AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0127070


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0127070 MtrunA17_Chr1g0186031 95.816 239 10 0 1 239 1 239 8.83e-175 479
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0127070 AT2G33255.1 68.161 223 69 1 19 239 23 245 1.31e-115 331

Find 84 sgRNAs with CRISPR-Local

Find 209 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTAAGCTTTATTGACTTCTT+AGG 0.133455 1_3:+56283449 Msa0127070:three_prime_UTR
AACCACTTACATCATCTTTA+AGG 0.144402 1_3:-56282545 None:intergenic
AAATGCTGATGTCAGATTTC+TGG 0.175133 1_3:-56280712 None:intergenic
TTACCTATTACTAGTTTCTT+TGG 0.219683 1_3:+56283534 Msa0127070:three_prime_UTR
ATTTATTCCACCAACGCTTT+GGG 0.274021 1_3:+56281238 Msa0127070:CDS
GAAATCGACATTAGCATATT+CGG 0.286039 1_3:-56283157 None:intergenic
TTCTTGATTCAAAGAAAATT+AGG 0.286367 1_3:+56281178 Msa0127070:CDS
TACTGCATATCTGTTCTCTT+TGG 0.304882 1_3:+56282484 Msa0127070:CDS
ATTTACTACCAGGCATGATT+TGG 0.318202 1_3:-56281065 None:intergenic
GATTTATTCCACCAACGCTT+TGG 0.319915 1_3:+56281237 Msa0127070:CDS
ATCATAAACCACAAAATAAA+TGG 0.325555 1_3:-56283277 None:intergenic
TGATGTCAGATTTCTGGTTT+TGG 0.332123 1_3:-56280706 None:intergenic
GACGCCACGGAGGCGCGTTT+TGG 0.336627 1_3:-56280830 None:intergenic
AATCCAAAGAAACTAGTAAT+AGG 0.348757 1_3:-56283537 None:intergenic
ACTGCATATCTGTTCTCTTT+GGG 0.358743 1_3:+56282485 Msa0127070:CDS
AATAATGTTGTATCATATCT+TGG 0.360992 1_3:+56283417 Msa0127070:three_prime_UTR
AAAATGAGCAATGGTATCAT+AGG 0.361847 1_3:-56281019 None:intergenic
CCGACCATTACTACTTCATT+TGG 0.368014 1_3:-56282516 None:intergenic
AGGGAAGTTACCTTGAAATC+TGG 0.368119 1_3:-56283183 None:intergenic
AAATCGACATTAGCATATTC+GGG 0.370379 1_3:-56283156 None:intergenic
TAAGCTTTATTGACTTCTTA+GGG 0.375413 1_3:+56283450 Msa0127070:three_prime_UTR
GGAGCTGGATCAGGTTTATA+AGG 0.385703 1_3:-56282459 None:intergenic
TGGTTTATGATATAAGAATC+TGG 0.392922 1_3:+56283289 Msa0127070:three_prime_UTR
CGATTTCAAACCAGATTTCA+AGG 0.418712 1_3:+56283173 Msa0127070:CDS
ACTTGTCTGCTTGATCAAAC+TGG 0.423784 1_3:+56283120 Msa0127070:CDS
TTTATTCCTCACCTCATGTA+AGG 0.429471 1_3:+56283341 Msa0127070:three_prime_UTR
TACTAGTTTCTTTGGATTCG+CGG 0.435189 1_3:+56283542 Msa0127070:three_prime_UTR
ATTGCTTGTGGAGGGCGAGC+AGG 0.444789 1_3:+56283090 Msa0127070:CDS
TTAGGAGGGGTTTGATTACA+AGG 0.448691 1_3:+56281196 Msa0127070:CDS
CAAATGAAGTAGTAATGGTC+GGG 0.454036 1_3:+56282517 Msa0127070:CDS
TGCAGTAGTGGAGCTGGATC+AGG 0.459438 1_3:-56282468 None:intergenic
ATCGATTCCAGCAGGGTTTG+AGG 0.464862 1_3:-56280950 None:intergenic
