AlfalfaGEDB | Msa1125310

M. sativa cultivar zhongmu-4 / Msa1125310

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1125310	XP_003625796.1	91.057	369	7	2	1	369	1	343	0.0	670

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1125310	sp\|Q94JY0\|PAB_ARATH	72.937	303	78	1	66	368	30	328	2.03e-161	458

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1125310	G7L617	91.057	369	7	2	1	369	1	343	0.0	670

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001510	Msa1125310	0.889282	2.783913e-73	-8.615850e-47
Msa0001540	Msa1125310	0.818031	2.423078e-52	-8.615850e-47
Msa0002110	Msa1125310	0.802790	4.745399e-49	-8.615850e-47
Msa0002690	Msa1125310	0.866417	2.895401e-65	-8.615850e-47
Msa0002700	Msa1125310	0.860702	1.718559e-63	-8.615850e-47
Msa0003340	Msa1125310	0.804702	1.902619e-49	-8.615850e-47
Msa0004180	Msa1125310	0.839493	1.533644e-57	-8.615850e-47
Msa0007570	Msa1125310	0.855956	4.453930e-62	-8.615850e-47
Msa0008250	Msa1125310	0.817507	3.181311e-52	-8.615850e-47
Msa0011060	Msa1125310	0.814450	1.531022e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1125310	MtrunA17_Chr7g0266141	91.057	369	7	2	1	369	1	343	0.0	670

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1125310	AT4G34090.1	72.937	303	78	1	66	368	30	328	2.07e-162	458
Msa1125310	AT4G34090.3	71.845	309	77	2	66	368	84	388	2.51e-159	452
Msa1125310	AT2G23370.1	65.246	305	106	0	65	369	35	339	4.52e-152	432
Msa1125310	AT2G23370.2	65.734	286	98	0	84	369	2	287	6.30e-143	407
Msa1125310	AT4G34090.2	73.575	193	47	1	66	258	30	218	2.58e-99	294

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Find 110 sgRNAs with CRISPR-Local

