AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1207780


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1207780 MtrunA17_Chr4g0056591 74.390 246 62 1 2 246 456 701 1.57e-127 379
Msa1207780 MtrunA17_Chr4g0056581 96.032 126 5 0 1 126 1 126 6.14e-83 244
Msa1207780 MtrunA17_Chr7g0231931 37.398 246 150 3 3 245 427 671 2.59e-51 177
Msa1207780 MtrunA17_Chr2g0286711 38.767 227 135 3 3 226 421 646 1.95e-47 167
Msa1207780 MtrunA17_Chr4g0056571 80.000 70 14 0 177 246 1 70 4.51e-34 119
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1207780 AT1G62750.1 71.951 246 68 1 2 246 460 705 4.47e-122 365
Msa1207780 AT1G45332.2 40.244 246 143 3 3 245 250 494 2.31e-55 186
Msa1207780 AT1G45332.1 40.244 246 143 3 3 245 430 674 1.66e-54 187
Msa1207780 AT2G45030.1 40.244 246 143 3 3 245 430 674 2.18e-54 186
Msa1207780 AT1G56070.3 25.926 297 163 10 2 245 450 742 4.55e-13 68.9
Msa1207780 AT1G56070.2 25.926 297 163 10 2 245 450 742 4.55e-13 68.9
Msa1207780 AT1G56070.1 25.926 297 163 10 2 245 450 742 4.55e-13 68.9
Msa1207780 AT3G22980.1 35.345 116 72 3 2 114 502 617 2.64e-11 63.5
Msa1207780 AT3G22980.3 35.345 116 72 3 2 114 502 617 2.64e-11 63.5
Msa1207780 AT3G22980.2 35.345 116 72 3 2 114 502 617 2.64e-11 63.5

Find 66 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGTCTCAAAAGAGAATTTA+AGG 0.150654 8_1:+65535316 Msa1207780:CDS
CTCCATGTCAGCTTTAGTTT+TGG 0.200742 8_1:-65535171 None:intergenic
ACAATTTCAACTTTCATTAT+AGG 0.216886 8_1:-65536112 None:intergenic
TGGTGTTCTAGCTGGCTTTC+CGG 0.251170 8_1:+65535958 Msa1207780:CDS
GTTACTCCTGAAGAACATTT+AGG 0.259112 8_1:+65536133 Msa1207780:CDS
ACATCTCCTAAATGTTCTTC+AGG 0.320044 8_1:-65536139 None:intergenic
CTTCCAGAAGAATTCATTAC+TGG 0.320246 8_1:+65535902 Msa1207780:CDS
TCAATTGCAATCTTAATAAC+AGG 0.329367 8_1:-65535146 None:intergenic
TGCTTTCCCTATAGTTTACT+TGG 0.338998 8_1:-65535739 None:intergenic
ATGGATATTGTTACTCTTGT+TGG 0.342618 8_1:+65535044 Msa1207780:CDS
ACCCCAGTAATGAATTCTTC+TGG 0.342666 8_1:-65535905 None:intergenic
GCAATCTTAATAACAGGAAC+AGG 0.342806 8_1:-65535140 None:intergenic
TCATCCGGTCCTCTTTATCT+TGG 0.393378 8_1:-65535250 None:intergenic
CTAGCTGGCTTTCCGGTTGT+TGG 0.396399 8_1:+65535965 Msa1207780:CDS
AAGCTTCTCTCGCTGCCAAC+TGG 0.397246 8_1:-65536048 None:intergenic
CATCCGGTCCTCTTTATCTT+GGG 0.397382 8_1:-65535249 None:intergenic
TCAAATTTGTATCCACTACT+TGG 0.404077 8_1:-65535857 None:intergenic
AGGTTCAAGCATTAACGGTT+TGG 0.428422 8_1:-65536092 None:intergenic
GTATCCACTACTTGGGTCCA+TGG 0.429904 8_1:-65535849 None:intergenic
GTCCATGGGTTCAAAATGTA+TGG 0.430865 8_1:-65535834 None:intergenic
CGGATGATCATTCAAGGAAC+AGG 0.441895 8_1:+65535266 Msa1207780:CDS
