AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1078630


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1078630 MtrunA17_Chr7g0263571 98.621 145 2 0 1 145 1 145 2.03e-103 291
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1078630 AT3G53470.2 68.750 96 30 0 48 143 40 135 1.17e-43 140
Msa1078630 AT3G53470.1 71.111 90 26 0 54 143 45 134 5.50e-42 136

Find 51 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCAGCTCACATATTTATT+TGG 0.178393 7_2:+77612571 None:intergenic
AGTAATTTAACTATAGAATT+TGG 0.204600 7_2:-77612387 Msa1078630:exon
CGTTCTTCCTTCGGCTCAAC+TGG 0.259066 7_2:+77613748 None:intergenic
GATCTTTCTGTTCTCTTGAT+AGG 0.273479 7_2:+77612508 None:intergenic
ATGCATATTATTGTAATTGA+TGG 0.281843 7_2:-77612336 Msa1078630:three_prime_UTR
TACAAATTTGAAGGGGAAAT+AGG 0.290190 7_2:+77613602 None:intergenic
AAGAAGAGGATGATAAAGTT+TGG 0.290458 7_2:+77613631 None:intergenic
TTGAGATTGATCGTCCCTTT+TGG 0.300645 7_2:+77613572 None:intergenic
AAAGATCAAACCTCAAATTC+TGG 0.301138 7_2:-77612492 Msa1078630:CDS
CTTCTTCATTAGCATTGAAA+TGG 0.351444 7_2:-77613715 Msa1078630:exon
TTGCAATTTCGTTCTTCCTT+CGG 0.373637 7_2:+77613739 None:intergenic
TAGTTAAATTACTTGTTGAT+TGG 0.406008 7_2:+77612397 None:intergenic
AGAAGAGGATGATAAAGTTT+GGG 0.426783 7_2:+77613632 None:intergenic
AATAGAACAGGAATAGAAAC+AGG 0.428545 7_2:+77612308 None:intergenic
TGATAAATCATCAACGGATT+GGG 0.428760 7_2:-77612653 Msa1078630:CDS
GGAACATACTACAAATTTGA+AGG 0.434060 7_2:+77613593 None:intergenic
TCTGAGATTCGCAAAGGATA+AGG 0.456294 7_2:-77613779 Msa1078630:five_prime_UTR
CTTGACACAATTTATGTCCT+CGG 0.459402 7_2:-77612267 Msa1078630:three_prime_UTR
AATTTGTAGTATGTTCCAAA+AGG 0.463127 7_2:-77613587 Msa1078630:CDS
GTGATAAATCATCAACGGAT+TGG 0.467245 7_2:-77612654 Msa1078630:CDS
TAGGACTAGTCCAGAATTTG+AGG 0.468478 7_2:+77612482 None:intergenic
ACTTGTTGATTGGTGCTTGA+AGG 0.468811 7_2:+77612407 None:intergenic
CTCCAAATAAATATGTGAGC+TGG 0.474358 7_2:-77612573 Msa1078630:CDS
ATGGTCAAACTTCAAGAAGC+AGG 0.484213 7_2:-77612623 Msa1078630:CDS
CGATGGGATATAAAAGTTGT+GGG 0.484995 7_2:+77613669 None:intergenic
CTTGTTGATTGGTGCTTGAA+GGG 0.491316 7_2:+77612408 None:intergenic
AATATGTGAGCTGGAATCCT+AGG 0.492726 7_2:-77612564 Msa1078630:CDS
GAACATACTACAAATTTGAA+GGG 0.501237 7_2:+77613594 None:intergenic
GGATCAACTTCTTCAGAAAG+TGG 0.503418 7_2:+77612529 None:intergenic
AGTGGAAGAAGCAATAGAAC+AGG 0.515941 7_2:+77612296 None:intergenic
