AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1078800


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1078800 MtrunA17_Chr7g0263571 98.621 145 2 0 1 145 1 145 2.03e-103 291
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1078800 AT3G53470.2 68.750 96 30 0 48 143 40 135 1.17e-43 140
Msa1078800 AT3G53470.1 71.111 90 26 0 54 143 45 134 5.50e-42 136

Find 51 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCAGCTCACATATTTATT+TGG 0.178393 7_2:+77793527 None:intergenic
AGTAATTTAACTATAGAATT+TGG 0.204600 7_2:-77793343 Msa1078800:exon
CGTTCTTCCTTCGGCTCAAC+TGG 0.259066 7_2:+77794716 None:intergenic
GATCTTTCTGTTCTCTTGAT+AGG 0.273479 7_2:+77793464 None:intergenic
ATGCATATTATTGTAATTGA+TGG 0.281843 7_2:-77793292 Msa1078800:three_prime_UTR
TACAAATTTGAAGGGGAAAT+AGG 0.290190 7_2:+77794570 None:intergenic
AAGAAGAGGATGATAAAGTT+TGG 0.290458 7_2:+77794599 None:intergenic
TTGAGATTGATCGTCCCTTT+TGG 0.300645 7_2:+77794540 None:intergenic
AAAGATCAAACCTCAAATTC+TGG 0.301138 7_2:-77793448 Msa1078800:CDS
CTTCTTCATTAGCATTGAAA+TGG 0.351444 7_2:-77794683 Msa1078800:exon
TTGCAATTTCGTTCTTCCTT+CGG 0.373637 7_2:+77794707 None:intergenic
TAGTTAAATTACTTGTTGAT+TGG 0.406008 7_2:+77793353 None:intergenic
AGAAGAGGATGATAAAGTTT+GGG 0.426783 7_2:+77794600 None:intergenic
AATAGAACAGGAATAGAAAC+AGG 0.428545 7_2:+77793264 None:intergenic
TGATAAATCATCAACGGATT+GGG 0.428760 7_2:-77793609 Msa1078800:CDS
GGAACATACTACAAATTTGA+AGG 0.434060 7_2:+77794561 None:intergenic
TCTGAGATTCGCAAAGGATA+AGG 0.456294 7_2:-77794747 Msa1078800:five_prime_UTR
CTTGACACAATTTATGTCCT+CGG 0.459402 7_2:-77793223 Msa1078800:three_prime_UTR
AATTTGTAGTATGTTCCAAA+AGG 0.463127 7_2:-77794555 Msa1078800:CDS
GTGATAAATCATCAACGGAT+TGG 0.467245 7_2:-77793610 Msa1078800:CDS
TAGGACTAGTCCAGAATTTG+AGG 0.468478 7_2:+77793438 None:intergenic
ACTTGTTGATTGGTGCTTGA+AGG 0.468811 7_2:+77793363 None:intergenic
CTCCAAATAAATATGTGAGC+TGG 0.474358 7_2:-77793529 Msa1078800:CDS
ATGGTCAAACTTCAAGAAGC+AGG 0.484213 7_2:-77793579 Msa1078800:CDS
CGATGGGATATAAAAGTTGT+GGG 0.484995 7_2:+77794637 None:intergenic
CTTGTTGATTGGTGCTTGAA+GGG 0.491316 7_2:+77793364 None:intergenic
AATATGTGAGCTGGAATCCT+AGG 0.492726 7_2:-77793520 Msa1078800:CDS
GAACATACTACAAATTTGAA+GGG 0.501237 7_2:+77794562 None:intergenic
GGATCAACTTCTTCAGAAAG+TGG 0.503418 7_2:+77793485 None:intergenic
AGTGGAAGAAGCAATAGAAC+AGG 0.515941 7_2:+77793252 None:intergenic
