AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0455620


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0455620 MtrunA17_Chr3g0102541 73.874 111 23 1 99 209 336 440 4.43e-51 175
Msa0455620 MtrunA17_Chr3g0102531 83.529 85 14 0 125 209 355 439 1.25e-47 166
Msa0455620 MtrunA17_Chr3g0102551 61.176 85 28 1 125 209 366 445 7.21e-25 101
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0455620 AT1G55850.1 54.118 85 28 1 125 209 364 437 2.48e-22 94.7

Find 40 sgRNAs with CRISPR-Local

Find 210 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGACAATCCTTTCCCCTTT+AGG 0.254863 3_3:-48622664 None:intergenic
TCTGGAGATCGTTCCCTCTT+TGG 0.278096 3_3:+48622539 Msa0455620:CDS
AGCAGCCAGTTCCAATATAA+AGG 0.309758 3_3:-48623444 None:intergenic
TTTGGTGGGCCCCTTTATAT+TGG 0.310755 3_3:+48623433 Msa0455620:CDS
CATCATGGGCATGAAGATTC+AGG 0.339349 3_3:+48622458 Msa0455620:CDS
ATATGCTATGGTGGAGGAAA+TGG 0.343332 3_3:+48622599 Msa0455620:CDS
GGGCCCCTTTATATTGGAAC+TGG 0.377261 3_3:+48623439 Msa0455620:CDS
TTGGAACTGGCTGCTTTCAT+AGG 0.379649 3_3:+48623452 Msa0455620:CDS
GTGATCAATGCAAGATTGAT+TGG 0.407326 3_3:+48623503 Msa0455620:CDS
GCAGCCAGTTCCAATATAAA+GGG 0.431216 3_3:-48623443 None:intergenic
TGTCAGATCAAGCCGCCATC+TGG 0.432517 3_3:+48622521 Msa0455620:CDS
TTTAGATTGTTTGATGTCGT+TGG 0.462787 3_3:+48620757 Msa0455620:CDS
TATGGCTTAGATGGATTTGG+TGG 0.462979 3_3:+48623418 Msa0455620:CDS
GTCGTTGGTTCCTTCGTGAA+AGG 0.486069 3_3:+48620772 Msa0455620:CDS
GCAAGCTTCAAAATTCATCA+TGG 0.506117 3_3:+48622443 Msa0455620:CDS
TCTCACTTGCTACGAGGAGA+TGG 0.511375 3_3:+48620682 Msa0455620:CDS
CCTACGAGGAAAACACATCA+TGG 0.524836 3_3:+48623617 Msa0455620:CDS
TTAAGATTCCTAAAGGGGAA+AGG 0.534079 3_3:+48622656 Msa0455620:CDS
AAACACATCATGGGGAAAAG+AGG 0.543820 3_3:+48623627 Msa0455620:CDS
ATGGCTTAGATGGATTTGGT+GGG 0.554390 3_3:+48623419 Msa0455620:CDS
CAAGCTTCAAAATTCATCAT+GGG 0.569460 3_3:+48622444 Msa0455620:CDS
AGACGAGTGGATATATGCTA+TGG 0.570627 3_3:+48622587 Msa0455620:CDS
TAACTATAATATGTCCAAAG+AGG 0.571548 3_3:-48622553 None:intergenic
CTACGAGGAAAACACATCAT+GGG 0.575625 3_3:+48623618 Msa0455620:CDS
AACTATAATATGTCCAAAGA+GGG 0.586943 3_3:-48622552 None:intergenic
CGAGTGGATATATGCTATGG+TGG 0.595667 3_3:+48622590 Msa0455620:CDS
GAGCTCTTTCACATGGAGGA+TGG 0.606471 3_3:-48620710 None:intergenic
GTGGATATATGCTATGGTGG+AGG 0.607581 3_3:+48622593 Msa0455620:CDS
ACAAAACGAGCTCTTTCACA+TGG 0.614326 3_3:-48620717 None:intergenic
CATAGGAGAGATGCACTATG+TGG 0.623522 3_3:+48623469 Msa0455620:CDS
AAGAGGGAACGATCTCCAGA+TGG 0.638079 3_3:-48622536 None:intergenic
TACTCATGAGAAAAGACGAG+TGG 0.639074 3_3:+48622574 Msa0455620:CDS
