AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1190130


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1190130 MtrunA17_Chr4g0056771 97.544 285 7 0 1 285 1 285 0.0 577
Msa1190130 MtrunA17_Chr7g0270061 37.113 194 117 1 78 266 86 279 2.61e-41 144
Msa1190130 MtrunA17_Chr4g0038261 33.333 240 148 5 49 282 4 237 2.65e-40 140
Msa1190130 MtrunA17_Chr1g0194601 36.683 199 118 2 76 266 84 282 4.51e-40 141
Msa1190130 MtrunA17_Chr7g0251451 36.126 191 122 0 91 281 75 265 9.19e-39 137
Msa1190130 MtrunA17_Chr5g0409311 29.740 269 173 5 1 266 4 259 1.41e-36 132
Msa1190130 MtrunA17_Chr4g0015831 42.975 121 69 0 74 194 1 121 7.04e-36 125
Msa1190130 MtrunA17_CPg0492721 42.975 121 69 0 74 194 1 121 7.04e-36 125
Msa1190130 MtrunA17_Chr4g0034751 33.333 183 118 1 85 267 93 271 5.94e-32 119
Msa1190130 MtrunA17_Chr4g0055551 35.638 188 113 1 95 274 104 291 3.08e-27 107
Msa1190130 MtrunA17_Chr7g0272191 31.746 189 116 4 104 279 119 307 4.86e-21 90.9
Msa1190130 MtrunA17_Chr1g0207341 31.148 183 116 2 95 267 155 337 6.89e-21 91.3
Msa1190130 MtrunA17_Chr1g0184041 39.474 76 46 0 109 184 100 175 2.89e-16 75.1
Msa1190130 MtrunA17_Chr4g0016921 38.806 67 38 2 74 140 1 64 1.03e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1190130 AT1G12410.1 64.912 285 94 4 1 285 1 279 1.90e-135 384
Msa1190130 ATCG00670.1 41.451 193 112 1 74 265 1 193 5.14e-54 174
Msa1190130 AT5G23140.1 36.041 197 121 2 81 275 37 230 2.17e-42 145
Msa1190130 AT1G02560.1 41.916 167 97 0 100 266 119 285 8.07e-42 146
Msa1190130 AT5G45390.1 36.628 172 109 0 95 266 79 250 2.07e-36 132
Msa1190130 AT4G17040.1 32.258 248 151 4 36 274 53 292 2.35e-36 132
Msa1190130 AT1G66670.1 34.031 191 111 4 82 266 75 256 5.19e-36 131
Msa1190130 AT1G11750.1 34.682 173 113 0 94 266 95 267 2.25e-34 125
Msa1190130 AT1G11750.2 34.483 174 114 0 94 267 113 286 3.15e-34 126
Msa1190130 AT1G09130.2 32.787 183 112 2 95 266 121 303 4.63e-26 105
Msa1190130 AT1G09130.1 32.787 183 112 2 95 266 121 303 4.63e-26 105
Msa1190130 AT1G09130.3 32.787 183 112 2 95 266 121 303 1.22e-25 104
Msa1190130 AT1G49970.1 34.066 182 110 2 95 266 171 352 8.15e-23 97.1

Find 92 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTATCAATGGGTTGATTTA+TGG 0.126424 8_1:+32991727 Msa1190130:CDS
TTTGTGCCCTTACTGGTTTC+TGG 0.139154 8_1:-32991647 None:intergenic
TTAACAAGGTTCTCAATTTC+AGG 0.184827 8_1:+32990931 Msa1190130:CDS
TTTCAATCCGGAGTAGATTT+TGG 0.262983 8_1:-32990756 None:intergenic
GCACAAGAGGCCCTTGACTA+TGG 0.268943 8_1:+32993805 Msa1190130:CDS
ATCCGAATTTGTGCCCTTAC+TGG 0.280153 8_1:-32991654 None:intergenic
CCTTCACCAGGTGTTCTATA+GGG 0.283797 8_1:-32991702 None:intergenic
ATACTACTCAGTAATATAAA+TGG 0.288977 8_1:-32993925 None:intergenic
TTATTTCCATAGTGAACTTT+TGG 0.298994 8_1:+32993973 Msa1190130:three_prime_UTR
AAGCTCTACTTGTACATTAA+TGG 0.307990 8_1:+32992038 Msa1190130:CDS
AGAATTTAGCAATCAAATAT+TGG 0.329049 8_1:+32991977 Msa1190130:CDS
AATGTACAAGTAGAGCTTCT+TGG 0.334034 8_1:-32992033 None:intergenic
TCCTTCACCAGGTGTTCTAT+AGG 0.343431 8_1:-32991703 None:intergenic
CCTCGCAAGGATGCTGGCTC+AGG 0.377210 8_1:+32993874 Msa1190130:CDS
TTTGGCATATGTATAACGTT+TGG 0.386721 8_1:+32993991 Msa1190130:three_prime_UTR
CCTATATGCACCCATTGTAT+AGG 0.399844 8_1:+32992234 Msa1190130:CDS
ATAGTGCTTTCAGTAAGAAT+TGG 0.404617 8_1:-32994046 None:intergenic
TCTGAGTTGGCTAACAAAAC+AGG 0.406372 8_1:+32993281 Msa1190130:CDS
GAGCAGCTCCTGCTGGAGAT+TGG 0.410929 8_1:-32993089 None:intergenic
GATGCACCTCGCAAGGATGC+TGG 0.413454 8_1:+32993868 Msa1190130:CDS
AGCAGGAGCTGCTCGTGGTC+GGG 0.415509 8_1:+32993098 Msa1190130:CDS