TGCTAATAACTGATCAGCCT+TGG 0.470079 1_3:-56283635 None:intergenic
GAGGAGGTGACATCTACATT+TGG 0.473312 1_3:+56283311 Msa0127070:three_prime_UTR
TTCAAGATATCGATTCCAGC+AGG 0.477823 1_3:-56280958 None:intergenic
AACTGACCCCAAAGCGTTGG+TGG 0.483746 1_3:-56281245 None:intergenic
CGCGCAATATCGTGTCAAAC+GGG 0.489752 1_3:-56283601 None:intergenic
CAGATATGCAGTAGTGGAGC+TGG 0.491301 1_3:-56282474 None:intergenic
TTAGCATCACCGTATGTGCT+TGG 0.498488 1_3:+56283652 Msa0127070:three_prime_UTR
CGAAATTCCCTGCTTAATGC+TGG 0.499413 1_3:-56282435 None:intergenic
TACTACCAGGCATGATTTGG+AGG 0.499592 1_3:-56281062 None:intergenic
ACGCGCAATATCGTGTCAAA+CGG 0.505203 1_3:-56283602 None:intergenic
ACTAGTTTCTTTGGATTCGC+GGG 0.509737 1_3:+56283543 Msa0127070:three_prime_UTR
GCCGAGTACTGCTTTGTACA+TGG 0.510991 1_3:-56280902 None:intergenic
GCGAACAAAACTTGAGATCA+TGG 0.518487 1_3:-56283249 None:intergenic
GTCAAAGCCTCAAACCCTGC+TGG 0.521374 1_3:+56280943 Msa0127070:CDS
ACATGGTGCGTGGGAAGAGA+AGG 0.533604 1_3:-56280792 None:intergenic
GAGCAATGGTATCATAGGCT+TGG 0.543525 1_3:-56281014 None:intergenic
TTGATTCAAAGAAAATTAGG+AGG 0.544314 1_3:+56281181 Msa0127070:CDS
TCTTGAAACTCATTGATCAC+TGG 0.545427 1_3:+56280974 Msa0127070:CDS
GAATGAATGTCACAAAATAG+TGG 0.551438 1_3:+56283472 Msa0127070:three_prime_UTR
TCAACCAAATGAAGTAGTAA+TGG 0.553506 1_3:+56282512 Msa0127070:CDS
GATCACCTCCAAATCATGCC+TGG 0.556305 1_3:+56281057 Msa0127070:CDS
AGGGAAATCAATGACGGGGA+CGG 0.561282 1_3:-56280878 None:intergenic
TCCATGTACAAAGCAGTACT+CGG 0.569767 1_3:+56280901 Msa0127070:CDS
ATGGAAGGGAAATCAATGAC+GGG 0.572088 1_3:-56280883 None:intergenic
AGTACTGCTTTGTACATGGA+AGG 0.576818 1_3:-56280898 None:intergenic
CCAAATGAAGTAGTAATGGT+CGG 0.579295 1_3:+56282516 Msa0127070:CDS
CCAAAGATTCCAAGCACATA+CGG 0.581185 1_3:-56283661 None:intergenic
TAGGCTTGGCGTTGTTGATG+TGG 0.585097 1_3:-56281000 None:intergenic
AGAGAACAGATATGCAGTAG+TGG 0.586307 1_3:-56282480 None:intergenic
GGTGGTTAAGTGTGATGACA+TGG 0.587907 1_3:-56280809 None:intergenic
TGATTCAAAGAAAATTAGGA+GGG 0.590623 1_3:+56281182 Msa0127070:CDS
ATGATATAAGAATCTGGAGG+AGG 0.593886 1_3:+56283295 Msa0127070:three_prime_UTR
TTATGACCTTACATGAGGTG+AGG 0.604806 1_3:-56283347 None:intergenic
AAATGAAGTAGTAATGGTCG+GGG 0.605638 1_3:+56282518 Msa0127070:CDS
AATTGAGTAAACTTCAGAGA+GGG 0.606847 1_3:-56283202 None:intergenic
TGCGCGTGTTAAGATTTCCA+AGG 0.606876 1_3:+56283618 Msa0127070:three_prime_UTR
GATTCAAAGAAAATTAGGAG+GGG 0.613293 1_3:+56281183 Msa0127070:CDS
CATGGAAGGGAAATCAATGA+CGG 0.615972 1_3:-56280884 None:intergenic
TTTATTCCACCAACGCTTTG+GGG 0.616024 1_3:+56281239 Msa0127070:CDS
