AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0434320


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0434320 MtrunA17_Chr3g0140531 97.101 276 8 0 1 276 196 471 0.0 551
Msa0434320 MtrunA17_Chr2g0293331 64.364 275 96 1 2 276 185 457 1.96e-136 392
Msa0434320 MtrunA17_Chr1g0146331 65.217 276 93 2 2 276 193 466 5.56e-136 392
Msa0434320 MtrunA17_Chr1g0146391 64.364 275 96 1 2 276 185 457 3.19e-130 377
Msa0434320 MtrunA17_Chr1g0146411 56.934 274 112 2 2 275 205 472 6.24e-106 315
Msa0434320 MtrunA17_Chr3g0140541 56.204 274 118 1 2 275 198 469 2.77e-103 308
Msa0434320 MtrunA17_Chr3g0140761 48.736 277 140 2 2 276 206 482 2.09e-96 291
Msa0434320 MtrunA17_Chr1g0146491 47.292 277 144 2 2 276 196 472 2.57e-94 286
Msa0434320 MtrunA17_Chr8g0384661 49.451 273 133 3 1 272 222 490 7.90e-92 280
Msa0434320 MtrunA17_Chr4g0037201 47.292 277 140 2 2 272 232 508 1.32e-91 280
Msa0434320 MtrunA17_Chr3g0125081 46.324 272 142 2 2 272 207 475 2.01e-87 268
Msa0434320 MtrunA17_Chr1g0206871 48.043 281 135 3 2 272 188 467 4.44e-87 267
Msa0434320 MtrunA17_Chr3g0125091 45.985 274 141 4 2 272 207 476 2.33e-85 263
Msa0434320 MtrunA17_Chr1g0159761 48.207 251 127 2 2 250 200 449 1.23e-84 261
Msa0434320 MtrunA17_Chr3g0125101 45.788 273 143 3 2 272 207 476 5.92e-84 259
Msa0434320 MtrunA17_Chr1g0206851 47.253 273 136 3 2 272 111 377 1.65e-83 255
Msa0434320 MtrunA17_Chr3g0130641 44.322 273 145 3 4 272 204 473 3.81e-81 252
Msa0434320 MtrunA17_Chr1g0206831 47.794 272 134 3 2 271 74 339 5.93e-81 247
Msa0434320 MtrunA17_Chr3g0103211 44.106 263 143 2 1 262 195 454 1.47e-78 245
Msa0434320 MtrunA17_Chr3g0103221 43.173 271 150 2 1 270 202 469 3.26e-77 241
Msa0434320 MtrunA17_Chr1g0206821 52.558 215 101 1 59 272 313 527 9.30e-77 242
Msa0434320 MtrunA17_Chr3g0103231 43.346 263 145 2 1 262 195 454 1.45e-76 240
Msa0434320 MtrunA17_Chr3g0103251 45.494 233 126 1 34 265 138 370 1.47e-75 234
Msa0434320 MtrunA17_Chr5g0447221 43.346 263 143 3 2 262 202 460 4.98e-75 236
Msa0434320 MtrunA17_Chr3g0130651 48.718 273 133 4 1 272 198 464 6.51e-75 236
Msa0434320 MtrunA17_Chr3g0103271 41.154 260 149 3 5 262 202 459 6.02e-66 213
Msa0434320 MtrunA17_Chr5g0447231 37.786 262 159 2 2 262 199 457 7.98e-63 204
Msa0434320 MtrunA17_Chr3g0130661 47.778 180 90 2 94 272 1 177 9.59e-59 185
Msa0434320 MtrunA17_Chr8g0376991 28.571 245 153 5 31 272 210 435 5.13e-23 97.4
Msa0434320 MtrunA17_Chr4g0057851 29.778 225 129 6 17 238 190 388 7.23e-23 97.1
Msa0434320 MtrunA17_Chr6g0458931 25.177 282 180 6 4 272 191 454 2.62e-22 95.9
Msa0434320 MtrunA17_Chr5g0402151 43.878 98 37 1 30 127 185 264 1.19e-20 89.0
Msa0434320 MtrunA17_Chr2g0331721 28.000 200 124 5 40 237 244 425 2.89e-20 90.1
Msa0434320 MtrunA17_Chr1g0184721 26.829 246 159 6 31 272 209 437 1.68e-18 84.7
Msa0434320 MtrunA17_Chr1g0198541 28.571 245 155 5 30 272 210 436 2.06e-17 81.6
Msa0434320 MtrunA17_Chr5g0422741 28.464 267 167 7 8 272 194 438 4.39e-17 80.5
Msa0434320 MtrunA17_Chr6g0459011 26.923 234 151 4 31 262 172 387 8.76e-17 79.3
Msa0434320 MtrunA17_Chr3g0077651 26.667 240 156 4 35 272 247 468 7.58e-16 77.0
Msa0434320 MtrunA17_Chr1g0198531 27.755 245 157 5 30 272 210 436 3.49e-15 75.1
Msa0434320 MtrunA17_Chr3g0122921 24.901 253 149 9 22 272 214 427 1.12e-14 73.6