AACCAGTAAGGGCACAAATT+CGG 0.415853 8_1:+32991652 Msa1190130:CDS
GTCATTTAAGGGAGATGTAA+TGG 0.417041 8_1:-32994152 None:intergenic
CATTGTATAGGCCAAGCTTA+TGG 0.426540 8_1:+32992246 Msa1190130:CDS
CCTATACAATGGGTGCATAT+AGG 0.431234 8_1:-32992234 None:intergenic
AGATCACCGAAGACTTGAAA+AGG 0.434233 8_1:+32993767 Msa1190130:intron
AGGCATTGGTTAAGAACTCT+TGG 0.435872 8_1:+32993894 Msa1190130:exon
CATATGCCAAAAGTTCACTA+TGG 0.436316 8_1:-32993979 None:intergenic
TGGGAGACAAACAGCGGATA+GGG 0.447908 8_1:-32990560 None:intergenic
AAATGGGCACACGTGAAGAT+TGG 0.447978 8_1:-32990781 None:intergenic
CGACCACGAGCAGCTCCTGC+TGG 0.449924 8_1:-32993096 None:intergenic
CAGCAGGAGCTGCTCGTGGT+CGG 0.460713 8_1:+32993097 Msa1190130:CDS
TACTTGTACATTAATGGTCC+TGG 0.468494 8_1:+32992044 Msa1190130:CDS
TTGCAACTTTATCACATCTC+AGG 0.469407 8_1:+32994116 Msa1190130:three_prime_UTR
GCAGCATTTCTACTTGCAGC+TGG 0.472807 8_1:+32992273 Msa1190130:CDS
AGTGAACTGACCTTCTCAAC+AGG 0.482520 8_1:-32993308 None:intergenic
GGGGTTGAAACGGTCGTGTA+GGG 0.483114 8_1:-32990621 None:intergenic
GTGAACGACGATGGAAGGAA+TGG 0.484679 8_1:-32990580 None:intergenic
AAGGATGCTGGCTCAGGCAT+TGG 0.507073 8_1:+32993880 Msa1190130:CDS
ATAAGCTTGGCCTATACAAT+GGG 0.511333 8_1:-32992244 None:intergenic
CTGGTGAAGGAACTTATCAA+TGG 0.511648 8_1:+32991715 Msa1190130:CDS
CTTCACCAGGTGTTCTATAG+GGG 0.512601 8_1:-32991701 None:intergenic
CACAAGAGGCCCTTGACTAT+GGG 0.513257 8_1:+32993806 Msa1190130:CDS
AAAGTTGCAATAGAAAATAG+AGG 0.523846 8_1:-32994103 None:intergenic
GGCTCATTGACAGAATTGTC+AGG 0.528948 8_1:+32993827 Msa1190130:CDS
TGAAGATTGGAGTTTCAATC+CGG 0.529739 8_1:-32990768 None:intergenic
CATAAGCTTGGCCTATACAA+TGG 0.531992 8_1:-32992245 None:intergenic
ATGGGAGACAAACAGCGGAT+AGG 0.535058 8_1:-32990561 None:intergenic
CAAATTCGGATGATGCCCAT+TGG 0.537610 8_1:+32991666 Msa1190130:CDS
TGGTGAAGGAACTTATCAAT+GGG 0.547080 8_1:+32991716 Msa1190130:CDS
TGAACGACGATGGAAGGAAT+GGG 0.549143 8_1:-32990579 None:intergenic
AACAGGCCAGCCTGTTGAGA+AGG 0.549239 8_1:+32993298 Msa1190130:CDS
ATGCTAACCAGAAACCAGTA+AGG 0.549654 8_1:+32991640 Msa1190130:CDS
GGTGTTCTATAGGGGACTCT+AGG 0.553085 8_1:-32991693 None:intergenic
CATTGATAAGTTCCTTCACC+AGG 0.553758 8_1:-32991714 None:intergenic
AAAAGCTGATGCACCTCGCA+AGG 0.558743 8_1:+32993861 Msa1190130:CDS
TTGAGGTGAACGACGATGGA+AGG 0.559153 8_1:-32990585 None:intergenic
CGAGAACGTGTTATCTTCAT+CGG 0.562508 8_1:+32991939 Msa1190130:CDS
AACTGACCTTCTCAACAGGC+TGG 0.565578 8_1:-32993304 None:intergenic
TCTACTTGCAGCTGGAGAGA+AGG 0.566048 8_1:+32992281 Msa1190130:CDS
CCCGTGTTTATTCTCCTCCT+AGG 0.566421 8_1:+32990643 Msa1190130:CDS
GATCACCGAAGACTTGAAAA+GGG 0.568998 8_1:+32993768 Msa1190130:intron
TGTCAATGAGCCCATAGTCA+AGG 0.569550 8_1:-32993816 None:intergenic
CCCTATAGAACACCTGGTGA+AGG 0.570130 8_1:+32991702 Msa1190130:CDS
GGGGACTCTAGGAGTTCCAA+TGG 0.572526 8_1:-32991682 None:intergenic
ATGCTGCAAGACCATAAGCT+TGG 0.573039 8_1:-32992257 None:intergenic
CATGTTGAGGTGAACGACGA+TGG 0.577171 8_1:-32990589 None:intergenic
GTTTCCACCAAAATCTACTC+CGG 0.585864 8_1:+32990749 Msa1190130:CDS
TCTCCAGCAGGAGCTGCTCG+TGG 0.586081 8_1:+32993093 Msa1190130:CDS
TGGAGAACAATTCTTGCAAG+AGG 0.588103 8_1:-32993069 None:intergenic
GTCAATGAGCCCATAGTCAA+GGG 0.588285 8_1:-32993815 None:intergenic
TTGACAGAATTGTCAGGCCA+CGG 0.588957 8_1:+32993833 Msa1190130:CDS
ATTGTTCTCCAATCTCCAGC+AGG 0.591740 8_1:+32993081 Msa1190130:CDS
AGAGTCCCCTATAGAACACC+TGG 0.598970 8_1:+32991696 Msa1190130:CDS
TGTACATTAATGGTCCTGGT+GGG 0.599482 8_1:+32992048 Msa1190130:CDS
AGGAGTCTGCAAGCTTTGCA+TGG 0.619828 8_1:-32992214 None:intergenic
