTGCTAGGATAC+TGG + chr8_1:87291215-87291234 Msa1222890:CDS 45.0%
CAAAGCCAACAGGAGTTGAA+GGG + chr8_1:87291241-87291260 Msa1222890:CDS 45.0%
AAAGCCAACAGGAGTTGAAG+GGG + chr8_1:87291242-87291261 Msa1222890:CDS 45.0%
! CATTGAGAAGGCACAAGAGT+TGG + chr8_1:87291307-87291326 Msa1222890:CDS 45.0%
! GCACAAGAGTTGGTTTAAGG+TGG + chr8_1:87291317-87291336 Msa1222890:intron 45.0%
TCCGTGCAATGCAATTGCAA+TGG + chr8_1:87291419-87291438 Msa1222890:intron 45.0%
TGTGGCTGCAAAATGTGGAA+TGG - chr8_1:87291554-87291573 None:intergenic 45.0%
TGAGATGTGGCTGCAAAATG+TGG - chr8_1:87291559-87291578 None:intergenic 45.0%
GGATGGGGGAATTACAGATT+AGG + chr8_1:87291839-87291858 Msa1222890:intron 45.0%
GTTGGACCTATGTTGGGAAA+TGG + chr8_1:87291909-87291928 Msa1222890:intron 45.0%
TTCCCTTATGCTGCTCATTC+AGG + chr8_1:87292041-87292060 Msa1222890:intron 45.0%
AGCCTGAATGAGCAGCATAA+GGG - chr8_1:87292046-87292065 None:intergenic 45.0%
AAGCCTGAATGAGCAGCATA+AGG - chr8_1:87292047-87292066 None:intergenic 45.0%
GTTGCAACTACTATTGCTGG+AGG - chr8_1:87292099-87292118 None:intergenic 45.0%
! TTTTTCGCTTGGAACCTTGC+GGG + chr8_1:87292155-87292174 Msa1222890:CDS 45.0%
CACATTTCCATGAGTCGGAA+GGG + chr8_1:87292488-87292507 Msa1222890:intron 45.0%
ACATTTCCATGAGTCGGAAG+GGG + chr8_1:87292489-87292508 Msa1222890:intron 45.0%
CAAAGCAAGTGAGTTCTCTC+CGG + chr8_1:87292685-87292704 Msa1222890:CDS 45.0%
CACTGGCAAAAACTGTCTGA+CGG - chr8_1:87292743-87292762 None:intergenic 45.0%
!! TGTGCAGCAGAAATGGACTA+AGG + chr8_1:87292800-87292819 Msa1222890:CDS 45.0%
GAATATGGATCACATCCCTC+TGG - chr8_1:87292922-87292941 None:intergenic 45.0%
TCTTTCCAAGGTCAAAGGGT+GGG - chr8_1:87293096-87293115 None:intergenic 45.0%
ATCTTTCCAAGGTCAAAGGG+TGG - chr8_1:87293097-87293116 None:intergenic 45.0%
TCATGTGACTGAAAGGTCAC+AGG + chr8_1:87293607-87293626 Msa1222890:intron 45.0%
GCGCATATCCATTAGATGCT+TGG + chr8_1:87293745-87293764 Msa1222890:intron 45.0%
ATGTCTGTTTGAATCAGCCC+AGG + chr8_1:87293889-87293908 Msa1222890:intron 45.0%
GCAGTCTGAGAAGTCGAAAA+AGG + chr8_1:87293958-87293977 Msa1222890:intron 45.0%
TCTGAGAAGTCGAAAAAGGC+TGG + chr8_1:87293962-87293981 Msa1222890:CDS 45.0%
AAAGTCAATCACAAGGGACG+TGG - chr8_1:87293999-87294018 None:intergenic 45.0%
ACCCGATTAACTGGGAACAT+CGG + chr8_1:87294323-87294342 Msa1222890:intron 45.0%