AGAAGCTCCAGTTGAGCCGA+AGG 0.516045 7_2:-77613755 Msa1078630:five_prime_UTR
GAGGATGATAAAGTTTGGGT+TGG 0.520750 7_2:+77613636 None:intergenic
ATTTGTAGTATGTTCCAAAA+GGG 0.522502 7_2:-77613586 Msa1078630:CDS
GCAAAAGTTGCACTTTGGAA+TGG 0.524395 7_2:+77612163 None:intergenic
ACGATGGGATATAAAAGTTG+TGG 0.530720 7_2:+77613668 None:intergenic
ATTTGAAGGGGAAATAGGAA+TGG 0.544166 7_2:+77613607 None:intergenic
CAACGGATTGGGACAAGGCA+TGG 0.546580 7_2:-77612642 Msa1078630:CDS
GAAATAGGAATGGAAAGAAG+AGG 0.566566 7_2:+77613617 None:intergenic
GGGTTGGTGAAGAGAAACGA+TGG 0.569268 7_2:+77613652 None:intergenic
GGTTGGTGAAGAGAAACGAT+GGG 0.586305 7_2:+77613653 None:intergenic
CAAAGAAACGCCGATAACAA+TGG 0.593112 7_2:-77613552 Msa1078630:intron
ATCATCAACGGATTGGGACA+AGG 0.594053 7_2:-77612647 Msa1078630:CDS
AGTGGAAAATCTGAACGCCT+AGG 0.596558 7_2:+77612547 None:intergenic
CTCAGGTGATAAATCATCAA+CGG 0.602810 7_2:-77612659 Msa1078630:intron
CGAGGACATAAATTGTGTCA+AGG 0.609330 7_2:+77612268 None:intergenic
AACATACTACAAATTTGAAG+GGG 0.613458 7_2:+77613595 None:intergenic
TGGTCAAACTTCAAGAAGCA+GGG 0.615004 7_2:-77612622 Msa1078630:CDS
GTAAAATCTGAGATTCGCAA+AGG 0.620857 7_2:-77613785 Msa1078630:five_prime_UTR
AATTGTGTCAAGGACTCGAG+TGG 0.625018 7_2:+77612278 None:intergenic
AAAAGAGAATAACAAATCCG+AGG 0.655714 7_2:+77612250 None:intergenic
GCCCCACCAAGAGTAAAAGT+AGG 0.658878 7_2:+77612463 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGTGATATAATTATGATTAA+CGG + chr7_2:77612685-77612704 None:intergenic 15.0%
!! AGTAATTTAACTATAGAATT+TGG - chr7_2:77613577-77613596 Msa1078630:CDS 15.0%
!! TGTGATATAATTATGATTAA+CGG + chr7_2:77612685-77612704 None:intergenic 15.0%
!! AGTAATTTAACTATAGAATT+TGG - chr7_2:77613577-77613596 Msa1078630:CDS 15.0%
!! TAGAAAAATACCATTGTTAT+CGG + chr7_2:77612425-77612444 None:intergenic 20.0%
!! TTTCAATTTCTATTTCAATC+CGG - chr7_2:77613013-77613032 Msa1078630:intron 20.0%
!!! ATTAAGTATGTTTAGAATGA+CGG - chr7_2:77613100-77613119 Msa1078630:intron 20.0%
!!! TAGTTAAATTACTTGTTGAT+TGG + chr7_2:77613570-77613589 None:intergenic 20.0%
!! ATGCATATTATTGTAATTGA+TGG - chr7_2:77613628-77613647 Msa1078630:CDS 20.0%
!! TAGAAAAATACCATTGTTAT+CGG + chr7_2:77612425-77612444 None:intergenic 20.0%
!! TTTCAATTTCTATTTCAATC+CGG - chr7_2:77613013-77613032 Msa1078630:intron 20.0%
!!! ATTAAGTATGTTTAGAATGA+CGG - chr7_2:77613100-77613119 Msa1078630:intron 20.0%
!!! TAGTTAAATTACTTGTTGAT+TGG + chr7_2:77613570-77613589 None:intergenic 20.0%