ATTGTGTGAGATTACCTAGG+AGG 0.620949 8_1:-32990657 None:intergenic
AAAACGATTTGATGCACAAG+AGG 0.623503 8_1:+32993792 Msa1190130:CDS
GGGACTCTAGGAGTTCCAAT+GGG 0.623929 8_1:-32991681 None:intergenic
TTGTACATTAATGGTCCTGG+TGG 0.642823 8_1:+32992047 Msa1190130:CDS
GTACATTAATGGTCCTGGTG+GGG 0.651895 8_1:+32992049 Msa1190130:CDS
ACCTAGGAGGAGAATAAACA+CGG 0.655551 8_1:-32990644 None:intergenic
TCATTACTTACATCCCCACC+AGG 0.676936 8_1:-32992062 None:intergenic
TGCTAACCAGAAACCAGTAA+GGG 0.683549 8_1:+32991641 Msa1190130:CDS
CGTCGTTCACCTCAACATGA+CGG 0.689478 8_1:+32990593 Msa1190130:exon
CCTAGGAGGAGAATAAACAC+GGG 0.702649 8_1:-32990643 None:intergenic
AGGGTGCGACCGTCATGTTG+AGG 0.710339 8_1:-32990602 None:intergenic
GTATCGTAGAGAGACATGCA+TGG 0.715789 8_1:-32992192 None:intergenic
CTAGGAGGAGAATAAACACG+GGG 0.729198 8_1:-32990642 None:intergenic
AGGAGGAGAATAAACACGGG+GGG 0.747945 8_1:-32990640 None:intergenic
AAGGAATGGGAGACAAACAG+CGG 0.758063 8_1:-32990566 None:intergenic
TAGGAGGAGAATAAACACGG+GGG 0.826083 8_1:-32990641 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCGTTATTATTATTATTTT+CGG + chr8_1:32991142-32991161 Msa1190130:intron 10.0%
!! AATTGAAATGAAAAATTTGT+GGG - chr8_1:32990685-32990704 None:intergenic 15.0%
!! AAATTGAAATGAAAAATTTG+TGG - chr8_1:32990686-32990705 None:intergenic 15.0%
!! AAGAATGAAATTAAGAAAAT+GGG - chr8_1:32990800-32990819 None:intergenic 15.0%
!!! TATGATTGGTATTTTTTTTA+AGG + chr8_1:32991226-32991245 Msa1190130:intron 15.0%
!! GAAGAATGAAATTAAGAAAA+TGG - chr8_1:32990801-32990820 None:intergenic 20.0%
!!! TTTTTTTGTTAATTTCCTGT+TGG + chr8_1:32991067-32991086 Msa1190130:intron 20.0%
!! AATCATAATATTTAACACCA+CGG - chr8_1:32991213-32991232 None:intergenic 20.0%
!! TACCTAAAAACATAAAAGTT+TGG - chr8_1:32991621-32991640 None:intergenic 20.0%
!! AGAATTTAGCAATCAAATAT+TGG + chr8_1:32991977-32991996 Msa1190130:CDS 20.0%
!! TAAGTAATGATTCTAATGTT+TGG + chr8_1:32992075-32992094 Msa1190130:intron 20.0%
!! AATATTAAACTAGAAACAAG+AGG - chr8_1:32992117-32992136 None:intergenic 20.0%
!! TAAAAAGATTTCCTACATTA+CGG + chr8_1:32992400-32992419 Msa1190130:intron 20.0%
!! TTATATATAACCACAAAAGA+AGG + chr8_1:32992609-32992628 Msa1190130:intron 20.0%
!! CTATAAATATAACACATGTT+AGG - chr8_1:32992677-32992696 None:intergenic 20.0%
!! GTATGTTAAAATGAAAAAGT+TGG + chr8_1:32992751-32992770 Msa1190130:intron 20.0%
!! TGTAATATTCTGTTGTATTA+AGG + chr8_1:32993029-32993048 Msa1190130:intron 20.0%
!! GTAATATTCTGTTGTATTAA+GGG + chr8_1:32993030-32993049 Msa1190130:intron 20.0%
!! CTGTATGATGAAAAAAAAAA+AGG + chr8_1:32993507-32993526 Msa1190130:intron 20.0%
!! AAAGGTTCTTGAAAAATATT+TGG + chr8_1:32993525-32993544 Msa1190130:intron 20.0%
!! ATACTACTCAGTAATATAAA+TGG - chr8_1:32993928-32993947 None:intergenic 20.0%
!! AAAGTACCTGAAATTGAAAA+TGG - chr8_1:32990861-32990880 None:intergenic 25.0%
!!! TTTTCAATTTCAGGTACTTT+TGG + chr8_1:32990861-32990880 Msa1190130:intron 25.0%
!!! GTTTTTTGGTAAAGTTAACA+AGG + chr8_1:32990917-32990936 Msa1190130:CDS 25.0%
!!! ATTATTATTTTCGGATTAGC+AGG + chr8_1:32991151-32991170 Msa1190130:intron 25.0%
!! GTGGTGTTAAATATTATGAT+TGG + chr8_1:32991212-32991231 Msa1190130:intron 25.0%
!!! GTTTTAATCCATACTTTCAT+TGG - chr8_1:32991487-32991506 None:intergenic 25.0%
!! TGAAAGTATGGATTAAAACA+TGG + chr8_1:32991488-32991507 Msa1190130:intron 25.0%
!! TGCCAAACTTTTATGTTTTT+AGG + chr8_1:32991616-32991635 Msa1190130:intron 25.0%
! AAAAAGATTTCCTACATTAC+GGG + chr8_1:32992401-32992420 Msa1190130:intron 25.0%
! TTGCATTCTCAATATAATCA+AGG + chr8_1:32992441-32992460 Msa1190130:intron 25.0%
! ATTCTCAATATAATCAAGGA+TGG + chr8_1:32992445-32992464 Msa1190130:intron 25.0%