TAAAACTGACCCCAAAGCGT+TGG 0.618013 1_3:-56281248 None:intergenic
GAGGTGACATCTACATTTGG+AGG 0.622873 1_3:+56283314 Msa0127070:three_prime_UTR
GTCTGCTTGATCAAACTGGA+AGG 0.626822 1_3:+56283124 Msa0127070:CDS
AAGTGTGATGACATGGTGCG+TGG 0.628658 1_3:-56280802 None:intergenic
TCAAGATATCGATTCCAGCA+GGG 0.632481 1_3:-56280957 None:intergenic
ACCACCAAAACGCGCCTCCG+TGG 0.633706 1_3:+56280826 Msa0127070:CDS
GTACTGCTTTGTACATGGAA+GGG 0.645077 1_3:-56280897 None:intergenic
CCATGTCGAAAACGACGCCA+CGG 0.669079 1_3:-56280843 None:intergenic
AGTGTGATGACATGGTGCGT+GGG 0.699733 1_3:-56280801 None:intergenic
TGTCGAAAACGACGCCACGG+AGG 0.727352 1_3:-56280840 None:intergenic
TGGAAGGGAAATCAATGACG+GGG 0.729656 1_3:-56280882 None:intergenic
GAATTGAGTAAACTTCAGAG+AGG 0.733429 1_3:-56283203 None:intergenic
TTTATGATATAAGAATCTGG+AGG 0.768254 1_3:+56283292 Msa0127070:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTACTTTTTTTATTATATT+AGG + chr1_3:56281108-56281127 Msa0127070:intron 10.0%
!!! TGATTTTTTCAAATTATTAG+CGG + chr1_3:56281424-56281443 Msa0127070:intron 15.0%
!! ATATGTTTGATAAATAAAAG+TGG - chr1_3:56281697-56281716 None:intergenic 15.0%
!! ATTGAATATGAACAAATAAA+AGG - chr1_3:56282302-56282321 None:intergenic 15.0%
!!! TTTTATTTGTTCATATTCAA+TGG + chr1_3:56282301-56282320 Msa0127070:intron 15.0%
!!! TAGTAAAGTAGATTTTGAAT+GGG - chr1_3:56280742-56280761 None:intergenic 20.0%
!! TTCTTGATTCAAAGAAAATT+AGG + chr1_3:56281178-56281197 Msa0127070:CDS 20.0%
!! TCAATTTACATTACACAATT+GGG + chr1_3:56281316-56281335 Msa0127070:intron 20.0%
!! GAGCATGTTTATAAAAAAAA+GGG - chr1_3:56281760-56281779 None:intergenic 20.0%
!! AGAGCATGTTTATAAAAAAA+AGG - chr1_3:56281761-56281780 None:intergenic 20.0%
!! TTTCTCAAAGATTAACAAAA+TGG - chr1_3:56281871-56281890 None:intergenic 20.0%
!!! GATTTTATTCTATCTTGTTA+TGG - chr1_3:56282022-56282041 None:intergenic 20.0%
!!! TTGTTTGAATTGACTTATTT+AGG - chr1_3:56282193-56282212 None:intergenic 20.0%
!! AATATGAACAAATAAAAGGA+GGG - chr1_3:56282298-56282317 None:intergenic 20.0%
!! GAACATTCAATCAAATTAAT+GGG - chr1_3:56282576-56282595 None:intergenic 20.0%
!! TGAACATTCAATCAAATTAA+TGG - chr1_3:56282577-56282596 None:intergenic 20.0%
!! TTGAATGTTCATGATTTATA+TGG + chr1_3:56282586-56282605 Msa0127070:intron 20.0%
!! ATCATAAACCACAAAATAAA+TGG - chr1_3:56283280-56283299 None:intergenic 20.0%
!! AATAATGTTGTATCATATCT+TGG + chr1_3:56283417-56283436 Msa0127070:three_prime_UTR 20.0%
!!! TTTTGTAACTTCAATTTATC+AGG + chr1_3:56283578-56283597 Msa0127070:three_prime_UTR 20.0%
!! CTAGTAAAGTAGATTTTGAA+TGG - chr1_3:56280743-56280762 None:intergenic 25.0%