!! ATGCATATTATTGTAATTGA+TGG - chr7_2:77613628-77613647 Msa1078630:CDS 20.0%
! AACATACTACAAATTTGAAG+GGG + chr7_2:77612372-77612391 None:intergenic 25.0%
! GAACATACTACAAATTTGAA+GGG + chr7_2:77612373-77612392 None:intergenic 25.0%
! AATTTGTAGTATGTTCCAAA+AGG - chr7_2:77612377-77612396 Msa1078630:three_prime_UTR 25.0%
! ATTTGTAGTATGTTCCAAAA+GGG - chr7_2:77612378-77612397 Msa1078630:three_prime_UTR 25.0%
! AGATTCGTAAAAATCAAACA+GGG + chr7_2:77612555-77612574 None:intergenic 25.0%
! TAGATTCGTAAAAATCAAAC+AGG + chr7_2:77612556-77612575 None:intergenic 25.0%
! AAAATACAGTGTTTAAGAGA+GGG - chr7_2:77612844-77612863 Msa1078630:intron 25.0%
! GAAATAGAAATTGAAATTCG+CGG + chr7_2:77613009-77613028 None:intergenic 25.0%
! ATGAAACAATTGATCGAAAT+TGG + chr7_2:77613062-77613081 None:intergenic 25.0%
!! TTAAGTATGTTTAGAATGAC+GGG - chr7_2:77613101-77613120 Msa1078630:intron 25.0%
! ATGAAACTCAACTAATTAAC+AGG + chr7_2:77613254-77613273 None:intergenic 25.0%
! AACATACTACAAATTTGAAG+GGG + chr7_2:77612372-77612391 None:intergenic 25.0%
! GAACATACTACAAATTTGAA+GGG + chr7_2:77612373-77612392 None:intergenic 25.0%
! AATTTGTAGTATGTTCCAAA+AGG - chr7_2:77612377-77612396 Msa1078630:three_prime_UTR 25.0%
! ATTTGTAGTATGTTCCAAAA+GGG - chr7_2:77612378-77612397 Msa1078630:three_prime_UTR 25.0%
! AGATTCGTAAAAATCAAACA+GGG + chr7_2:77612555-77612574 None:intergenic 25.0%
! TAGATTCGTAAAAATCAAAC+AGG + chr7_2:77612556-77612575 None:intergenic 25.0%
! AAAATACAGTGTTTAAGAGA+GGG - chr7_2:77612844-77612863 Msa1078630:intron 25.0%
! GAAATAGAAATTGAAATTCG+CGG + chr7_2:77613009-77613028 None:intergenic 25.0%
! ATGAAACAATTGATCGAAAT+TGG + chr7_2:77613062-77613081 None:intergenic 25.0%
!! TTAAGTATGTTTAGAATGAC+GGG - chr7_2:77613101-77613120 Msa1078630:intron 25.0%
! ATGAAACTCAACTAATTAAC+AGG + chr7_2:77613254-77613273 None:intergenic 25.0%
! CTTCTTCATTAGCATTGAAA+TGG - chr7_2:77612249-77612268 Msa1078630:three_prime_UTR 30.0%
AGAAGAGGATGATAAAGTTT+GGG + chr7_2:77612335-77612354 None:intergenic 30.0%
AAGAAGAGGATGATAAAGTT+TGG + chr7_2:77612336-77612355 None:intergenic 30.0%
TACAAATTTGAAGGGGAAAT+AGG + chr7_2:77612365-77612384 None:intergenic 30.0%
GGAACATACTACAAATTTGA+AGG + chr7_2:77612374-77612393 None:intergenic 30.0%
! GCATAAGTTAGTTGTTGATT+CGG - chr7_2:77612771-77612790 Msa1078630:intron 30.0%
CAAAATACAGTGTTTAAGAG+AGG - chr7_2:77612843-77612862 Msa1078630:intron 30.0%