! ATGATCCTTAATCATATTTG+TGG - chr8_1:32992536-32992555 None:intergenic 25.0%
! TTTCCATAATTTCAAACTAC+CGG - chr8_1:32992782-32992801 None:intergenic 25.0%
! TGTGACATTCATTTCTAAAT+TGG + chr8_1:32992915-32992934 Msa1190130:intron 25.0%
! TGACATCTATCTCAAAAAAA+AGG - chr8_1:32993132-32993151 None:intergenic 25.0%
!!! TCACTTTAAAATGGAATTCA+TGG + chr8_1:32993326-32993345 Msa1190130:intron 25.0%
!!! TCTTAGAGTTCATTTTTTCA+TGG + chr8_1:32993680-32993699 Msa1190130:intron 25.0%
!! TTATTTCCATAGTGAACTTT+TGG + chr8_1:32993973-32993992 Msa1190130:three_prime_UTR 25.0%
! AAAGTTGCAATAGAAAATAG+AGG - chr8_1:32994106-32994125 None:intergenic 25.0%
! CATTCACCATTTTCAATTTC+AGG + chr8_1:32990852-32990871 Msa1190130:intron 30.0%
!!! AATGTAAACGCTCAGTTTTT+TGG + chr8_1:32990903-32990922 Msa1190130:CDS 30.0%
TTAACAAGGTTCTCAATTTC+AGG + chr8_1:32990931-32990950 Msa1190130:CDS 30.0%
CAAGTAATTGATTATGTCAC+TGG + chr8_1:32991002-32991021 Msa1190130:intron 30.0%
! ATCACAAATGTAATTTTGCG+AGG + chr8_1:32991438-32991457 Msa1190130:intron 30.0%
TTCTTTGACCAATGAAAGTA+TGG + chr8_1:32991476-32991495 Msa1190130:intron 30.0%
AAAACATGGTTTATGTCACT+TGG + chr8_1:32991502-32991521 Msa1190130:intron 30.0%
! AAACATGGTTTATGTCACTT+GGG + chr8_1:32991503-32991522 Msa1190130:intron 30.0%
!! CTTATCAATGGGTTGATTTA+TGG + chr8_1:32991727-32991746 Msa1190130:CDS 30.0%
CAAGATGTAACAACTTACAA+GGG - chr8_1:32991757-32991776 None:intergenic 30.0%
TCAAGATGTAACAACTTACA+AGG - chr8_1:32991758-32991777 None:intergenic 30.0%
AAAAGACGAAAATAAACTCG+AGG - chr8_1:32991874-32991893 None:intergenic 30.0%
AAGCTCTACTTGTACATTAA+TGG + chr8_1:32992038-32992057 Msa1190130:CDS 30.0%
GTAATGATTCTAATGTTTGG+TGG + chr8_1:32992078-32992097 Msa1190130:intron 30.0%
TTAAATAGCTGATCGTCAAA+AGG - chr8_1:32992140-32992159 None:intergenic 30.0%
AAGTTGTATTAACAGACAGT+GGG - chr8_1:32992318-32992337 None:intergenic 30.0%
AAGTTAAACTTGTCATAGCA+CGG + chr8_1:32992342-32992361 Msa1190130:intron 30.0%
GTATAAAGTCCATTCAACAA+AGG - chr8_1:32992471-32992490 None:intergenic 30.0%
TACATAGATATCTCTTCTGT+AGG - chr8_1:32992497-32992516 None:intergenic 30.0%
TCCTTAATCATATTTGTGGT+GGG - chr8_1:32992532-32992551 None:intergenic 30.0%
ATCCTTAATCATATTTGTGG+TGG - chr8_1:32992533-32992552 None:intergenic 30.0%
! AAACTCATTTCCTTCTTTTG+TGG - chr8_1:32992622-32992641 None:intergenic 30.0%
ATGATCATTCATGACAGTTA+AGG - chr8_1:32992705-32992724 None:intergenic 30.0%
GTTAAAATGAAAAAGTTGGC+AGG + chr8_1:32992755-32992774 Msa1190130:intron 30.0%
! TATTTGGGATAAGATTGTGA+TGG - chr8_1:32992867-32992886 None:intergenic 30.0%
GAGTACAAAGAGGAATATTT+GGG - chr8_1:32992882-32992901 None:intergenic 30.0%
ATCTATCTCAAAAAAAAGGC+AGG - chr8_1:32993128-32993147 None:intergenic 30.0%
AACATTGTGAAAACTCTTTC+AGG + chr8_1:32993202-32993221 Msa1190130:intron 30.0%
! AGATTATCTTTTCTCTGAGT+TGG + chr8_1:32993268-32993287 Msa1190130:CDS 30.0%
! AAGGTCAGTTCACTTTAAAA+TGG + chr8_1:32993317-32993336 Msa1190130:intron 30.0%
CATACAGAGAAGAAGTTATT+TGG - chr8_1:32993494-32993513 None:intergenic 30.0%
! GAATTTAACTTCATCTGCAA+AGG - chr8_1:32993555-32993574 None:intergenic 30.0%
!! GAACTCTAAGATACACAAAA+TGG - chr8_1:32993671-32993690 None:intergenic 30.0%
!!! TCATAACGAGTTTTATTTGC+TGG + chr8_1:32993718-32993737 Msa1190130:intron 30.0%
!!! TTTTACCCTTTTCAAGTCTT+CGG - chr8_1:32993776-32993795 None:intergenic 30.0%
TTTGGCATATGTATAACGTT+TGG + chr8_1:32993991-32994010 Msa1190130:three_prime_UTR 30.0%
ATAGTGCTTTCAGTAAGAAT+TGG - chr8_1:32994049-32994068 None:intergenic 30.0%
! TTTTGGTGGAAACACTGAAA+TGG - chr8_1:32990742-32990761 None:intergenic 35.0%