AGAAGCTCCAGTTGAGCCGA+AGG 0.516045 7_2:-77794723 Msa1078800:five_prime_UTR
GAGGATGATAAAGTTTGGGT+TGG 0.520750 7_2:+77794604 None:intergenic
ATTTGTAGTATGTTCCAAAA+GGG 0.522502 7_2:-77794554 Msa1078800:CDS
GCAAAAGTTGCACTTTGGAA+TGG 0.524395 7_2:+77793119 None:intergenic
ACGATGGGATATAAAAGTTG+TGG 0.530720 7_2:+77794636 None:intergenic
ATTTGAAGGGGAAATAGGAA+TGG 0.544166 7_2:+77794575 None:intergenic
CAACGGATTGGGACAAGGCA+TGG 0.546580 7_2:-77793598 Msa1078800:CDS
GAAATAGGAATGGAAAGAAG+AGG 0.566566 7_2:+77794585 None:intergenic
GGGTTGGTGAAGAGAAACGA+TGG 0.569268 7_2:+77794620 None:intergenic
GGTTGGTGAAGAGAAACGAT+GGG 0.586305 7_2:+77794621 None:intergenic
CAAAGAAACGCCGATAACAA+TGG 0.593112 7_2:-77794520 Msa1078800:intron
ATCATCAACGGATTGGGACA+AGG 0.594053 7_2:-77793603 Msa1078800:CDS
AGTGGAAAATCTGAACGCCT+AGG 0.596558 7_2:+77793503 None:intergenic
CTCAGGTGATAAATCATCAA+CGG 0.602810 7_2:-77793615 Msa1078800:intron
CGAGGACATAAATTGTGTCA+AGG 0.609330 7_2:+77793224 None:intergenic
AACATACTACAAATTTGAAG+GGG 0.613458 7_2:+77794563 None:intergenic
TGGTCAAACTTCAAGAAGCA+GGG 0.615004 7_2:-77793578 Msa1078800:CDS
GTAAAATCTGAGATTCGCAA+AGG 0.620857 7_2:-77794753 Msa1078800:five_prime_UTR
AATTGTGTCAAGGACTCGAG+TGG 0.625018 7_2:+77793234 None:intergenic
AAAAGAGAATAACAAATCCG+AGG 0.655714 7_2:+77793206 None:intergenic
GCCCCACCAAGAGTAAAAGT+AGG 0.658878 7_2:+77793419 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGTGATATAATTATGATTAA+CGG + chr7_2:77793641-77793660 None:intergenic 15.0%
!! AGTAATTTAACTATAGAATT+TGG - chr7_2:77794545-77794564 Msa1078800:CDS 15.0%
!! TGTGATATAATTATGATTAA+CGG + chr7_2:77793641-77793660 None:intergenic 15.0%
!! AGTAATTTAACTATAGAATT+TGG - chr7_2:77794545-77794564 Msa1078800:CDS 15.0%
!! TAGAAAAATACCATTGTTAT+CGG + chr7_2:77793381-77793400 None:intergenic 20.0%
!! TTTCAATTTCTATTTCAATC+CGG - chr7_2:77793969-77793988 Msa1078800:intron 20.0%
!!! ATTAAGTATGTTTAGAATGA+CGG - chr7_2:77794056-77794075 Msa1078800:intron 20.0%
!!! TAGTTAAATTACTTGTTGAT+TGG + chr7_2:77794538-77794557 None:intergenic 20.0%
!! ATGCATATTATTGTAATTGA+TGG - chr7_2:77794596-77794615 Msa1078800:CDS 20.0%
!! TAGAAAAATACCATTGTTAT+CGG + chr7_2:77793381-77793400 None:intergenic 20.0%
!! TTTCAATTTCTATTTCAATC+CGG - chr7_2:77793969-77793988 Msa1078800:intron 20.0%
!!! ATTAAGTATGTTTAGAATGA+CGG - chr7_2:77794056-77794075 Msa1078800:intron 20.0%
!!! TAGTTAAATTACTTGTTGAT+TGG + chr7_2:77794538-77794557 None:intergenic 20.0%