! TACAAAAGAAGAAGAAAAGT+AGG - chr1_3:56281092-56281111 None:intergenic 25.0%
! TGATTAATTAATTATGCTGC+AGG + chr1_3:56281135-56281154 Msa0127070:intron 25.0%
! TTGATTCAAAGAAAATTAGG+AGG + chr1_3:56281181-56281200 Msa0127070:CDS 25.0%
! TGATTCAAAGAAAATTAGGA+GGG + chr1_3:56281182-56281201 Msa0127070:CDS 25.0%
! CTCAATTTACATTACACAAT+TGG + chr1_3:56281315-56281334 Msa0127070:intron 25.0%
! TTCATTGTAATTATGTGTGT+CGG - chr1_3:56281399-56281418 None:intergenic 25.0%
! TGTTATCAAGTTACTACTAT+TGG + chr1_3:56281793-56281812 Msa0127070:intron 25.0%
! GGAGTTAAATCTATAAAGTT+TGG + chr1_3:56281833-56281852 Msa0127070:intron 25.0%
! GAGAAAACAAAATCAGTAAA+AGG + chr1_3:56281885-56281904 Msa0127070:intron 25.0%
!! GACAACTGAGTAATTTTATA+TGG + chr1_3:56281929-56281948 Msa0127070:intron 25.0%
!!! AGATGTTCATAAGTTGTTTT+CGG - chr1_3:56282110-56282129 None:intergenic 25.0%
! AATTCAAACAAACCCTTAAA+AGG + chr1_3:56282202-56282221 Msa0127070:intron 25.0%
! GCATAATAAATTGAACTAAC+AGG + chr1_3:56282257-56282276 Msa0127070:intron 25.0%
! ATATGAACAAATAAAAGGAG+GGG - chr1_3:56282297-56282316 None:intergenic 25.0%
! GAATATGAACAAATAAAAGG+AGG - chr1_3:56282299-56282318 None:intergenic 25.0%
! AGAAACAATTGTAAAATCGA+AGG + chr1_3:56282651-56282670 Msa0127070:intron 25.0%
! ATTGAAACGGTTAAAGTTAT+GGG - chr1_3:56282854-56282873 None:intergenic 25.0%
! AATTGAAACGGTTAAAGTTA+TGG - chr1_3:56282855-56282874 None:intergenic 25.0%
! TAAGTGGCATAAAATTGAAA+CGG - chr1_3:56282867-56282886 None:intergenic 25.0%
!!! TTTTATGCCACTTATAATAC+CGG + chr1_3:56282873-56282892 Msa0127070:intron 25.0%
! TCTTCACAATCATAAATAAG+TGG + chr1_3:56282923-56282942 Msa0127070:intron 25.0%
! TGAATCAACAAATATTTCGT+TGG - chr1_3:56283011-56283030 None:intergenic 25.0%
!!! TTTGTTGATTCAGATGTATT+TGG + chr1_3:56283019-56283038 Msa0127070:intron 25.0%
!! TCTTGAGACAAATTTTGAAT+TGG + chr1_3:56283224-56283243 Msa0127070:CDS 25.0%
! TGGTTTATGATATAAGAATC+TGG + chr1_3:56283289-56283308 Msa0127070:three_prime_UTR 25.0%
! TTTATGATATAAGAATCTGG+AGG + chr1_3:56283292-56283311 Msa0127070:three_prime_UTR 25.0%
!!! TTTTTTTATGACCTTACATG+AGG - chr1_3:56283355-56283374 None:intergenic 25.0%
!!! AAAAAGTCCTTGACATTTTT+TGG + chr1_3:56283373-56283392 Msa0127070:three_prime_UTR 25.0%
!!! TAAGCTTTATTGACTTCTTA+GGG + chr1_3:56283450-56283469 Msa0127070:three_prime_UTR 25.0%
!! TTACCTATTACTAGTTTCTT+TGG + chr1_3:56283534-56283553 Msa0127070:three_prime_UTR 25.0%
! AATCCAAAGAAACTAGTAAT+AGG - chr1_3:56283540-56283559 None:intergenic 25.0%
! CGTATATGTAGTTTTTGTGT+GGG - chr1_3:56280655-56280674 None:intergenic 30.0%
CCACACAAAAACTACATATA+CGG + chr1_3:56280653-56280672 Msa0127070:five_prime_UTR 30.0%