! TTTCAATCCGGAGTAGATTT+TGG - chr8_1:32990759-32990778 None:intergenic 35.0%
TGAAGATTGGAGTTTCAATC+CGG - chr8_1:32990771-32990790 None:intergenic 35.0%
! AGGTTCTCAATTTCAGGTAA+TGG + chr8_1:32990937-32990956 Msa1190130:intron 35.0%
! GGTTCTCAATTTCAGGTAAT+GGG + chr8_1:32990938-32990957 Msa1190130:intron 35.0%
!! AATTTCAGGTAATGGGTTGT+GGG + chr8_1:32990945-32990964 Msa1190130:intron 35.0%
! GATACATTTTTCCTAGATGC+TGG + chr8_1:32991114-32991133 Msa1190130:intron 35.0%
ATGATATTTGTCGCGAGAAA+TGG + chr8_1:32991252-32991271 Msa1190130:intron 35.0%
TGATATTTGTCGCGAGAAAT+GGG + chr8_1:32991253-32991272 Msa1190130:intron 35.0%
TAATTAGTTGCTTCCCAAGA+GGG + chr8_1:32991321-32991340 Msa1190130:intron 35.0%
TAACTGATTAAGATCTCTCC+TGG - chr8_1:32991355-32991374 None:intergenic 35.0%
!! CTTTAATTTGTGAGTCCTTC+AGG + chr8_1:32991376-32991395 Msa1190130:intron 35.0%
TGGTGAAGGAACTTATCAAT+GGG + chr8_1:32991716-32991735 Msa1190130:CDS 35.0%
TTGTACGCTTATCTAAGAAC+TGG + chr8_1:32991794-32991813 Msa1190130:intron 35.0%
TGGTGAAGGAACATAGTAAT+GGG + chr8_1:32991814-32991833 Msa1190130:intron 35.0%
! GTTACTTTATGACGTAGTCA+TGG + chr8_1:32991836-32991855 Msa1190130:intron 35.0%
AATGTACAAGTAGAGCTTCT+TGG - chr8_1:32992036-32992055 None:intergenic 35.0%
TACTTGTACATTAATGGTCC+TGG + chr8_1:32992044-32992063 Msa1190130:CDS 35.0%
ATAAGCTTGGCCTATACAAT+GGG - chr8_1:32992247-32992266 None:intergenic 35.0%
CAAGTTGTATTAACAGACAG+TGG - chr8_1:32992319-32992338 None:intergenic 35.0%
AGTTAAACTTGTCATAGCAC+GGG + chr8_1:32992343-32992362 Msa1190130:intron 35.0%
CCTTAATCATATTTGTGGTG+GGG - chr8_1:32992531-32992550 None:intergenic 35.0%
GGAGTACAAAGAGGAATATT+TGG - chr8_1:32992883-32992902 None:intergenic 35.0%
AATGTCACAACAAAGCAGAA+TGG - chr8_1:32992904-32992923 None:intergenic 35.0%
GTCAATAGACTCAATACTAC+AGG - chr8_1:32992964-32992983 None:intergenic 35.0%
!! TGAGTCTATTGACTTCTCTA+AGG + chr8_1:32992971-32992990 Msa1190130:intron 35.0%
ACCAAATAACTTCTTCTCTG+TGG + chr8_1:32993408-32993427 Msa1190130:intron 35.0%
TCCACAGAGAAGAAGTTATT+TGG - chr8_1:32993412-32993431 None:intergenic 35.0%
AAAGAAGCTTAGATAGCGAA+AGG - chr8_1:32993614-32993633 None:intergenic 35.0%
AAAACGATTTGATGCACAAG+AGG + chr8_1:32993792-32993811 Msa1190130:CDS 35.0%
CATATGCCAAAAGTTCACTA+TGG - chr8_1:32993982-32994001 None:intergenic 35.0%
TTGCAACTTTATCACATCTC+AGG + chr8_1:32994116-32994135 Msa1190130:three_prime_UTR 35.0%
ACCTAGGAGGAGAATAAACA+CGG - chr8_1:32990647-32990666 None:intergenic 40.0%
ATTGTGTGAGATTACCTAGG+AGG - chr8_1:32990660-32990679 None:intergenic 40.0%
GAGATTGTGTGAGATTACCT+AGG - chr8_1:32990663-32990682 None:intergenic 40.0%
GTTTCCACCAAAATCTACTC+CGG + chr8_1:32990749-32990768 Msa1190130:CDS 40.0%
!! CAATTTCAGGTAATGGGTTG+TGG + chr8_1:32990944-32990963 Msa1190130:intron 40.0%
GATATTTGTCGCGAGAAATG+GGG + chr8_1:32991254-32991273 Msa1190130:intron 40.0%
! CAAAAGCATAAGTGGTAGCA+CGG + chr8_1:32991280-32991299 Msa1190130:intron 40.0%
CTAATTAGTTGCTTCCCAAG+AGG + chr8_1:32991320-32991339 Msa1190130:intron 40.0%
ATGCTAACCAGAAACCAGTA+AGG + chr8_1:32991640-32991659 Msa1190130:CDS 40.0%
TGCTAACCAGAAACCAGTAA+GGG + chr8_1:32991641-32991660 Msa1190130:CDS 40.0%
! AACCAGTAAGGGCACAAATT+CGG + chr8_1:32991652-32991671 Msa1190130:CDS 40.0%
CATTGATAAGTTCCTTCACC+AGG - chr8_1:32991717-32991736 None:intergenic 40.0%
CTGGTGAAGGAACTTATCAA+TGG + chr8_1:32991715-32991734 Msa1190130:CDS 40.0%
GCTTATCTAAGAACTGGTGA+AGG + chr8_1:32991800-32991819 Msa1190130:intron 40.0%
CTGGTGAAGGAACATAGTAA+TGG + chr8_1:32991813-32991832 Msa1190130:intron 40.0%
CGAGAACGTGTTATCTTCAT+CGG + chr8_1:32991939-32991958 Msa1190130:CDS 40.0%