Find 269 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGGAAGGCGCCTGCGC+AGG	0.507009	7_3:-76720299	Msa1125310:intron
AAAATGGAGCCTCACTGGGG+TGG	0.599428	7_3:+76721498	None:intergenic
AAATCAATTGCAGGTTGTAC+TGG	0.386654	7_3:-76720169	Msa1125310:intron
AAATCACCATGGTGGACTCT+AGG	0.500907	7_3:-76720536	Msa1125310:CDS
AACAATTAAAATAAGATGAG+AGG	0.561716	7_3:+76723136	None:intergenic
AACAGATATAGGGAGTGTGG+AGG	0.602314	7_3:-76723320	Msa1125310:five_prime_UTR
AACGGCAATGAATCAAAGAA+AGG	0.554422	7_3:-76719687	Msa1125310:three_prime_UTR
AACTGCATAAAGGTATCTTT+CGG	0.448787	7_3:+76719734	None:intergenic
AAGACATTGAAGTCTATAAA+TGG	0.326602	7_3:+76719996	None:intergenic
AAGAGTTGTGAAAGATGGTG+AGG	0.571084	7_3:+76723035	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GATAAAGTGAAGAATGGTAA+AGG	+	chr7_3:76719713-76719732	None:intergenic	30.0%
ACAATGGATAAAGTGAAGAA+TGG	+	chr7_3:76719719-76719738	None:intergenic	30.0%
ATTCTTCACTTTATCCATTG+TGG	-	chr7_3:76719718-76719737	Msa1125310:three_prime_UTR	30.0%
ATCTCTGATATCATTCACTT+AGG	-	chr7_3:76720122-76720141	Msa1125310:CDS	30.0%
TCTCTGATATCATTCACTTA+GGG	-	chr7_3:76720123-76720142	Msa1125310:CDS	30.0%
TTACCAACTTAATCTCATTC+CGG	-	chr7_3:76720398-76720417	Msa1125310:intron	30.0%
TCCCTACAAATACTATTAGA+GGG	-	chr7_3:76720421-76720440	Msa1125310:intron	30.0%
TCCCTCTAATAGTATTTGTA+GGG	+	chr7_3:76720425-76720444	None:intergenic	30.0%
ATCCCTCTAATAGTATTTGT+AGG	+	chr7_3:76720426-76720445	None:intergenic	30.0%
CTTAAACACATTAGGCTTAT+GGG	+	chr7_3:76720547-76720566	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	76719500	76723342	76719500	ID=Msa1125310;Name=Msa1125310
chr7_3	mRNA	76719500	76723342	76719500	ID=Msa1125310-mRNA-1;Parent=Msa1125310;Name=Msa1125310-mRNA-1;_AED=0.13;_eAED=0.13;_QI=51\|1\|1\|1\|1\|1\|10\|541\|369
chr7_3	exon	76719500	76720178	76719500	ID=Msa1125310-mRNA-1:exon:21051;Parent=Msa1125310-mRNA-1
chr7_3	exon	76720300	76720410	76720300	ID=Msa1125310-mRNA-1:exon:21050;Parent=Msa1125310-mRNA-1
chr7_3	exon	76720523	76720604	76720523	ID=Msa1125310-mRNA-1:exon:21049;Parent=Msa1125310-mRNA-1
chr7_3	exon	76720720	76720814	76720720	ID=Msa1125310-mRNA-1:exon:21048;Parent=Msa1125310-mRNA-1
chr7_3	exon	76720912	76720974	76720912	ID=Msa1125310-mRNA-1:exon:21047;Parent=Msa1125310-mRNA-1
chr7_3	exon	76721047	76721214	76721047	ID=Msa1125310-mRNA-1:exon:21046;Parent=Msa1125310-mRNA-1
chr7_3	exon	76721374	76721431	76721374	ID=Msa1125310-mRNA-1:exon:21045;Parent=Msa1125310-mRNA-1
chr7_3	exon	76721513	76721555	76721513	ID=Msa1125310-mRNA-1:exon:21044;Parent=Msa1125310-mRNA-1
chr7_3	exon	76721906	76721980	76721906	ID=Msa1125310-mRNA-1:exon:21043;Parent=Msa1125310-mRNA-1
chr7_3	exon	76723015	76723342	76723015	ID=Msa1125310-mRNA-1:exon:21042;Parent=Msa1125310-mRNA-1
chr7_3	five_prime_UTR	76723292	76723342	76723292	ID=Msa1125310-mRNA-1:five_prime_utr;Parent=Msa1125310-mRNA-1
chr7_3	CDS	76723015	76723291	76723015	ID=Msa1125310-mRNA-1:cds;Parent=Msa1125310-mRNA-1
chr7_3	CDS	76721906	76721980	76721906	ID=Msa1125310-mRNA-1:cds;Parent=Msa1125310-mRNA-1
chr7_3	CDS	76721513	76721555	76721513	ID=Msa1125310-mRNA-1:cds;Parent=Msa1125310-mRNA-1
chr7_3	CDS	76721374	76721431	76721374	ID=Msa1125310-mRNA-1:cds;Parent=Msa1125310-mRNA-1
chr7_3	CDS	76721047	76721214	76721047	ID=Msa1125310-mRNA-1:cds;Parent=Msa1125310-mRNA-1
chr7_3	CDS	76720912	76720974	76720912	ID=Msa1125310-mRNA-1:cds;Parent=Msa1125310-mRNA-1
chr7_3	CDS	76720720	76720814	76720720	ID=Msa1125310-mRNA-1:cds;Parent=Msa1125310-mRNA-1
chr7_3	CDS	76720523	76720604	76720523	ID=Msa1125310-mRNA-1:cds;Parent=Msa1125310-mRNA-1
chr7_3	CDS	76720300	76720410	76720300	ID=Msa1125310-mRNA-1:cds;Parent=Msa1125310-mRNA-1
chr7_3	CDS	76720041	76720178	76720041	ID=Msa1125310-mRNA-1:cds;Parent=Msa1125310-mRNA-1
chr7_3	three_prime_UTR	76719500	76720040	76719500	ID=Msa1125310-mRNA-1:three_prime_utr;Parent=Msa1125310-mRNA-1