ATTATAGGTTCAAGCATTAA+CGG 0.444891 8_1:-65536097 None:intergenic
ATCAAGCACGAATGGACCCT+TGG 0.445699 8_1:-65535105 None:intergenic
TAAAGCTGACATGGAGAAGA+TGG 0.456923 8_1:+65535178 Msa1207780:CDS
TCTTGGGATAAGCGGAAAGA+AGG 0.462771 8_1:-65535233 None:intergenic
TCAAGCACGAATGGACCCTT+GGG 0.462799 8_1:-65535104 None:intergenic
GCTTTCCCTATAGTTTACTT+GGG 0.467404 8_1:-65535738 None:intergenic
TATGTGTTCAATAAACAATC+AGG 0.472517 8_1:+65535785 Msa1207780:CDS
ATGAGCAATGGTGTTCTAGC+TGG 0.477966 8_1:+65535950 Msa1207780:CDS
CCGCTTATCCCAAGATAAAG+AGG 0.478110 8_1:+65535241 Msa1207780:CDS
CTGTTCCTTGAATGATCATC+CGG 0.480081 8_1:-65535265 None:intergenic
TATCCACTACTTGGGTCCAT+GGG 0.482451 8_1:-65535848 None:intergenic
ATACCTCACTTCTGTGACTT+CGG 0.483194 8_1:-65535765 None:intergenic
TCCATTCGTGCTTGATCAGA+TGG 0.492171 8_1:+65535112 Msa1207780:CDS
TGAGACGTTGTGTGACCCCA+AGG 0.519530 8_1:+65535088 Msa1207780:CDS
GAGGACCGGATGATCATTCA+AGG 0.522038 8_1:+65535260 Msa1207780:CDS
CAAATTTGTATCCACTACTT+GGG 0.533919 8_1:-65535856 None:intergenic
ATTGCGCGTACACCAACAAC+CGG 0.534986 8_1:-65535977 None:intergenic
TTCCAGAAGAATTCATTACT+GGG 0.551889 8_1:+65535903 Msa1207780:CDS
TCCATCTGATCAAGCACGAA+TGG 0.552084 8_1:-65535113 None:intergenic
GACATGGAGAAGATGGAAGC+TGG 0.555973 8_1:+65535185 Msa1207780:CDS
ATGCAGGTAGAAGCTAATGT+TGG 0.557514 8_1:+65535710 Msa1207780:intron
CTTTCCCTATAGTTTACTTG+GGG 0.575513 8_1:-65535737 None:intergenic
TGGTGTACGCGCAATACTTG+TGG 0.576046 8_1:+65535985 Msa1207780:CDS
GAACCCATGGACCCAAGTAG+TGG 0.580505 8_1:+65535845 Msa1207780:CDS
AAATGTGAGGGTATTCCAGT+TGG 0.582925 8_1:+65536033 Msa1207780:CDS
CCTCTTTATCTTGGGATAAG+CGG 0.587821 8_1:-65535241 None:intergenic
GGTTTGAAAGATACTATAGC+CGG 0.593470 8_1:+65535065 Msa1207780:CDS
CTTGGGATAAGCGGAAAGAA+GGG 0.595180 8_1:-65535232 None:intergenic
ACCCAAAACTAAAGCTGACA+TGG 0.611458 8_1:+65535169 Msa1207780:CDS
GGATGGTAATTACCATGATG+TGG 0.612641 8_1:+65536006 Msa1207780:CDS
GGGGTCACACAACGTCTCAC+CGG 0.615808 8_1:-65535084 None:intergenic
TATCCCAAGATAAAGAGGAC+CGG 0.617364 8_1:+65535246 Msa1207780:CDS
GAGACGTTGTGTGACCCCAA+GGG 0.619509 8_1:+65535089 Msa1207780:CDS
TCACATTTGAATCCACATCA+TGG 0.622810 8_1:-65536018 None:intergenic
TGGTTACATCTGCAAATTGA+CGG 0.633657 8_1:-65535814 None:intergenic
TGGTTTAATCAAGCTTGCAG+AGG 0.635811 8_1:+65535205 Msa1207780:CDS
TCCAGAAGAATTCATTACTG+GGG 0.636103 8_1:+65535904 Msa1207780:CDS
CAATCTTAATAACAGGAACA+GGG 0.636579 8_1:-65535139 None:intergenic
GTGTTCAATAAACAATCAGG+TGG 0.650549 8_1:+65535788 Msa1207780:CDS
TTGGAAGAGTGCATGAGCAA+TGG 0.663387 8_1:+65535938 Msa1207780:CDS