AAATACAGTGTTTAAGAGAG+GGG - chr7_2:77612845-77612864 Msa1078630:intron 30.0%
TTTCCTTCCTAGAAAGTAAT+CGG - chr7_2:77612875-77612894 Msa1078630:intron 30.0%
AAATTCGCGGAATAAAAGAT+TGG + chr7_2:77612996-77613015 None:intergenic 30.0%
! TTTTGCCAAATTCACATAGT+CGG - chr7_2:77613191-77613210 Msa1078630:intron 30.0%
! TGATAAATCATCAACGGATT+GGG - chr7_2:77613311-77613330 Msa1078630:intron 30.0%
TTCCAGCTCACATATTTATT+TGG + chr7_2:77613396-77613415 None:intergenic 30.0%
AAAGATCAAACCTCAAATTC+TGG - chr7_2:77613472-77613491 Msa1078630:intron 30.0%
AATAGAACAGGAATAGAAAC+AGG + chr7_2:77613659-77613678 None:intergenic 30.0%
AAAAGAGAATAACAAATCCG+AGG + chr7_2:77613717-77613736 None:intergenic 30.0%
! CTTCTTCATTAGCATTGAAA+TGG - chr7_2:77612249-77612268 Msa1078630:three_prime_UTR 30.0%
AGAAGAGGATGATAAAGTTT+GGG + chr7_2:77612335-77612354 None:intergenic 30.0%
AAGAAGAGGATGATAAAGTT+TGG + chr7_2:77612336-77612355 None:intergenic 30.0%
TACAAATTTGAAGGGGAAAT+AGG + chr7_2:77612365-77612384 None:intergenic 30.0%
GGAACATACTACAAATTTGA+AGG + chr7_2:77612374-77612393 None:intergenic 30.0%
! GCATAAGTTAGTTGTTGATT+CGG - chr7_2:77612771-77612790 Msa1078630:intron 30.0%
CAAAATACAGTGTTTAAGAG+AGG - chr7_2:77612843-77612862 Msa1078630:intron 30.0%
AAATACAGTGTTTAAGAGAG+GGG - chr7_2:77612845-77612864 Msa1078630:intron 30.0%
TTTCCTTCCTAGAAAGTAAT+CGG - chr7_2:77612875-77612894 Msa1078630:intron 30.0%
AAATTCGCGGAATAAAAGAT+TGG + chr7_2:77612996-77613015 None:intergenic 30.0%
! TTTTGCCAAATTCACATAGT+CGG - chr7_2:77613191-77613210 Msa1078630:intron 30.0%
! TGATAAATCATCAACGGATT+GGG - chr7_2:77613311-77613330 Msa1078630:intron 30.0%
TTCCAGCTCACATATTTATT+TGG + chr7_2:77613396-77613415 None:intergenic 30.0%
AAAGATCAAACCTCAAATTC+TGG - chr7_2:77613472-77613491 Msa1078630:intron 30.0%
AATAGAACAGGAATAGAAAC+AGG + chr7_2:77613659-77613678 None:intergenic 30.0%
AAAAGAGAATAACAAATCCG+AGG + chr7_2:77613717-77613736 None:intergenic 30.0%
! GTAAAATCTGAGATTCGCAA+AGG - chr7_2:77612179-77612198 Msa1078630:three_prime_UTR 35.0%
TTGCAATTTCGTTCTTCCTT+CGG + chr7_2:77612228-77612247 None:intergenic 35.0%
CGATGGGATATAAAAGTTGT+GGG + chr7_2:77612298-77612317 None:intergenic 35.0%
ACGATGGGATATAAAAGTTG+TGG + chr7_2:77612299-77612318 None:intergenic 35.0%
GAAATAGGAATGGAAAGAAG+AGG + chr7_2:77612350-77612369 None:intergenic 35.0%
ATTTGAAGGGGAAATAGGAA+TGG + chr7_2:77612360-77612379 None:intergenic 35.0%
! GAAAACATGTCGCATTTTAG+AGG + chr7_2:77612663-77612682 None:intergenic 35.0%