ACCGATGTTCCCAGTTAATC+GGG - chr8_1:87294327-87294346 None:intergenic 45.0%
TATTGTTTCCTTGGAGGAGG+GGG + chr8_1:87294381-87294400 Msa1222890:intron 45.0%
! CTTTGGCTTCAAATCACCCA+AGG + chr8_1:87294475-87294494 Msa1222890:intron 45.0%
GAGTAGCACTCATGAAACCT+TGG - chr8_1:87294495-87294514 None:intergenic 45.0%
ATACTTATGGTAGCCGCACT+AGG - chr8_1:87294553-87294572 None:intergenic 45.0%
ATTCAGGAGGTTAGGAAAGG+TGG + chr8_1:87294673-87294692 Msa1222890:intron 45.0%
GAAGGTCTAGGTGAGGTTTA+TGG - chr8_1:87294940-87294959 None:intergenic 45.0%
!! GAATAATAATAATAATAATA+AGG - chr8_1:87289962-87289981 None:intergenic 5.0%
!!! TAAAAAAAACAAATATTTTT+GGG - chr8_1:87290393-87290412 None:intergenic 5.0%
!!! ATAAAAAAAACAAATATTTT+TGG - chr8_1:87290394-87290413 None:intergenic 5.0%
! GCGGTGGTGGTTAATGTTAG+TGG - chr8_1:87289779-87289798 None:intergenic 50.0%
! TTGTTGTTGTTGTGACGCGG+TGG - chr8_1:87289795-87289814 None:intergenic 50.0%
! GGGAGAAGTAGGATTGGCAA+TGG - chr8_1:87289827-87289846 None:intergenic 50.0%
TCTGCAGTAGGAGGAATGGT+GGG - chr8_1:87289847-87289866 None:intergenic 50.0%
ATCGTCTGCAGTAGGAGGAA+TGG - chr8_1:87289851-87289870 None:intergenic 50.0%
GTATCATCGTCTGCAGTAGG+AGG - chr8_1:87289856-87289875 None:intergenic 50.0%
!! GGCAAAGCTTGTTTCTGGAC+CGG - chr8_1:87290061-87290080 None:intergenic 50.0%
! ATGGTGGAATCCGCCGTATT+GGG + chr8_1:87290415-87290434 Msa1222890:intron 50.0%
TTGAAGGTGGCTATCTGGCT+TGG + chr8_1:87290492-87290511 Msa1222890:CDS 50.0%
ACTAATTGGGGTCGGCTACA+TGG - chr8_1:87290727-87290746 None:intergenic 50.0%
ATGTAGCCGACCCCAATTAG+TGG + chr8_1:87290726-87290745 Msa1222890:intron 50.0%
TGTAGCCGACCCCAATTAGT+GGG + chr8_1:87290727-87290746 Msa1222890:intron 50.0%
CGACCCCAATTAGTGGGATA+AGG + chr8_1:87290733-87290752 Msa1222890:intron 50.0%
TAGAGCCCGAACAACATGGT+AGG - chr8_1:87290876-87290895 None:intergenic 50.0%
GAGATAGAGCCCGAACAACA+TGG - chr8_1:87290880-87290899 None:intergenic 50.0%
CATATCAAGGGGAACACCCT+TGG + chr8_1:87291147-87291166 Msa1222890:intron 50.0%
AAGGGGAACACCCTTGGAAA+AGG + chr8_1:87291153-87291172 Msa1222890:intron 50.0%
AGCCAGTATCCTAGCAACCT+TGG - chr8_1:87291220-87291239 None:intergenic 50.0%
! ATACTGGCTGCAAAGCCAAC+AGG + chr8_1:87291231-87291250 Msa1222890:CDS 50.0%
GCAAAGCCAACAGGAGTTGA+AGG + chr8_1:87291240-87291259 Msa1222890:CDS 50.0%