TGATGTGGATTCAAATGTGA+GGG 0.666011 8_1:+65536021 Msa1207780:CDS
TTTCCGAAGTCACAGAAGTG+AGG 0.671983 8_1:+65535762 Msa1207780:CDS
ATGATGTGGATTCAAATGTG+AGG 0.710458 8_1:+65536020 Msa1207780:CDS
GTACGCGCAATACTTGTGGA+TGG 0.718786 8_1:+65535989 Msa1207780:CDS
CAAGCACGAATGGACCCTTG+GGG 0.723589 8_1:-65535103 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGGAAGTAATCATATAATA+GGG - chr8_1:65535585-65535604 None:intergenic 20.0%
!! ACAATTTCAACTTTCATTAT+AGG - chr8_1:65536115-65536134 None:intergenic 20.0%
!! AAGGAAGTAATCATATAATA+GGG - chr8_1:65535585-65535604 None:intergenic 20.0%
!! ACAATTTCAACTTTCATTAT+AGG - chr8_1:65536115-65536134 None:intergenic 20.0%
! TCAATTGCAATCTTAATAAC+AGG - chr8_1:65535149-65535168 None:intergenic 25.0%
!! ATTTTCTGTATCTGTTAACA+TGG + chr8_1:65535365-65535384 Msa1207780:intron 25.0%
! AACAAATAATCATCCTTGAT+CGG - chr8_1:65535542-65535561 None:intergenic 25.0%
! AGGAAGTAATCATATAATAG+GGG - chr8_1:65535584-65535603 None:intergenic 25.0%
! CAAGGAAGTAATCATATAAT+AGG - chr8_1:65535586-65535605 None:intergenic 25.0%
! TACATAAAACTGATGAAGAT+CGG - chr8_1:65535628-65535647 None:intergenic 25.0%
!! TATCTAATGTTTGTTAATGC+AGG + chr8_1:65535694-65535713 Msa1207780:intron 25.0%
! TATGTGTTCAATAAACAATC+AGG + chr8_1:65535785-65535804 Msa1207780:CDS 25.0%
! ATTATAGGTTCAAGCATTAA+CGG - chr8_1:65536100-65536119 None:intergenic 25.0%
! TCAATTGCAATCTTAATAAC+AGG - chr8_1:65535149-65535168 None:intergenic 25.0%
!! ATTTTCTGTATCTGTTAACA+TGG + chr8_1:65535365-65535384 Msa1207780:intron 25.0%
! AACAAATAATCATCCTTGAT+CGG - chr8_1:65535542-65535561 None:intergenic 25.0%
! AGGAAGTAATCATATAATAG+GGG - chr8_1:65535584-65535603 None:intergenic 25.0%
! CAAGGAAGTAATCATATAAT+AGG - chr8_1:65535586-65535605 None:intergenic 25.0%
! TACATAAAACTGATGAAGAT+CGG - chr8_1:65535628-65535647 None:intergenic 25.0%
!! TATCTAATGTTTGTTAATGC+AGG + chr8_1:65535694-65535713 Msa1207780:intron 25.0%
! TATGTGTTCAATAAACAATC+AGG + chr8_1:65535785-65535804 Msa1207780:CDS 25.0%
! ATTATAGGTTCAAGCATTAA+CGG - chr8_1:65536100-65536119 None:intergenic 25.0%
ATGGATATTGTTACTCTTGT+TGG + chr8_1:65535044-65535063 Msa1207780:CDS 30.0%
CAATCTTAATAACAGGAACA+GGG - chr8_1:65535142-65535161 None:intergenic 30.0%
TCGTCTCAAAAGAGAATTTA+AGG + chr8_1:65535316-65535335 Msa1207780:CDS 30.0%
! CCTTACTTCTTGTTATGATT+TGG - chr8_1:65535439-65535458 None:intergenic 30.0%
CCAAATCATAACAAGAAGTA+AGG + chr8_1:65535436-65535455 Msa1207780:intron 30.0%
TCATGAAAAAAATGCTTACG+AGG + chr8_1:65535479-65535498 Msa1207780:intron 30.0%
ACAGACATGGATTTATTCAA+GGG - chr8_1:65535516-65535535 None:intergenic 30.0%
AAGAAAAAGGAATCATCTCA+AGG - chr8_1:65535604-65535623 None:intergenic 30.0%