!! GTACCTCTAATTAGTTCTAG+TGG - chr7_2:77612707-77612726 Msa1078630:intron 35.0%
GATCCACTAGAACTAATTAG+AGG + chr7_2:77612713-77612732 None:intergenic 35.0%
ACAGGCTCATCTAATTAAGT+AGG + chr7_2:77612741-77612760 None:intergenic 35.0%
ACTTATGCAACAAGCTAAAC+AGG + chr7_2:77612759-77612778 None:intergenic 35.0%
AATACAGTGTTTAAGAGAGG+GGG - chr7_2:77612846-77612865 Msa1078630:intron 35.0%
ACCAAGAAGATTCTTGAAAC+CGG + chr7_2:77613035-77613054 None:intergenic 35.0%
CGATCAATTGTTTCATACAG+AGG - chr7_2:77613066-77613085 Msa1078630:intron 35.0%
TAACAGGAAGATTACATGTC+TGG + chr7_2:77613238-77613257 None:intergenic 35.0%
CTCAGGTGATAAATCATCAA+CGG - chr7_2:77613305-77613324 Msa1078630:intron 35.0%
GTGATAAATCATCAACGGAT+TGG - chr7_2:77613310-77613329 Msa1078630:intron 35.0%
CTCCAAATAAATATGTGAGC+TGG - chr7_2:77613391-77613410 Msa1078630:intron 35.0%
GATCTTTCTGTTCTCTTGAT+AGG + chr7_2:77613459-77613478 None:intergenic 35.0%
!! ACTAGTCCTACTTTTACTCT+TGG - chr7_2:77613495-77613514 Msa1078630:intron 35.0%
CTTGACACAATTTATGTCCT+CGG - chr7_2:77613697-77613716 Msa1078630:CDS 35.0%
! GTAAAATCTGAGATTCGCAA+AGG - chr7_2:77612179-77612198 Msa1078630:three_prime_UTR 35.0%
TTGCAATTTCGTTCTTCCTT+CGG + chr7_2:77612228-77612247 None:intergenic 35.0%
CGATGGGATATAAAAGTTGT+GGG + chr7_2:77612298-77612317 None:intergenic 35.0%
ACGATGGGATATAAAAGTTG+TGG + chr7_2:77612299-77612318 None:intergenic 35.0%
GAAATAGGAATGGAAAGAAG+AGG + chr7_2:77612350-77612369 None:intergenic 35.0%
ATTTGAAGGGGAAATAGGAA+TGG + chr7_2:77612360-77612379 None:intergenic 35.0%
! GAAAACATGTCGCATTTTAG+AGG + chr7_2:77612663-77612682 None:intergenic 35.0%
!! GTACCTCTAATTAGTTCTAG+TGG - chr7_2:77612707-77612726 Msa1078630:intron 35.0%
GATCCACTAGAACTAATTAG+AGG + chr7_2:77612713-77612732 None:intergenic 35.0%
ACAGGCTCATCTAATTAAGT+AGG + chr7_2:77612741-77612760 None:intergenic 35.0%
ACTTATGCAACAAGCTAAAC+AGG + chr7_2:77612759-77612778 None:intergenic 35.0%
AATACAGTGTTTAAGAGAGG+GGG - chr7_2:77612846-77612865 Msa1078630:intron 35.0%
ACCAAGAAGATTCTTGAAAC+CGG + chr7_2:77613035-77613054 None:intergenic 35.0%
CGATCAATTGTTTCATACAG+AGG - chr7_2:77613066-77613085 Msa1078630:intron 35.0%
TAACAGGAAGATTACATGTC+TGG + chr7_2:77613238-77613257 None:intergenic 35.0%
CTCAGGTGATAAATCATCAA+CGG - chr7_2:77613305-77613324 Msa1078630:intron 35.0%
GTGATAAATCATCAACGGAT+TGG - chr7_2:77613310-77613329 Msa1078630:intron 35.0%