AAAATGAGCAATGGTATCAT+AGG - chr1_3:56281022-56281041 None:intergenic 30.0%
!! CTGTTTTTCAAAATGAGCAA+TGG - chr1_3:56281031-56281050 None:intergenic 30.0%
!! CATTGCTCATTTTGAAAAAC+AGG + chr1_3:56281029-56281048 Msa0127070:CDS 30.0%
AAAAGTAGGTATTTACTACC+AGG - chr1_3:56281078-56281097 None:intergenic 30.0%
GATTCAAAGAAAATTAGGAG+GGG + chr1_3:56281183-56281202 Msa0127070:CDS 30.0%
TACTTACAACTATTCAGAGT+TGG + chr1_3:56281291-56281310 Msa0127070:intron 30.0%
TTTACATTACACAATTGGGT+TGG + chr1_3:56281320-56281339 Msa0127070:intron 30.0%
TTTCAAATTATTAGCGGTGT+CGG + chr1_3:56281430-56281449 Msa0127070:intron 30.0%
AAGCCAATGTTGTTAAATAG+CGG - chr1_3:56281573-56281592 None:intergenic 30.0%
CATTATTGTCATGTCAACAA+AGG + chr1_3:56281625-56281644 Msa0127070:intron 30.0%
ATTGGCTGTAGTTTCAATAT+TGG + chr1_3:56281811-56281830 Msa0127070:intron 30.0%
TTGGCTGTAGTTTCAATATT+GGG + chr1_3:56281812-56281831 Msa0127070:intron 30.0%
ATACTGTTTGAGAAAGCTTA+TGG - chr1_3:56282145-56282164 None:intergenic 30.0%
! AAAGCAGATGAACCTTTTAA+GGG - chr1_3:56282217-56282236 None:intergenic 30.0%
! AAAAGCAGATGAACCTTTTA+AGG - chr1_3:56282218-56282237 None:intergenic 30.0%
!!! GCTTTTTTACCCAATTCTAT+TGG + chr1_3:56282232-56282251 Msa0127070:intron 30.0%
! TTTTTACCCAATTCTATTGG+AGG + chr1_3:56282235-56282254 Msa0127070:intron 30.0%
ATTATGCCTCCAATAGAATT+GGG - chr1_3:56282244-56282263 None:intergenic 30.0%
TATTATGCCTCCAATAGAAT+TGG - chr1_3:56282245-56282264 None:intergenic 30.0%
! ATTGAACTAACAGGTTTTTC+TGG + chr1_3:56282266-56282285 Msa0127070:intron 30.0%
TCAACCAAATGAAGTAGTAA+TGG + chr1_3:56282512-56282531 Msa0127070:CDS 30.0%
AACCACTTACATCATCTTTA+AGG - chr1_3:56282548-56282567 None:intergenic 30.0%
TTTCACAACAAAATCCAGAA+AGG + chr1_3:56282697-56282716 Msa0127070:intron 30.0%
! GTCTACTAGTTAGAACTTTT+AGG - chr1_3:56282724-56282743 None:intergenic 30.0%
TTTACAAGCAATCACACTAT+GGG - chr1_3:56282787-56282806 None:intergenic 30.0%
! TTTTACAAGCAATCACACTA+TGG - chr1_3:56282788-56282807 None:intergenic 30.0%
ATACCAAAATGCATAGTGAA+AGG - chr1_3:56282828-56282847 None:intergenic 30.0%
!! TTTGATTTGCAATAAGGATG+AGG + chr1_3:56282898-56282917 Msa0127070:intron 30.0%
!! TTGATTTGCAATAAGGATGA+GGG + chr1_3:56282899-56282918 Msa0127070:intron 30.0%
TGGAAAATATGTGCATAGAA+TGG - chr1_3:56282991-56283010 None:intergenic 30.0%
! GATTCAGATGTATTTGGAAT+TGG + chr1_3:56283025-56283044 Msa0127070:intron 30.0%
AAATCGACATTAGCATATTC+GGG - chr1_3:56283159-56283178 None:intergenic 30.0%
GAAATCGACATTAGCATATT+CGG - chr1_3:56283160-56283179 None:intergenic 30.0%