TACGAGGAAAACACATCATG+GGG 0.641361 3_3:+48623619 Msa0455620:CDS
GCGTTAGAAACCTTTCACGA+AGG 0.645777 3_3:-48620782 None:intergenic
CAGCCAGTTCCAATATAAAG+GGG 0.659311 3_3:-48623442 None:intergenic
CATGGGCATGAAGATTCAGG+TGG 0.659749 3_3:+48622461 Msa0455620:CDS
AGGGAACGATCTCCAGATGG+CGG 0.681933 3_3:-48622533 None:intergenic
AAACGAGCTCTTTCACATGG+AGG 0.731229 3_3:-48620714 None:intergenic
AGTGAATCTCACTTGCTACG+AGG 0.736095 3_3:+48620676 Msa0455620:CDS
TCTTGCAAGTTGTACCTACG+AGG 0.745784 3_3:+48623603 Msa0455620:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAATTTTTTTTGTTTGAT+AGG + chr3_3:48623310-48623329 Msa0455620:intron 10.0%
!! TTGAAGAAAGATAAAAAAAA+TGG + chr3_3:48622626-48622645 Msa0455620:CDS 15.0%
!! TGAAGAAAGATAAAAAAAAT+GGG + chr3_3:48622627-48622646 Msa0455620:CDS 15.0%
!!! TATTTTCTTAAGATTTTAAG+TGG - chr3_3:48622836-48622855 None:intergenic 15.0%
!! ACTTAAAATCTTAAGAAAAT+AGG + chr3_3:48622835-48622854 Msa0455620:intron 15.0%
!! AGAAATGTAAAAAATATAAG+AGG - chr3_3:48623154-48623173 None:intergenic 15.0%
!! AAACATAAGATATACATAAA+AGG - chr3_3:48623231-48623250 None:intergenic 15.0%
!! TTCAAAAGTTTATAAACTAT+TGG - chr3_3:48623377-48623396 None:intergenic 15.0%
!!! TTGTTACTTCAATCAATTTT+TGG + chr3_3:48620920-48620939 Msa0455620:intron 20.0%
!! ATAATTGATTAATTGCTCAT+AGG - chr3_3:48621380-48621399 None:intergenic 20.0%
!!! TCATTTTTGTTTTCCAAAAT+TGG - chr3_3:48622254-48622273 None:intergenic 20.0%
!!! AATTTTGGAAAACAAAAATG+AGG + chr3_3:48622253-48622272 Msa0455620:intron 20.0%
!!! AGTTTTTTAAGATTCCTAAA+GGG + chr3_3:48622650-48622669 Msa0455620:CDS 20.0%
!! TAATATTTAAAGGTCTTGAA+TGG - chr3_3:48623118-48623137 None:intergenic 20.0%
!! ATTCAAGACCTTTAAATATT+AGG + chr3_3:48623117-48623136 Msa0455620:intron 20.0%
!!! AACTTTTGAACATATATGTA+AGG + chr3_3:48623387-48623406 Msa0455620:intron 20.0%
! GAAGGTTCAATAATATTTGA+AGG - chr3_3:48620891-48620910 None:intergenic 25.0%
! ATTGAAGTAACAATGACAAA+AGG - chr3_3:48620913-48620932 None:intergenic 25.0%
! TACTAAAGAACACAATTGTT+AGG + chr3_3:48621399-48621418 Msa0455620:intron 25.0%
! TCTAAACTGATGTAAGATAA+AGG + chr3_3:48621460-48621479 Msa0455620:intron 25.0%
! TTCATTCAAGGAAATTGATT+GGG - chr3_3:48621696-48621715 None:intergenic 25.0%
!!! TAGATTTCTAGAGTGTAATT+AGG - chr3_3:48621731-48621750 None:intergenic 25.0%
!! AAAGTGATTCTAAGAAAAAG+TGG + chr3_3:48621764-48621783 Msa0455620:intron 25.0%
!! ATGCAAATGATTCAATGTTT+TGG + chr3_3:48621840-48621859 Msa0455620:intron 25.0%
!! TGCAAATGATTCAATGTTTT+GGG + chr3_3:48621841-48621860 Msa0455620:intron 25.0%
! ATGTGACTATGTATAGAAAA+GGG + chr3_3:48621874-48621893 Msa0455620:intron 25.0%