!! ATGCATATTATTGTAATTGA+TGG - chr7_2:77794596-77794615 Msa1078800:CDS 20.0%
! AACATACTACAAATTTGAAG+GGG + chr7_2:77793328-77793347 None:intergenic 25.0%
! GAACATACTACAAATTTGAA+GGG + chr7_2:77793329-77793348 None:intergenic 25.0%
! AATTTGTAGTATGTTCCAAA+AGG - chr7_2:77793333-77793352 Msa1078800:three_prime_UTR 25.0%
! ATTTGTAGTATGTTCCAAAA+GGG - chr7_2:77793334-77793353 Msa1078800:three_prime_UTR 25.0%
! AGATTCGTAAAAATCAAACA+GGG + chr7_2:77793511-77793530 None:intergenic 25.0%
! TAGATTCGTAAAAATCAAAC+AGG + chr7_2:77793512-77793531 None:intergenic 25.0%
! AAAATACAGTGTTTAAGAGA+GGG - chr7_2:77793800-77793819 Msa1078800:intron 25.0%
! GAAATAGAAATTGAAATTCG+CGG + chr7_2:77793965-77793984 None:intergenic 25.0%
! ATGAAACAATTGATCGAAAT+TGG + chr7_2:77794018-77794037 None:intergenic 25.0%
!! TTAAGTATGTTTAGAATGAC+GGG - chr7_2:77794057-77794076 Msa1078800:intron 25.0%
! ATGAAACTCAACTAATTAAC+AGG + chr7_2:77794211-77794230 None:intergenic 25.0%
! AACATACTACAAATTTGAAG+GGG + chr7_2:77793328-77793347 None:intergenic 25.0%
! GAACATACTACAAATTTGAA+GGG + chr7_2:77793329-77793348 None:intergenic 25.0%
! AATTTGTAGTATGTTCCAAA+AGG - chr7_2:77793333-77793352 Msa1078800:three_prime_UTR 25.0%
! ATTTGTAGTATGTTCCAAAA+GGG - chr7_2:77793334-77793353 Msa1078800:three_prime_UTR 25.0%
! AGATTCGTAAAAATCAAACA+GGG + chr7_2:77793511-77793530 None:intergenic 25.0%
! TAGATTCGTAAAAATCAAAC+AGG + chr7_2:77793512-77793531 None:intergenic 25.0%
! AAAATACAGTGTTTAAGAGA+GGG - chr7_2:77793800-77793819 Msa1078800:intron 25.0%
! GAAATAGAAATTGAAATTCG+CGG + chr7_2:77793965-77793984 None:intergenic 25.0%
! ATGAAACAATTGATCGAAAT+TGG + chr7_2:77794018-77794037 None:intergenic 25.0%
!! TTAAGTATGTTTAGAATGAC+GGG - chr7_2:77794057-77794076 Msa1078800:intron 25.0%
! ATGAAACTCAACTAATTAAC+AGG + chr7_2:77794211-77794230 None:intergenic 25.0%
! CTTCTTCATTAGCATTGAAA+TGG - chr7_2:77793205-77793224 Msa1078800:three_prime_UTR 30.0%
AGAAGAGGATGATAAAGTTT+GGG + chr7_2:77793291-77793310 None:intergenic 30.0%
AAGAAGAGGATGATAAAGTT+TGG + chr7_2:77793292-77793311 None:intergenic 30.0%
TACAAATTTGAAGGGGAAAT+AGG + chr7_2:77793321-77793340 None:intergenic 30.0%
GGAACATACTACAAATTTGA+AGG + chr7_2:77793330-77793349 None:intergenic 30.0%
! GCATAAGTTAGTTGTTGATT+CGG - chr7_2:77793727-77793746 Msa1078800:intron 30.0%
CAAAATACAGTGTTTAAGAG+AGG - chr7_2:77793799-77793818 Msa1078800:intron 30.0%