ATCAACAACCAACACCCGCA+AGG - chr8_1:87292172-87292191 None:intergenic 50.0%
CCTTCCGACTCATGGAAATG+TGG - chr8_1:87292490-87292509 None:intergenic 50.0%
CCACATTTCCATGAGTCGGA+AGG + chr8_1:87292487-87292506 Msa1222890:intron 50.0%
GAAAAACCCCTTCCGACTCA+TGG - chr8_1:87292498-87292517 None:intergenic 50.0%
GTGCTGTGGTATAGATGCAC+TGG - chr8_1:87292760-87292779 None:intergenic 50.0%
ACGAAGCTGTGCAGCAGAAA+TGG + chr8_1:87292793-87292812 Msa1222890:CDS 50.0%
CCACCGGACTAACGTGAATA+TGG - chr8_1:87292937-87292956 None:intergenic 50.0%
CCATATTCACGTTAGTCCGG+TGG + chr8_1:87292934-87292953 Msa1222890:CDS 50.0%
TGAGATAGACGAGACGGCAT+GGG - chr8_1:87292962-87292981 None:intergenic 50.0%
ATGAGATAGACGAGACGGCA+TGG - chr8_1:87292963-87292982 None:intergenic 50.0%
CTTTCCAAGGTCAAAGGGTG+GGG - chr8_1:87293095-87293114 None:intergenic 50.0%
!! GGGAGCATCGGATTGTATCA+AGG - chr8_1:87293244-87293263 None:intergenic 50.0%
! AATGCCAGACTTGGGAGCAT+CGG - chr8_1:87293256-87293275 None:intergenic 50.0%
AAGGTCACAGGTTCAAGTCC+TGG + chr8_1:87293619-87293638 Msa1222890:intron 50.0%
ACAAAGCTCCCGCATATGCA+GGG - chr8_1:87293715-87293734 None:intergenic 50.0%
! TCTAATGGATATGCGCAGCC+CGG - chr8_1:87293741-87293760 None:intergenic 50.0%
TCAATCACAAGGGACGTGGA+TGG - chr8_1:87293995-87294014 None:intergenic 50.0%
TCATGTCATCTTCGAGGAGG+AGG - chr8_1:87294054-87294073 None:intergenic 50.0%
TTCACGAGCAGCTTCTCTGT+TGG + chr8_1:87294081-87294100 Msa1222890:CDS 50.0%
GAGGAGGGGGAATCAAGAAT+GGG + chr8_1:87294394-87294413 Msa1222890:intron 50.0%
AGGAGGGGGAATCAAGAATG+GGG + chr8_1:87294395-87294414 Msa1222890:intron 50.0%
GGGGAATCAAGAATGGGGAA+CGG + chr8_1:87294400-87294419 Msa1222890:intron 50.0%
GCAACAGATGTAGCAGCTAG+AGG + chr8_1:87294712-87294731 Msa1222890:CDS 50.0%
CACCAGCATTATAGTCTCGC+AGG + chr8_1:87294855-87294874 Msa1222890:CDS 50.0%
CTCCTGCGAGACTATAATGC+TGG - chr8_1:87294860-87294879 None:intergenic 50.0%
GCATTATAGTCTCGCAGGAG+CGG + chr8_1:87294860-87294879 Msa1222890:CDS 50.0%
! TTGTTGTTGTGACGCGGTGG+TGG - chr8_1:87289792-87289811 None:intergenic 55.0%
! GTAGGATTGGCAATGGCCTG+TGG - chr8_1:87289820-87289839 None:intergenic 55.0%
! GGAGGAATGGTGGGAGAAGT+AGG - chr8_1:87289838-87289857 None:intergenic 55.0%
GTCTGCAGTAGGAGGAATGG+TGG - chr8_1:87289848-87289867 None:intergenic 55.0%
!! GCTTGTTTCTGGACCGGTGT+AGG - chr8_1:87290055-87290074 None:intergenic 55.0%