! AAATAGTTTGAATCGTATCA+TGG - chr3_3:48622117-48622136 None:intergenic 25.0%
!! AATGTGTAGAAAACCAATTT+TGG + chr3_3:48622238-48622257 Msa0455620:intron 25.0%
! TATTGTGATACAAGATATGT+AGG + chr3_3:48622278-48622297 Msa0455620:intron 25.0%
!!! TTTAGATGTTGTTTTGATTC+TGG - chr3_3:48622375-48622394 None:intergenic 25.0%
! AACTATAATATGTCCAAAGA+GGG - chr3_3:48622555-48622574 None:intergenic 25.0%
! TAACTATAATATGTCCAAAG+AGG - chr3_3:48622556-48622575 None:intergenic 25.0%
!!! GAGTTTTTTAAGATTCCTAA+AGG + chr3_3:48622649-48622668 Msa0455620:CDS 25.0%
!!! GTTTTTTAAGATTCCTAAAG+GGG + chr3_3:48622651-48622670 Msa0455620:CDS 25.0%
! ACTAGCTGAAGAAAAAAAAA+GGG + chr3_3:48622719-48622738 Msa0455620:intron 25.0%
!! TCATTAGCTTAATCCATATT+AGG + chr3_3:48622970-48622989 Msa0455620:intron 25.0%
! CTCATACACCTAATATTTAA+AGG - chr3_3:48623128-48623147 None:intergenic 25.0%
!! TTTTGAACATATATGTAAGG+TGG + chr3_3:48623390-48623409 Msa0455620:intron 25.0%
!! ATATGTAAGGTGGAATTTTA+TGG + chr3_3:48623400-48623419 Msa0455620:intron 25.0%
TTTAGATTGTTTGATGTCGT+TGG + chr3_3:48620757-48620776 Msa0455620:CDS 30.0%
AAGTAACAATGACAAAAGGA+AGG - chr3_3:48620909-48620928 None:intergenic 30.0%
!!! ATTTTTTACGGTGAAACTAC+GGG - chr3_3:48621023-48621042 None:intergenic 30.0%
!!! GATTTTTTACGGTGAAACTA+CGG - chr3_3:48621024-48621043 None:intergenic 30.0%
GTAGTTTCACCGTAAAAAAT+CGG + chr3_3:48621023-48621042 Msa0455620:intron 30.0%
AAGAGTTAATATGGCAAGTA+AGG - chr3_3:48621075-48621094 None:intergenic 30.0%
AATCACCAGAAGAGTTAATA+TGG - chr3_3:48621084-48621103 None:intergenic 30.0%
TGATTAATTGCTCATAGGTT+TGG - chr3_3:48621375-48621394 None:intergenic 30.0%
!! TTTACTTCACTTTAGAACCT+TGG + chr3_3:48621666-48621685 Msa0455620:intron 30.0%
GTTCATTCAAGGAAATTGAT+TGG - chr3_3:48621697-48621716 None:intergenic 30.0%
!! ATTGTAAGTTGGTTCATTCA+AGG - chr3_3:48621708-48621727 None:intergenic 30.0%
GTGTAATTAGGATTGTAAGT+TGG - chr3_3:48621719-48621738 None:intergenic 30.0%
CATTGTTCATACATTCTTCA+AGG - chr3_3:48621794-48621813 None:intergenic 30.0%
TGAAGAATGTATGAACAATG+AGG + chr3_3:48621794-48621813 Msa0455620:intron 30.0%
AATGTATGAACAATGAGGTT+TGG + chr3_3:48621799-48621818 Msa0455620:intron 30.0%
GATGTGACTATGTATAGAAA+AGG + chr3_3:48621873-48621892 Msa0455620:intron 30.0%
!!! TCGATTCACTATGTTGTTTT+TGG - chr3_3:48621920-48621939 None:intergenic 30.0%
ATCGTTTCAATCTTCATCAT+GGG - chr3_3:48622053-48622072 None:intergenic 30.0%
AATCGTTTCAATCTTCATCA+TGG - chr3_3:48622054-48622073 None:intergenic 30.0%
!! TAATGAGACATAGTTTTGCT+AGG + chr3_3:48622322-48622341 Msa0455620:intron 30.0%
CATACTCAAAACATAACCAA+AGG + chr3_3:48622416-48622435 Msa0455620:intron 30.0%