Msa0434320 MtrunA17_Chr6g0458921 25.614 285 176 6 4 272 163 427 1.93e-14 72.8
Msa0434320 MtrunA17_Chr6g0459021 25.177 282 180 6 4 272 183 446 2.48e-14 72.4
Msa0434320 MtrunA17_Chr2g0328081 24.696 247 161 4 31 272 201 427 2.59e-14 72.4
Msa0434320 MtrunA17_Chr4g0027241 29.665 209 118 8 33 230 232 422 8.33e-14 70.9
Msa0434320 MtrunA17_Chr6g0459031 25.263 285 177 6 4 272 163 427 1.30e-13 70.5
Msa0434320 MtrunA17_Chr7g0230011 25.887 282 178 7 4 272 179 442 1.86e-13 70.1
Msa0434320 MtrunA17_Chr3g0143701 24.583 240 156 6 31 262 276 498 1.37e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0434320 AT1G10010.2 49.265 272 137 1 2 272 201 472 3.23e-101 304
Msa0434320 AT1G10010.1 49.265 272 137 1 2 272 200 471 4.02e-101 303
Msa0434320 AT1G58360.1 48.897 272 138 1 2 272 209 480 1.46e-96 292
Msa0434320 AT5G49630.1 50.000 276 133 4 2 273 205 479 3.72e-95 288
Msa0434320 AT1G44100.1 47.331 281 134 3 2 272 200 476 1.55e-88 271
Msa0434320 AT5G09220.1 46.691 272 140 4 5 272 219 489 2.08e-87 269
Msa0434320 AT5G63850.1 44.689 273 148 2 2 272 191 462 4.84e-85 262
Msa0434320 AT1G77380.1 48.718 273 134 4 4 272 202 472 5.22e-83 257
Msa0434320 AT5G23810.1 42.424 264 146 2 2 262 201 461 2.86e-62 203
Msa0434320 AT5G23810.2 44.898 147 78 1 2 148 201 344 7.49e-35 129
Msa0434320 AT5G40780.3 23.404 282 185 5 4 272 134 397 3.02e-21 92.8
Msa0434320 AT5G40780.2 23.404 282 185 5 4 272 134 397 3.02e-21 92.8
Msa0434320 AT5G40780.1 23.404 282 185 5 4 272 182 445 5.41e-21 92.4
Msa0434320 AT1G24400.1 27.347 245 156 4 31 272 215 440 1.17e-20 91.3
Msa0434320 AT3G01760.1 28.571 231 145 5 40 268 230 442 3.27e-20 90.1
Msa0434320 AT1G61270.1 29.279 222 137 4 40 259 231 434 1.10e-19 88.6
Msa0434320 AT1G48640.1 25.088 283 179 6 4 272 189 452 2.41e-19 87.8
Msa0434320 AT1G67640.1 26.761 284 173 6 4 272 177 440 1.01e-16 80.1
Msa0434320 AT1G25530.1 28.369 282 171 8 4 272 176 439 1.16e-16 79.7
Msa0434320 AT1G71680.1 26.394 269 173 6 7 272 201 447 7.12e-16 77.4
Msa0434320 AT1G08230.3 27.953 254 149 9 31 272 117 348 2.49e-14 72.4
Msa0434320 AT1G08230.4 27.953 254 149 9 31 272 98 329 2.76e-14 72.4
Msa0434320 AT1G08230.6 27.953 254 149 9 31 272 98 329 2.76e-14 72.4
Msa0434320 AT1G08230.5 27.953 254 149 9 31 272 98 329 2.76e-14 72.4
Msa0434320 AT1G08230.2 27.953 254 149 9 31 272 217 448 3.55e-14 72.4
Msa0434320 AT1G71680.2 30.070 143 93 3 7 147 201 338 2.04e-12 67.0

Find 67 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCTTCTGGTTGGTTGCTTT+GGG 0.120510 3_2:-87071559 Msa0434320:CDS
TCAACTTATTTAGACTAATT+TGG 0.167184 3_2:-87071276 Msa0434320:CDS
TGCTTGGAGCATTTGGATTT+TGG 0.172242 3_2:-87071183 Msa0434320:CDS
GCCCTTCTGGTTGGTTGCTT+TGG 0.204187 3_2:-87071560 Msa0434320:CDS
TATCAGAAGAAGACAAAATT+TGG 0.214366 3_2:-87071923 Msa0434320:CDS
TTTCTCATCTGTGTGCTTTC+CGG 0.236560 3_2:+87071703 None:intergenic
GGGAACATCCTCACTGGTTT+TGG 0.241475 3_2:-87071592 Msa0434320:CDS
CTTGCATTGCTTGGAGCATT+TGG 0.251558 3_2:-87071190 Msa0434320:CDS
GAGGACAATATTTGTGATAA+TGG 0.301794 3_2:-87071254 Msa0434320:CDS
GGAGAAAGAACCAGTTTGTT+TGG 0.303768 3_2:-87071966 Msa0434320:CDS
GCGTGTTCAGACGTAATAAT+TGG 0.308562 3_2:+87070822 None:intergenic
ATTTCAACTATACGAAATAT+TGG 0.312065 3_2:+87071379 None:intergenic
GAGGAACACCCAAACAAAAT+TGG 0.316656 3_2:-87071316 Msa0434320:CDS
CCATATGGTAGGAGCATATC+AGG 0.321505 3_2:-87071518 Msa0434320:intron