TTGTACATTAATGGTCCTGG+TGG + chr8_1:32992047-32992066 Msa1190130:CDS 40.0%
TGTACATTAATGGTCCTGGT+GGG + chr8_1:32992048-32992067 Msa1190130:CDS 40.0%
CCTATACAATGGGTGCATAT+AGG - chr8_1:32992237-32992256 None:intergenic 40.0%
CCTATATGCACCCATTGTAT+AGG + chr8_1:32992234-32992253 Msa1190130:CDS 40.0%
CATAAGCTTGGCCTATACAA+TGG - chr8_1:32992248-32992267 None:intergenic 40.0%
CATTGTATAGGCCAAGCTTA+TGG + chr8_1:32992246-32992265 Msa1190130:CDS 40.0%
GTTAAACTTGTCATAGCACG+GGG + chr8_1:32992344-32992363 Msa1190130:intron 40.0%
CCCCACCACAAATATGATTA+AGG + chr8_1:32992528-32992547 Msa1190130:intron 40.0%
ACATGTTAGGTACTCACCTT+TGG - chr8_1:32992664-32992683 None:intergenic 40.0%
! CAATCGACAGTTGATATTGC+TGG - chr8_1:32992732-32992751 None:intergenic 40.0%
AATGAAAAAGTTGGCAGGTC+CGG + chr8_1:32992760-32992779 Msa1190130:intron 40.0%
! GGTCCGGTAGTTTGAAATTA+TGG + chr8_1:32992776-32992795 Msa1190130:intron 40.0%
AAGCAGAATGGAGTACAAAG+AGG - chr8_1:32992892-32992911 None:intergenic 40.0%
TGGAGAACAATTCTTGCAAG+AGG - chr8_1:32993072-32993091 None:intergenic 40.0%
! TCTGAGTTGGCTAACAAAAC+AGG + chr8_1:32993281-32993300 Msa1190130:CDS 40.0%
!! CAAGTGACTCTGCTTTTACA+AGG + chr8_1:32993574-32993593 Msa1190130:intron 40.0%
TCTTCGGTGATCTGAAGATA+TGG - chr8_1:32993760-32993779 None:intergenic 40.0%
AGATCACCGAAGACTTGAAA+AGG + chr8_1:32993767-32993786 Msa1190130:intron 40.0%
GATCACCGAAGACTTGAAAA+GGG + chr8_1:32993768-32993787 Msa1190130:intron 40.0%
!! AGGCATTGGTTAAGAACTCT+TGG + chr8_1:32993894-32993913 Msa1190130:exon 40.0%
AAGGAATGGGAGACAAACAG+CGG - chr8_1:32990569-32990588 None:intergenic 45.0%
TGAACGACGATGGAAGGAAT+GGG - chr8_1:32990582-32990601 None:intergenic 45.0%
ATAAACACGGGGGGTTGAAA+CGG - chr8_1:32990634-32990653 None:intergenic 45.0%
TAGGAGGAGAATAAACACGG+GGG - chr8_1:32990644-32990663 None:intergenic 45.0%
CTAGGAGGAGAATAAACACG+GGG - chr8_1:32990645-32990664 None:intergenic 45.0%
CCTAGGAGGAGAATAAACAC+GGG - chr8_1:32990646-32990665 None:intergenic 45.0%
! CAATCCGGAGTAGATTTTGG+TGG - chr8_1:32990756-32990775 None:intergenic 45.0%
AAATGGGCACACGTGAAGAT+TGG - chr8_1:32990784-32990803 None:intergenic 45.0%
CCATTGTGTTTGCATCCAAC+AGG - chr8_1:32991085-32991104 None:intergenic 45.0%
CCTGTTGGATGCAAACACAA+TGG + chr8_1:32991082-32991101 Msa1190130:intron 45.0%
AACGATTGCTTCCAGCATCT+AGG - chr8_1:32991128-32991147 None:intergenic 45.0%
TGATTAAGATCTCTCCTGGC+CGG - chr8_1:32991351-32991370 None:intergenic 45.0%
!! TTTGTGCCCTTACTGGTTTC+TGG - chr8_1:32991650-32991669 None:intergenic 45.0%
ATCCGAATTTGTGCCCTTAC+TGG - chr8_1:32991657-32991676 None:intergenic 45.0%
CAAATTCGGATGATGCCCAT+TGG + chr8_1:32991666-32991685 Msa1190130:CDS 45.0%
CTTCACCAGGTGTTCTATAG+GGG - chr8_1:32991704-32991723 None:intergenic 45.0%
CCTTCACCAGGTGTTCTATA+GGG - chr8_1:32991705-32991724 None:intergenic 45.0%
TCCTTCACCAGGTGTTCTAT+AGG - chr8_1:32991706-32991725 None:intergenic 45.0%
GTACATTAATGGTCCTGGTG+GGG + chr8_1:32992049-32992068 Msa1190130:CDS 45.0%
TCATTACTTACATCCCCACC+AGG - chr8_1:32992065-32992084 None:intergenic 45.0%
GTATCGTAGAGAGACATGCA+TGG - chr8_1:32992195-32992214 None:intergenic 45.0%
ATGCTGCAAGACCATAAGCT+TGG - chr8_1:32992260-32992279 None:intergenic 45.0%
TTGTCATAGCACGGGGTTTA+AGG + chr8_1:32992351-32992370 Msa1190130:intron 45.0%
TCCTACATTACGGGACTGTA+CGG + chr8_1:32992410-32992429 Msa1190130:intron 45.0%
CAAGGATGGCCTTTGTTGAA+TGG + chr8_1:32992459-32992478 Msa1190130:intron 45.0%
TTCTCTACTTCTGTCGCCAA+AGG + chr8_1:32992645-32992664 Msa1190130:intron 45.0%
GACTCAATACTACAGGCACA+AGG - chr8_1:32992957-32992976 None:intergenic 45.0%