CAAGCTTCAAAATTCATCAT+GGG + chr3_3:48622444-48622463 Msa0455620:CDS 30.0%
AAGGATTGTCAATTGTAAGT+TGG + chr3_3:48622675-48622694 Msa0455620:intron 30.0%
!!! TTTTTTTCTTCAGCTAGTGT+TGG - chr3_3:48622717-48622736 None:intergenic 30.0%
CACTAGCTGAAGAAAAAAAA+AGG + chr3_3:48622718-48622737 Msa0455620:intron 30.0%
CTAGCTGAAGAAAAAAAAAG+GGG + chr3_3:48622720-48622739 Msa0455620:intron 30.0%
TAGCTGAAGAAAAAAAAAGG+GGG + chr3_3:48622721-48622740 Msa0455620:intron 30.0%
ATGATGTCAAAGTCTCTTAA+AGG - chr3_3:48622809-48622828 None:intergenic 30.0%
TTTAAGAGACTTTGACATCA+TGG + chr3_3:48622808-48622827 Msa0455620:intron 30.0%
! ATGGATTAAGCTAATGATGT+GGG - chr3_3:48622967-48622986 None:intergenic 30.0%
! TATGGATTAAGCTAATGATG+TGG - chr3_3:48622968-48622987 None:intergenic 30.0%
AGATAGAATTCATGTGTTAG+TGG - chr3_3:48623203-48623222 None:intergenic 30.0%
TGGTGTAAGTAAGATACTAA+TGG - chr3_3:48623357-48623376 None:intergenic 30.0%
!! TTTTATGGCTTAGATGGATT+TGG + chr3_3:48623415-48623434 Msa0455620:CDS 30.0%
TAAAACCGTTAAGGCTATGT+AGG - chr3_3:48620810-48620829 None:intergenic 35.0%
CTCTCATTGTAAAACCGTTA+AGG - chr3_3:48620819-48620838 None:intergenic 35.0%
! AACGGTTTTACAATGAGAGA+AGG + chr3_3:48620820-48620839 Msa0455620:intron 35.0%
ACATACTCATATCCTCTCTT+GGG - chr3_3:48620862-48620881 None:intergenic 35.0%
AACATACTCATATCCTCTCT+TGG - chr3_3:48620863-48620882 None:intergenic 35.0%
! AACACCGTCAACAAAGTTTT+GGG + chr3_3:48620955-48620974 Msa0455620:intron 35.0%
!!! AATAGGGCACCGATTTTTTA+CGG - chr3_3:48621035-48621054 None:intergenic 35.0%
ACTTGCCATATTAACTCTTC+TGG + chr3_3:48621076-48621095 Msa0455620:intron 35.0%
TAATTGTTAGCAAAGAGACC+AGG + chr3_3:48621103-48621122 Msa0455620:intron 35.0%
CACACAAGATAAGATTCACT+TGG + chr3_3:48621259-48621278 Msa0455620:intron 35.0%
!!! ACCAAAGGGTTTTGAAGATT+GGG - chr3_3:48621517-48621536 None:intergenic 35.0%
CTAAAGTTCTTGTGTTCAAG+AGG - chr3_3:48621608-48621627 None:intergenic 35.0%
TAATTTCATTCCACCTCCAA+AGG - chr3_3:48621646-48621665 None:intergenic 35.0%
GAAATTGATTGGGTAAACCA+AGG - chr3_3:48621686-48621705 None:intergenic 35.0%
!! TCAATGTTTTGGGTGTTATG+AGG + chr3_3:48621851-48621870 Msa0455620:intron 35.0%
TGACTATGTATAGAAAAGGG+TGG + chr3_3:48621877-48621896 Msa0455620:intron 35.0%
GATTTAGACAGCAAAATGAC+AGG + chr3_3:48621959-48621978 Msa0455620:intron 35.0%
GCAAGCTTCAAAATTCATCA+TGG + chr3_3:48622443-48622462 Msa0455620:CDS 35.0%
TTAAGATTCCTAAAGGGGAA+AGG + chr3_3:48622656-48622675 Msa0455620:CDS 35.0%
!! CGAAAATGGACTAAACTTCT+AGG + chr3_3:48622782-48622801 Msa0455620:intron 35.0%
TTCTCTATTCCTATTCGATG+TGG + chr3_3:48622890-48622909 Msa0455620:intron 35.0%