AATTGAGTAAACTTCAGAGA+GGG - chr1_3:56283205-56283224 None:intergenic 30.0%
CTATGAACCAAAAAATGTCA+AGG - chr1_3:56283383-56283402 None:intergenic 30.0%
!!! CTTGACATTTTTTGGTTCAT+AGG + chr1_3:56283381-56283400 Msa0127070:three_prime_UTR 30.0%
!!! ACATTTTTTGGTTCATAGGT+GGG + chr1_3:56283385-56283404 Msa0127070:three_prime_UTR 30.0%
!! GTAAGCTTTATTGACTTCTT+AGG + chr1_3:56283449-56283468 Msa0127070:three_prime_UTR 30.0%
GAATGAATGTCACAAAATAG+TGG + chr1_3:56283472-56283491 Msa0127070:three_prime_UTR 30.0%
! CCGTATATGTAGTTTTTGTG+TGG - chr1_3:56280656-56280675 None:intergenic 35.0%
!!! TTTGGTACTTTTTCTGAGGT+TGG - chr1_3:56280691-56280710 None:intergenic 35.0%
!!! TGGTTTTGGTACTTTTTCTG+AGG - chr1_3:56280695-56280714 None:intergenic 35.0%
!!! TGATGTCAGATTTCTGGTTT+TGG - chr1_3:56280709-56280728 None:intergenic 35.0%
AAATGCTGATGTCAGATTTC+TGG - chr1_3:56280715-56280734 None:intergenic 35.0%
TCTTGAAACTCATTGATCAC+TGG + chr1_3:56280974-56280993 Msa0127070:CDS 35.0%
ATTTACTACCAGGCATGATT+TGG - chr1_3:56281068-56281087 None:intergenic 35.0%
ATTTATTCCACCAACGCTTT+GGG + chr1_3:56281238-56281257 Msa0127070:CDS 35.0%
ACAACACTGAATATGAAGCA+CGG - chr1_3:56281479-56281498 None:intergenic 35.0%
GCACAGATTGCAAAAAATAG+TGG + chr1_3:56281502-56281521 Msa0127070:intron 35.0%
TAGCCGCTATTTAACAACAT+TGG + chr1_3:56281567-56281586 Msa0127070:intron 35.0%
! GCTATTTAACAACATTGGCT+TGG + chr1_3:56281572-56281591 Msa0127070:intron 35.0%
! GTAAAAGGAATTTGAGACTG+TGG + chr1_3:56281900-56281919 Msa0127070:intron 35.0%
! AAGCTATCTTAGAGAGCTTT+TGG + chr1_3:56282077-56282096 Msa0127070:intron 35.0%
ATATTCAATGGCTCATCGTA+TGG + chr1_3:56282313-56282332 Msa0127070:intron 35.0%
! ATTTTCTCCAGCATTAAGCA+GGG + chr1_3:56282428-56282447 Msa0127070:CDS 35.0%
TACTGCATATCTGTTCTCTT+TGG + chr1_3:56282484-56282503 Msa0127070:CDS 35.0%
ACTGCATATCTGTTCTCTTT+GGG + chr1_3:56282485-56282504 Msa0127070:CDS 35.0%
CCAAATGAAGTAGTAATGGT+CGG + chr1_3:56282516-56282535 Msa0127070:CDS 35.0%
CAAATGAAGTAGTAATGGTC+GGG + chr1_3:56282517-56282536 Msa0127070:CDS 35.0%
AAATGAAGTAGTAATGGTCG+GGG + chr1_3:56282518-56282537 Msa0127070:CDS 35.0%
AGCCTTAAAGATGATGTAAG+TGG + chr1_3:56282543-56282562 Msa0127070:intron 35.0%
GATTGTTCATTTGTACCCAA+AGG - chr1_3:56282628-56282647 None:intergenic 35.0%
!! TAGAACTTTTAGGTCCTTTC+TGG - chr1_3:56282714-56282733 None:intergenic 35.0%
TGTAAAAGAACCCTATGACT+CGG + chr1_3:56282801-56282820 Msa0127070:intron 35.0%
TCAAATGCCGGTATTATAAG+TGG - chr1_3:56282883-56282902 None:intergenic 35.0%
CCTTATTGCAAATCAAATGC+CGG - chr1_3:56282895-56282914 None:intergenic 35.0%
GAAAGATATTGCTTCAAGCT+GGG - chr1_3:56282969-56282988 None:intergenic 35.0%