AAATACAGTGTTTAAGAGAG+GGG - chr7_2:77793801-77793820 Msa1078800:intron 30.0%
TTTCCTTCCTAGAAAGTAAT+CGG - chr7_2:77793831-77793850 Msa1078800:intron 30.0%
! TAAGTATGTTTAGAATGACG+GGG - chr7_2:77794058-77794077 Msa1078800:intron 30.0%
! TTTTGCCAAATTCACATAGT+CGG - chr7_2:77794148-77794167 Msa1078800:intron 30.0%
! TGATAAATCATCAACGGATT+GGG - chr7_2:77794279-77794298 Msa1078800:intron 30.0%
TTCCAGCTCACATATTTATT+TGG + chr7_2:77794364-77794383 None:intergenic 30.0%
AAAGATCAAACCTCAAATTC+TGG - chr7_2:77794440-77794459 Msa1078800:intron 30.0%
AATAGAACAGGAATAGAAAC+AGG + chr7_2:77794627-77794646 None:intergenic 30.0%
AAAAGAGAATAACAAATCCG+AGG + chr7_2:77794685-77794704 None:intergenic 30.0%
! CTTCTTCATTAGCATTGAAA+TGG - chr7_2:77793205-77793224 Msa1078800:three_prime_UTR 30.0%
AGAAGAGGATGATAAAGTTT+GGG + chr7_2:77793291-77793310 None:intergenic 30.0%
AAGAAGAGGATGATAAAGTT+TGG + chr7_2:77793292-77793311 None:intergenic 30.0%
TACAAATTTGAAGGGGAAAT+AGG + chr7_2:77793321-77793340 None:intergenic 30.0%
GGAACATACTACAAATTTGA+AGG + chr7_2:77793330-77793349 None:intergenic 30.0%
! GCATAAGTTAGTTGTTGATT+CGG - chr7_2:77793727-77793746 Msa1078800:intron 30.0%
CAAAATACAGTGTTTAAGAG+AGG - chr7_2:77793799-77793818 Msa1078800:intron 30.0%
AAATACAGTGTTTAAGAGAG+GGG - chr7_2:77793801-77793820 Msa1078800:intron 30.0%
TTTCCTTCCTAGAAAGTAAT+CGG - chr7_2:77793831-77793850 Msa1078800:intron 30.0%
! TAAGTATGTTTAGAATGACG+GGG - chr7_2:77794058-77794077 Msa1078800:intron 30.0%
! TTTTGCCAAATTCACATAGT+CGG - chr7_2:77794148-77794167 Msa1078800:intron 30.0%
! TGATAAATCATCAACGGATT+GGG - chr7_2:77794279-77794298 Msa1078800:intron 30.0%
TTCCAGCTCACATATTTATT+TGG + chr7_2:77794364-77794383 None:intergenic 30.0%
AAAGATCAAACCTCAAATTC+TGG - chr7_2:77794440-77794459 Msa1078800:intron 30.0%
AATAGAACAGGAATAGAAAC+AGG + chr7_2:77794627-77794646 None:intergenic 30.0%
AAAAGAGAATAACAAATCCG+AGG + chr7_2:77794685-77794704 None:intergenic 30.0%
! GTAAAATCTGAGATTCGCAA+AGG - chr7_2:77793135-77793154 Msa1078800:three_prime_UTR 35.0%
TTGCAATTTCGTTCTTCCTT+CGG + chr7_2:77793184-77793203 None:intergenic 35.0%
CGATGGGATATAAAAGTTGT+GGG + chr7_2:77793254-77793273 None:intergenic 35.0%
ACGATGGGATATAAAAGTTG+TGG + chr7_2:77793255-77793274 None:intergenic 35.0%
GAAATAGGAATGGAAAGAAG+AGG + chr7_2:77793306-77793325 None:intergenic 35.0%
ATTTGAAGGGGAAATAGGAA+TGG + chr7_2:77793316-77793335 None:intergenic 35.0%
! GAAAACATGTCGCATTTTAG+AGG + chr7_2:77793619-77793638 None:intergenic 35.0%