Gene Sequence

>Msa1125310

ATGAAGATGAGCGGCGGAGTATTGTGTGGCGGAAGTTCACGCAGCAGCAACGCCGTGCCTCTGTTTCTCAACCACCGTGCAGCTTCTCTTCGCATCTCTTCTTCTTCCTCCATTCCTGGTAACACTATTCTCTCCTCTCATCTTATTTTAATTGTTCGTCCTTTACCATTCTTCACTTTATCCATTGTGGCAGAGCATGTTTCTTTTGTAAAGGACGTAGCTGTAACTCAACCTCCTCACCATCTTTCACAACTCTTGACTATCTTGAAAACCAGAGGTGAAACAATTATTTCTCCGGGTGCCAAGCAAGGATTAATCCCCCTTGCTATTCCCCTGTCAAAAAACAGCTCGGGTTCTGTAACTGCACTGCTGCGATGGCCCACGGCTCCACCCCAATTGGAAATGCCGGTGGTGGAAGTGAAAAAACACGGAGTGTGGCTTTTAGCTAAGACTGTAGACCAATATATTCACAGGATATTGGTTGAAGAAGATGCGAAGGACAGTCAAGAGAGAAATGAAGAACTCTTCAAGGCTTCAGCTGATGCTGGAGAAAAGCTTTATAGAAAGGGTGATTTTGCCGAGTCTGGGATTTCTAACTTAGACAGCTATCTTCTGAAAAAGGTTGGTATATTTCCTGATGTCTTAGAGCGCAAAGTGAAGCGGCATTTTGATGAAGGAGATCAGGTTTCAGCTTTAGTAACGGGGGAATTTTATACAAAGAAGGAGCATTTTCCAGGATTTGCACGACCTTTTGTGTTCAATGCTGAGGTTATGTTGAGGGTTGGGCGTAAAGTAGAAGCTAAAGATGCTGCCAGGGGAGCTTTAAAATCACCATGGTGGACTCTAGGCTGCATGTATAGGGACGTTGCTGATATAGCCCAATGGGACGATGAGCAAATTGAGTATATTAAGGAGAAGGTGACTGAAGAGGGAAGGCAAGAAGATCTTAAAAAAGGGAAGGCGCCTGCGCAGGTTGTACTGGATGAAGCAGCTTTCTTGTTAGATTTGGCTTCTATAGAGGGAAATTGGGACGACTATTTGGAACGGATTGCCAAATGTTACGAGGAAGGAGGGCTCGACGATATTGCAAAATTCATTCTTTACAAATAA

Protein sequence

>Msa1125310

MKMSGGVLCGGSSRSSNAVPLFLNHRAASLRISSSSSIPGNTILSSHLILIVRPLPFFTLSIVAEHVSFVKDVAVTQPPHHLSQLLTILKTRGETIISPGAKQGLIPLAIPLSKNSSGSVTALLRWPTAPPQLEMPVVEVKKHGVWLLAKTVDQYIHRILVEEDAKDSQERNEELFKASADAGEKLYRKGDFAESGISNLDSYLLKKVGIFPDVLERKVKRHFDEGDQVSALVTGEFYTKKEHFPGFARPFVFNAEVMLRVGRKVEAKDAARGALKSPWWTLGCMYRDVADIAQWDDEQIEYIKEKVTEEGRQEDLKKGKAPAQVVLDEAAFLLDLASIEGNWDDYLERIAKCYEEGGLDDIAKFILYK*