AATATTTCGTATAGTTGAAA+TGG 0.334003 3_2:-87071377 Msa0434320:CDS
GCTGCAGTTGGTTCCATTCA+TGG 0.337754 3_2:-87071040 Msa0434320:CDS
AACAATAGCCTATTTCAAAA+TGG 0.348097 3_2:-87070976 Msa0434320:exon
AACGAGTTTCTTGCATTGCT+TGG 0.351193 3_2:-87071199 Msa0434320:CDS
TCACTTGGCTATGCTGCATT+TGG 0.358697 3_2:-87071628 Msa0434320:CDS
TACTGTTGTCTATGATATAA+TGG 0.373164 3_2:-87071853 Msa0434320:intron
ATGAGAAAGGCAAATGTGTT+GGG 0.381443 3_2:-87071688 Msa0434320:CDS
TACTTTGGTTCCAAACAAAC+TGG 0.405444 3_2:+87071956 None:intergenic
TGATAACCCTGGTCCTACTT+TGG 0.415696 3_2:+87071941 None:intergenic
ATTCTTACTAATTCCATGAA+TGG 0.418096 3_2:+87071027 None:intergenic
TCTCTAGCAGTTGTGGTGTC+AGG 0.423733 3_2:-87072133 Msa0434320:intron
CCTGATATGCTCCTACCATA+TGG 0.439103 3_2:+87071518 None:intergenic
AACAAACAAGACTCAATAGT+TGG 0.446187 3_2:+87071080 None:intergenic
TTCCTCCTATGTGGTTCACT+TGG 0.448096 3_2:-87071643 Msa0434320:CDS
GCATTTGGTGATCACACTCC+AGG 0.452200 3_2:-87071613 Msa0434320:CDS
ATATTTCGTATAGTTGAAAT+GGG 0.469932 3_2:-87071376 Msa0434320:CDS
GAGAGATGTGCATTTGTATC+GGG 0.470377 3_2:+87071143 None:intergenic
TGAGAGATGTGCATTTGTAT+CGG 0.473205 3_2:+87071142 None:intergenic
AGTTTGTTTGGAACCAAAGT+AGG 0.474169 3_2:-87071954 Msa0434320:CDS
TGTATGCATTATAGTCCATA+TGG 0.479211 3_2:-87071533 Msa0434320:CDS
GCGTTCATCTTTCATAAATG+AGG 0.484830 3_2:-87071335 Msa0434320:CDS
CCTTCTGGTTGGTTGCTTTG+GGG 0.485026 3_2:-87071558 Msa0434320:CDS
GTTTCAGTAGCTGCTGCAGT+TGG 0.487316 3_2:-87071052 Msa0434320:CDS
CTCATCTGTGTGCTTTCCGG+TGG 0.491821 3_2:+87071706 None:intergenic
GCAAGAAACTCGTTGAAGAA+TGG 0.506573 3_2:+87071208 None:intergenic
GATGAGAAAGGCAAATGTGT+TGG 0.517908 3_2:-87071689 Msa0434320:CDS
TTGGAAATTCTAAAATAACT+TGG 0.519238 3_2:+87070841 None:intergenic
TGGACTCTCTCTAGCAGTTG+TGG 0.531790 3_2:-87072140 Msa0434320:CDS
ACTTATTTAGACTAATTTGG+AGG 0.544065 3_2:-87071273 Msa0434320:CDS
GAAATTCTAAAATAACTTGG+TGG 0.544940 3_2:+87070844 None:intergenic
TTTGGAACCAAAGTAGGACC+AGG 0.554273 3_2:-87071948 Msa0434320:CDS
TTGTCTTCTTCTGATAACCC+TGG 0.555389 3_2:+87071930 None:intergenic
ACATGAGCTACAATAACTCT+AGG 0.559577 3_2:+87070951 None:intergenic
CCCCAAAGCAACCAACCAGA+AGG 0.561618 3_2:+87071558 None:intergenic
GGAAAGCACACAGATGAGAA+AGG 0.569880 3_2:-87071701 Msa0434320:CDS
AAACCAGTGAGGATGTTCCC+TGG 0.577786 3_2:+87071595 None:intergenic
CACATTAAAGTCAAATCCAC+CGG 0.582623 3_2:-87071722 Msa0434320:CDS
ACTCCAGGGAACATCCTCAC+TGG 0.606948 3_2:-87071598 Msa0434320:CDS
CATAGCCAAGTGAACCACAT+AGG 0.609497 3_2:+87071638 None:intergenic
AGCCAAGTGAACCACATAGG+AGG 0.616311 3_2:+87071641 None:intergenic
CCCAAAGCAACCAACCAGAA+GGG 0.617292 3_2:+87071559 None:intergenic
AATGGCCACAGTTATTGCCA+TGG 0.626509 3_2:-87071236 Msa0434320:CDS
GTTGAAGAATGGCATTGCCA+TGG 0.631337 3_2:+87071219 None:intergenic
AAATGGGTGCCAACATGATG+TGG 0.632507 3_2:-87071360 Msa0434320:CDS
TGAGAAAGGCAAATGTGTTG+GGG 0.635338 3_2:-87071687 Msa0434320:CDS
TGAACGCGGCCACATCATGT+TGG 0.643082 3_2:+87071351 None:intergenic
TGCATTATAGTCCATATGGT+AGG 0.648433 3_2:-87071529 Msa0434320:CDS
ATCGGGAAGAAGACAATGAG+TGG 0.651715 3_2:+87071160 None:intergenic
CATTTGGTGATCACACTCCA+GGG 0.652654 3_2:-87071612 Msa0434320:CDS
TTGGAACCAAAGTAGGACCA+GGG 0.663393 3_2:-87071947 Msa0434320:CDS
CATAAAATCCAAAACCAGTG+AGG 0.669591 3_2:+87071584 None:intergenic