! TTTTCCCCAAGTAAACTATA+GGG + chr8_1:65535733-65535752 Msa1207780:CDS 30.0%
CAAATTTGTATCCACTACTT+GGG - chr8_1:65535859-65535878 None:intergenic 30.0%
TCAAATTTGTATCCACTACT+TGG - chr8_1:65535860-65535879 None:intergenic 30.0%
TTCCAGAAGAATTCATTACT+GGG + chr8_1:65535903-65535922 Msa1207780:CDS 30.0%
! TTCATTACTGGGGTTTTTAA+AGG + chr8_1:65535914-65535933 Msa1207780:CDS 30.0%
ATGGATATTGTTACTCTTGT+TGG + chr8_1:65535044-65535063 Msa1207780:CDS 30.0%
CAATCTTAATAACAGGAACA+GGG - chr8_1:65535142-65535161 None:intergenic 30.0%
TCGTCTCAAAAGAGAATTTA+AGG + chr8_1:65535316-65535335 Msa1207780:CDS 30.0%
! CCTTACTTCTTGTTATGATT+TGG - chr8_1:65535439-65535458 None:intergenic 30.0%
CCAAATCATAACAAGAAGTA+AGG + chr8_1:65535436-65535455 Msa1207780:intron 30.0%
TCATGAAAAAAATGCTTACG+AGG + chr8_1:65535479-65535498 Msa1207780:intron 30.0%
ACAGACATGGATTTATTCAA+GGG - chr8_1:65535516-65535535 None:intergenic 30.0%
AAGAAAAAGGAATCATCTCA+AGG - chr8_1:65535604-65535623 None:intergenic 30.0%
! TTTTCCCCAAGTAAACTATA+GGG + chr8_1:65535733-65535752 Msa1207780:CDS 30.0%
CAAATTTGTATCCACTACTT+GGG - chr8_1:65535859-65535878 None:intergenic 30.0%
TCAAATTTGTATCCACTACT+TGG - chr8_1:65535860-65535879 None:intergenic 30.0%
TTCCAGAAGAATTCATTACT+GGG + chr8_1:65535903-65535922 Msa1207780:CDS 30.0%
! TTCATTACTGGGGTTTTTAA+AGG + chr8_1:65535914-65535933 Msa1207780:CDS 30.0%
GGTTTGAAAGATACTATAGC+CGG + chr8_1:65535065-65535084 Msa1207780:CDS 35.0%
GCAATCTTAATAACAGGAAC+AGG - chr8_1:65535143-65535162 None:intergenic 35.0%
!!! TCCATGTCAGCTTTAGTTTT+GGG - chr8_1:65535173-65535192 None:intergenic 35.0%
!!! TCTTTTGAGACGATCAACAA+TGG - chr8_1:65535309-65535328 None:intergenic 35.0%
GACAGACATGGATTTATTCA+AGG - chr8_1:65535517-65535536 None:intergenic 35.0%
GATGAAGATCGGAAAGAAAA+AGG - chr8_1:65535617-65535636 None:intergenic 35.0%
! GTTTTCCCCAAGTAAACTAT+AGG + chr8_1:65535732-65535751 Msa1207780:CDS 35.0%
CTTTCCCTATAGTTTACTTG+GGG - chr8_1:65535740-65535759 None:intergenic 35.0%
GCTTTCCCTATAGTTTACTT+GGG - chr8_1:65535741-65535760 None:intergenic 35.0%
TGCTTTCCCTATAGTTTACT+TGG - chr8_1:65535742-65535761 None:intergenic 35.0%
GTGTTCAATAAACAATCAGG+TGG + chr8_1:65535788-65535807 Msa1207780:CDS 35.0%
TGGTTACATCTGCAAATTGA+CGG - chr8_1:65535817-65535836 None:intergenic 35.0%
! AACCATACATTTTGAACCCA+TGG + chr8_1:65535832-65535851 Msa1207780:CDS 35.0%
CTTCCAGAAGAATTCATTAC+TGG + chr8_1:65535902-65535921 Msa1207780:CDS 35.0%
TCCAGAAGAATTCATTACTG+GGG + chr8_1:65535904-65535923 Msa1207780:CDS 35.0%
!! TACTGGGGTTTTTAAAGGAT+TGG + chr8_1:65535919-65535938 Msa1207780:CDS 35.0%