!! GTACCTCTAATTAGTTCTAG+TGG - chr7_2:77793663-77793682 Msa1078800:intron 35.0%
GATCCACTAGAACTAATTAG+AGG + chr7_2:77793669-77793688 None:intergenic 35.0%
ACAGGCTCATCTAATTAAGT+AGG + chr7_2:77793697-77793716 None:intergenic 35.0%
ACTTATGCAACAAGCTAAAC+AGG + chr7_2:77793715-77793734 None:intergenic 35.0%
AATACAGTGTTTAAGAGAGG+GGG - chr7_2:77793802-77793821 Msa1078800:intron 35.0%
ACCAAGAAGATTCTTGAAAC+CGG + chr7_2:77793991-77794010 None:intergenic 35.0%
CGATCAATTGTTTCATACAG+AGG - chr7_2:77794022-77794041 Msa1078800:intron 35.0%
TAACAGGAAGATTACATGTC+TGG + chr7_2:77794195-77794214 None:intergenic 35.0%
CTCAGGTGATAAATCATCAA+CGG - chr7_2:77794273-77794292 Msa1078800:intron 35.0%
GTGATAAATCATCAACGGAT+TGG - chr7_2:77794278-77794297 Msa1078800:intron 35.0%
CTCCAAATAAATATGTGAGC+TGG - chr7_2:77794359-77794378 Msa1078800:intron 35.0%
GATCTTTCTGTTCTCTTGAT+AGG + chr7_2:77794427-77794446 None:intergenic 35.0%
!! ACTAGTCCTACTTTTACTCT+TGG - chr7_2:77794463-77794482 Msa1078800:intron 35.0%
CTTGACACAATTTATGTCCT+CGG - chr7_2:77794665-77794684 Msa1078800:CDS 35.0%
! GTAAAATCTGAGATTCGCAA+AGG - chr7_2:77793135-77793154 Msa1078800:three_prime_UTR 35.0%
TTGCAATTTCGTTCTTCCTT+CGG + chr7_2:77793184-77793203 None:intergenic 35.0%
CGATGGGATATAAAAGTTGT+GGG + chr7_2:77793254-77793273 None:intergenic 35.0%
ACGATGGGATATAAAAGTTG+TGG + chr7_2:77793255-77793274 None:intergenic 35.0%
GAAATAGGAATGGAAAGAAG+AGG + chr7_2:77793306-77793325 None:intergenic 35.0%
ATTTGAAGGGGAAATAGGAA+TGG + chr7_2:77793316-77793335 None:intergenic 35.0%
! GAAAACATGTCGCATTTTAG+AGG + chr7_2:77793619-77793638 None:intergenic 35.0%
!! GTACCTCTAATTAGTTCTAG+TGG - chr7_2:77793663-77793682 Msa1078800:intron 35.0%
GATCCACTAGAACTAATTAG+AGG + chr7_2:77793669-77793688 None:intergenic 35.0%
ACAGGCTCATCTAATTAAGT+AGG + chr7_2:77793697-77793716 None:intergenic 35.0%
ACTTATGCAACAAGCTAAAC+AGG + chr7_2:77793715-77793734 None:intergenic 35.0%
AATACAGTGTTTAAGAGAGG+GGG - chr7_2:77793802-77793821 Msa1078800:intron 35.0%
ACCAAGAAGATTCTTGAAAC+CGG + chr7_2:77793991-77794010 None:intergenic 35.0%
CGATCAATTGTTTCATACAG+AGG - chr7_2:77794022-77794041 Msa1078800:intron 35.0%
TAACAGGAAGATTACATGTC+TGG + chr7_2:77794195-77794214 None:intergenic 35.0%
CTCAGGTGATAAATCATCAA+CGG - chr7_2:77794273-77794292 Msa1078800:intron 35.0%
GTGATAAATCATCAACGGAT+TGG - chr7_2:77794278-77794297 Msa1078800:intron 35.0%