! CAGATGTATTTGGAATTGGA+TGG + chr1_3:56283029-56283048 Msa0127070:intron 35.0%
CGATTTCAAACCAGATTTCA+AGG + chr1_3:56283173-56283192 Msa0127070:CDS 35.0%
GAATTGAGTAAACTTCAGAG+AGG - chr1_3:56283206-56283225 None:intergenic 35.0%
ATGATATAAGAATCTGGAGG+AGG + chr1_3:56283295-56283314 Msa0127070:three_prime_UTR 35.0%
TTTATTCCTCACCTCATGTA+AGG + chr1_3:56283341-56283360 Msa0127070:three_prime_UTR 35.0%
!!! GACATTTTTTGGTTCATAGG+TGG + chr1_3:56283384-56283403 Msa0127070:three_prime_UTR 35.0%
! TACTAGTTTCTTTGGATTCG+CGG + chr1_3:56283542-56283561 Msa0127070:three_prime_UTR 35.0%
! TAGTTTTTGTGTGGGACGAA+CGG - chr1_3:56280647-56280666 None:intergenic 40.0%
! GAAGAGAAGGAAAGCTTTTG+CGG - chr1_3:56280782-56280801 None:intergenic 40.0%
ATGGAAGGGAAATCAATGAC+GGG - chr1_3:56280886-56280905 None:intergenic 40.0%
CATGGAAGGGAAATCAATGA+CGG - chr1_3:56280887-56280906 None:intergenic 40.0%
GTACTGCTTTGTACATGGAA+GGG - chr1_3:56280900-56280919 None:intergenic 40.0%
AGTACTGCTTTGTACATGGA+AGG - chr1_3:56280901-56280920 None:intergenic 40.0%
TCCATGTACAAAGCAGTACT+CGG + chr1_3:56280901-56280920 Msa0127070:CDS 40.0%
!! TCAAGATATCGATTCCAGCA+GGG - chr1_3:56280960-56280979 None:intergenic 40.0%
!! TTCAAGATATCGATTCCAGC+AGG - chr1_3:56280961-56280980 None:intergenic 40.0%
TTAGGAGGGGTTTGATTACA+AGG + chr1_3:56281196-56281215 Msa0127070:CDS 40.0%
GATTTATTCCACCAACGCTT+TGG + chr1_3:56281237-56281256 Msa0127070:CDS 40.0%
TTTATTCCACCAACGCTTTG+GGG + chr1_3:56281239-56281258 Msa0127070:CDS 40.0%
! GTAATTATGTGTGTCGGTGT+CGG - chr1_3:56281393-56281412 None:intergenic 40.0%
CTGAATATGAAGCACGGATA+CGG - chr1_3:56281473-56281492 None:intergenic 40.0%
! GAATTTGAGACTGTGGCATT+TGG + chr1_3:56281907-56281926 Msa0127070:intron 40.0%
AAATGTAATCTGCAGCAACG+AGG - chr1_3:56282412-56282431 None:intergenic 40.0%
! CATTTTCTCCAGCATTAAGC+AGG + chr1_3:56282427-56282446 Msa0127070:CDS 40.0%
AGAGAACAGATATGCAGTAG+TGG - chr1_3:56282483-56282502 None:intergenic 40.0%
CCGACCATTACTACTTCATT+TGG - chr1_3:56282519-56282538 None:intergenic 40.0%
AAGCCATAATTGTCCACCTT+TGG + chr1_3:56282609-56282628 Msa0127070:intron 40.0%
AGCCATAATTGTCCACCTTT+GGG + chr1_3:56282610-56282629 Msa0127070:intron 40.0%
TACCCAAAGGTGGACAATTA+TGG - chr1_3:56282615-56282634 None:intergenic 40.0%
TGTTCATTTGTACCCAAAGG+TGG - chr1_3:56282625-56282644 None:intergenic 40.0%
! GGTCCTTTCACTATGCATTT+TGG + chr1_3:56282822-56282841 Msa0127070:intron 40.0%
!! CCGGCATTTGATTTGCAATA+AGG + chr1_3:56282892-56282911 Msa0127070:intron 40.0%
ATAAATAAGTGGCCTGCACA+GGG + chr1_3:56282934-56282953 Msa0127070:intron 40.0%
