AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1310090


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1310090 MtrunA17_Chr8g0337211 98.005 401 4 3 1 399 1 399 0.0 797
Msa1310090 MtrunA17_Chr4g0054901 81.461 356 57 3 30 385 52 398 0.0 591
Msa1310090 MtrunA17_Chr5g0412911 25.574 305 201 12 73 359 83 379 5.62e-17 82.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1310090 AT2G44530.2 80.818 391 62 5 17 399 8 393 0.0 631
Msa1310090 AT2G44530.1 80.612 392 62 6 17 399 8 394 0.0 630
Msa1310090 AT2G35390.2 79.189 370 66 4 20 385 35 397 0.0 591
Msa1310090 AT1G32380.1 85.106 329 45 2 59 385 68 394 0.0 587
Msa1310090 AT2G35390.4 81.766 351 55 3 37 385 3 346 0.0 585
Msa1310090 AT2G35390.1 81.766 351 55 3 37 385 3 346 0.0 585
Msa1310090 AT1G32380.2 90.909 286 26 0 100 385 1 286 0.0 550
Msa1310090 AT2G35390.3 77.848 316 59 4 20 331 35 343 6.63e-174 489
Msa1310090 AT1G10700.1 26.048 334 216 15 24 339 42 362 1.63e-17 84.3
Msa1310090 AT2G42910.1 27.329 322 205 15 76 377 23 335 1.52e-14 74.7

Find 107 sgRNAs with CRISPR-Local

Find 333 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTCTTACATGTATTGATTT+TGG 0.117329 8_4:-6641882 Msa1310090:three_prime_UTR
ACTGCAGTCATTCCATATTT+TGG 0.133514 8_4:-6646139 Msa1310090:CDS
AAACACACTGTAGGTATATT+TGG 0.192321 8_4:-6642007 Msa1310090:three_prime_UTR
ATAGGAAATTGCATGTTATA+TGG 0.209711 8_4:-6646347 Msa1310090:intron
CAATCTGTCAATCTGGAAAA+TGG 0.244171 8_4:-6647907 Msa1310090:CDS
CCTCCACTCTGGGCAGTCTA+TGG 0.245181 8_4:-6645153 Msa1310090:CDS
CTACTGATAAGACAGTTAAT+TGG 0.262391 8_4:+6642645 None:intergenic
GCTCTAGCATATCCAAAATA+TGG 0.280293 8_4:+6646127 None:intergenic
ATGTTATATGGGCCTGGATC+TGG 0.313034 8_4:-6646335 Msa1310090:CDS
ATCTGAACAAATAGTCTTGC+TGG 0.323128 8_4:+6644654 None:intergenic
AATTGAACCTTATTCCAGTT+TGG 0.332024 8_4:-6642191 Msa1310090:CDS
GTTTGGCGCCACTAGATAAC+TGG 0.333316 8_4:+6647831 None:intergenic
TCGATGCCCAAACTGGAATA+AGG 0.340609 8_4:+6642184 None:intergenic
ACCCCAAACAGCTCTCTAAA+AGG 0.342830 8_4:+6642047 None:intergenic
ATTGAACCTTATTCCAGTTT+GGG 0.353000 8_4:-6642190 Msa1310090:CDS
CTAAATTCGGAACGAGGATT+AGG 0.357098 8_4:+6648151 None:intergenic
TACTGATAAGACAGTTAATT+GGG 0.362406 8_4:+6642646 None:intergenic
CTTATCAGTAGCAAACCTTC+TGG 0.366216 8_4:-6642633 Msa1310090:CDS
ATGCAAAAGAGCTGCTCCTT+TGG 0.367206 8_4:+6643196 None:intergenic
AATTTGATTGGTGATGTAAA+AGG 0.370527 8_4:-6644359 Msa1310090:CDS
TCAACTGAATATTCAGTTAC+CGG 0.386620 8_4:-6647871 Msa1310090:CDS
TCCAACTGCAAGAGAGTGTC+AGG 0.388820 8_4:-6646270 Msa1310090:CDS
TGTAGTACAATCTGTCAATC+TGG 0.401957 8_4:-6647914 Msa1310090:CDS
CTTGCATGTGACCTCCACTC+TGG 0.408654 8_4:-6645164 Msa1310090:CDS
GCAAGGTAATCGAGTATAAC+AGG 0.410223 8_4:+6644676 None:intergenic
TGTTCAATCGATGCCCAAAC+TGG 0.412006 8_4:+6642177 None:intergenic
TAGGAAATTGCATGTTATAT+GGG 0.416483 8_4:-6646346 Msa1310090:CDS
ACCTTCTGGGCGAGACCATA+TGG 0.425438 8_4:-6642619 Msa1310090:CDS
TCCCGCGAATGAGAATCTTA+TGG 0.430669 8_4:-6646212 Msa1310090:CDS
AGATCATGAATACGAGTGTT+TGG 0.434509 8_4:+6647814 None:intergenic
TGTCCATACACATGATCAAC+TGG 0.436657 8_4:+6645116 None:intergenic
GCAAATTTAATTACAGAAGC+TGG 0.437018 8_4:-6645200 Msa1310090:CDS
AACAAATAGTCTTGCTGGCA+AGG 0.449627 8_4:+6644659 None:intergenic
ATTCCAGTTGATCATGTGTA+TGG 0.449841 8_4:-6645119 Msa1310090:CDS
CTAGCTACACCACCAACATC+TGG 0.450859 8_4:+6644613 None:intergenic
TAGGTATATTTGGAATTCAC+AGG 0.455256 8_4:-6641997 Msa1310090:three_prime_UTR
TTGCATGTGACCTCCACTCT+GGG 0.471838 8_4:-6645163 Msa1310090:CDS
GAAAGAAGATTGAAGTAGAG+TGG 0.474188 8_4:+6648087 None:intergenic
GTAAACGGTTACGCTAAATT+CGG 0.477081 8_4:+6648138 None:intergenic
TACCTGAGCGAGTGCGGGAT+TGG 0.477160 8_4:+6647753 None:intergenic
TTGCAGGTGATGAATTTGAT+TGG 0.480553 8_4:-6644371 Msa1310090:intron
CAAAATTATACTCATCAAGC+GGG 0.484934 8_4:+6641955 None:intergenic
TTATCAGTAGCAAACCTTCT+GGG 0.489700 8_4:-6642632 Msa1310090:CDS
CTGAGCGAGTGCGGGATTGG+CGG 0.495771 8_4:+6647756 None:intergenic
ATGGCGTAACACTCAGTAAA+CGG 0.505357 8_4:+6648123 None:intergenic
TTTGGCAGAAGCTCTCCTGC+AGG 0.516016 8_4:+6646168 None:intergenic
AATTGCATGTTATATGGGCC+TGG 0.517043 8_4:-6646341 Msa1310090:CDS
TGTTATATGGGCCTGGATCT+GGG 0.520595 8_4:-6646334 Msa1310090:CDS
ACAAAATTATACTCATCAAG+CGG 0.522286 8_4:+6641954 None:intergenic
CCCTGACACTCTCTTGCAGT+TGG 0.525864 8_4:+6646269 None:intergenic
TCCATAAGATTCTCATTCGC+GGG 0.527102 8_4:+6646211 None:intergenic
CTCCATAAGATTCTCATTCG+CGG 0.529400 8_4:+6646210 None:intergenic
CTTGACAATCTCTCTATAGC+AGG 0.530606 8_4:+6642731 None:intergenic
TCGTAATGATTGATGCCTGC+AGG 0.530985 8_4:-6646183 Msa1310090:CDS
AATTCGGAACGAGGATTAGG+TGG 0.531429 8_4:+6648154 None:intergenic