CTCCAAATAAATATGTGAGC+TGG - chr7_2:77613391-77613410 Msa1078630:intron 35.0%
GATCTTTCTGTTCTCTTGAT+AGG + chr7_2:77613459-77613478 None:intergenic 35.0%
!! ACTAGTCCTACTTTTACTCT+TGG - chr7_2:77613495-77613514 Msa1078630:intron 35.0%
CTTGACACAATTTATGTCCT+CGG - chr7_2:77613697-77613716 Msa1078630:CDS 35.0%
! TCTGAGATTCGCAAAGGATA+AGG - chr7_2:77612185-77612204 Msa1078630:three_prime_UTR 40.0%
GAGGATGATAAAGTTTGGGT+TGG + chr7_2:77612331-77612350 None:intergenic 40.0%
! TTGAGATTGATCGTCCCTTT+TGG + chr7_2:77612395-77612414 None:intergenic 40.0%
CAAAGAAACGCCGATAACAA+TGG - chr7_2:77612412-77612431 Msa1078630:CDS 40.0%
! ATGCCGATTACTTTCTAGGA+AGG + chr7_2:77612881-77612900 None:intergenic 40.0%
! GATCATGCCGATTACTTTCT+AGG + chr7_2:77612885-77612904 None:intergenic 40.0%
! TGAGGGTGTAGGATTCAAAT+TGG - chr7_2:77612927-77612946 Msa1078630:intron 40.0%
TCCGGTTTCAAGAATCTTCT+TGG - chr7_2:77613031-77613050 Msa1078630:intron 40.0%
! CAACACCGACTATGTGAATT+TGG + chr7_2:77613199-77613218 None:intergenic 40.0%
AACTCTTCGTTCAATGTCTC+AGG - chr7_2:77613288-77613307 Msa1078630:intron 40.0%
ATGGTCAAACTTCAAGAAGC+AGG - chr7_2:77613341-77613360 Msa1078630:intron 40.0%
TGGTCAAACTTCAAGAAGCA+GGG - chr7_2:77613342-77613361 Msa1078630:intron 40.0%
AATATGTGAGCTGGAATCCT+AGG - chr7_2:77613400-77613419 Msa1078630:intron 40.0%
GGATCAACTTCTTCAGAAAG+TGG + chr7_2:77613438-77613457 None:intergenic 40.0%
!! TAGGACTAGTCCAGAATTTG+AGG + chr7_2:77613485-77613504 None:intergenic 40.0%
!! AGTCCTACTTTTACTCTTGG+TGG - chr7_2:77613498-77613517 Msa1078630:intron 40.0%
!! GTCCTACTTTTACTCTTGGT+GGG - chr7_2:77613499-77613518 Msa1078630:intron 40.0%
!! TCCTACTTTTACTCTTGGTG+GGG - chr7_2:77613500-77613519 Msa1078630:intron 40.0%
! CTTGTTGATTGGTGCTTGAA+GGG + chr7_2:77613559-77613578 None:intergenic 40.0%
! ACTTGTTGATTGGTGCTTGA+AGG + chr7_2:77613560-77613579 None:intergenic 40.0%
AGTGGAAGAAGCAATAGAAC+AGG + chr7_2:77613671-77613690 None:intergenic 40.0%
CGAGGACATAAATTGTGTCA+AGG + chr7_2:77613699-77613718 None:intergenic 40.0%
! TCTGAGATTCGCAAAGGATA+AGG - chr7_2:77612185-77612204 Msa1078630:three_prime_UTR 40.0%
GAGGATGATAAAGTTTGGGT+TGG + chr7_2:77612331-77612350 None:intergenic 40.0%
! TTGAGATTGATCGTCCCTTT+TGG + chr7_2:77612395-77612414 None:intergenic 40.0%
CAAAGAAACGCCGATAACAA+TGG - chr7_2:77612412-77612431 Msa1078630:CDS 40.0%
! ATGCCGATTACTTTCTAGGA+AGG + chr7_2:77612881-77612900 None:intergenic 40.0%