ATTGTTCTCCAATCTCCAGC+AGG + chr8_1:32993081-32993100 Msa1190130:CDS 45.0%
AGTGAACTGACCTTCTCAAC+AGG - chr8_1:32993311-32993330 None:intergenic 45.0%
GTCAATGAGCCCATAGTCAA+GGG - chr8_1:32993818-32993837 None:intergenic 45.0%
TGTCAATGAGCCCATAGTCA+AGG - chr8_1:32993819-32993838 None:intergenic 45.0%
GGCTCATTGACAGAATTGTC+AGG + chr8_1:32993827-32993846 Msa1190130:CDS 45.0%
TTGACAGAATTGTCAGGCCA+CGG + chr8_1:32993833-32993852 Msa1190130:CDS 45.0%
TGGGAGACAAACAGCGGATA+GGG - chr8_1:32990563-32990582 None:intergenic 50.0%
ATGGGAGACAAACAGCGGAT+AGG - chr8_1:32990564-32990583 None:intergenic 50.0%
GTGAACGACGATGGAAGGAA+TGG - chr8_1:32990583-32990602 None:intergenic 50.0%
TTGAGGTGAACGACGATGGA+AGG - chr8_1:32990588-32990607 None:intergenic 50.0%
CATGTTGAGGTGAACGACGA+TGG - chr8_1:32990592-32990611 None:intergenic 50.0%
CGTCGTTCACCTCAACATGA+CGG + chr8_1:32990593-32990612 Msa1190130:exon 50.0%
AGGAGGAGAATAAACACGGG+GGG - chr8_1:32990643-32990662 None:intergenic 50.0%
CCCGTGTTTATTCTCCTCCT+AGG + chr8_1:32990643-32990662 Msa1190130:CDS 50.0%
AACCACGATCGTGTTCGTAG+AGG + chr8_1:32991182-32991201 Msa1190130:intron 50.0%
TGTTCGTAGAGGACAAACCG+TGG + chr8_1:32991193-32991212 Msa1190130:intron 50.0%
! TGGGGTCGCAAAAGCATAAG+TGG + chr8_1:32991272-32991291 Msa1190130:intron 50.0%
! TGCTTCCCAAGAGGGTTTTC+CGG + chr8_1:32991329-32991348 Msa1190130:intron 50.0%
CACGACAAACTGTCTCCTGA+AGG - chr8_1:32991394-32991413 None:intergenic 50.0%
! GGGACTCTAGGAGTTCCAAT+GGG - chr8_1:32991684-32991703 None:intergenic 50.0%
GGTGTTCTATAGGGGACTCT+AGG - chr8_1:32991696-32991715 None:intergenic 50.0%
AGAGTCCCCTATAGAACACC+TGG + chr8_1:32991696-32991715 Msa1190130:CDS 50.0%
CCCTATAGAACACCTGGTGA+AGG + chr8_1:32991702-32991721 Msa1190130:CDS 50.0%
AGGAGTCTGCAAGCTTTGCA+TGG - chr8_1:32992217-32992236 None:intergenic 50.0%
GCAGCATTTCTACTTGCAGC+TGG + chr8_1:32992273-32992292 Msa1190130:CDS 50.0%
TCTACTTGCAGCTGGAGAGA+AGG + chr8_1:32992281-32992300 Msa1190130:CDS 50.0%
ACCGTACAGTCCCGTAATGT+AGG - chr8_1:32992414-32992433 None:intergenic 50.0%
AACTGACCTTCTCAACAGGC+TGG - chr8_1:32993307-32993326 None:intergenic 50.0%
CACAAGAGGCCCTTGACTAT+GGG + chr8_1:32993806-32993825 Msa1190130:CDS 50.0%
AAAAGCTGATGCACCTCGCA+AGG + chr8_1:32993861-32993880 Msa1190130:CDS 50.0%
GGGGTTGAAACGGTCGTGTA+GGG - chr8_1:32990624-32990643 None:intergenic 55.0%
GTCCTCTACGAACACGATCG+TGG - chr8_1:32991187-32991206 None:intergenic 55.0%
! GGGGACTCTAGGAGTTCCAA+TGG - chr8_1:32991685-32991704 None:intergenic 55.0%
AACAGGCCAGCCTGTTGAGA+AGG + chr8_1:32993298-32993317 Msa1190130:CDS 55.0%
GCACAAGAGGCCCTTGACTA+TGG + chr8_1:32993805-32993824 Msa1190130:CDS 55.0%
! GCATCAGCTTTTATGCGCCG+TGG - chr8_1:32993853-32993872 None:intergenic 55.0%
!! AAGGATGCTGGCTCAGGCAT+TGG + chr8_1:32993880-32993899 Msa1190130:CDS 55.0%
AGGGTGCGACCGTCATGTTG+AGG - chr8_1:32990605-32990624 None:intergenic 60.0%
GGGGGTTGAAACGGTCGTGT+AGG - chr8_1:32990625-32990644 None:intergenic 60.0%
CCTGGCCGGAAAACCCTCTT+GGG - chr8_1:32991337-32991356 None:intergenic 60.0%
TCCTGGCCGGAAAACCCTCT+TGG - chr8_1:32991338-32991357 None:intergenic 60.0%
GAGCAGCTCCTGCTGGAGAT+TGG - chr8_1:32993092-32993111 None:intergenic 60.0%
GATGCACCTCGCAAGGATGC+TGG + chr8_1:32993868-32993887 Msa1190130:CDS 60.0%
! CCCAAGAGGGTTTTCCGGCC+AGG + chr8_1:32991334-32991353 Msa1190130:intron 65.0%
TCTCCAGCAGGAGCTGCTCG+TGG + chr8_1:32993093-32993112 Msa1190130:CDS 65.0%
CAGCAGGAGCTGCTCGTGGT+CGG + chr8_1:32993097-32993116 Msa1190130:CDS 65.0%
AGCAGGAGCTGCTCGTGGTC+GGG + chr8_1:32993098-32993117 Msa1190130:CDS 65.0%