CATTGCCATGGCAATAACTG+TGG 0.713530 3_2:+87071231 None:intergenic
TCATTTATGAAAGATGAACG+CGG 0.742748 3_2:+87071337 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATGTTGTTAATATTTTGT+TGG + chr3_2:87070910-87070929 None:intergenic 15.0%
!! TTTCATAATTATCCAATAAT+TGG + chr3_2:87070936-87070955 None:intergenic 15.0%
!!! TTATCTCTATGTTTTTATTT+AGG - chr3_2:87071240-87071259 Msa0434320:CDS 15.0%
!!! ATATGTTGTTAATATTTTGT+TGG + chr3_2:87070910-87070929 None:intergenic 15.0%
!! TTTCATAATTATCCAATAAT+TGG + chr3_2:87070936-87070955 None:intergenic 15.0%
!!! TTATCTCTATGTTTTTATTT+AGG - chr3_2:87071240-87071259 Msa0434320:CDS 15.0%
!! ACAACATATATTCCAATTAT+TGG - chr3_2:87070921-87070940 Msa0434320:three_prime_UTR 20.0%
!! TTCCAATTATGTATTTACTA+AGG - chr3_2:87070973-87070992 Msa0434320:exon 20.0%
!! ATTTCAACTATACGAAATAT+TGG + chr3_2:87071610-87071629 None:intergenic 20.0%
!! AATATTTCGTATAGTTGAAA+TGG - chr3_2:87071609-87071628 Msa0434320:CDS 20.0%
!! ATATTTCGTATAGTTGAAAT+GGG - chr3_2:87071610-87071629 Msa0434320:CDS 20.0%
!! TCAACTTATTTAGACTAATT+TGG - chr3_2:87071710-87071729 Msa0434320:CDS 20.0%
!!! TTGGAAATTCTAAAATAACT+TGG + chr3_2:87072148-87072167 None:intergenic 20.0%
!! ACAACATATATTCCAATTAT+TGG - chr3_2:87070921-87070940 Msa0434320:three_prime_UTR 20.0%
!! TTCCAATTATGTATTTACTA+AGG - chr3_2:87070973-87070992 Msa0434320:exon 20.0%
!! ATTTCAACTATACGAAATAT+TGG + chr3_2:87071610-87071629 None:intergenic 20.0%
!! AATATTTCGTATAGTTGAAA+TGG - chr3_2:87071609-87071628 Msa0434320:CDS 20.0%
!! ATATTTCGTATAGTTGAAAT+GGG - chr3_2:87071610-87071629 Msa0434320:CDS 20.0%
!! TCAACTTATTTAGACTAATT+TGG - chr3_2:87071710-87071729 Msa0434320:CDS 20.0%
!!! TTGGAAATTCTAAAATAACT+TGG + chr3_2:87072148-87072167 None:intergenic 20.0%
! TGCCTTAGTAAATACATAAT+TGG + chr3_2:87070978-87070997 None:intergenic 25.0%
!!! TGTATTTACTAAGGCATTTT+TGG - chr3_2:87070982-87071001 Msa0434320:exon 25.0%
! TATCAGAAGAAGACAAAATT+TGG - chr3_2:87071063-87071082 Msa0434320:CDS 25.0%
! TACTGTTGTCTATGATATAA+TGG - chr3_2:87071133-87071152 Msa0434320:CDS 25.0%
! GAAGTATAAAAAAGTAGACT+TGG - chr3_2:87071181-87071200 Msa0434320:CDS 25.0%
! TAGAGATAACTGATATCAAT+GGG + chr3_2:87071229-87071248 None:intergenic 25.0%
! ATAGAGATAACTGATATCAA+TGG + chr3_2:87071230-87071249 None:intergenic 25.0%
! TATGTTGATATTAATGTTGC+AGG - chr3_2:87071573-87071592 Msa0434320:CDS 25.0%
! ACTTATTTAGACTAATTTGG+AGG - chr3_2:87071713-87071732 Msa0434320:CDS 25.0%
!! TAAACAGATTTTCATTGAAG+TGG - chr3_2:87071875-87071894 Msa0434320:CDS 25.0%
! ATTCTTACTAATTCCATGAA+TGG + chr3_2:87071962-87071981 None:intergenic 25.0%
! AACAATAGCCTATTTCAAAA+TGG - chr3_2:87072010-87072029 Msa0434320:intron 25.0%
!!! GAAATTCTAAAATAACTTGG+TGG + chr3_2:87072145-87072164 None:intergenic 25.0%
! TGCCTTAGTAAATACATAAT+TGG + chr3_2:87070978-87070997 None:intergenic 25.0%
!!! TGTATTTACTAAGGCATTTT+TGG - chr3_2:87070982-87071001 Msa0434320:exon 25.0%
! TATCAGAAGAAGACAAAATT+TGG - chr3_2:87071063-87071082 Msa0434320:CDS 25.0%
! TACTGTTGTCTATGATATAA+TGG - chr3_2:87071133-87071152 Msa0434320:CDS 25.0%
! GAAGTATAAAAAAGTAGACT+TGG - chr3_2:87071181-87071200 Msa0434320:CDS 25.0%
! TAGAGATAACTGATATCAAT+GGG + chr3_2:87071229-87071248 None:intergenic 25.0%
! ATAGAGATAACTGATATCAA+TGG + chr3_2:87071230-87071249 None:intergenic 25.0%