!! GATGGTGGAATCCGCCGTAT+TGG + chr8_1:87290414-87290433 Msa1222890:intron 55.0%
TGCATGCCAAGTTCACGGGT+GGG - chr8_1:87291069-87291088 None:intergenic 55.0%
TTGCATGCCAAGTTCACGGG+TGG - chr8_1:87291070-87291089 None:intergenic 55.0%
TGCTCCCCTTCAACTCCTGT+TGG - chr8_1:87291249-87291268 None:intergenic 55.0%
TCTCGCCGTTGGCCAAATTG+TGG + chr8_1:87291731-87291750 Msa1222890:intron 55.0%
!! GCGGGTGTTGGTTGTTGATG+AGG + chr8_1:87292173-87292192 Msa1222890:CDS 55.0%
CTTTCCCCACCCTTTGACCT+TGG + chr8_1:87293088-87293107 Msa1222890:intron 55.0%
CAATCCGATGCTCCCAAGTC+TGG + chr8_1:87293249-87293268 Msa1222890:CDS 55.0%
CATATGCAGGGTTCGGGAAG+GGG - chr8_1:87293703-87293722 None:intergenic 55.0%
GCATATGCAGGGTTCGGGAA+GGG - chr8_1:87293704-87293723 None:intergenic 55.0%
CTTCCCGAACCCTGCATATG+CGG + chr8_1:87293703-87293722 Msa1222890:intron 55.0%
TTCCCGAACCCTGCATATGC+GGG + chr8_1:87293704-87293723 Msa1222890:intron 55.0%
CACAAAGCTCCCGCATATGC+AGG - chr8_1:87293716-87293735 None:intergenic 55.0%
! TATGCGGGAGCTTTGTGCAC+CGG + chr8_1:87293719-87293738 Msa1222890:intron 55.0%
TCTTGATTCCCCCTCCTCCA+AGG - chr8_1:87294392-87294411 None:intergenic 55.0%
GGAGGAGGGGGAATCAAGAA+TGG + chr8_1:87294393-87294412 Msa1222890:intron 55.0%
CAGGAGGTTAGGAAAGGTGG+CGG + chr8_1:87294676-87294695 Msa1222890:intron 55.0%
ATCAAGCAGGGAGGACCTGT+AGG + chr8_1:87294803-87294822 Msa1222890:CDS 55.0%
! TTGGTGCCCACCCGTGAACT+TGG + chr8_1:87291060-87291079 Msa1222890:CDS 60.0%
GCTTGGAACCTTGCGGGTGT+TGG + chr8_1:87292161-87292180 Msa1222890:CDS 60.0%
CGCATATGCAGGGTTCGGGA+AGG - chr8_1:87293705-87293724 None:intergenic 60.0%
CTCCCGCATATGCAGGGTTC+GGG - chr8_1:87293709-87293728 None:intergenic 60.0%
GCTCCCGCATATGCAGGGTT+CGG - chr8_1:87293710-87293729 None:intergenic 60.0%
! ATGCGGGAGCTTTGTGCACC+GGG + chr8_1:87293720-87293739 Msa1222890:intron 60.0%
CGGGAAGGGGTCCTACCGTT+TGG - chr8_1:87293690-87293709 None:intergenic 65.0%
CGAGACGGCATGGGCTCCAC+CGG - chr8_1:87292953-87292972 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 87289573 87295142 87289573 ID=Msa1222890;Name=Msa1222890
chr8_1 mRNA 87289573 87295142 87289573 ID=Msa1222890-mRNA-1;Parent=Msa1222890;Name=Msa1222890-mRNA-1;_AED=0.17;_eAED=0.17;_QI=52|0.8|0.90|1|1|1|11|200|561