! GATCATGCCGATTACTTTCT+AGG + chr7_2:77612885-77612904 None:intergenic 40.0%
! TGAGGGTGTAGGATTCAAAT+TGG - chr7_2:77612927-77612946 Msa1078630:intron 40.0%
TCCGGTTTCAAGAATCTTCT+TGG - chr7_2:77613031-77613050 Msa1078630:intron 40.0%
! CAACACCGACTATGTGAATT+TGG + chr7_2:77613199-77613218 None:intergenic 40.0%
AACTCTTCGTTCAATGTCTC+AGG - chr7_2:77613288-77613307 Msa1078630:intron 40.0%
ATGGTCAAACTTCAAGAAGC+AGG - chr7_2:77613341-77613360 Msa1078630:intron 40.0%
TGGTCAAACTTCAAGAAGCA+GGG - chr7_2:77613342-77613361 Msa1078630:intron 40.0%
AATATGTGAGCTGGAATCCT+AGG - chr7_2:77613400-77613419 Msa1078630:intron 40.0%
GGATCAACTTCTTCAGAAAG+TGG + chr7_2:77613438-77613457 None:intergenic 40.0%
!! TAGGACTAGTCCAGAATTTG+AGG + chr7_2:77613485-77613504 None:intergenic 40.0%
!! AGTCCTACTTTTACTCTTGG+TGG - chr7_2:77613498-77613517 Msa1078630:intron 40.0%
!! GTCCTACTTTTACTCTTGGT+GGG - chr7_2:77613499-77613518 Msa1078630:intron 40.0%
!! TCCTACTTTTACTCTTGGTG+GGG - chr7_2:77613500-77613519 Msa1078630:intron 40.0%
! CTTGTTGATTGGTGCTTGAA+GGG + chr7_2:77613559-77613578 None:intergenic 40.0%
! ACTTGTTGATTGGTGCTTGA+AGG + chr7_2:77613560-77613579 None:intergenic 40.0%
AGTGGAAGAAGCAATAGAAC+AGG + chr7_2:77613671-77613690 None:intergenic 40.0%
CGAGGACATAAATTGTGTCA+AGG + chr7_2:77613699-77613718 None:intergenic 40.0%
!! GGTTGGTGAAGAGAAACGAT+GGG + chr7_2:77612314-77612333 None:intergenic 45.0%
!! ATCATCAACGGATTGGGACA+AGG - chr7_2:77613317-77613336 Msa1078630:intron 45.0%
AGTGGAAAATCTGAACGCCT+AGG + chr7_2:77613420-77613439 None:intergenic 45.0%
AATTGTGTCAAGGACTCGAG+TGG + chr7_2:77613689-77613708 None:intergenic 45.0%
!! GGTTGGTGAAGAGAAACGAT+GGG + chr7_2:77612314-77612333 None:intergenic 45.0%
!! ATCATCAACGGATTGGGACA+AGG - chr7_2:77613317-77613336 Msa1078630:intron 45.0%
AGTGGAAAATCTGAACGCCT+AGG + chr7_2:77613420-77613439 None:intergenic 45.0%
AATTGTGTCAAGGACTCGAG+TGG + chr7_2:77613689-77613708 None:intergenic 45.0%
!! GGGTTGGTGAAGAGAAACGA+TGG + chr7_2:77612315-77612334 None:intergenic 50.0%
! TGCAGAGGTTGACTTCAGTG+AGG - chr7_2:77612909-77612928 Msa1078630:intron 50.0%
! GCAGAGGTTGACTTCAGTGA+GGG - chr7_2:77612910-77612929 Msa1078630:intron 50.0%
! GTTGACTTCAGTGAGGGTGT+AGG - chr7_2:77612916-77612935 Msa1078630:intron 50.0%
GCCCCACCAAGAGTAAAAGT+AGG + chr7_2:77613504-77613523 None:intergenic 50.0%
!! GGGTTGGTGAAGAGAAACGA+TGG + chr7_2:77612315-77612334 None:intergenic 50.0%
! TGCAGAGGTTGACTTCAGTG+AGG - chr7_2:77612909-77612928 Msa1078630:intron 50.0%