AAAAGGAAAGGTAGCAGTGA+TGG 0.532343 8_4:-6644342 Msa1310090:CDS
TGTGATAAACATGAATGTAA+TGG 0.535198 8_4:-6648200 None:intergenic
GTTACTGCAGTATCATAAGC+TGG 0.539533 8_4:+6642128 None:intergenic
GATACTGCAGTAACAAGAAG+TGG 0.540969 8_4:-6642119 Msa1310090:three_prime_UTR
AGGGAGAAACGAGGAGTGAT+CGG 0.542953 8_4:+6648040 None:intergenic
CAACTACTGTTTCAGACTCA+AGG 0.542966 8_4:-6645251 Msa1310090:intron
AGTTGATCATGTGTATGGAC+AGG 0.543298 8_4:-6645114 Msa1310090:intron
AAGTAGTTCTTCTCTGCTAG+TGG 0.549029 8_4:+6642671 None:intergenic
GATGATACCTGAGCGAGTGC+GGG 0.549570 8_4:+6647748 None:intergenic
ATTGTTGATAAAAGACGTCA+TGG 0.550483 8_4:-6644547 Msa1310090:CDS
ATATGCTAGAGCTGATAGAA+AGG 0.559762 8_4:-6646116 Msa1310090:intron
GATTGGTGATGTAAAAGGAA+AGG 0.565352 8_4:-6644354 Msa1310090:CDS
TCATTCGCGGGAGGACATGT+AGG 0.571769 8_4:+6646223 None:intergenic
AAGAGCTGCTCCTTTGGCGA+TGG 0.573536 8_4:+6643202 None:intergenic
GGATGATACCTGAGCGAGTG+CGG 0.580736 8_4:+6647747 None:intergenic
GGGAATTGAACTTGTACCAC+CGG 0.581259 8_4:+6647852 None:intergenic
GCCATATGGTCTCGCCCAGA+AGG 0.586947 8_4:+6642618 None:intergenic
TTCAATTCCCAGTTATCTAG+TGG 0.587565 8_4:-6647839 Msa1310090:CDS
GAGTGGACATGATGAATGAA+TGG 0.590267 8_4:+6648104 None:intergenic
ATAGTTGTCTCGCCAGATGT+TGG 0.591097 8_4:-6644625 Msa1310090:CDS
GACAATCTCTCTATAGCAGG+AGG 0.595468 8_4:+6642734 None:intergenic
GATGACATGATTGATACTGC+TGG 0.599761 8_4:-6644317 Msa1310090:intron
TACTTACGACGACGGCGTTG+CGG 0.602557 8_4:+6648017 None:intergenic
GTTGTCTCGCCAGATGTTGG+TGG 0.603849 8_4:-6644622 Msa1310090:CDS
TTACGACGACGGCGTTGCGG+AGG 0.604069 8_4:+6648020 None:intergenic
GAATATTCAGTTGAACGGTA+CGG 0.605959 8_4:+6647880 None:intergenic
TAACTGAATATTCAGTTGAA+CGG 0.606307 8_4:+6647875 None:intergenic
TACGACGACGGCGTTGCGGA+GGG 0.606369 8_4:+6648021 None:intergenic
TAAGCTGGAACAGCAGAACA+TGG 0.615005 8_4:+6642143 None:intergenic
AACTACTGTTTCAGACTCAA+GGG 0.616461 8_4:-6645250 Msa1310090:intron
CTTATAGGGACCATCGCCAA+AGG 0.620442 8_4:-6643212 Msa1310090:intron
TTTGGCGCCACTAGATAACT+GGG 0.632575 8_4:+6647832 None:intergenic
ATTCGGAACGAGGATTAGGT+GGG 0.637889 8_4:+6648155 None:intergenic
CCATAGACTGCCCAGAGTGG+AGG 0.638297 8_4:+6645153 None:intergenic
ACTGATAAGACAGTTAATTG+GGG 0.644887 8_4:+6642647 None:intergenic
AGGTATATTTGGAATTCACA+GGG 0.645236 8_4:-6641996 Msa1310090:three_prime_UTR
AGCCCATAGACTGCCCAGAG+TGG 0.655210 8_4:+6645150 None:intergenic
TCATGGGCATAATGTTGCCG+AGG 0.655448 8_4:-6644530 Msa1310090:intron
TTGGACATATATCTCCCCAT+CGG 0.659494 8_4:+6646288 None:intergenic
ATAAGATTCTCATTCGCGGG+AGG 0.659940 8_4:+6646214 None:intergenic
ACAATCTCTCTATAGCAGGA+GGG 0.668556 8_4:+6642735 None:intergenic
CAACTGCAAGAGAGTGTCAG+GGG 0.669938 8_4:-6646268 Msa1310090:CDS
CCAACTGCAAGAGAGTGTCA+GGG 0.672047 8_4:-6646269 Msa1310090:CDS
GTTACGCTAAATTCGGAACG+AGG 0.678043 8_4:+6648145 None:intergenic
ACTGAATATTCAGTTACCGG+TGG 0.679249 8_4:-6647868 Msa1310090:CDS
CTGATAAGACAGTTAATTGG+GGG 0.686616 8_4:+6642648 None:intergenic
TTGTTGATAAAAGACGTCAT+GGG 0.699425 8_4:-6644546 Msa1310090:CDS
AAAATTATACTCATCAAGCG+GGG 0.700775 8_4:+6641956 None:intergenic
GCTATAGAGAGATTGTCAAG+CGG 0.702672 8_4:-6642728 Msa1310090:CDS
GAGAGAGTTACTTACGACGA+CGG 0.708624 8_4:+6648009 None:intergenic
AACTGCAAGAGAGTGTCAGG+GGG 0.717564 8_4:-6646267 Msa1310090:CDS
GCGTTGCGGAGGGAGAAACG+AGG 0.728733 8_4:+6648031 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAGTTAAAATATCTTTTA+TGG + chr8_4:6642629-6642648 None:intergenic 10.0%
!! ATAAAATTTCAAATATCATT+AGG + chr8_4:6643582-6643601 None:intergenic 10.0%
!!! TTATTTTTTTACAAAATACT+TGG - chr8_4:6644437-6644456 Msa1310090:intron 10.0%
!! TAATAATTTATTTCAATTTG+TGG - chr8_4:6646898-6646917 Msa1310090:intron 10.0%
!! ATTATATTGAGATGTAATAT+AGG - chr8_4:6642323-6642342 Msa1310090:intron 15.0%
!!! CTATTTAAAGATTTTCTAAT+AGG + chr8_4:6643065-6643084 None:intergenic 15.0%
!! TAAATTGAGATGTAATATAT+TGG + chr8_4:6643180-6643199 None:intergenic 15.0%
!!! AGTTAACTTGATAATTTTTT+AGG - chr8_4:6643247-6643266 Msa1310090:intron 15.0%
!! TAATTAAGTGCTTATATTAT+AGG - chr8_4:6643290-6643309 Msa1310090:intron 15.0%
!! AAGAAAATCAGAAATTTAAA+GGG + chr8_4:6645131-6645150 None:intergenic 15.0%
!! ATATATATCATCAAGAAAAA+GGG + chr8_4:6645970-6645989 None:intergenic 15.0%
!! AATATATATCATCAAGAAAA+AGG + chr8_4:6645971-6645990 None:intergenic 15.0%
!!! GATATATATTATTTTTCTAC+AGG - chr8_4:6645981-6646000 Msa1310090:intron 15.0%
!! AAGACAAATATAATTCAATT+TGG + chr8_4:6646240-6646259 None:intergenic 15.0%
!!! ATTATCTTTAGCTAAAATTT+TGG - chr8_4:6646651-6646670 Msa1310090:intron 15.0%
!!! AAATTGTTAATTTGTCTTAT+AGG - chr8_4:6646771-6646790 Msa1310090:intron 15.0%