CTCCAAATAAATATGTGAGC+TGG - chr7_2:77794359-77794378 Msa1078800:intron 35.0%
GATCTTTCTGTTCTCTTGAT+AGG + chr7_2:77794427-77794446 None:intergenic 35.0%
!! ACTAGTCCTACTTTTACTCT+TGG - chr7_2:77794463-77794482 Msa1078800:intron 35.0%
CTTGACACAATTTATGTCCT+CGG - chr7_2:77794665-77794684 Msa1078800:CDS 35.0%
! TCTGAGATTCGCAAAGGATA+AGG - chr7_2:77793141-77793160 Msa1078800:three_prime_UTR 40.0%
GAGGATGATAAAGTTTGGGT+TGG + chr7_2:77793287-77793306 None:intergenic 40.0%
! TTGAGATTGATCGTCCCTTT+TGG + chr7_2:77793351-77793370 None:intergenic 40.0%
CAAAGAAACGCCGATAACAA+TGG - chr7_2:77793368-77793387 Msa1078800:CDS 40.0%
! ATGCCGATTACTTTCTAGGA+AGG + chr7_2:77793837-77793856 None:intergenic 40.0%
! GATCATGCCGATTACTTTCT+AGG + chr7_2:77793841-77793860 None:intergenic 40.0%
! TGAGGGTGTAGGATTCAAAT+TGG - chr7_2:77793883-77793902 Msa1078800:intron 40.0%
TCCGGTTTCAAGAATCTTCT+TGG - chr7_2:77793987-77794006 Msa1078800:intron 40.0%
! CAACACCGACTATGTGAATT+TGG + chr7_2:77794156-77794175 None:intergenic 40.0%
AACTCTTCGTTCAATGTCTC+AGG - chr7_2:77794256-77794275 Msa1078800:intron 40.0%
ATGGTCAAACTTCAAGAAGC+AGG - chr7_2:77794309-77794328 Msa1078800:intron 40.0%
TGGTCAAACTTCAAGAAGCA+GGG - chr7_2:77794310-77794329 Msa1078800:intron 40.0%
AATATGTGAGCTGGAATCCT+AGG - chr7_2:77794368-77794387 Msa1078800:intron 40.0%
GGATCAACTTCTTCAGAAAG+TGG + chr7_2:77794406-77794425 None:intergenic 40.0%
!! TAGGACTAGTCCAGAATTTG+AGG + chr7_2:77794453-77794472 None:intergenic 40.0%
!! AGTCCTACTTTTACTCTTGG+TGG - chr7_2:77794466-77794485 Msa1078800:intron 40.0%
!! GTCCTACTTTTACTCTTGGT+GGG - chr7_2:77794467-77794486 Msa1078800:intron 40.0%
!! TCCTACTTTTACTCTTGGTG+GGG - chr7_2:77794468-77794487 Msa1078800:intron 40.0%
! CTTGTTGATTGGTGCTTGAA+GGG + chr7_2:77794527-77794546 None:intergenic 40.0%
! ACTTGTTGATTGGTGCTTGA+AGG + chr7_2:77794528-77794547 None:intergenic 40.0%
AGTGGAAGAAGCAATAGAAC+AGG + chr7_2:77794639-77794658 None:intergenic 40.0%
CGAGGACATAAATTGTGTCA+AGG + chr7_2:77794667-77794686 None:intergenic 40.0%
! TCTGAGATTCGCAAAGGATA+AGG - chr7_2:77793141-77793160 Msa1078800:three_prime_UTR 40.0%
GAGGATGATAAAGTTTGGGT+TGG + chr7_2:77793287-77793306 None:intergenic 40.0%
! TTGAGATTGATCGTCCCTTT+TGG + chr7_2:77793351-77793370 None:intergenic 40.0%
CAAAGAAACGCCGATAACAA+TGG - chr7_2:77793368-77793387 Msa1078800:CDS 40.0%
! ATGCCGATTACTTTCTAGGA+AGG + chr7_2:77793837-77793856 None:intergenic 40.0%