TCACATTTGAATCCACATCA+TGG - chr8_1:65536021-65536040 None:intergenic 35.0%
ATGATGTGGATTCAAATGTG+AGG + chr8_1:65536020-65536039 Msa1207780:CDS 35.0%
TGATGTGGATTCAAATGTGA+GGG + chr8_1:65536021-65536040 Msa1207780:CDS 35.0%
GTTACTCCTGAAGAACATTT+AGG + chr8_1:65536133-65536152 Msa1207780:CDS 35.0%
GGTTTGAAAGATACTATAGC+CGG + chr8_1:65535065-65535084 Msa1207780:CDS 35.0%
GCAATCTTAATAACAGGAAC+AGG - chr8_1:65535143-65535162 None:intergenic 35.0%
!!! TCCATGTCAGCTTTAGTTTT+GGG - chr8_1:65535173-65535192 None:intergenic 35.0%
!!! TCTTTTGAGACGATCAACAA+TGG - chr8_1:65535309-65535328 None:intergenic 35.0%
GACAGACATGGATTTATTCA+AGG - chr8_1:65535517-65535536 None:intergenic 35.0%
GATGAAGATCGGAAAGAAAA+AGG - chr8_1:65535617-65535636 None:intergenic 35.0%
! GTTTTCCCCAAGTAAACTAT+AGG + chr8_1:65535732-65535751 Msa1207780:CDS 35.0%
CTTTCCCTATAGTTTACTTG+GGG - chr8_1:65535740-65535759 None:intergenic 35.0%
GCTTTCCCTATAGTTTACTT+GGG - chr8_1:65535741-65535760 None:intergenic 35.0%
TGCTTTCCCTATAGTTTACT+TGG - chr8_1:65535742-65535761 None:intergenic 35.0%
GTGTTCAATAAACAATCAGG+TGG + chr8_1:65535788-65535807 Msa1207780:CDS 35.0%
TGGTTACATCTGCAAATTGA+CGG - chr8_1:65535817-65535836 None:intergenic 35.0%
! AACCATACATTTTGAACCCA+TGG + chr8_1:65535832-65535851 Msa1207780:CDS 35.0%
CTTCCAGAAGAATTCATTAC+TGG + chr8_1:65535902-65535921 Msa1207780:CDS 35.0%
TCCAGAAGAATTCATTACTG+GGG + chr8_1:65535904-65535923 Msa1207780:CDS 35.0%
!! TACTGGGGTTTTTAAAGGAT+TGG + chr8_1:65535919-65535938 Msa1207780:CDS 35.0%
TCACATTTGAATCCACATCA+TGG - chr8_1:65536021-65536040 None:intergenic 35.0%
ATGATGTGGATTCAAATGTG+AGG + chr8_1:65536020-65536039 Msa1207780:CDS 35.0%
TGATGTGGATTCAAATGTGA+GGG + chr8_1:65536021-65536040 Msa1207780:CDS 35.0%
GTTACTCCTGAAGAACATTT+AGG + chr8_1:65536133-65536152 Msa1207780:CDS 35.0%
ACCCAAAACTAAAGCTGACA+TGG + chr8_1:65535169-65535188 Msa1207780:CDS 40.0%
!! CTCCATGTCAGCTTTAGTTT+TGG - chr8_1:65535174-65535193 None:intergenic 40.0%
TAAAGCTGACATGGAGAAGA+TGG + chr8_1:65535178-65535197 Msa1207780:CDS 40.0%
TGGTTTAATCAAGCTTGCAG+AGG + chr8_1:65535205-65535224 Msa1207780:CDS 40.0%
CCTCTTTATCTTGGGATAAG+CGG - chr8_1:65535244-65535263 None:intergenic 40.0%
TATCCCAAGATAAAGAGGAC+CGG + chr8_1:65535246-65535265 Msa1207780:CDS 40.0%
CTGTTCCTTGAATGATCATC+CGG - chr8_1:65535268-65535287 None:intergenic 40.0%
ATGCAGGTAGAAGCTAATGT+TGG + chr8_1:65535710-65535729 Msa1207780:intron 40.0%
ATACCTCACTTCTGTGACTT+CGG - chr8_1:65535768-65535787 None:intergenic 40.0%
GTCCATGGGTTCAAAATGTA+TGG - chr8_1:65535837-65535856 None:intergenic 40.0%
ACCCCAGTAATGAATTCTTC+TGG - chr8_1:65535908-65535927 None:intergenic 40.0%