!!! AATTGTTAATTTGTCTTATA+GGG - chr8_4:6646772-6646791 Msa1310090:intron 15.0%
!!! TCAAATTATTAAAAGTGTCT+GGG + chr8_4:6642522-6642541 None:intergenic 20.0%
!! TTCATAGTAATTATATGTGT+CGG - chr8_4:6642555-6642574 Msa1310090:intron 20.0%
!! TTTATCCTTATTATCGTATT+CGG + chr8_4:6642664-6642683 None:intergenic 20.0%
!! ACTTATGAACATAAACTTAT+AGG - chr8_4:6642820-6642839 Msa1310090:intron 20.0%
!! AGAATAATAACTGATTAGAA+TGG - chr8_4:6642971-6642990 Msa1310090:intron 20.0%
!!! TTATGTATAAGCTATTTCTA+TGG - chr8_4:6643335-6643354 Msa1310090:intron 20.0%
!!! CTATAAGTTGTTTTCATAAA+TGG - chr8_4:6643395-6643414 Msa1310090:intron 20.0%
!!! TTTCTGATTTGCATTTAAAT+AGG - chr8_4:6643633-6643652 Msa1310090:intron 20.0%
!!! ATAACTTGAATGTCATTTTT+AGG - chr8_4:6644050-6644069 Msa1310090:intron 20.0%
!!! ATGTAAATAAACTACCTTTT+TGG - chr8_4:6644503-6644522 Msa1310090:intron 20.0%
!! GGTCATATAAACAATAAAAT+AGG + chr8_4:6645110-6645129 None:intergenic 20.0%
!! GAAGAAAATCAGAAATTTAA+AGG + chr8_4:6645132-6645151 None:intergenic 20.0%
!!! AAAAGTATATTAACATACCT+CGG + chr8_4:6645488-6645507 None:intergenic 20.0%
!! GAGATTCAAAGTATAAATAA+GGG + chr8_4:6645948-6645967 None:intergenic 20.0%
!!! AAAGTTGCAAGATTTTTTTA+AGG + chr8_4:6646013-6646032 None:intergenic 20.0%
!!! TAACTTAATCTTGTCATTTT+AGG - chr8_4:6646077-6646096 Msa1310090:intron 20.0%
!! TATTAATCAGTCTATTCATT+TGG - chr8_4:6646624-6646643 Msa1310090:intron 20.0%
!! CAAATTAACAATTTATTGAG+CGG + chr8_4:6646765-6646784 None:intergenic 20.0%
!! TTCTGTAAAATAAGTTTAGT+TGG - chr8_4:6647436-6647455 Msa1310090:intron 20.0%
!!! CTATTCAAATACATCAATTT+TGG - chr8_4:6647532-6647551 Msa1310090:intron 20.0%
!! CTAGACTGTATTATTAATAA+TGG - chr8_4:6647600-6647619 Msa1310090:intron 20.0%
! TAACTGAATATTCAGTTGAA+CGG + chr8_4:6642126-6642145 None:intergenic 25.0%
!!! CTCAAATTATTAAAAGTGTC+TGG + chr8_4:6642523-6642542 None:intergenic 25.0%
! GTTACAAAAAATGTCTAGTT+TGG - chr8_4:6642740-6642759 Msa1310090:intron 25.0%
! AAGTAGTAAAGAGTTGTTAT+AGG - chr8_4:6642997-6643016 Msa1310090:intron 25.0%
! TGTTATAGGAATTAGTTAGT+TGG - chr8_4:6643011-6643030 Msa1310090:intron 25.0%
! ATAGTATTCTCTAATGTGAA+AGG - chr8_4:6643133-6643152 Msa1310090:intron 25.0%
! TAGTATTCTCTAATGTGAAA+GGG - chr8_4:6643134-6643153 Msa1310090:intron 25.0%
!!! ATAATTTTTTAGGATCTGCT+TGG - chr8_4:6643257-6643276 Msa1310090:intron 25.0%
! TGAATAGAAATTTCTCTACA+AGG + chr8_4:6643491-6643510 None:intergenic 25.0%
!! AACTTGCTCATGATATAATA+TGG - chr8_4:6643512-6643531 Msa1310090:intron 25.0%
! ATAGGAAATTGCATGTTATA+TGG - chr8_4:6643651-6643670 Msa1310090:intron 25.0%
! TAGGAAATTGCATGTTATAT+GGG - chr8_4:6643652-6643671 Msa1310090:intron 25.0%
!! AATGACTGCAGTAATATTTT+TGG + chr8_4:6643851-6643870 None:intergenic 25.0%
! TTAGGAATGAACATAAGATA+AGG - chr8_4:6644068-6644087 Msa1310090:intron 25.0%
! TAGGAATGAACATAAGATAA+GGG - chr8_4:6644069-6644088 Msa1310090:intron 25.0%
!!! TGCTTATTTTCTTATCAACT+CGG + chr8_4:6644378-6644397 None:intergenic 25.0%
! ATACTGATAATCATTTGGTA+TGG + chr8_4:6644467-6644486 None:intergenic 25.0%
! ATTCATGTACAAGTAATGTT+AGG + chr8_4:6644648-6644667 None:intergenic 25.0%
! AGTTCAGTTTAGTTAAAACA+TGG - chr8_4:6644720-6644739 Msa1310090:intron 25.0%
! AGGTAATAGATTATTGTACA+TGG - chr8_4:6644904-6644923 Msa1310090:intron 25.0%
! TAAAAAATGTTTGCCTGAAT+GGG + chr8_4:6645211-6645230 None:intergenic 25.0%
! ATAAAAAATGTTTGCCTGAA+TGG + chr8_4:6645212-6645231 None:intergenic 25.0%
!!! TTCAGGCAAACATTTTTTAT+TGG - chr8_4:6645212-6645231 Msa1310090:CDS 25.0%
! TTGAAACTGTCAATGTAATT+CGG - chr8_4:6645257-6645276 Msa1310090:intron 25.0%
!! CTTTTATCAACAATTGCTAA+AGG + chr8_4:6645445-6645464 None:intergenic 25.0%
!! ATATGCTTCATTAGCTTAAA+GGG + chr8_4:6645550-6645569 None:intergenic 25.0%
!! AATATGCTTCATTAGCTTAA+AGG + chr8_4:6645551-6645570 None:intergenic 25.0%
!! AAACTTTAGGCTTTTCTTAT+TGG - chr8_4:6645592-6645611 Msa1310090:intron 25.0%
!!! AATTTGATTGGTGATGTAAA+AGG - chr8_4:6645639-6645658 Msa1310090:intron 25.0%
! TTGAGTCCTTATTCATAAAA+AGG - chr8_4:6645864-6645883 Msa1310090:intron 25.0%
!! TCATGACCTTTTTATGAATA+AGG + chr8_4:6645873-6645892 None:intergenic 25.0%
! GGAGATTCAAAGTATAAATA+AGG + chr8_4:6645949-6645968 None:intergenic 25.0%
! AAAAATCTTGCAACTTTACA+AGG - chr8_4:6646016-6646035 Msa1310090:intron 25.0%
! AAGAAAATTCAGAAACTCAA+TGG + chr8_4:6646053-6646072 None:intergenic 25.0%
! TTAGAGATGAAAATCATTCT+AGG - chr8_4:6646555-6646574 Msa1310090:intron 25.0%
! TTGTGGTGAAATGAAAATAA+AGG - chr8_4:6646952-6646971 Msa1310090:intron 25.0%
! TGTGGTGAAATGAAAATAAA+GGG - chr8_4:6646953-6646972 Msa1310090:intron 25.0%
! TATCTATATTCATGACATCT+AGG + chr8_4:6647131-6647150 None:intergenic 25.0%