! GATCATGCCGATTACTTTCT+AGG + chr7_2:77793841-77793860 None:intergenic 40.0%
! TGAGGGTGTAGGATTCAAAT+TGG - chr7_2:77793883-77793902 Msa1078800:intron 40.0%
TCCGGTTTCAAGAATCTTCT+TGG - chr7_2:77793987-77794006 Msa1078800:intron 40.0%
! CAACACCGACTATGTGAATT+TGG + chr7_2:77794156-77794175 None:intergenic 40.0%
AACTCTTCGTTCAATGTCTC+AGG - chr7_2:77794256-77794275 Msa1078800:intron 40.0%
ATGGTCAAACTTCAAGAAGC+AGG - chr7_2:77794309-77794328 Msa1078800:intron 40.0%
TGGTCAAACTTCAAGAAGCA+GGG - chr7_2:77794310-77794329 Msa1078800:intron 40.0%
AATATGTGAGCTGGAATCCT+AGG - chr7_2:77794368-77794387 Msa1078800:intron 40.0%
GGATCAACTTCTTCAGAAAG+TGG + chr7_2:77794406-77794425 None:intergenic 40.0%
!! TAGGACTAGTCCAGAATTTG+AGG + chr7_2:77794453-77794472 None:intergenic 40.0%
!! AGTCCTACTTTTACTCTTGG+TGG - chr7_2:77794466-77794485 Msa1078800:intron 40.0%
!! GTCCTACTTTTACTCTTGGT+GGG - chr7_2:77794467-77794486 Msa1078800:intron 40.0%
!! TCCTACTTTTACTCTTGGTG+GGG - chr7_2:77794468-77794487 Msa1078800:intron 40.0%
! CTTGTTGATTGGTGCTTGAA+GGG + chr7_2:77794527-77794546 None:intergenic 40.0%
! ACTTGTTGATTGGTGCTTGA+AGG + chr7_2:77794528-77794547 None:intergenic 40.0%
AGTGGAAGAAGCAATAGAAC+AGG + chr7_2:77794639-77794658 None:intergenic 40.0%
CGAGGACATAAATTGTGTCA+AGG + chr7_2:77794667-77794686 None:intergenic 40.0%
!! GGTTGGTGAAGAGAAACGAT+GGG + chr7_2:77793270-77793289 None:intergenic 45.0%
!! ATCATCAACGGATTGGGACA+AGG - chr7_2:77794285-77794304 Msa1078800:intron 45.0%
AGTGGAAAATCTGAACGCCT+AGG + chr7_2:77794388-77794407 None:intergenic 45.0%
AATTGTGTCAAGGACTCGAG+TGG + chr7_2:77794657-77794676 None:intergenic 45.0%
!! GGTTGGTGAAGAGAAACGAT+GGG + chr7_2:77793270-77793289 None:intergenic 45.0%
!! ATCATCAACGGATTGGGACA+AGG - chr7_2:77794285-77794304 Msa1078800:intron 45.0%
AGTGGAAAATCTGAACGCCT+AGG + chr7_2:77794388-77794407 None:intergenic 45.0%
AATTGTGTCAAGGACTCGAG+TGG + chr7_2:77794657-77794676 None:intergenic 45.0%
!! GGGTTGGTGAAGAGAAACGA+TGG + chr7_2:77793271-77793290 None:intergenic 50.0%
! TGCAGAGGTTGACTTCAGTG+AGG - chr7_2:77793865-77793884 Msa1078800:intron 50.0%
! GCAGAGGTTGACTTCAGTGA+GGG - chr7_2:77793866-77793885 Msa1078800:intron 50.0%
! GTTGACTTCAGTGAGGGTGT+AGG - chr7_2:77793872-77793891 Msa1078800:intron 50.0%
GCCCCACCAAGAGTAAAAGT+AGG + chr7_2:77794472-77794491 None:intergenic 50.0%
!! GGGTTGGTGAAGAGAAACGA+TGG + chr7_2:77793271-77793290 None:intergenic 50.0%
! TGCAGAGGTTGACTTCAGTG+AGG - chr7_2:77793865-77793884 Msa1078800:intron 50.0%