GGATGGTAATTACCATGATG+TGG + chr8_1:65536006-65536025 Msa1207780:CDS 40.0%
!! AAATGTGAGGGTATTCCAGT+TGG + chr8_1:65536033-65536052 Msa1207780:CDS 40.0%
AGGTTCAAGCATTAACGGTT+TGG - chr8_1:65536095-65536114 None:intergenic 40.0%
ACCCAAAACTAAAGCTGACA+TGG + chr8_1:65535169-65535188 Msa1207780:CDS 40.0%
!! CTCCATGTCAGCTTTAGTTT+TGG - chr8_1:65535174-65535193 None:intergenic 40.0%
TAAAGCTGACATGGAGAAGA+TGG + chr8_1:65535178-65535197 Msa1207780:CDS 40.0%
TGGTTTAATCAAGCTTGCAG+AGG + chr8_1:65535205-65535224 Msa1207780:CDS 40.0%
CCTCTTTATCTTGGGATAAG+CGG - chr8_1:65535244-65535263 None:intergenic 40.0%
TATCCCAAGATAAAGAGGAC+CGG + chr8_1:65535246-65535265 Msa1207780:CDS 40.0%
CTGTTCCTTGAATGATCATC+CGG - chr8_1:65535268-65535287 None:intergenic 40.0%
ATGCAGGTAGAAGCTAATGT+TGG + chr8_1:65535710-65535729 Msa1207780:intron 40.0%
ATACCTCACTTCTGTGACTT+CGG - chr8_1:65535768-65535787 None:intergenic 40.0%
GTCCATGGGTTCAAAATGTA+TGG - chr8_1:65535837-65535856 None:intergenic 40.0%
ACCCCAGTAATGAATTCTTC+TGG - chr8_1:65535908-65535927 None:intergenic 40.0%
GGATGGTAATTACCATGATG+TGG + chr8_1:65536006-65536025 Msa1207780:CDS 40.0%
!! AAATGTGAGGGTATTCCAGT+TGG + chr8_1:65536033-65536052 Msa1207780:CDS 40.0%
AGGTTCAAGCATTAACGGTT+TGG - chr8_1:65536095-65536114 None:intergenic 40.0%
TCCATTCGTGCTTGATCAGA+TGG + chr8_1:65535112-65535131 Msa1207780:CDS 45.0%
TCCATCTGATCAAGCACGAA+TGG - chr8_1:65535116-65535135 None:intergenic 45.0%
CTTGGGATAAGCGGAAAGAA+GGG - chr8_1:65535235-65535254 None:intergenic 45.0%
TCTTGGGATAAGCGGAAAGA+AGG - chr8_1:65535236-65535255 None:intergenic 45.0%
CCGCTTATCCCAAGATAAAG+AGG + chr8_1:65535241-65535260 Msa1207780:CDS 45.0%
CATCCGGTCCTCTTTATCTT+GGG - chr8_1:65535252-65535271 None:intergenic 45.0%
TCATCCGGTCCTCTTTATCT+TGG - chr8_1:65535253-65535272 None:intergenic 45.0%
CGGATGATCATTCAAGGAAC+AGG + chr8_1:65535266-65535285 Msa1207780:CDS 45.0%
TTTCCGAAGTCACAGAAGTG+AGG + chr8_1:65535762-65535781 Msa1207780:CDS 45.0%
TATCCACTACTTGGGTCCAT+GGG - chr8_1:65535851-65535870 None:intergenic 45.0%
! TTGGAAGAGTGCATGAGCAA+TGG + chr8_1:65535938-65535957 Msa1207780:CDS 45.0%
ATGAGCAATGGTGTTCTAGC+TGG + chr8_1:65535950-65535969 Msa1207780:CDS 45.0%
TCCATTCGTGCTTGATCAGA+TGG + chr8_1:65535112-65535131 Msa1207780:CDS 45.0%
TCCATCTGATCAAGCACGAA+TGG - chr8_1:65535116-65535135 None:intergenic 45.0%
CTTGGGATAAGCGGAAAGAA+GGG - chr8_1:65535235-65535254 None:intergenic 45.0%
TCTTGGGATAAGCGGAAAGA+AGG - chr8_1:65535236-65535255 None:intergenic 45.0%
CCGCTTATCCCAAGATAAAG+AGG + chr8_1:65535241-65535260 Msa1207780:CDS 45.0%
CATCCGGTCCTCTTTATCTT+GGG - chr8_1:65535252-65535271 None:intergenic 45.0%