CCTGAGCCAGCATCCTTGCG+AGG - chr8_1:32993877-32993896 None:intergenic 65.0%
!! CCTCGCAAGGATGCTGGCTC+AGG + chr8_1:32993874-32993893 Msa1190130:CDS 65.0%
CGACCACGAGCAGCTCCTGC+TGG - chr8_1:32993099-32993118 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 32990539 32994168 32990539 ID=Msa1190130;Name=Msa1190130
chr8_1 mRNA 32990539 32994168 32990539 ID=Msa1190130-mRNA-1;Parent=Msa1190130;Name=Msa1190130-mRNA-1;_AED=0.18;_eAED=0.18;_QI=70|1|1|1|1|1|9|262|285
chr8_1 exon 32990539 32990664 32990539 ID=Msa1190130-mRNA-1:exon:11125;Parent=Msa1190130-mRNA-1
chr8_1 exon 32990748 32990791 32990748 ID=Msa1190130-mRNA-1:exon:11126;Parent=Msa1190130-mRNA-1
chr8_1 exon 32990874 32990952 32990874 ID=Msa1190130-mRNA-1:exon:11127;Parent=Msa1190130-mRNA-1
chr8_1 exon 32991638 32991758 32991638 ID=Msa1190130-mRNA-1:exon:11128;Parent=Msa1190130-mRNA-1
chr8_1 exon 32991936 32992073 32991936 ID=Msa1190130-mRNA-1:exon:11129;Parent=Msa1190130-mRNA-1
chr8_1 exon 32992186 32992302 32992186 ID=Msa1190130-mRNA-1:exon:11130;Parent=Msa1190130-mRNA-1
chr8_1 exon 32993051 32993119 32993051 ID=Msa1190130-mRNA-1:exon:11131;Parent=Msa1190130-mRNA-1
chr8_1 exon 32993224 32993319 32993224 ID=Msa1190130-mRNA-1:exon:11132;Parent=Msa1190130-mRNA-1
chr8_1 exon 32993769 32994168 32993769 ID=Msa1190130-mRNA-1:exon:11133;Parent=Msa1190130-mRNA-1
chr8_1 five_prime_UTR 32990539 32990608 32990539 ID=Msa1190130-mRNA-1:five_prime_utr;Parent=Msa1190130-mRNA-1
chr8_1 CDS 32990609 32990664 32990609 ID=Msa1190130-mRNA-1:cds;Parent=Msa1190130-mRNA-1
chr8_1 CDS 32990748 32990791 32990748 ID=Msa1190130-mRNA-1:cds;Parent=Msa1190130-mRNA-1
chr8_1 CDS 32990874 32990952 32990874 ID=Msa1190130-mRNA-1:cds;Parent=Msa1190130-mRNA-1
chr8_1 CDS 32991638 32991758 32991638 ID=Msa1190130-mRNA-1:cds;Parent=Msa1190130-mRNA-1
chr8_1 CDS 32991936 32992073 32991936 ID=Msa1190130-mRNA-1:cds;Parent=Msa1190130-mRNA-1
chr8_1 CDS 32992186 32992302 32992186 ID=Msa1190130-mRNA-1:cds;Parent=Msa1190130-mRNA-1
chr8_1 CDS 32993051 32993119 32993051 ID=Msa1190130-mRNA-1:cds;Parent=Msa1190130-mRNA-1
chr8_1 CDS 32993224 32993319 32993224 ID=Msa1190130-mRNA-1:cds;Parent=Msa1190130-mRNA-1
chr8_1 CDS 32993769 32993906 32993769 ID=Msa1190130-mRNA-1:cds;Parent=Msa1190130-mRNA-1
chr8_1 three_prime_UTR 32993907 32994168 32993907 ID=Msa1190130-mRNA-1:three_prime_utr;Parent=Msa1190130-mRNA-1
Gene Sequence

>Msa1190130

ATGACGGTCGCACCCTACACGACCGTTTCAACCCCCCGTGTTTATTCTCCTCCTAGTGTTTCCACCAAAATCTACTCCGGATTGAAACTCCAATCTTCACGTACTTTTGGAGCGTCTTCAATTTCATCTAATGTAAACGCTCAGTTTTTTGGTAAAGTTAACAAGGTTCTCAATTTCAGGTATGCTAACCAGAAACCAGTAAGGGCACAAATTCGGATGATGCCCATTGGAACTCCTAGAGTCCCCTATAGAACACCTGGTGAAGGAACTTATCAATGGGTTGATTTATGGAATGCCCTTTATCGAGAACGTGTTATCTTCATCGGACAAGAGATAGATGAAGAATTTAGCAATCAAATATTGGCAACATTGCTGTATCTTGACAGTGTAGATAACTCCAAGAAGCTCTACTTGTACATTAATGGTCCTGGTGGGGATCTTACGCCATGCATGTCTCTCTACGATACCATGCAAAGCTTGCAGACTCCTATATGCACCCATTGTATAGGCCAAGCTTATGGTCTTGCAGCATTTCTACTTGCAGCTGGAGAGAAGGGAAATCGTACTGCAATGCCTCTTGCAAGAATTGTTCTCCAATCTCCAGCAGGAGCTGCTCGTGGTCGGGCTGATGACATACAAAATGAAGCAACTGAACTTCTTAGAATCAGAGATTATCTTTTCTCTGAGTTGGCTAACAAAACAGGCCAGCCTGTTGAGAAGATCACCGAAGACTTGAAAAGGGTAAAACGATTTGATGCACAAGAGGCCCTTGACTATGGGCTCATTGACAGAATTGTCAGGCCACGGCGCATAAAAGCTGATGCACCTCGCAAGGATGCTGGCTCAGGCATTGGTTAA

Protein sequence

>Msa1190130

MTVAPYTTVSTPRVYSPPSVSTKIYSGLKLQSSRTFGASSISSNVNAQFFGKVNKVLNFRYANQKPVRAQIRMMPIGTPRVPYRTPGEGTYQWVDLWNALYRERVIFIGQEIDEEFSNQILATLLYLDSVDNSKKLYLYINGPGGDLTPCMSLYDTMQSLQTPICTHCIGQAYGLAAFLLAAGEKGNRTAMPLARIVLQSPAGAARGRADDIQNEATELLRIRDYLFSELANKTGQPVEKITEDLKRVKRFDAQEALDYGLIDRIVRPRRIKADAPRKDAGSGIG*