TCTCTATTCCTATTCGATGT+GGG + chr3_3:48622891-48622910 Msa0455620:intron 35.0%
TGTTGGAATTCAAGAGTAAG+TGG - chr3_3:48622922-48622941 None:intergenic 35.0%
ATCAGAACCATGATTCATCT+CGG - chr3_3:48623010-48623029 None:intergenic 35.0%
CAGCAATAGGTTAAACATCT+AGG + chr3_3:48623065-48623084 Msa0455620:intron 35.0%
! GTGGAATTTTATGGCTTAGA+TGG + chr3_3:48623409-48623428 Msa0455620:CDS 35.0%
GTGATCAATGCAAGATTGAT+TGG + chr3_3:48623503-48623522 Msa0455620:CDS 35.0%
ACAAAACGAGCTCTTTCACA+TGG - chr3_3:48620720-48620739 None:intergenic 40.0%
ATACTCATTAACCCCAAGAG+AGG + chr3_3:48620847-48620866 Msa0455620:intron 40.0%
CATACTCATATCCTCTCTTG+GGG - chr3_3:48620861-48620880 None:intergenic 40.0%
! CAACACCGTCAACAAAGTTT+TGG + chr3_3:48620954-48620973 Msa0455620:intron 40.0%
! ACACCGTCAACAAAGTTTTG+GGG + chr3_3:48620956-48620975 Msa0455620:intron 40.0%
CAACCCCAAAACTTTGTTGA+CGG - chr3_3:48620962-48620981 None:intergenic 40.0%
AGAATGTCGTTACCAACAAG+AGG - chr3_3:48620988-48621007 None:intergenic 40.0%
! ATACCACTTGCTGCTTGATA+TGG + chr3_3:48621131-48621150 Msa0455620:intron 40.0%
!!! CCAAAGGGTTTTGAAGATTG+GGG - chr3_3:48621516-48621535 None:intergenic 40.0%
!!! CACCAAAGGGTTTTGAAGAT+TGG - chr3_3:48621518-48621537 None:intergenic 40.0%
AGACATCAGTAAGCACCAAA+GGG - chr3_3:48621531-48621550 None:intergenic 40.0%
AAGACATCAGTAAGCACCAA+AGG - chr3_3:48621532-48621551 None:intergenic 40.0%
ATCACCAAAAGTCTCTGACT+TGG - chr3_3:48622190-48622209 None:intergenic 40.0%
! TTTGAAGCTTGCATAGCCTT+TGG - chr3_3:48622435-48622454 None:intergenic 40.0%
TACTCATGAGAAAAGACGAG+TGG + chr3_3:48622574-48622593 Msa0455620:CDS 40.0%
AGACGAGTGGATATATGCTA+TGG + chr3_3:48622587-48622606 Msa0455620:CDS 40.0%
! ATATGCTATGGTGGAGGAAA+TGG + chr3_3:48622599-48622618 Msa0455620:CDS 40.0%
TTGACAATCCTTTCCCCTTT+AGG - chr3_3:48622667-48622686 None:intergenic 40.0%
AGGGGGAAAATTCACTTGTT+CGG + chr3_3:48622738-48622757 Msa0455620:intron 40.0%
CTCTATTCCTATTCGATGTG+GGG + chr3_3:48622892-48622911 Msa0455620:intron 40.0%
! GGTTCTGATACCACTTGTTT+AGG + chr3_3:48623021-48623040 Msa0455620:intron 40.0%
! TGTGGTGTCAAGTCTCTTAA+GGG - chr3_3:48623092-48623111 None:intergenic 40.0%
! ATGTGGTGTCAAGTCTCTTA+AGG - chr3_3:48623093-48623112 None:intergenic 40.0%
AAAGGTCTTGAATGGAGATG+TGG - chr3_3:48623110-48623129 None:intergenic 40.0%
! TATGGCTTAGATGGATTTGG+TGG + chr3_3:48623418-48623437 Msa0455620:CDS 40.0%
! ATGGCTTAGATGGATTTGGT+GGG + chr3_3:48623419-48623438 Msa0455620:CDS 40.0%
CAGCCAGTTCCAATATAAAG+GGG - chr3_3:48623445-48623464 None:intergenic 40.0%
GCAGCCAGTTCCAATATAAA+GGG - chr3_3:48623446-48623465 None:intergenic 40.0%
AGCAGCCAGTTCCAATATAA+AGG - chr3_3:48623447-48623466 None:intergenic 40.0%