TCATCCGGTCCTCTTTATCT+TGG - chr8_1:65535253-65535272 None:intergenic 45.0%
CGGATGATCATTCAAGGAAC+AGG + chr8_1:65535266-65535285 Msa1207780:CDS 45.0%
TTTCCGAAGTCACAGAAGTG+AGG + chr8_1:65535762-65535781 Msa1207780:CDS 45.0%
TATCCACTACTTGGGTCCAT+GGG - chr8_1:65535851-65535870 None:intergenic 45.0%
! TTGGAAGAGTGCATGAGCAA+TGG + chr8_1:65535938-65535957 Msa1207780:CDS 45.0%
ATGAGCAATGGTGTTCTAGC+TGG + chr8_1:65535950-65535969 Msa1207780:CDS 45.0%
TCAAGCACGAATGGACCCTT+GGG - chr8_1:65535107-65535126 None:intergenic 50.0%
ATCAAGCACGAATGGACCCT+TGG - chr8_1:65535108-65535127 None:intergenic 50.0%
GACATGGAGAAGATGGAAGC+TGG + chr8_1:65535185-65535204 Msa1207780:CDS 50.0%
GAGGACCGGATGATCATTCA+AGG + chr8_1:65535260-65535279 Msa1207780:CDS 50.0%
CCTTGATCGGATGACAGACA+TGG - chr8_1:65535529-65535548 None:intergenic 50.0%
CCATGTCTGTCATCCGATCA+AGG + chr8_1:65535526-65535545 Msa1207780:intron 50.0%
GTATCCACTACTTGGGTCCA+TGG - chr8_1:65535852-65535871 None:intergenic 50.0%
!! TGGTGTTCTAGCTGGCTTTC+CGG + chr8_1:65535958-65535977 Msa1207780:CDS 50.0%
ATTGCGCGTACACCAACAAC+CGG - chr8_1:65535980-65535999 None:intergenic 50.0%
TGGTGTACGCGCAATACTTG+TGG + chr8_1:65535985-65536004 Msa1207780:CDS 50.0%
GTACGCGCAATACTTGTGGA+TGG + chr8_1:65535989-65536008 Msa1207780:CDS 50.0%
! TGGCAGCGAGAGAAGCTTTT+AGG + chr8_1:65536053-65536072 Msa1207780:CDS 50.0%
! GGCAGCGAGAGAAGCTTTTA+GGG + chr8_1:65536054-65536073 Msa1207780:CDS 50.0%
!! GCGAGAGAAGCTTTTAGGGA+AGG + chr8_1:65536058-65536077 Msa1207780:CDS 50.0%
TCAAGCACGAATGGACCCTT+GGG - chr8_1:65535107-65535126 None:intergenic 50.0%
ATCAAGCACGAATGGACCCT+TGG - chr8_1:65535108-65535127 None:intergenic 50.0%
GACATGGAGAAGATGGAAGC+TGG + chr8_1:65535185-65535204 Msa1207780:CDS 50.0%
GAGGACCGGATGATCATTCA+AGG + chr8_1:65535260-65535279 Msa1207780:CDS 50.0%
CCTTGATCGGATGACAGACA+TGG - chr8_1:65535529-65535548 None:intergenic 50.0%
CCATGTCTGTCATCCGATCA+AGG + chr8_1:65535526-65535545 Msa1207780:intron 50.0%
GTATCCACTACTTGGGTCCA+TGG - chr8_1:65535852-65535871 None:intergenic 50.0%
!! TGGTGTTCTAGCTGGCTTTC+CGG + chr8_1:65535958-65535977 Msa1207780:CDS 50.0%
ATTGCGCGTACACCAACAAC+CGG - chr8_1:65535980-65535999 None:intergenic 50.0%
TGGTGTACGCGCAATACTTG+TGG + chr8_1:65535985-65536004 Msa1207780:CDS 50.0%
GTACGCGCAATACTTGTGGA+TGG + chr8_1:65535989-65536008 Msa1207780:CDS 50.0%
! TGGCAGCGAGAGAAGCTTTT+AGG + chr8_1:65536053-65536072 Msa1207780:CDS 50.0%
! GGCAGCGAGAGAAGCTTTTA+GGG + chr8_1:65536054-65536073 Msa1207780:CDS 50.0%
!! GCGAGAGAAGCTTTTAGGGA+AGG + chr8_1:65536058-65536077 Msa1207780:CDS 50.0%
TGAGACGTTGTGTGACCCCA+AGG + chr8_1:65535088-65535107 Msa1207780:CDS 55.0%