!!! CTTAGTTGTTTTTTGATACA+AGG - chr8_4:6647200-6647219 Msa1310090:intron 25.0%
! TACTGATAAGACAGTTAATT+GGG + chr8_4:6647355-6647374 None:intergenic 25.0%
! TCATTCTACCAATAGAAAAA+AGG - chr8_4:6647467-6647486 Msa1310090:intron 25.0%
! TAATACAGTCTAGCAATAAA+TGG + chr8_4:6647593-6647612 None:intergenic 25.0%
!! TTTTATAGCAAAAACAGAAG+AGG + chr8_4:6647674-6647693 None:intergenic 25.0%
! TAGCAAAAATTATTGCTCAA+CGG + chr8_4:6647705-6647724 None:intergenic 25.0%
!!! TTTGCTAGTTTTGTTTGTAT+AGG - chr8_4:6647718-6647737 Msa1310090:intron 25.0%
! ATTGCAAGATAAATCTACTT+TGG + chr8_4:6647756-6647775 None:intergenic 25.0%
! ACAAAATTATACTCATCAAG+CGG + chr8_4:6648047-6648066 None:intergenic 25.0%
!!! AGTCTTACATGTATTGATTT+TGG - chr8_4:6648116-6648135 Msa1310090:five_prime_UTR 25.0%
ATAGCTGAATGTGAATTTCT+TGG - chr8_4:6642043-6642062 Msa1310090:three_prime_UTR 30.0%
TCAACTGAATATTCAGTTAC+CGG - chr8_4:6642127-6642146 Msa1310090:three_prime_UTR 30.0%
TCTTTCCGAATACGATAATA+AGG - chr8_4:6642656-6642675 Msa1310090:CDS 30.0%
ATAAACTATTAGGCTCAGTT+TGG + chr8_4:6642792-6642811 None:intergenic 30.0%
AAACTGAGCCTAATAGTTTA+TGG - chr8_4:6642791-6642810 Msa1310090:intron 30.0%
GTGAAGAACCATAAACTATT+AGG + chr8_4:6642802-6642821 None:intergenic 30.0%
ATAGGAATTAGTTAGTTGGT+TGG - chr8_4:6643015-6643034 Msa1310090:intron 30.0%
TAGGAATTAGTTAGTTGGTT+GGG - chr8_4:6643016-6643035 Msa1310090:intron 30.0%
AGTATTCTCTAATGTGAAAG+GGG - chr8_4:6643135-6643154 Msa1310090:intron 30.0%
TGCTCATGATATAATATGGT+TGG - chr8_4:6643516-6643535 Msa1310090:intron 30.0%
ATACAATCTGTATTCAACAC+AGG + chr8_4:6643985-6644004 None:intergenic 30.0%
!! TCTTTTGTTATCAGACCAAA+TGG - chr8_4:6644273-6644292 Msa1310090:intron 30.0%
!! CTTTTGTTATCAGACCAAAT+GGG - chr8_4:6644274-6644293 Msa1310090:intron 30.0%
ACCAAATGATTATCAGTATC+AGG - chr8_4:6644468-6644487 Msa1310090:intron 30.0%
TGTAAAGATGACAATATCCA+AGG - chr8_4:6644550-6644569 Msa1310090:CDS 30.0%
GCAAATTTAATTACAGAAGC+TGG - chr8_4:6644798-6644817 Msa1310090:intron 30.0%
TATTCATAGCATGTTCGTTT+GGG + chr8_4:6644986-6645005 None:intergenic 30.0%
ATATTCATAGCATGTTCGTT+TGG + chr8_4:6644987-6645006 None:intergenic 30.0%
AAAAAATGTTTGCCTGAATG+GGG + chr8_4:6645210-6645229 None:intergenic 30.0%
!!! AGGCAAACATTTTTTATTGG+TGG - chr8_4:6645215-6645234 Msa1310090:CDS 30.0%
GAATTACATTGACAGTTTCA+AGG + chr8_4:6645258-6645277 None:intergenic 30.0%
! ATTGTTGATAAAAGACGTCA+TGG - chr8_4:6645451-6645470 Msa1310090:intron 30.0%
! TTGTTGATAAAAGACGTCAT+GGG - chr8_4:6645452-6645471 Msa1310090:intron 30.0%
! TACTTTTCTTAAGATCTCTC+AGG - chr8_4:6645501-6645520 Msa1310090:intron 30.0%
GTCTAGATTGAAGAAACTTT+AGG - chr8_4:6645579-6645598 Msa1310090:intron 30.0%
AGTCAGCAAAACATATAAAG+AGG + chr8_4:6645829-6645848 None:intergenic 30.0%
! GCTTTTCTTTTCTATTTCGT+AGG - chr8_4:6645913-6645932 Msa1310090:intron 30.0%
TCAAATGAAAAAGTCGCAAT+AGG - chr8_4:6646197-6646216 Msa1310090:CDS 30.0%
! AATAAGAAGGTATGTTGCAA+CGG + chr8_4:6646369-6646388 None:intergenic 30.0%
TCAACGAATGACAAATAAGA+AGG + chr8_4:6646382-6646401 None:intergenic 30.0%
TTATTTGTCATTCGTTGACA+TGG - chr8_4:6646384-6646403 Msa1310090:intron 30.0%
CAATGCATTTATTGATCAAG+TGG - chr8_4:6646410-6646429 Msa1310090:intron 30.0%
GACTGATTAATATAAAGCCA+AGG + chr8_4:6646616-6646635 None:intergenic 30.0%
CAAACAATCAAGAATCTTAG+AGG + chr8_4:6646692-6646711 None:intergenic 30.0%
GTACGTAACAATAGTGAAAA+GGG + chr8_4:6646988-6647007 None:intergenic 30.0%
AGTACGTAACAATAGTGAAA+AGG + chr8_4:6646989-6647008 None:intergenic 30.0%
TGAAGAATGTATTGCAATGA+TGG - chr8_4:6647163-6647182 Msa1310090:intron 30.0%
ACTGATAAGACAGTTAATTG+GGG + chr8_4:6647354-6647373 None:intergenic 30.0%
CTACTGATAAGACAGTTAAT+TGG + chr8_4:6647356-6647375 None:intergenic 30.0%
!!! AGTAGTCTCCTTTTTTCTAT+TGG + chr8_4:6647478-6647497 None:intergenic 30.0%
TTTATGTAAGCATGCAAGTA+TGG + chr8_4:6647503-6647522 None:intergenic 30.0%
ATAAAGTTGAGCATGTAACT+TGG - chr8_4:6647555-6647574 Msa1310090:intron 30.0%
AATTGAACCTTATTCCAGTT+TGG - chr8_4:6647807-6647826 Msa1310090:CDS 30.0%
ATTGAACCTTATTCCAGTTT+GGG - chr8_4:6647808-6647827 Msa1310090:CDS 30.0%
AAACACACTGTAGGTATATT+TGG - chr8_4:6647991-6648010 Msa1310090:intron 30.0%
! TAGGTATATTTGGAATTCAC+AGG - chr8_4:6648001-6648020 Msa1310090:intron 30.0%
! AGGTATATTTGGAATTCACA+GGG - chr8_4:6648002-6648021 Msa1310090:intron 30.0%
AAAATTATACTCATCAAGCG+GGG + chr8_4:6648045-6648064 None:intergenic 30.0%
CAAAATTATACTCATCAAGC+GGG + chr8_4:6648046-6648065 None:intergenic 30.0%
!!! TTGATTTGTGTGACTGTTTT+CGG - chr8_4:6648077-6648096 Msa1310090:CDS 30.0%
GTAAACGGTTACGCTAAATT+CGG + chr8_4:6641863-6641882 None:intergenic 35.0%