! TATGTTGATATTAATGTTGC+AGG - chr3_2:87071573-87071592 Msa0434320:CDS 25.0%
! ACTTATTTAGACTAATTTGG+AGG - chr3_2:87071713-87071732 Msa0434320:CDS 25.0%
!! TAAACAGATTTTCATTGAAG+TGG - chr3_2:87071875-87071894 Msa0434320:CDS 25.0%
! ATTCTTACTAATTCCATGAA+TGG + chr3_2:87071962-87071981 None:intergenic 25.0%
! AACAATAGCCTATTTCAAAA+TGG - chr3_2:87072010-87072029 Msa0434320:intron 25.0%
!!! GAAATTCTAAAATAACTTGG+TGG + chr3_2:87072145-87072164 None:intergenic 25.0%
TGTATGCATTATAGTCCATA+TGG - chr3_2:87071453-87071472 Msa0434320:intron 30.0%
TCATTTATGAAAGATGAACG+CGG + chr3_2:87071652-87071671 None:intergenic 30.0%
!! TCAAAGAGCCAATTTTGTTT+GGG + chr3_2:87071681-87071700 None:intergenic 30.0%
GAGGACAATATTTGTGATAA+TGG - chr3_2:87071732-87071751 Msa0434320:intron 30.0%
AACAAACAAGACTCAATAGT+TGG + chr3_2:87071909-87071928 None:intergenic 30.0%
TGTATGCATTATAGTCCATA+TGG - chr3_2:87071453-87071472 Msa0434320:intron 30.0%
TCATTTATGAAAGATGAACG+CGG + chr3_2:87071652-87071671 None:intergenic 30.0%
!! TCAAAGAGCCAATTTTGTTT+GGG + chr3_2:87071681-87071700 None:intergenic 30.0%
GAGGACAATATTTGTGATAA+TGG - chr3_2:87071732-87071751 Msa0434320:intron 30.0%
AACAAACAAGACTCAATAGT+TGG + chr3_2:87071909-87071928 None:intergenic 30.0%
TGGAAAGATACAAGTGATGA+AGG + chr3_2:87070890-87070909 None:intergenic 35.0%
! TACTTTGGTTCCAAACAAAC+TGG + chr3_2:87071033-87071052 None:intergenic 35.0%
! AGTTTGTTTGGAACCAAAGT+AGG - chr3_2:87071032-87071051 Msa0434320:CDS 35.0%
!!! TTGGAAAGTTTTGACTGCTT+TGG - chr3_2:87071082-87071101 Msa0434320:CDS 35.0%
!!! TGGAAAGTTTTGACTGCTTT+GGG - chr3_2:87071083-87071102 Msa0434320:CDS 35.0%
CACATTAAAGTCAAATCCAC+CGG - chr3_2:87071264-87071283 Msa0434320:CDS 35.0%
ATGAGAAAGGCAAATGTGTT+GGG - chr3_2:87071298-87071317 Msa0434320:CDS 35.0%
! ACAATACTTTTCCTCCTATG+TGG - chr3_2:87071334-87071353 Msa0434320:CDS 35.0%
CATAAAATCCAAAACCAGTG+AGG + chr3_2:87071405-87071424 None:intergenic 35.0%
TGCATTATAGTCCATATGGT+AGG - chr3_2:87071457-87071476 Msa0434320:intron 35.0%
GCGTTCATCTTTCATAAATG+AGG - chr3_2:87071651-87071670 Msa0434320:CDS 35.0%
! GTCAAAGAGCCAATTTTGTT+TGG + chr3_2:87071682-87071701 None:intergenic 35.0%
TGAGAGATGTGCATTTGTAT+CGG + chr3_2:87071847-87071866 None:intergenic 35.0%
!!! TCTAGGCTCCATTTTGAAAT+AGG + chr3_2:87072021-87072040 None:intergenic 35.0%
ACATGAGCTACAATAACTCT+AGG + chr3_2:87072038-87072057 None:intergenic 35.0%
TGGAAAGATACAAGTGATGA+AGG + chr3_2:87070890-87070909 None:intergenic 35.0%
! TACTTTGGTTCCAAACAAAC+TGG + chr3_2:87071033-87071052 None:intergenic 35.0%
! AGTTTGTTTGGAACCAAAGT+AGG - chr3_2:87071032-87071051 Msa0434320:CDS 35.0%
!!! TTGGAAAGTTTTGACTGCTT+TGG - chr3_2:87071082-87071101 Msa0434320:CDS 35.0%
!!! TGGAAAGTTTTGACTGCTTT+GGG - chr3_2:87071083-87071102 Msa0434320:CDS 35.0%
CACATTAAAGTCAAATCCAC+CGG - chr3_2:87071264-87071283 Msa0434320:CDS 35.0%
ATGAGAAAGGCAAATGTGTT+GGG - chr3_2:87071298-87071317 Msa0434320:CDS 35.0%
! ACAATACTTTTCCTCCTATG+TGG - chr3_2:87071334-87071353 Msa0434320:CDS 35.0%
CATAAAATCCAAAACCAGTG+AGG + chr3_2:87071405-87071424 None:intergenic 35.0%
TGCATTATAGTCCATATGGT+AGG - chr3_2:87071457-87071476 Msa0434320:intron 35.0%
GCGTTCATCTTTCATAAATG+AGG - chr3_2:87071651-87071670 Msa0434320:CDS 35.0%
! GTCAAAGAGCCAATTTTGTT+TGG + chr3_2:87071682-87071701 None:intergenic 35.0%