GAGACGTTGTGTGACCCCAA+GGG + chr8_1:65535089-65535108 Msa1207780:CDS 55.0%
CAAGCACGAATGGACCCTTG+GGG - chr8_1:65535106-65535125 None:intergenic 55.0%
GAACCCATGGACCCAAGTAG+TGG + chr8_1:65535845-65535864 Msa1207780:CDS 55.0%
!! CTAGCTGGCTTTCCGGTTGT+TGG + chr8_1:65535965-65535984 Msa1207780:CDS 55.0%
AAGCTTCTCTCGCTGCCAAC+TGG - chr8_1:65536051-65536070 None:intergenic 55.0%
TGAGACGTTGTGTGACCCCA+AGG + chr8_1:65535088-65535107 Msa1207780:CDS 55.0%
GAGACGTTGTGTGACCCCAA+GGG + chr8_1:65535089-65535108 Msa1207780:CDS 55.0%
CAAGCACGAATGGACCCTTG+GGG - chr8_1:65535106-65535125 None:intergenic 55.0%
GAACCCATGGACCCAAGTAG+TGG + chr8_1:65535845-65535864 Msa1207780:CDS 55.0%
!! CTAGCTGGCTTTCCGGTTGT+TGG + chr8_1:65535965-65535984 Msa1207780:CDS 55.0%
AAGCTTCTCTCGCTGCCAAC+TGG - chr8_1:65536051-65536070 None:intergenic 55.0%
GGGGTCACACAACGTCTCAC+CGG - chr8_1:65535087-65535106 None:intergenic 60.0%
GGGGTCACACAACGTCTCAC+CGG - chr8_1:65535087-65535106 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 65535044 65536159 65535044 ID=Msa1207780;Name=Msa1207780
chr8_1 mRNA 65535044 65536159 65535044 ID=Msa1207780-mRNA-1;Parent=Msa1207780;Name=Msa1207780-mRNA-1;_AED=0.41;_eAED=0.41;_QI=0|1|0|1|1|1|2|0|246
chr8_1 exon 65535044 65535337 65535044 ID=Msa1207780-mRNA-1:exon:21514;Parent=Msa1207780-mRNA-1
chr8_1 exon 65535716 65536159 65535716 ID=Msa1207780-mRNA-1:exon:21515;Parent=Msa1207780-mRNA-1
chr8_1 CDS 65535044 65535337 65535044 ID=Msa1207780-mRNA-1:cds;Parent=Msa1207780-mRNA-1
chr8_1 CDS 65535716 65536159 65535716 ID=Msa1207780-mRNA-1:cds;Parent=Msa1207780-mRNA-1
Gene Sequence

>Msa1207780

ATGGATATTGTTACTCTTGTTGGTTTGAAAGATACTATAGCCGGTGAGACGTTGTGTGACCCCAAGGGTCCATTCGTGCTTGATCAGATGGACTTCCCTGTTCCTGTTATTAAGATTGCAATTGAACCCAAAACTAAAGCTGACATGGAGAAGATGGAAGCTGGTTTAATCAAGCTTGCAGAGGAAGACCCTTCTTTCCGCTTATCCCAAGATAAAGAGGACCGGATGATCATTCAAGGAACAGGAGAATTGCATCTTGAAACCATTGTTGATCGTCTCAAAAGAGAATTTAAGGTAGAAGCTAATGTTGGTTTTCCCCAAGTAAACTATAGGGAAAGCATTTCCGAAGTCACAGAAGTGAGGTATGTGTTCAATAAACAATCAGGTGGACACCGTCAATTTGCAGATGTAACCATACATTTTGAACCCATGGACCCAAGTAGTGGATACAAATTTGAGAATAAAATCAAAGAAGAAGCACTTCCAGAAGAATTCATTACTGGGGTTTTTAAAGGATTGGAAGAGTGCATGAGCAATGGTGTTCTAGCTGGCTTTCCGGTTGTTGGTGTACGCGCAATACTTGTGGATGGTAATTACCATGATGTGGATTCAAATGTGAGGGTATTCCAGTTGGCAGCGAGAGAAGCTTTTAGGGAAGGAATGAGAAAAGCCAAACCGTTAATGCTTGAACCTATAATGAAAGTTGAAATTGTTACTCCTGAAGAACATTTAGGAGAT

Protein sequence

>Msa1207780

MDIVTLVGLKDTIAGETLCDPKGPFVLDQMDFPVPVIKIAIEPKTKADMEKMEAGLIKLAEEDPSFRLSQDKEDRMIIQGTGELHLETIVDRLKREFKVEANVGFPQVNYRESISEVTEVRYVFNKQSGGHRQFADVTIHFEPMDPSSGYKFENKIKEEALPEEFITGVFKGLEECMSNGVLAGFPVVGVRAILVDGNYHDVDSNVRVFQLAAREAFREGMRKAKPLMLEPIMKVEIVTPEEHLGD