GAAAGAAGATTGAAGTAGAG+TGG + chr8_4:6641914-6641933 None:intergenic 35.0%
TGTAGTACAATCTGTCAATC+TGG - chr8_4:6642084-6642103 Msa1310090:three_prime_UTR 35.0%
CAATCTGTCAATCTGGAAAA+TGG - chr8_4:6642091-6642110 Msa1310090:three_prime_UTR 35.0%
GAATATTCAGTTGAACGGTA+CGG + chr8_4:6642121-6642140 None:intergenic 35.0%
TTCAATTCCCAGTTATCTAG+TGG - chr8_4:6642159-6642178 Msa1310090:three_prime_UTR 35.0%
AGATCATGAATACGAGTGTT+TGG + chr8_4:6642187-6642206 None:intergenic 35.0%
! AATCGTCTTCGTATTTTCTC+TGG - chr8_4:6642217-6642236 Msa1310090:intron 35.0%
ACATTCTGTACGATCAAGAT+TGG + chr8_4:6642275-6642294 None:intergenic 35.0%
TAAATATGACCTGACAAGCA+CGG - chr8_4:6642487-6642506 Msa1310090:intron 35.0%
TACCAATCTCACTGTTCATT+AGG - chr8_4:6642944-6642963 Msa1310090:intron 35.0%
ATCCTAATGAACAGTGAGAT+TGG + chr8_4:6642949-6642968 None:intergenic 35.0%
TAAATAGCCCTTCATTTCCT+AGG - chr8_4:6643078-6643097 Msa1310090:intron 35.0%
AGATACTCCTAGGAAATGAA+GGG + chr8_4:6643088-6643107 None:intergenic 35.0%
AAGATACTCCTAGGAAATGA+AGG + chr8_4:6643089-6643108 None:intergenic 35.0%
CAATGTTCAAAGATACTCCT+AGG + chr8_4:6643098-6643117 None:intergenic 35.0%
!!! ATATTGGTTTTCTCCTCCAA+GGG + chr8_4:6643164-6643183 None:intergenic 35.0%
!!! TATATTGGTTTTCTCCTCCA+AGG + chr8_4:6643165-6643184 None:intergenic 35.0%
! GTTTTTCTGAGCTTAACTAC+TGG + chr8_4:6643461-6643480 None:intergenic 35.0%
GAAATTTCTCTACAAGGACA+TGG + chr8_4:6643485-6643504 None:intergenic 35.0%
! TCTTAATTTTTCCCAGATCC+AGG + chr8_4:6643678-6643697 None:intergenic 35.0%
! AAGATAAAACGTTTTGCCGA+TGG - chr8_4:6643694-6643713 Msa1310090:intron 35.0%
! AGATAAAACGTTTTGCCGAT+GGG - chr8_4:6643695-6643714 Msa1310090:intron 35.0%
! ACTGCAGTCATTCCATATTT+TGG - chr8_4:6643859-6643878 Msa1310090:intron 35.0%
GCTCTAGCATATCCAAAATA+TGG + chr8_4:6643874-6643893 None:intergenic 35.0%
ATATGCTAGAGCTGATAGAA+AGG - chr8_4:6643882-6643901 Msa1310090:intron 35.0%
TGATAGAAAAGTCTCCCATT+TGG + chr8_4:6644291-6644310 None:intergenic 35.0%
!! TAAGCTTTTGGGAGAGTTTA+TGG + chr8_4:6644315-6644334 None:intergenic 35.0%
GCCTGATACTGATAATCATT+TGG + chr8_4:6644472-6644491 None:intergenic 35.0%
GATACAGAGATATGCCAAAA+AGG + chr8_4:6644520-6644539 None:intergenic 35.0%
CATATCTCTGTATCATACTG+TGG - chr8_4:6644526-6644545 Msa1310090:intron 35.0%
AACTACTGTTTCAGACTCAA+GGG - chr8_4:6644748-6644767 Msa1310090:intron 35.0%
ATTCCAGTTGATCATGTGTA+TGG - chr8_4:6644879-6644898 Msa1310090:intron 35.0%
CATCACAATTCTGAACAGAA+AGG - chr8_4:6645065-6645084 Msa1310090:intron 35.0%
AATTCTGAACAGAAAGGACA+AGG - chr8_4:6645071-6645090 Msa1310090:intron 35.0%
AAAAATGTTTGCCTGAATGG+GGG + chr8_4:6645209-6645228 None:intergenic 35.0%
TACATTGACAGTTTCAAGGT+AGG + chr8_4:6645254-6645273 None:intergenic 35.0%
! ATCTGAACAAATAGTCTTGC+TGG + chr8_4:6645347-6645366 None:intergenic 35.0%
!!! AGGAGCATCAGATAACTTTT+TGG + chr8_4:6645425-6645444 None:intergenic 35.0%
! TTGGATGAATCTCATTTTGC+AGG - chr8_4:6645611-6645630 Msa1310090:intron 35.0%
TTGCAGGTGATGAATTTGAT+TGG - chr8_4:6645627-6645646 Msa1310090:intron 35.0%
!! GATTGGTGATGTAAAAGGAA+AGG - chr8_4:6645644-6645663 Msa1310090:intron 35.0%
! TTCAGAAACTCAATGGATTC+AGG + chr8_4:6646046-6646065 None:intergenic 35.0%
ACAATAGTGAGATCCTAATC+AGG - chr8_4:6646112-6646131 Msa1310090:intron 35.0%
! CATTCCTTGACACAGTTTTA+AGG - chr8_4:6646282-6646301 Msa1310090:CDS 35.0%
ATCTATTGAGATAGACGCAA+TGG - chr8_4:6646306-6646325 Msa1310090:CDS 35.0%
TCTATTGAGATAGACGCAAT+GGG - chr8_4:6646307-6646326 Msa1310090:CDS 35.0%
ACCTGACAGATTAAACATGA+TGG - chr8_4:6646584-6646603 Msa1310090:intron 35.0%
ACCATCATGTTTAATCTGTC+AGG + chr8_4:6646588-6646607 None:intergenic 35.0%
! ATCTTAGAGGTATATCGAAG+CGG + chr8_4:6646679-6646698 None:intergenic 35.0%
CACTTGAATCGTGTTAATTG+TGG - chr8_4:6646935-6646954 Msa1310090:intron 35.0%
TAGATTGATCTCAAGAGTTG+TGG - chr8_4:6647020-6647039 Msa1310090:intron 35.0%
AGAGTGTGTTAAGTATGTCT+GGG - chr8_4:6647045-6647064 Msa1310090:intron 35.0%
CTGATAAGACAGTTAATTGG+GGG + chr8_4:6647353-6647372 None:intergenic 35.0%
TTATCAGTAGCAAACCTTCT+GGG - chr8_4:6647366-6647385 Msa1310090:intron 35.0%
! TGCTCTGTTTTATCTTTGTC+AGG - chr8_4:6647780-6647799 Msa1310090:CDS 35.0%
! GCTCTGTTTTATCTTTGTCA+GGG - chr8_4:6647781-6647800 Msa1310090:CDS 35.0%
!! ATACCTTTTAGAGAGCTGTT+TGG - chr8_4:6647948-6647967 Msa1310090:intron 35.0%
!! TACCTTTTAGAGAGCTGTTT+GGG - chr8_4:6647949-6647968 Msa1310090:intron 35.0%
GTACTTGAAAAACACACTGT+AGG - chr8_4:6647982-6648001 Msa1310090:intron 35.0%
CTAAATTCGGAACGAGGATT+AGG + chr8_4:6641850-6641869 None:intergenic 40.0%
ATGGCGTAACACTCAGTAAA+CGG + chr8_4:6641878-6641897 None:intergenic 40.0%
GAGTGGACATGATGAATGAA+TGG + chr8_4:6641897-6641916 None:intergenic 40.0%