TGAGAGATGTGCATTTGTAT+CGG + chr3_2:87071847-87071866 None:intergenic 35.0%
!!! TCTAGGCTCCATTTTGAAAT+AGG + chr3_2:87072021-87072040 None:intergenic 35.0%
ACATGAGCTACAATAACTCT+AGG + chr3_2:87072038-87072057 None:intergenic 35.0%
!!! AGGCATTTTTGGCTGTGAAT+AGG - chr3_2:87070993-87071012 Msa0434320:CDS 40.0%
!!! GGCATTTTTGGCTGTGAATA+GGG - chr3_2:87070994-87071013 Msa0434320:CDS 40.0%
!! TTTTGGCTGTGAATAGGGAA+AGG - chr3_2:87070999-87071018 Msa0434320:CDS 40.0%
! GGAGAAAGAACCAGTTTGTT+TGG - chr3_2:87071020-87071039 Msa0434320:CDS 40.0%
TTGTCTTCTTCTGATAACCC+TGG + chr3_2:87071059-87071078 None:intergenic 40.0%
ACTGATATCAATGGGACTAG+TGG + chr3_2:87071221-87071240 None:intergenic 40.0%
TTTCTCATCTGTGTGCTTTC+CGG + chr3_2:87071286-87071305 None:intergenic 40.0%
GATGAGAAAGGCAAATGTGT+TGG - chr3_2:87071297-87071316 Msa0434320:CDS 40.0%
TGAGAAAGGCAAATGTGTTG+GGG - chr3_2:87071299-87071318 Msa0434320:CDS 40.0%
! TTGGATTTTATGAGCCCTTC+TGG - chr3_2:87071413-87071432 Msa0434320:intron 40.0%
! ATTTTATGAGCCCTTCTGGT+TGG - chr3_2:87071417-87071436 Msa0434320:intron 40.0%
GAGGAACACCCAAACAAAAT+TGG - chr3_2:87071670-87071689 Msa0434320:CDS 40.0%
GCAAGAAACTCGTTGAAGAA+TGG + chr3_2:87071781-87071800 None:intergenic 40.0%
AACGAGTTTCTTGCATTGCT+TGG - chr3_2:87071787-87071806 Msa0434320:intron 40.0%
!! TGCTTGGAGCATTTGGATTT+TGG - chr3_2:87071803-87071822 Msa0434320:intron 40.0%
GAGAGATGTGCATTTGTATC+GGG + chr3_2:87071846-87071865 None:intergenic 40.0%
!!! AGGCATTTTTGGCTGTGAAT+AGG - chr3_2:87070993-87071012 Msa0434320:CDS 40.0%
!!! GGCATTTTTGGCTGTGAATA+GGG - chr3_2:87070994-87071013 Msa0434320:CDS 40.0%
!! TTTTGGCTGTGAATAGGGAA+AGG - chr3_2:87070999-87071018 Msa0434320:CDS 40.0%
! GGAGAAAGAACCAGTTTGTT+TGG - chr3_2:87071020-87071039 Msa0434320:CDS 40.0%
TTGTCTTCTTCTGATAACCC+TGG + chr3_2:87071059-87071078 None:intergenic 40.0%
ACTGATATCAATGGGACTAG+TGG + chr3_2:87071221-87071240 None:intergenic 40.0%
TTTCTCATCTGTGTGCTTTC+CGG + chr3_2:87071286-87071305 None:intergenic 40.0%
GATGAGAAAGGCAAATGTGT+TGG - chr3_2:87071297-87071316 Msa0434320:CDS 40.0%
TGAGAAAGGCAAATGTGTTG+GGG - chr3_2:87071299-87071318 Msa0434320:CDS 40.0%
! TTGGATTTTATGAGCCCTTC+TGG - chr3_2:87071413-87071432 Msa0434320:intron 40.0%
! ATTTTATGAGCCCTTCTGGT+TGG - chr3_2:87071417-87071436 Msa0434320:intron 40.0%
GAGGAACACCCAAACAAAAT+TGG - chr3_2:87071670-87071689 Msa0434320:CDS 40.0%
GCAAGAAACTCGTTGAAGAA+TGG + chr3_2:87071781-87071800 None:intergenic 40.0%
AACGAGTTTCTTGCATTGCT+TGG - chr3_2:87071787-87071806 Msa0434320:intron 40.0%
!! TGCTTGGAGCATTTGGATTT+TGG - chr3_2:87071803-87071822 Msa0434320:intron 40.0%
GAGAGATGTGCATTTGTATC+GGG + chr3_2:87071846-87071865 None:intergenic 40.0%
! TTTGGAACCAAAGTAGGACC+AGG - chr3_2:87071038-87071057 Msa0434320:CDS 45.0%
TTGGAACCAAAGTAGGACCA+GGG - chr3_2:87071039-87071058 Msa0434320:CDS 45.0%
TGATAACCCTGGTCCTACTT+TGG + chr3_2:87071048-87071067 None:intergenic 45.0%
! GGAAAGCACACAGATGAGAA+AGG - chr3_2:87071285-87071304 Msa0434320:CDS 45.0%
TTCCTCCTATGTGGTTCACT+TGG - chr3_2:87071343-87071362 Msa0434320:CDS 45.0%
CATAGCCAAGTGAACCACAT+AGG + chr3_2:87071351-87071370 None:intergenic 45.0%
TCACTTGGCTATGCTGCATT+TGG - chr3_2:87071358-87071377 Msa0434320:CDS 45.0%
! CATTTGGTGATCACACTCCA+GGG - chr3_2:87071374-87071393 Msa0434320:CDS 45.0%