CTACGAGGAAAACACATCAT+GGG + chr3_3:48623618-48623637 Msa0455620:CDS 40.0%
TACGAGGAAAACACATCATG+GGG + chr3_3:48623619-48623638 Msa0455620:CDS 40.0%
AAACACATCATGGGGAAAAG+AGG + chr3_3:48623627-48623646 Msa0455620:CDS 40.0%
! AGTGAATCTCACTTGCTACG+AGG + chr3_3:48620676-48620695 Msa0455620:CDS 45.0%
AAACGAGCTCTTTCACATGG+AGG - chr3_3:48620717-48620736 None:intergenic 45.0%
GCGTTAGAAACCTTTCACGA+AGG - chr3_3:48620785-48620804 None:intergenic 45.0%
! CGCATCCTACATAGCCTTAA+CGG + chr3_3:48620802-48620821 Msa0455620:intron 45.0%
TTGGGGTTGAAACCTCTTGT+TGG + chr3_3:48620973-48620992 Msa0455620:intron 45.0%
GCCAAAGGGGACACATAATA+GGG - chr3_3:48621051-48621070 None:intergenic 45.0%
AGCCAAAGGGGACACATAAT+AGG - chr3_3:48621052-48621071 None:intergenic 45.0%
ATGGCAAGTAAGGAGCCAAA+GGG - chr3_3:48621065-48621084 None:intergenic 45.0%
TATGGCAAGTAAGGAGCCAA+AGG - chr3_3:48621066-48621085 None:intergenic 45.0%
TTGCCATATCAAGCAGCAAG+TGG - chr3_3:48621137-48621156 None:intergenic 45.0%
! ACTTGCTGCTTGATATGGCA+AGG + chr3_3:48621136-48621155 Msa0455620:intron 45.0%
GCAAGGTAATATGCGCTAGA+GGG + chr3_3:48621153-48621172 Msa0455620:intron 45.0%
CAAGGTAATATGCGCTAGAG+GGG + chr3_3:48621154-48621173 Msa0455620:intron 45.0%
AAGGTAATATGCGCTAGAGG+GGG + chr3_3:48621155-48621174 Msa0455620:intron 45.0%
CCCCAATCTTCAAAACCCTT+TGG + chr3_3:48621513-48621532 Msa0455620:intron 45.0%
GAACAATTCAAGGGTTGCAC+GGG - chr3_3:48621569-48621588 None:intergenic 45.0%
GGAACAATTCAAGGGTTGCA+CGG - chr3_3:48621570-48621589 None:intergenic 45.0%
TGCTGGACGGAACAATTCAA+GGG - chr3_3:48621578-48621597 None:intergenic 45.0%
TTGCTGGACGGAACAATTCA+AGG - chr3_3:48621579-48621598 None:intergenic 45.0%
GAATTGTTCCGTCCAGCAAT+TGG + chr3_3:48621580-48621599 Msa0455620:intron 45.0%
AAGAGGATCCAATTGCTGGA+CGG - chr3_3:48621591-48621610 None:intergenic 45.0%
GTTCAAGAGGATCCAATTGC+TGG - chr3_3:48621595-48621614 None:intergenic 45.0%
ATTCCACCTCCAAAGGTCTT+GGG - chr3_3:48621639-48621658 None:intergenic 45.0%
! GGGTGGCAAGTGCAAATTTT+AGG + chr3_3:48621894-48621913 Msa0455620:intron 45.0%
! CACTCCAAGTCAGAGACTTT+TGG + chr3_3:48622183-48622202 Msa0455620:intron 45.0%
CATCATGGGCATGAAGATTC+AGG + chr3_3:48622458-48622477 Msa0455620:CDS 45.0%
CGAGTGGATATATGCTATGG+TGG + chr3_3:48622590-48622609 Msa0455620:CDS 45.0%
GTGGATATATGCTATGGTGG+AGG + chr3_3:48622593-48622612 Msa0455620:CDS 45.0%
GGGGGAAAATTCACTTGTTC+GGG + chr3_3:48622739-48622758 Msa0455620:intron 45.0%
AATTCACTTGTTCGGGAGAC+CGG + chr3_3:48622746-48622765 Msa0455620:intron 45.0%
CACACATGAGGGGAAATTGT+TGG - chr3_3:48622939-48622958 None:intergenic 45.0%
AACCATGATTCATCTCGGTG+GGG - chr3_3:48623005-48623024 None:intergenic 45.0%