ACTGAATATTCAGTTACCGG+TGG - chr8_4:6642130-6642149 Msa1310090:three_prime_UTR 40.0%
AGCTGAGTCAGATTATAGTG+CGG - chr8_4:6642376-6642395 Msa1310090:intron 40.0%
AAATATGACCTGACAAGCAC+GGG - chr8_4:6642488-6642507 Msa1310090:intron 40.0%
TATTAGGCTCAGTTTGGCAA+GGG + chr8_4:6642786-6642805 None:intergenic 40.0%
AATTGCATGTTATATGGGCC+TGG - chr8_4:6643657-6643676 Msa1310090:intron 40.0%
! GATAAAACGTTTTGCCGATG+GGG - chr8_4:6643696-6643715 Msa1310090:intron 40.0%
TTGGACATATATCTCCCCAT+CGG + chr8_4:6643713-6643732 None:intergenic 40.0%
TCCATAAGATTCTCATTCGC+GGG + chr8_4:6643790-6643809 None:intergenic 40.0%
CTCCATAAGATTCTCATTCG+CGG + chr8_4:6643791-6643810 None:intergenic 40.0%
TAGCTAGCGGTTATCAGTAA+TGG + chr8_4:6644231-6644250 None:intergenic 40.0%
AACGCAAATGAAGTAGCTAG+CGG + chr8_4:6644244-6644263 None:intergenic 40.0%
TCCCAAAAGCTTAACCTGTT+GGG - chr8_4:6644322-6644341 Msa1310090:CDS 40.0%
! ACCCAACAGGTTAAGCTTTT+GGG + chr8_4:6644326-6644345 None:intergenic 40.0%
! AACCCAACAGGTTAAGCTTT+TGG + chr8_4:6644327-6644346 None:intergenic 40.0%
AAGCTTAACCTGTTGGGTTA+AGG - chr8_4:6644328-6644347 Msa1310090:CDS 40.0%
TGGTCTAATCACTAATGCCT+TGG + chr8_4:6644570-6644589 None:intergenic 40.0%
AGATGCATGTAGAACGTGAT+TGG + chr8_4:6644590-6644609 None:intergenic 40.0%
CAACTACTGTTTCAGACTCA+AGG - chr8_4:6644747-6644766 Msa1310090:intron 40.0%
TGTCCATACACATGATCAAC+TGG + chr8_4:6644885-6644904 None:intergenic 40.0%
AGTTGATCATGTGTATGGAC+AGG - chr8_4:6644884-6644903 Msa1310090:intron 40.0%
AAACATTCTTACCCCCATTC+AGG - chr8_4:6645195-6645214 Msa1310090:CDS 40.0%
GCAAGGTAATCGAGTATAAC+AGG + chr8_4:6645325-6645344 None:intergenic 40.0%
! AACAAATAGTCTTGCTGGCA+AGG + chr8_4:6645342-6645361 None:intergenic 40.0%
AAAAGGAAAGGTAGCAGTGA+TGG - chr8_4:6645656-6645675 Msa1310090:intron 40.0%
GATGACATGATTGATACTGC+TGG - chr8_4:6645681-6645700 Msa1310090:intron 40.0%
TGTCTCTATGACCCTTAGAT+CGG - chr8_4:6645748-6645767 Msa1310090:intron 40.0%
TGTATTTCCATGTGCAATGC+AGG - chr8_4:6646168-6646187 Msa1310090:CDS 40.0%
ATAACATCCTGCATTGCACA+TGG + chr8_4:6646178-6646197 None:intergenic 40.0%
GATGCCTTAAAACTGTGTCA+AGG + chr8_4:6646289-6646308 None:intergenic 40.0%
!! GTGCATTGCACTCTAAAGTT+TGG + chr8_4:6646516-6646535 None:intergenic 40.0%
AAACATGATGGTTGCTTCCT+TGG - chr8_4:6646596-6646615 Msa1310090:intron 40.0%
AATTCTCTCTTGCTACAGCT+TGG - chr8_4:6646716-6646735 Msa1310090:intron 40.0%
! CAGCTCTTTTGCATCAAGAA+GGG - chr8_4:6646811-6646830 Msa1310090:intron 40.0%
! AGCTCTTTTGCATCAAGAAG+GGG - chr8_4:6646812-6646831 Msa1310090:intron 40.0%
! AATTTGTGGTTTGTGCTGCT+AGG - chr8_4:6646912-6646931 Msa1310090:intron 40.0%
! GAGAGTGTGTTAAGTATGTC+TGG - chr8_4:6647044-6647063 Msa1310090:intron 40.0%
ACAATCTCTCTATAGCAGGA+GGG + chr8_4:6647266-6647285 None:intergenic 40.0%
CTTGACAATCTCTCTATAGC+AGG + chr8_4:6647270-6647289 None:intergenic 40.0%
GCTATAGAGAGATTGTCAAG+CGG - chr8_4:6647270-6647289 Msa1310090:intron 40.0%
AAGTAGTTCTTCTCTGCTAG+TGG + chr8_4:6647330-6647349 None:intergenic 40.0%
CTTATCAGTAGCAAACCTTC+TGG - chr8_4:6647365-6647384 Msa1310090:intron 40.0%
! CTGTTTTATCTTTGTCAGGG+TGG - chr8_4:6647784-6647803 Msa1310090:CDS 40.0%
GTTACTGCAGTATCATAAGC+TGG + chr8_4:6647873-6647892 None:intergenic 40.0%
GATACTGCAGTAACAAGAAG+TGG - chr8_4:6647879-6647898 Msa1310090:CDS 40.0%
!! ACCTTTTAGAGAGCTGTTTG+GGG - chr8_4:6647950-6647969 Msa1310090:intron 40.0%
ATTCGGAACGAGGATTAGGT+GGG + chr8_4:6641846-6641865 None:intergenic 45.0%
AATTCGGAACGAGGATTAGG+TGG + chr8_4:6641847-6641866 None:intergenic 45.0%
GTTACGCTAAATTCGGAACG+AGG + chr8_4:6641856-6641875 None:intergenic 45.0%
GAGAGAGTTACTTACGACGA+CGG + chr8_4:6641992-6642011 None:intergenic 45.0%
GGGAATTGAACTTGTACCAC+CGG + chr8_4:6642149-6642168 None:intergenic 45.0%
TTTGGCGCCACTAGATAACT+GGG + chr8_4:6642169-6642188 None:intergenic 45.0%
AGTCAGATTATAGTGCGGTG+CGG - chr8_4:6642381-6642400 Msa1310090:intron 45.0%
TGGCAACTAGCTATGAAGCA+TGG + chr8_4:6642609-6642628 None:intergenic 45.0%
CTATTAGGCTCAGTTTGGCA+AGG + chr8_4:6642787-6642806 None:intergenic 45.0%
AATGTGAAAGGGGAAACCCT+TGG - chr8_4:6643145-6643164 Msa1310090:intron 45.0%
! AAGCACTTGACAGTGGGTTT+GGG + chr8_4:6643435-6643454 None:intergenic 45.0%
! TAAGCACTTGACAGTGGGTT+TGG + chr8_4:6643436-6643455 None:intergenic 45.0%
TGGTCTAAGCACTTGACAGT+GGG + chr8_4:6643441-6643460 None:intergenic 45.0%
ATGTTATATGGGCCTGGATC+TGG - chr8_4:6643663-6643682 Msa1310090:intron 45.0%
TGTTATATGGGCCTGGATCT+GGG - chr8_4:6643664-6643683 Msa1310090:intron 45.0%
ATAAGATTCTCATTCGCGGG+AGG + chr8_4:6643787-6643806 None:intergenic 45.0%
TCCCGCGAATGAGAATCTTA+TGG - chr8_4:6643786-6643805 Msa1310090:intron 45.0%