CCTGATATGCTCCTACCATA+TGG + chr3_2:87071471-87071490 None:intergenic 45.0%
! CCATATGGTAGGAGCATATC+AGG - chr3_2:87071468-87071487 Msa0434320:intron 45.0%
AAATGGGTGCCAACATGATG+TGG - chr3_2:87071626-87071645 Msa0434320:CDS 45.0%
AATGGCCACAGTTATTGCCA+TGG - chr3_2:87071750-87071769 Msa0434320:intron 45.0%
CATTGCCATGGCAATAACTG+TGG + chr3_2:87071758-87071777 None:intergenic 45.0%
GTTGAAGAATGGCATTGCCA+TGG + chr3_2:87071770-87071789 None:intergenic 45.0%
! CTTGCATTGCTTGGAGCATT+TGG - chr3_2:87071796-87071815 Msa0434320:intron 45.0%
ATCGGGAAGAAGACAATGAG+TGG + chr3_2:87071829-87071848 None:intergenic 45.0%
! TTTGGAACCAAAGTAGGACC+AGG - chr3_2:87071038-87071057 Msa0434320:CDS 45.0%
TTGGAACCAAAGTAGGACCA+GGG - chr3_2:87071039-87071058 Msa0434320:CDS 45.0%
TGATAACCCTGGTCCTACTT+TGG + chr3_2:87071048-87071067 None:intergenic 45.0%
! GGAAAGCACACAGATGAGAA+AGG - chr3_2:87071285-87071304 Msa0434320:CDS 45.0%
TTCCTCCTATGTGGTTCACT+TGG - chr3_2:87071343-87071362 Msa0434320:CDS 45.0%
CATAGCCAAGTGAACCACAT+AGG + chr3_2:87071351-87071370 None:intergenic 45.0%
TCACTTGGCTATGCTGCATT+TGG - chr3_2:87071358-87071377 Msa0434320:CDS 45.0%
! CATTTGGTGATCACACTCCA+GGG - chr3_2:87071374-87071393 Msa0434320:CDS 45.0%
CCTGATATGCTCCTACCATA+TGG + chr3_2:87071471-87071490 None:intergenic 45.0%
! CCATATGGTAGGAGCATATC+AGG - chr3_2:87071468-87071487 Msa0434320:intron 45.0%
AAATGGGTGCCAACATGATG+TGG - chr3_2:87071626-87071645 Msa0434320:CDS 45.0%
AATGGCCACAGTTATTGCCA+TGG - chr3_2:87071750-87071769 Msa0434320:intron 45.0%
CATTGCCATGGCAATAACTG+TGG + chr3_2:87071758-87071777 None:intergenic 45.0%
GTTGAAGAATGGCATTGCCA+TGG + chr3_2:87071770-87071789 None:intergenic 45.0%
! CTTGCATTGCTTGGAGCATT+TGG - chr3_2:87071796-87071815 Msa0434320:intron 45.0%
ATCGGGAAGAAGACAATGAG+TGG + chr3_2:87071829-87071848 None:intergenic 45.0%
TGGACTCTCTCTAGCAGTTG+TGG - chr3_2:87070846-87070865 Msa0434320:three_prime_UTR 50.0%
TCTCTAGCAGTTGTGGTGTC+AGG - chr3_2:87070853-87070872 Msa0434320:three_prime_UTR 50.0%
AGCCAAGTGAACCACATAGG+AGG + chr3_2:87071348-87071367 None:intergenic 50.0%
! GCATTTGGTGATCACACTCC+AGG - chr3_2:87071373-87071392 Msa0434320:CDS 50.0%
AAACCAGTGAGGATGTTCCC+TGG + chr3_2:87071394-87071413 None:intergenic 50.0%
!!! GGGAACATCCTCACTGGTTT+TGG - chr3_2:87071394-87071413 Msa0434320:CDS 50.0%
CCCAAAGCAACCAACCAGAA+GGG + chr3_2:87071430-87071449 None:intergenic 50.0%
! CCCTTCTGGTTGGTTGCTTT+GGG - chr3_2:87071427-87071446 Msa0434320:intron 50.0%
! CCTTCTGGTTGGTTGCTTTG+GGG - chr3_2:87071428-87071447 Msa0434320:intron 50.0%
GTTTCAGTAGCTGCTGCAGT+TGG - chr3_2:87071934-87071953 Msa0434320:CDS 50.0%
! GCTGCAGTTGGTTCCATTCA+TGG - chr3_2:87071946-87071965 Msa0434320:CDS 50.0%
TGGACTCTCTCTAGCAGTTG+TGG - chr3_2:87070846-87070865 Msa0434320:three_prime_UTR 50.0%
TCTCTAGCAGTTGTGGTGTC+AGG - chr3_2:87070853-87070872 Msa0434320:three_prime_UTR 50.0%
AGCCAAGTGAACCACATAGG+AGG + chr3_2:87071348-87071367 None:intergenic 50.0%
! GCATTTGGTGATCACACTCC+AGG - chr3_2:87071373-87071392 Msa0434320:CDS 50.0%
AAACCAGTGAGGATGTTCCC+TGG + chr3_2:87071394-87071413 None:intergenic 50.0%
!!! GGGAACATCCTCACTGGTTT+TGG - chr3_2:87071394-87071413 Msa0434320:CDS 50.0%
CCCAAAGCAACCAACCAGAA+GGG + chr3_2:87071430-87071449 None:intergenic 50.0%
! CCCTTCTGGTTGGTTGCTTT+GGG - chr3_2:87071427-87071446 Msa0434320:intron 50.0%