GAACCATGATTCATCTCGGT+GGG - chr3_3:48623006-48623025 None:intergenic 45.0%
AGAACCATGATTCATCTCGG+TGG - chr3_3:48623007-48623026 None:intergenic 45.0%
CCTCTGGTATCCTAAACAAG+TGG - chr3_3:48623034-48623053 None:intergenic 45.0%
! CCACTTGTTTAGGATACCAG+AGG + chr3_3:48623031-48623050 Msa0455620:intron 45.0%
GGAATGTTGAGAGCAGCAAT+AGG + chr3_3:48623052-48623071 Msa0455620:intron 45.0%
! TTTGGTGGGCCCCTTTATAT+TGG + chr3_3:48623433-48623452 Msa0455620:CDS 45.0%
! TTGGAACTGGCTGCTTTCAT+AGG + chr3_3:48623452-48623471 Msa0455620:CDS 45.0%
CATAGGAGAGATGCACTATG+TGG + chr3_3:48623469-48623488 Msa0455620:CDS 45.0%
TCTTGCAAGTTGTACCTACG+AGG + chr3_3:48623603-48623622 Msa0455620:CDS 45.0%
! CCATGATGTGTTTTCCTCGT+AGG - chr3_3:48623620-48623639 None:intergenic 45.0%
CCTACGAGGAAAACACATCA+TGG + chr3_3:48623617-48623636 Msa0455620:CDS 45.0%
! TCTCACTTGCTACGAGGAGA+TGG + chr3_3:48620682-48620701 Msa0455620:CDS 50.0%
GAGCTCTTTCACATGGAGGA+TGG - chr3_3:48620713-48620732 None:intergenic 50.0%
!! GTCGTTGGTTCCTTCGTGAA+AGG + chr3_3:48620772-48620791 Msa0455620:CDS 50.0%
GCCCTATTATGTGTCCCCTT+TGG + chr3_3:48621047-48621066 Msa0455620:intron 50.0%
TGGCAAGTAAGGAGCCAAAG+GGG - chr3_3:48621064-48621083 None:intergenic 50.0%
GGCAAGGTAATATGCGCTAG+AGG + chr3_3:48621152-48621171 Msa0455620:intron 50.0%
AAGGGTTGCACGGGTAATTG+AGG - chr3_3:48621560-48621579 None:intergenic 50.0%
GAAAGAACCCCCAAGACCTT+TGG + chr3_3:48621627-48621646 Msa0455620:intron 50.0%
TTCCACCTCCAAAGGTCTTG+GGG - chr3_3:48621638-48621657 None:intergenic 50.0%
CATTCCACCTCCAAAGGTCT+TGG - chr3_3:48621640-48621659 None:intergenic 50.0%
CATGGGCATGAAGATTCAGG+TGG + chr3_3:48622461-48622480 Msa0455620:CDS 50.0%
AAGAGGGAACGATCTCCAGA+TGG - chr3_3:48622539-48622558 None:intergenic 50.0%
TCTGGAGATCGTTCCCTCTT+TGG + chr3_3:48622539-48622558 Msa0455620:CDS 50.0%
ATTCACTTGTTCGGGAGACC+GGG + chr3_3:48622747-48622766 Msa0455620:intron 50.0%
! TGGTTAGCCCCACATCGAAT+AGG - chr3_3:48622902-48622921 None:intergenic 50.0%
TGTGGGTGACTCACACATGA+GGG - chr3_3:48622950-48622969 None:intergenic 50.0%
ATGTGGGTGACTCACACATG+AGG - chr3_3:48622951-48622970 None:intergenic 50.0%
GGGGGAGCTTGATCCTAATA+TGG - chr3_3:48622986-48623005 None:intergenic 50.0%
ACCATGATTCATCTCGGTGG+GGG - chr3_3:48623004-48623023 None:intergenic 50.0%
TGCTGCTCTCAACATTCCTC+TGG - chr3_3:48623050-48623069 None:intergenic 50.0%
GGGCCCCTTTATATTGGAAC+TGG + chr3_3:48623439-48623458 Msa0455620:CDS 50.0%
TACGGTGAAACTACGGGACG+TGG - chr3_3:48621017-48621036 None:intergenic 55.0%
CAGCAAGTGGTATCAGAGCC+TGG - chr3_3:48621124-48621143 None:intergenic 55.0%