TCGTAATGATTGATGCCTGC+AGG - chr8_4:6643815-6643834 Msa1310090:intron 45.0%
! CGGTTATCAGTAATGGAGCA+TGG + chr8_4:6644224-6644243 None:intergenic 45.0%
CTCCCAAAAGCTTAACCTGT+TGG - chr8_4:6644321-6644340 Msa1310090:CDS 45.0%
TACATGAGCCTTAACCCAAC+AGG + chr8_4:6644339-6644358 None:intergenic 45.0%
! TGGGTTGAACAGTACACAAG+TGG + chr8_4:6644967-6644986 None:intergenic 45.0%
GGTAATCGAGTATAACAGGC+TGG + chr8_4:6645321-6645340 None:intergenic 45.0%
ATAGTTGTCTCGCCAGATGT+TGG - chr8_4:6645373-6645392 Msa1310090:intron 45.0%
!! GTTTTGAGCCACCGATCTAA+GGG + chr8_4:6645762-6645781 None:intergenic 45.0%
AGCGGATCACTGATAAGACT+TGG + chr8_4:6646747-6646766 None:intergenic 45.0%
ATGCAAAAGAGCTGCTCCTT+TGG + chr8_4:6646805-6646824 None:intergenic 45.0%
! GCAGCTCTTTTGCATCAAGA+AGG - chr8_4:6646810-6646829 Msa1310090:intron 45.0%
AAGTATGTCTGGGTACGAGT+TGG - chr8_4:6647055-6647074 Msa1310090:intron 45.0%
GACAATCTCTCTATAGCAGG+AGG + chr8_4:6647267-6647286 None:intergenic 45.0%
TCGATGCCCAAACTGGAATA+AGG + chr8_4:6647817-6647836 None:intergenic 45.0%
TGTTCAATCGATGCCCAAAC+TGG + chr8_4:6647824-6647843 None:intergenic 45.0%
TAAGCTGGAACAGCAGAACA+TGG + chr8_4:6647858-6647877 None:intergenic 45.0%
ACCCCAAACAGCTCTCTAAA+AGG + chr8_4:6647954-6647973 None:intergenic 45.0%
!! TTTCAAAAAATAAAATAAAA+TGG + chr8_4:6642877-6642896 None:intergenic 5.0%
!!! AACTATAATATATTTTTTAT+TGG - chr8_4:6643929-6643948 Msa1310090:intron 5.0%
!!! AAAAAATAAATATATTTTTC+TGG + chr8_4:6644426-6644445 None:intergenic 5.0%
AGGGAGAAACGAGGAGTGAT+CGG + chr8_4:6641961-6641980 None:intergenic 50.0%
AACGAACGCGAAGAGAGAGA+GGG + chr8_4:6642016-6642035 None:intergenic 50.0%
AAACGAACGCGAAGAGAGAG+AGG + chr8_4:6642017-6642036 None:intergenic 50.0%
GTTTGGCGCCACTAGATAAC+TGG + chr8_4:6642170-6642189 None:intergenic 50.0%
TATGAAGCATGGACCCTCCT+CGG + chr8_4:6642598-6642617 None:intergenic 50.0%
CTGGTCTAAGCACTTGACAG+TGG + chr8_4:6643442-6643461 None:intergenic 50.0%
!! TCCAACTGCAAGAGAGTGTC+AGG - chr8_4:6643728-6643747 Msa1310090:intron 50.0%
!! CCAACTGCAAGAGAGTGTCA+GGG - chr8_4:6643729-6643748 Msa1310090:intron 50.0%
!! CAACTGCAAGAGAGTGTCAG+GGG - chr8_4:6643730-6643749 Msa1310090:intron 50.0%
!! AACTGCAAGAGAGTGTCAGG+GGG - chr8_4:6643731-6643750 Msa1310090:intron 50.0%
!! TTTCTGGCTGAGACAGTCAC+TGG + chr8_4:6644410-6644429 None:intergenic 50.0%
TTGCATGTGACCTCCACTCT+GGG - chr8_4:6644835-6644854 Msa1310090:intron 50.0%
CGAGTATAACAGGCTGGTAG+TGG + chr8_4:6645315-6645334 None:intergenic 50.0%
CTAGCTACACCACCAACATC+TGG + chr8_4:6645388-6645407 None:intergenic 50.0%
TCATGGGCATAATGTTGCCG+AGG - chr8_4:6645468-6645487 Msa1310090:intron 50.0%
CTCTATGACCCTTAGATCGG+TGG - chr8_4:6645751-6645770 Msa1310090:intron 50.0%
!! CGTTTTGAGCCACCGATCTA+AGG + chr8_4:6645763-6645782 None:intergenic 50.0%
GAGATCCTAATCAGGTACGC+TGG - chr8_4:6646120-6646139 Msa1310090:CDS 50.0%
CTTATAGGGACCATCGCCAA+AGG - chr8_4:6646786-6646805 Msa1310090:intron 50.0%
!! GCACAACACACGCTGTTTTC+AGG - chr8_4:6646853-6646872 Msa1310090:intron 50.0%
GTCATCGTGAACACGCCATA+TGG + chr8_4:6647397-6647416 None:intergenic 50.0%
TACTTACGACGACGGCGTTG+CGG + chr8_4:6641984-6642003 None:intergenic 55.0%
GATGATACCTGAGCGAGTGC+GGG + chr8_4:6642253-6642272 None:intergenic 55.0%
GGATGATACCTGAGCGAGTG+CGG + chr8_4:6642254-6642273 None:intergenic 55.0%
GTGAAAGGGGAAACCCTTGG+AGG - chr8_4:6643148-6643167 Msa1310090:CDS 55.0%
CCCTGACACTCTCTTGCAGT+TGG + chr8_4:6643732-6643751 None:intergenic 55.0%
TCATTCGCGGGAGGACATGT+AGG + chr8_4:6643778-6643797 None:intergenic 55.0%
TTTGGCAGAAGCTCTCCTGC+AGG + chr8_4:6643833-6643852 None:intergenic 55.0%
CTTGCATGTGACCTCCACTC+TGG - chr8_4:6644834-6644853 Msa1310090:intron 55.0%
CTCCACTCTGGGCAGTCTAT+GGG - chr8_4:6644846-6644865 Msa1310090:intron 55.0%
GTTGTCTCGCCAGATGTTGG+TGG - chr8_4:6645376-6645395 Msa1310090:intron 55.0%
CAGGTCCAGCGTACCTGATT+AGG + chr8_4:6646128-6646147 None:intergenic 55.0%
ATCTCCAGCACAGCCTTGAC+AGG + chr8_4:6646147-6646166 None:intergenic 55.0%
AAGAGCTGCTCCTTTGGCGA+TGG + chr8_4:6646799-6646818 None:intergenic 55.0%
ACCTTCTGGGCGAGACCATA+TGG - chr8_4:6647379-6647398 Msa1310090:intron 55.0%
TACCTGAGCGAGTGCGGGAT+TGG + chr8_4:6642248-6642267 None:intergenic 60.0%
TGTCAGTGCCCGTGCTTGTC+AGG + chr8_4:6642499-6642518 None:intergenic 60.0%
ACACCGACACGTCTAAGCCG+AGG - chr8_4:6642578-6642597 Msa1310090:intron 60.0%
CCTCCTCGGCTTAGACGTGT+CGG + chr8_4:6642584-6642603 None:intergenic 60.0%
CGACACGTCTAAGCCGAGGA+GGG - chr8_4:6642582-6642601 Msa1310090:intron 60.0%
CCATAGACTGCCCAGAGTGG+AGG + chr8_4:6644848-6644867 None:intergenic 60.0%
CCTCCACTCTGGGCAGTCTA+TGG - chr8_4:6644845-6644864 Msa1310090:intron 60.0%