chr8_1 exon 87289573 87289935 87289573 ID=Msa1222890-mRNA-1:exon:31507;Parent=Msa1222890-mRNA-1
chr8_1 exon 87290027 87290120 87290027 ID=Msa1222890-mRNA-1:exon:31508;Parent=Msa1222890-mRNA-1
chr8_1 exon 87290476 87290691 87290476 ID=Msa1222890-mRNA-1:exon:31509;Parent=Msa1222890-mRNA-1
chr8_1 exon 87290976 87291089 87290976 ID=Msa1222890-mRNA-1:exon:31510;Parent=Msa1222890-mRNA-1
chr8_1 exon 87291213 87291335 87291213 ID=Msa1222890-mRNA-1:exon:31511;Parent=Msa1222890-mRNA-1
chr8_1 exon 87292090 87292194 87292090 ID=Msa1222890-mRNA-1:exon:31512;Parent=Msa1222890-mRNA-1
chr8_1 exon 87292663 87292821 87292663 ID=Msa1222890-mRNA-1:exon:31513;Parent=Msa1222890-mRNA-1
chr8_1 exon 87292923 87292991 87292923 ID=Msa1222890-mRNA-1:exon:31514;Parent=Msa1222890-mRNA-1
chr8_1 exon 87293204 87293293 87293204 ID=Msa1222890-mRNA-1:exon:31515;Parent=Msa1222890-mRNA-1
chr8_1 exon 87293962 87294102 87293962 ID=Msa1222890-mRNA-1:exon:31516;Parent=Msa1222890-mRNA-1
chr8_1 exon 87294679 87295142 87294679 ID=Msa1222890-mRNA-1:exon:31517;Parent=Msa1222890-mRNA-1
chr8_1 five_prime_UTR 87289573 87289624 87289573 ID=Msa1222890-mRNA-1:five_prime_utr;Parent=Msa1222890-mRNA-1
chr8_1 CDS 87289625 87289935 87289625 ID=Msa1222890-mRNA-1:cds;Parent=Msa1222890-mRNA-1
chr8_1 CDS 87290027 87290120 87290027 ID=Msa1222890-mRNA-1:cds;Parent=Msa1222890-mRNA-1
chr8_1 CDS 87290476 87290691 87290476 ID=Msa1222890-mRNA-1:cds;Parent=Msa1222890-mRNA-1
chr8_1 CDS 87290976 87291089 87290976 ID=Msa1222890-mRNA-1:cds;Parent=Msa1222890-mRNA-1
chr8_1 CDS 87291213 87291335 87291213 ID=Msa1222890-mRNA-1:cds;Parent=Msa1222890-mRNA-1
chr8_1 CDS 87292090 87292194 87292090 ID=Msa1222890-mRNA-1:cds;Parent=Msa1222890-mRNA-1
chr8_1 CDS 87292663 87292821 87292663 ID=Msa1222890-mRNA-1:cds;Parent=Msa1222890-mRNA-1
chr8_1 CDS 87292923 87292991 87292923 ID=Msa1222890-mRNA-1:cds;Parent=Msa1222890-mRNA-1
chr8_1 CDS 87293204 87293293 87293204 ID=Msa1222890-mRNA-1:cds;Parent=Msa1222890-mRNA-1
chr8_1 CDS 87293962 87294102 87293962 ID=Msa1222890-mRNA-1:cds;Parent=Msa1222890-mRNA-1
chr8_1 CDS 87294679 87294942 87294679 ID=Msa1222890-mRNA-1:cds;Parent=Msa1222890-mRNA-1
chr8_1 three_prime_UTR 87294943 87295142 87294943 ID=Msa1222890-mRNA-1:three_prime_utr;Parent=Msa1222890-mRNA-1
Gene Sequence

>Msa1222890