AGAACCCCCAAGACCTTTGG+AGG + chr3_3:48621630-48621649 Msa0455620:intron 55.0%
TCCACCTCCAAAGGTCTTGG+GGG - chr3_3:48621637-48621656 None:intergenic 55.0%
TGTCAGATCAAGCCGCCATC+TGG + chr3_3:48622521-48622540 Msa0455620:CDS 55.0%
AGGGAACGATCTCCAGATGG+CGG - chr3_3:48622536-48622555 None:intergenic 55.0%
TTCACTTGTTCGGGAGACCG+GGG + chr3_3:48622748-48622767 Msa0455620:intron 55.0%
! TTTTCGTTCCCGAAGCTCCC+CGG - chr3_3:48622768-48622787 None:intergenic 55.0%
GGGAGCTTCGGGAACGAAAA+TGG + chr3_3:48622768-48622787 Msa0455620:intron 55.0%
GTGGGTGACTCACACATGAG+GGG - chr3_3:48622949-48622968 None:intergenic 55.0%
TCCCCCACCGAGATGAATCA+TGG + chr3_3:48623000-48623019 Msa0455620:intron 55.0%
! ACCCCCAAGACCTTTGGAGG+TGG + chr3_3:48621633-48621652 Msa0455620:intron 60.0%
TTCGGGAGACCGGGGAGCTT+CGG + chr3_3:48622756-48622775 Msa0455620:intron 65.0%
TCGGGAGACCGGGGAGCTTC+GGG + chr3_3:48622757-48622776 Msa0455620:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 48620673 48623672 48620673 ID=Msa0455620;Name=Msa0455620
chr3_3 mRNA 48620673 48623672 48620673 ID=Msa0455620-mRNA-1;Parent=Msa0455620;Name=Msa0455620-mRNA-1;_AED=0.78;_eAED=0.78;_QI=0|0|0|0.33|1|1|3|0|211
chr3_3 exon 48620673 48620793 48620673 ID=Msa0455620-mRNA-1:exon:9085;Parent=Msa0455620-mRNA-1
chr3_3 exon 48622438 48622688 48622438 ID=Msa0455620-mRNA-1:exon:9086;Parent=Msa0455620-mRNA-1
chr3_3 exon 48623409 48623672 48623409 ID=Msa0455620-mRNA-1:exon:9087;Parent=Msa0455620-mRNA-1
chr3_3 CDS 48620673 48620793 48620673 ID=Msa0455620-mRNA-1:cds;Parent=Msa0455620-mRNA-1
chr3_3 CDS 48622438 48622688 48622438 ID=Msa0455620-mRNA-1:cds;Parent=Msa0455620-mRNA-1
chr3_3 CDS 48623409 48623672 48623409 ID=Msa0455620-mRNA-1:cds;Parent=Msa0455620-mRNA-1
Gene Sequence

>Msa0455620

ATGAGTGAATCTCACTTGCTACGAGGAGATGGATTCACCATCCTCCATGTGAAAGAGCTCGTTTTGTTGAATGAGCGTATGAATTTTAGATTGTTTGATGTCGTTGGTTCCTTCGTGAAAGGCTATGCAAGCTTCAAAATTCATCATGGGCATGAAGATTCAGGTGGAGTACATGATTATTCTCTTTTACGTGACAAAGAGTGTTGTCAGATCAAGCCGCCATCTGGAGATCGTTCCCTCTTTGGACATATTATAGTTACTCATGAGAAAAGACGAGTGGATATATGCTATGGTGGAGGAAATGGAGTCTTGAAGAAAGATAAAAAAAATGGGAGTTTTTTAAGATTCCTAAAGGGGAAAGGATTGTCAATTGTGGAATTTTATGGCTTAGATGGATTTGGTGGGCCCCTTTATATTGGAACTGGCTGCTTTCATAGGAGAGATGCACTATGTGGAAGAAAGTATAGTGATCAATGCAAGATTGATTGGAAGAATGAAAATGATGAAAATATTGAACATATGATAAAAGAAGCAAGCTTGCATGAGCTAGAAGAAAAATCAAAGACTCTTGCAAGTTGTACCTACGAGGAAAACACATCATGGGGAAAAGAGGTCACACTCACCTTTAAAAAATAA

Protein sequence

>Msa0455620

MSESHLLRGDGFTILHVKELVLLNERMNFRLFDVVGSFVKGYASFKIHHGHEDSGGVHDYSLLRDKECCQIKPPSGDRSLFGHIIVTHEKRRVDICYGGGNGVLKKDKKNGSFLRFLKGKGLSIVEFYGLDGFGGPLYIGTGCFHRRDALCGRKYSDQCKIDWKNENDENIEHMIKEASLHELEEKSKTLASCTYEENTSWGKEVTLTFKK*