AGCCCATAGACTGCCCAGAG+TGG + chr8_4:6644851-6644870 None:intergenic 60.0%
CAGGTACGCTGGACCTGTCA+AGG - chr8_4:6646131-6646150 Msa1310090:CDS 60.0%
TGGACCTGTCAAGGCTGTGC+TGG - chr8_4:6646140-6646159 Msa1310090:CDS 60.0%
GCCATATGGTCTCGCCCAGA+AGG + chr8_4:6647383-6647402 None:intergenic 60.0%
GCGTTGCGGAGGGAGAAACG+AGG + chr8_4:6641970-6641989 None:intergenic 65.0%
TACGACGACGGCGTTGCGGA+GGG + chr8_4:6641980-6641999 None:intergenic 65.0%
TTACGACGACGGCGTTGCGG+AGG + chr8_4:6641981-6642000 None:intergenic 65.0%
CTGAGCGAGTGCGGGATTGG+CGG + chr8_4:6642245-6642264 None:intergenic 65.0%
CCGACACGTCTAAGCCGAGG+AGG - chr8_4:6642581-6642600 Msa1310090:intron 65.0%
CGCCAATCCCGCACTCGCTC+AGG - chr8_4:6642243-6642262 Msa1310090:intron 70.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 6641812 6648208 6641812 ID=Msa1310090;Name=Msa1310090
chr8_4 mRNA 6641812 6648208 6641812 ID=Msa1310090-mRNA-1;Parent=Msa1310090;Name=Msa1310090-mRNA-1;_AED=0.19;_eAED=0.19;_QI=95|0.77|0.9|1|1|1|10|368|399
chr8_4 exon 6641812 6642218 6641812 ID=Msa1310090-mRNA-1:exon:2268;Parent=Msa1310090-mRNA-1
chr8_4 exon 6642275 6642280 6642275 ID=Msa1310090-mRNA-1:exon:2267;Parent=Msa1310090-mRNA-1
chr8_4 exon 6642598 6642757 6642598 ID=Msa1310090-mRNA-1:exon:2266;Parent=Msa1310090-mRNA-1
chr8_4 exon 6643146 6643227 6643146 ID=Msa1310090-mRNA-1:exon:2265;Parent=Msa1310090-mRNA-1
chr8_4 exon 6644318 6644387 6644318 ID=Msa1310090-mRNA-1:exon:2264;Parent=Msa1310090-mRNA-1
chr8_4 exon 6644531 6644698 6644531 ID=Msa1310090-mRNA-1:exon:2263;Parent=Msa1310090-mRNA-1
chr8_4 exon 6645115 6645258 6645115 ID=Msa1310090-mRNA-1:exon:2262;Parent=Msa1310090-mRNA-1
chr8_4 exon 6646117 6646365 6646117 ID=Msa1310090-mRNA-1:exon:2261;Parent=Msa1310090-mRNA-1
chr8_4 exon 6647756 6647947 6647756 ID=Msa1310090-mRNA-1:exon:2260;Parent=Msa1310090-mRNA-1
chr8_4 exon 6648024 6648208 6648024 ID=Msa1310090-mRNA-1:exon:2259;Parent=Msa1310090-mRNA-1
chr8_4 five_prime_UTR 6648114 6648208 6648114 ID=Msa1310090-mRNA-1:five_prime_utr;Parent=Msa1310090-mRNA-1
chr8_4 CDS 6648024 6648113 6648024 ID=Msa1310090-mRNA-1:cds;Parent=Msa1310090-mRNA-1
chr8_4 CDS 6647756 6647947 6647756 ID=Msa1310090-mRNA-1:cds;Parent=Msa1310090-mRNA-1
chr8_4 CDS 6646117 6646365 6646117 ID=Msa1310090-mRNA-1:cds;Parent=Msa1310090-mRNA-1
chr8_4 CDS 6645115 6645258 6645115 ID=Msa1310090-mRNA-1:cds;Parent=Msa1310090-mRNA-1
chr8_4 CDS 6644531 6644698 6644531 ID=Msa1310090-mRNA-1:cds;Parent=Msa1310090-mRNA-1
chr8_4 CDS 6644318 6644387 6644318 ID=Msa1310090-mRNA-1:cds;Parent=Msa1310090-mRNA-1
chr8_4 CDS 6643146 6643227 6643146 ID=Msa1310090-mRNA-1:cds;Parent=Msa1310090-mRNA-1
chr8_4 CDS 6642598 6642757 6642598 ID=Msa1310090-mRNA-1:cds;Parent=Msa1310090-mRNA-1
chr8_4 CDS 6642275 6642280 6642275 ID=Msa1310090-mRNA-1:cds;Parent=Msa1310090-mRNA-1
chr8_4 CDS 6642180 6642218 6642180 ID=Msa1310090-mRNA-1:cds;Parent=Msa1310090-mRNA-1
chr8_4 three_prime_UTR 6641812 6642179 6641812 ID=Msa1310090-mRNA-1:three_prime_utr;Parent=Msa1310090-mRNA-1
Gene Sequence

>Msa1310090

ATGTCCACTCTACTTCAATCTTCTTTCATTTCTTCTTCGTCTTCATTCTCTCCGATCACTCCTCGTTTCTCCCTCCGCAACGCCGTCGTCAGATGTAATAATGTAGTACAATCTGTCAATCTGGAAAATGGAAAACCGTACCGTTCAACTGAATATTCAGTTACCGGTGGTACAAGTTCAATTCCCAGTTATCTAGTGGCGCCAAACACTCGTATTCATGATCTCGTTAACAAGAATCGTCTTCGTATTTTCTCTGGCACCGCCAATCCCGCACTCGCTCAGGAAATTGCATGTTATATGGGCCTGGATCTGGGAAAAATTAAGATAAAACGTTTTGCCGATGGGGAGATATATGTCCAACTGCAAGAGAGTGTCAGGGGGTGTGATGTGTTTCTTGTGCAGCCTACATGTCCTCCCGCGAATGAGAATCTTATGGAGCTTCTCGTAATGATTGATGCCTGCAGGAGAGCTTCTGCCAAAAATATTACTGCAGTCATTCCATATTTTGGATATGCTAGAGCTGATAGAAAGACTCAAGGGCGTGAATCAATTGCTGCTAAGCTTGTAGCAAATTTAATTACAGAAGCTGGTGCAAATCGTGTTCTTGCATGTGACCTCCACTCTGGGCAGTCTATGGGCTACTTCGATATTCCAGTTGATCATGTGTATGGACAGCCTGTTATACTCGATTACCTTGCCAGCAAGACTATTTGTTCAGATGATTTGATAGTTGTCTCGCCAGATGTTGGTGGTGTAGCTAGAGCACGTGCTTTTGCCAAAAAGTTATCTGATGCTCCTTTAGCAATTGTTGATAAAAGACGTCATGGGCATAATGTTGCCGAGGTGATGAATTTGATTGGTGATGTAAAAGGAAAGGTAGCAGTGATGGTAGATGACATGATTGATACTGCTGGGACCATCGCCAAAGGAGCAGCTCTTTTGCATCAAGAAGGGGCAAGAGAAGTCTATGCATGCACAACACACGCTGTTTTCAGCCCTCCTGCTATAGAGAGATTGTCAAGCGGTTTATTTCAAGAAGTTATCATAACTAATACAATTCCACTAGCAGAGAAGAACTACTTCCCCCAATTAACTGTCTTATCAGTAGCAAACCTTCTGGGCGAGACCATATGGCGTGTTCACGATGACTGCTCAGATAGAGGTGGAATTGAACCTTATTCCAGTTTGGGCATCGATTGA

Protein sequence

>Msa1310090

MSTLLQSSFISSSSSFSPITPRFSLRNAVVRCNNVVQSVNLENGKPYRSTEYSVTGGTSSIPSYLVAPNTRIHDLVNKNRLRIFSGTANPALAQEIACYMGLDLGKIKIKRFADGEIYVQLQESVRGCDVFLVQPTCPPANENLMELLVMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASKTICSDDLIVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACTTHAVFSPPAIERLSSGLFQEVIITNTIPLAEKNYFPQLTVLSVANLLGETIWRVHDDCSDRGGIEPYSSLGID*