ATGGACAGTCGAACTCTATCAGTCTCACATCTTCTTCTTCCTCTTCGTTTTCTTTCTTCATCTCAAAACCCAACTTCTTCTTCTTCTTCTTCTTCTTCGTGTTCATACAATAACAACAACAATTTTGTGAAACTATTATCCTCCTGCAACTCCACTAACATTAACCACCACCGCGTCACAACAACAACAACTCCACAGGCCATTGCCAATCCTACTTCTCCCACCATTCCTCCTACTGCAGACGATGATACAGTCCCCACCACTCTCAGACAATTATGTCAATCACATGTTCCCGACCAATTACTCCAAAGGATGGAAGAAGTTGGATATGTCATGCCTACACCGGTCCAGAAACAAGCTTTGCCTCATCTTTTTTCCGGTCGTGACTGCATACTTCATGCTCAGCTCTGTCATTATGAAATTGAAGGTGGCTATCTGGCTTGGCCTGCACAAAACTACAATTCCACTGACTCGGATTTTATATGGTTGAAATCATTTTATGTGGATTTTGTAGTAAGGAGAGTAGATCAGATGGAGGGTAGTCAAATCACTAGAGGCAGAGGAAGACCTAGAAAAACTATTAGCAAAGATTTGGAAATTAATGAGTTGGCCCGAAATATGACAGGTTCTGGGAAGACACTTGCATACTTGCTTTTGATCTATTCCATTATTAACACAAGAAAATCTTCTTTTCAAGCACTAGTTTTGGTGCCCACCCGTGAACTTGGCATGCAAGTTACCAAGGTTGCTAGGATACTGGCTGCAAAGCCAACAGGAGTTGAAGGGGAGCAAAGATCATGTACCATCATGGCTTTGTTAGATGGAGGAACATTGAGAAGGCACAAGAGTTGGTTTAAGGCTGAGCCTCCAGCAATAGTAGTTGCAACAGTTGAGAGTTTGTGCCAAATGCTTGAAAGACAACTTTTTTCGCTTGGAACCTTGCGGGTGTTGGTTGTTGATGAGGTTGATTTCATTTTCAATTCTTCAAAGCAAGTGAGTTCTCTCCGGAAGATTTTGACCTCATATTCGTCTTGTAATAACCGTCAGACAGTTTTTGCCAGTGCATCTATACCACAGCACAATCGATTTCTTAACGAAGCTGTGCAGCAGAAATGGACTAAGAGGGATGTGATCCATATTCACGTTAGTCCGGTGGAGCCCATGCCGTCTCGTCTATCTCATAGATTTATAGTATGTGATATAAAAAGAAAACTACAAACCCTGTTATCCTTGATACAATCCGATGCTCCCAAGTCTGGCATTATATTTGTTAGTGAGCAGTCTGAGAAGTCGAAAAAGGCTGGTAATTCTCCATCCACGTCCCTTGTGATTGACTTTCTAAAAACATCATATCATGGTTCTTTAGATATCCTCCTCCTCGAAGATGACATGAATTTCAATTCACGAGCAGCTTCTCTGTTGGAGGTTAGGAAAGGTGGCGGCTATCTTCTAGTAGCAACAGATGTAGCAGCTAGAGGAGTTGACTTTCCAGAAATGACTCACATATACAACTTTGATCTGCCAAAAACTGCCATAGATTATCTTCATCAAGCAGGGAGGACCTGTAGGAAACCCTTTTCTGATGTGAATTGTACTGTCACCAGCATTATAGTCTCGCAGGAGCGGTTTGTTCTGCAGAGATATGAAAATGAGTTGAGGTTTGTCTGTACAGAGCTTATTCCATAA

Protein sequence

>Msa1222890

MDSRTLSVSHLLLPLRFLSSSQNPTSSSSSSSSCSYNNNNNFVKLLSSCNSTNINHHRVTTTTTPQAIANPTSPTIPPTADDDTVPTTLRQLCQSHVPDQLLQRMEEVGYVMPTPVQKQALPHLFSGRDCILHAQLCHYEIEGGYLAWPAQNYNSTDSDFIWLKSFYVDFVVRRVDQMEGSQITRGRGRPRKTISKDLEINELARNMTGSGKTLAYLLLIYSIINTRKSSFQALVLVPTRELGMQVTKVARILAAKPTGVEGEQRSCTIMALLDGGTLRRHKSWFKAEPPAIVVATVESLCQMLERQLFSLGTLRVLVVDEVDFIFNSSKQVSSLRKILTSYSSCNNRQTVFASASIPQHNRFLNEAVQQKWTKRDVIHIHVSPVEPMPSRLSHRFIVCDIKRKLQTLLSLIQSDAPKSGIIFVSEQSEKSKKAGNSPSTSLVIDFLKTSYHGSLDILLLEDDMNFNSRAASLLEVRKGGGYLLVATDVAARGVDFPEMTHIYNFDLPKTAIDYLHQAGRTCRKPFSDVNCTVTSIIVSQERFVLQRYENELRFVCTELIP*