! CCTTCTGGTTGGTTGCTTTG+GGG - chr3_2:87071428-87071447 Msa0434320:intron 50.0%
GTTTCAGTAGCTGCTGCAGT+TGG - chr3_2:87071934-87071953 Msa0434320:CDS 50.0%
! GCTGCAGTTGGTTCCATTCA+TGG - chr3_2:87071946-87071965 Msa0434320:CDS 50.0%
CTCATCTGTGTGCTTTCCGG+TGG + chr3_2:87071283-87071302 None:intergenic 55.0%
ACTCCAGGGAACATCCTCAC+TGG - chr3_2:87071388-87071407 Msa0434320:CDS 55.0%
! GCCCTTCTGGTTGGTTGCTT+TGG - chr3_2:87071426-87071445 Msa0434320:intron 55.0%
CCCCAAAGCAACCAACCAGA+AGG + chr3_2:87071431-87071450 None:intergenic 55.0%
TGAACGCGGCCACATCATGT+TGG + chr3_2:87071638-87071657 None:intergenic 55.0%
CTCATCTGTGTGCTTTCCGG+TGG + chr3_2:87071283-87071302 None:intergenic 55.0%
ACTCCAGGGAACATCCTCAC+TGG - chr3_2:87071388-87071407 Msa0434320:CDS 55.0%
! GCCCTTCTGGTTGGTTGCTT+TGG - chr3_2:87071426-87071445 Msa0434320:intron 55.0%
CCCCAAAGCAACCAACCAGA+AGG + chr3_2:87071431-87071450 None:intergenic 55.0%
TGAACGCGGCCACATCATGT+TGG + chr3_2:87071638-87071657 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 87070835 87072173 87070835 ID=Msa0434320;Name=Msa0434320
chr3_2 mRNA 87070835 87072173 87070835 ID=Msa0434320-mRNA-1;Parent=Msa0434320;Name=Msa0434320-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|1|0.75|1|0.66|0.75|4|156|276
chr3_2 exon 87070835 87071413 87070835 ID=Msa0434320-mRNA-1:exon:25320;Parent=Msa0434320-mRNA-1
chr3_2 exon 87071519 87071746 87071519 ID=Msa0434320-mRNA-1:exon:25319;Parent=Msa0434320-mRNA-1
chr3_2 exon 87071854 87071993 87071854 ID=Msa0434320-mRNA-1:exon:25318;Parent=Msa0434320-mRNA-1
chr3_2 exon 87072134 87072173 87072134 ID=Msa0434320-mRNA-1:exon:25317;Parent=Msa0434320-mRNA-1
chr3_2 CDS 87072134 87072173 87072134 ID=Msa0434320-mRNA-1:cds;Parent=Msa0434320-mRNA-1
chr3_2 CDS 87071854 87071993 87071854 ID=Msa0434320-mRNA-1:cds;Parent=Msa0434320-mRNA-1
chr3_2 CDS 87071519 87071746 87071519 ID=Msa0434320-mRNA-1:cds;Parent=Msa0434320-mRNA-1
chr3_2 CDS 87070991 87071413 87070991 ID=Msa0434320-mRNA-1:cds;Parent=Msa0434320-mRNA-1
chr3_2 three_prime_UTR 87070835 87070990 87070835 ID=Msa0434320-mRNA-1:three_prime_utr;Parent=Msa0434320-mRNA-1
Gene Sequence

>Msa0434320

TTAATTGGAAGTGGACTCTCTCTAGCAGTTGTGGTGTCAGGGAAAGGAGAAAGAACCAGTTTGTTTGGAACCAAAGTAGGACCAGGGTTATCAGAAGAAGACAAAATTTGGAAAGTTTTGACTGCTTTGGGAAACATTGCACTTGCTTGCTCTTATGCTACTGTTGTCTATGATATAATGGACACATTAAAGTCAAATCCACCGGAAAGCACACAGATGAGAAAGGCAAATGTGTTGGGGATCACTACAATGACAATACTTTTCCTCCTATGTGGTTCACTTGGCTATGCTGCATTTGGTGATCACACTCCAGGGAACATCCTCACTGGTTTTGGATTTTATGAGCCCTTCTGGTTGGTTGCTTTGGGGAATGTATGCATTATAGTCCATATGGTAGGAGCATATCAGGTGTTAGCTCAGCCAATATTTCGTATAGTTGAAATGGGTGCCAACATGATGTGGCCGCGTTCATCTTTCATAAATGAGGAACACCCAAACAAAATTGGCTCTTTGACATTCAACATCAACTTATTTAGACTAATTTGGAGGACAATATTTGTGATAATGGCCACAGTTATTGCCATGGCAATGCCATTCTTCAACGAGTTTCTTGCATTGCTTGGAGCATTTGGATTTTGGCCACTCATTGTCTTCTTCCCGATACAAATGCACATCTCTCAGAAACATATAAACAGATTTTCATTGAAGTGGTGTGTGCTCCAACTATTGAGTCTTGTTTGTTTTTTTGTTTCAGTAGCTGCTGCAGTTGGTTCCATTCATGGAATTAGTAAGAATATCACAAAATACAAACTCTTCATGTATAAACAATAG

Protein sequence

>Msa0434320

LIGSGLSLAVVVSGKGERTSLFGTKVGPGLSEEDKIWKVLTALGNIALACSYATVVYDIMDTLKSNPPESTQMRKANVLGITTMTILFLLCGSLGYAAFGDHTPGNILTGFGFYEPFWLVALGNVCIIVHMVGAYQVLAQPIFRIVEMGANMMWPRSSFINEEHPNKIGSLTFNINLFRLIWRTIFVIMATVIAMAMPFFNEFLALLGAFGFWPLIVFFPIQMHISQKHINRFSLKWCVLQLLSLVCFFVSVAAAVGSIHGISKNITKYKLFMYKQ*