! GCAGAGGTTGACTTCAGTGA+GGG - chr7_2:77612910-77612929 Msa1078630:intron 50.0%
! GTTGACTTCAGTGAGGGTGT+AGG - chr7_2:77612916-77612935 Msa1078630:intron 50.0%
GCCCCACCAAGAGTAAAAGT+AGG + chr7_2:77613504-77613523 None:intergenic 50.0%
AGAAGCTCCAGTTGAGCCGA+AGG - chr7_2:77612209-77612228 Msa1078630:three_prime_UTR 55.0%
CGTTCTTCCTTCGGCTCAAC+TGG + chr7_2:77612219-77612238 None:intergenic 55.0%
TCGGCATGATCATCGTGCAG+AGG - chr7_2:77612894-77612913 Msa1078630:intron 55.0%
!! CAACGGATTGGGACAAGGCA+TGG - chr7_2:77613322-77613341 Msa1078630:intron 55.0%
AGAAGCTCCAGTTGAGCCGA+AGG - chr7_2:77612209-77612228 Msa1078630:three_prime_UTR 55.0%
CGTTCTTCCTTCGGCTCAAC+TGG + chr7_2:77612219-77612238 None:intergenic 55.0%
TCGGCATGATCATCGTGCAG+AGG - chr7_2:77612894-77612913 Msa1078630:intron 55.0%
!! CAACGGATTGGGACAAGGCA+TGG - chr7_2:77613322-77613341 Msa1078630:intron 55.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 77612172 77613814 77612172 ID=Msa1078630;Name=Msa1078630
chr7_2 mRNA 77612172 77613814 77612172 ID=Msa1078630-mRNA-1;Parent=Msa1078630;Name=Msa1078630-mRNA-1;_AED=0.12;_eAED=0.12;_QI=96|1|1|1|0|0|2|233|145
chr7_2 exon 77612172 77612676 77612172 ID=Msa1078630-mRNA-1:exon:19092;Parent=Msa1078630-mRNA-1
chr7_2 exon 77613553 77613814 77613553 ID=Msa1078630-mRNA-1:exon:19091;Parent=Msa1078630-mRNA-1
chr7_2 five_prime_UTR 77613719 77613814 77613719 ID=Msa1078630-mRNA-1:five_prime_utr;Parent=Msa1078630-mRNA-1
chr7_2 CDS 77613553 77613718 77613553 ID=Msa1078630-mRNA-1:cds;Parent=Msa1078630-mRNA-1
chr7_2 CDS 77612405 77612676 77612405 ID=Msa1078630-mRNA-1:cds;Parent=Msa1078630-mRNA-1
chr7_2 three_prime_UTR 77612172 77612404 77612172 ID=Msa1078630-mRNA-1:three_prime_utr;Parent=Msa1078630-mRNA-1
Gene Sequence

>Msa1078630

ATGGATATTCATAGACACATTTCAATACCCACAACTTTTATATCCCATCGTTTCTCTTCACCAACCCAAACTTTATCATCCTCTTCTTTCCATTCCTATTTCCCCTTCAAATTTGTAGTATGTTCCAAAAGGGACGATCAATCTCAAAGAAACGCCGATAACAATGGTGATAAATCATCAACGGATTGGGACAAGGCATGGTCAAACTTCAAGAAGCAGGGAAAAAAAACTCTCTTCTCAAATTTTTCTCCAAATAAATATGTGAGCTGGAATCCTAGGCGTTCAGATTTTCCACTTTCTGAAGAAGTTGATCCTATCAAGAGAACAGAAAGATCAAACCTCAAATTCTGGACTAGTCCTACTTTTACTCTTGGTGGGGCACTTATTATTCTCATAGTTCTTTTGTTGTACACCCTTCAAGCACCAATCAACAAGTAA

Protein sequence

>Msa1078630

MDIHRHISIPTTFISHRFSSPTQTLSSSSFHSYFPFKFVVCSKRDDQSQRNADNNGDKSSTDWDKAWSNFKKQGKKTLFSNFSPNKYVSWNPRRSDFPLSEEVDPIKRTERSNLKFWTSPTFTLGGALIILIVLLLYTLQAPINK*