! GCAGAGGTTGACTTCAGTGA+GGG - chr7_2:77793866-77793885 Msa1078800:intron 50.0%
! GTTGACTTCAGTGAGGGTGT+AGG - chr7_2:77793872-77793891 Msa1078800:intron 50.0%
GCCCCACCAAGAGTAAAAGT+AGG + chr7_2:77794472-77794491 None:intergenic 50.0%
AGAAGCTCCAGTTGAGCCGA+AGG - chr7_2:77793165-77793184 Msa1078800:three_prime_UTR 55.0%
CGTTCTTCCTTCGGCTCAAC+TGG + chr7_2:77793175-77793194 None:intergenic 55.0%
TCGGCATGATCATCGTGCAG+AGG - chr7_2:77793850-77793869 Msa1078800:intron 55.0%
!! CAACGGATTGGGACAAGGCA+TGG - chr7_2:77794290-77794309 Msa1078800:intron 55.0%
AGAAGCTCCAGTTGAGCCGA+AGG - chr7_2:77793165-77793184 Msa1078800:three_prime_UTR 55.0%
CGTTCTTCCTTCGGCTCAAC+TGG + chr7_2:77793175-77793194 None:intergenic 55.0%
TCGGCATGATCATCGTGCAG+AGG - chr7_2:77793850-77793869 Msa1078800:intron 55.0%
!! CAACGGATTGGGACAAGGCA+TGG - chr7_2:77794290-77794309 Msa1078800:intron 55.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 77793128 77794782 77793128 ID=Msa1078800;Name=Msa1078800
chr7_2 mRNA 77793128 77794782 77793128 ID=Msa1078800-mRNA-1;Parent=Msa1078800;Name=Msa1078800-mRNA-1;_AED=0.12;_eAED=0.12;_QI=96|1|1|1|0|0|2|233|145
chr7_2 exon 77793128 77793632 77793128 ID=Msa1078800-mRNA-1:exon:19272;Parent=Msa1078800-mRNA-1
chr7_2 exon 77794521 77794782 77794521 ID=Msa1078800-mRNA-1:exon:19271;Parent=Msa1078800-mRNA-1
chr7_2 five_prime_UTR 77794687 77794782 77794687 ID=Msa1078800-mRNA-1:five_prime_utr;Parent=Msa1078800-mRNA-1
chr7_2 CDS 77794521 77794686 77794521 ID=Msa1078800-mRNA-1:cds;Parent=Msa1078800-mRNA-1
chr7_2 CDS 77793361 77793632 77793361 ID=Msa1078800-mRNA-1:cds;Parent=Msa1078800-mRNA-1
chr7_2 three_prime_UTR 77793128 77793360 77793128 ID=Msa1078800-mRNA-1:three_prime_utr;Parent=Msa1078800-mRNA-1
Gene Sequence

>Msa1078800

ATGGATATTCATAGACACATTTCAATACCCACAACTTTTATATCCCATCGTTTCTCTTCACCAACCCAAACTTTATCATCCTCTTCTTTCCATTCCTATTTCCCCTTCAAATTTGTAGTATGTTCCAAAAGGGACGATCAATCTCAAAGAAACGCCGATAACAATGGTGATAAATCATCAACGGATTGGGACAAGGCATGGTCAAACTTCAAGAAGCAGGGAAAAAAAACTCTCTTCTCAAATTTTTCTCCAAATAAATATGTGAGCTGGAATCCTAGGCGTTCAGATTTTCCACTTTCTGAAGAAGTTGATCCTATCAAGAGAACAGAAAGATCAAACCTCAAATTCTGGACTAGTCCTACTTTTACTCTTGGTGGGGCACTTATTATTCTCATAGTTCTTTTGTTGTACACCCTTCAAGCACCAATCAACAAGTAA

Protein sequence

>Msa1078800

MDIHRHISIPTTFISHRFSSPTQTLSSSSFHSYFPFKFVVCSKRDDQSQRNADNNGDKSSTDWDKAWSNFKKQGKKTLFSNFSPNKYVSWNPRRSDFPLSEEVDPIKRTERSNLKFWTSPTFTLGGALIILIVLLLYTLQAPINK*