GGAAAGATATTGCTTCAAGC+TGG - chr1_3:56282970-56282989 None:intergenic 40.0%
! ACCATTTTGCAGATTGCTTG+TGG + chr1_3:56283078-56283097 Msa0127070:intron 40.0%
TCCACAAGCAATCTGCAAAA+TGG - chr1_3:56283082-56283101 None:intergenic 40.0%
! ATTTTGCAGATTGCTTGTGG+AGG + chr1_3:56283081-56283100 Msa0127070:intron 40.0%
! TTTTGCAGATTGCTTGTGGA+GGG + chr1_3:56283082-56283101 Msa0127070:intron 40.0%
ACTTGTCTGCTTGATCAAAC+TGG + chr1_3:56283120-56283139 Msa0127070:CDS 40.0%
AGGGAAGTTACCTTGAAATC+TGG - chr1_3:56283186-56283205 None:intergenic 40.0%
GCGAACAAAACTTGAGATCA+TGG - chr1_3:56283252-56283271 None:intergenic 40.0%
TTATGACCTTACATGAGGTG+AGG - chr1_3:56283350-56283369 None:intergenic 40.0%
! ACTAGTTTCTTTGGATTCGC+GGG + chr1_3:56283543-56283562 Msa0127070:three_prime_UTR 40.0%
TGCTAATAACTGATCAGCCT+TGG - chr1_3:56283638-56283657 None:intergenic 40.0%
GGTGGTTAAGTGTGATGACA+TGG - chr1_3:56280812-56280831 None:intergenic 45.0%
TGGAAGGGAAATCAATGACG+GGG - chr1_3:56280885-56280904 None:intergenic 45.0%
GAGCAATGGTATCATAGGCT+TGG - chr1_3:56281017-56281036 None:intergenic 45.0%
! TACTACCAGGCATGATTTGG+AGG - chr1_3:56281065-56281084 None:intergenic 45.0%
TAAAACTGACCCCAAAGCGT+TGG - chr1_3:56281251-56281270 None:intergenic 45.0%
GGACACGGACAACTAATTTG+AGG - chr1_3:56281372-56281391 None:intergenic 45.0%
ATGAAGCACGGATACGGATA+CGG - chr1_3:56281467-56281486 None:intergenic 45.0%
AATGGCTCATCGTATGGTGA+AGG + chr1_3:56282319-56282338 Msa0127070:intron 45.0%
CGAAATTCCCTGCTTAATGC+TGG - chr1_3:56282438-56282457 None:intergenic 45.0%
GGAGCTGGATCAGGTTTATA+AGG - chr1_3:56282462-56282481 None:intergenic 45.0%
AGTGAAAGGACCGAGTCATA+GGG - chr1_3:56282814-56282833 None:intergenic 45.0%
TAGTGAAAGGACCGAGTCAT+AGG - chr1_3:56282815-56282834 None:intergenic 45.0%
CATAAATAAGTGGCCTGCAC+AGG + chr1_3:56282933-56282952 Msa0127070:intron 45.0%
GTCTGCTTGATCAAACTGGA+AGG + chr1_3:56283124-56283143 Msa0127070:CDS 45.0%
!!! GATCTCAAGTTTTGTTCGCG+TGG + chr1_3:56283253-56283272 Msa0127070:exon 45.0%
!!! CGCGTGGACCATTTATTTTG+TGG + chr1_3:56283269-56283288 Msa0127070:three_prime_UTR 45.0%
GAGGAGGTGACATCTACATT+TGG + chr1_3:56283311-56283330 Msa0127070:three_prime_UTR 45.0%
GAGGTGACATCTACATTTGG+AGG + chr1_3:56283314-56283333 Msa0127070:three_prime_UTR 45.0%
ACGCGCAATATCGTGTCAAA+CGG - chr1_3:56283605-56283624 None:intergenic 45.0%
TGCGCGTGTTAAGATTTCCA+AGG + chr1_3:56283618-56283637 Msa0127070:three_prime_UTR 45.0%
! GCTTTTGCGGAAGAGAGCAA+TGG - chr1_3:56280769-56280788 None:intergenic 50.0%
AGTGTGATGACATGGTGCGT+GGG - chr1_3:56280804-56280823 None:intergenic 50.0%
AAGTGTGATGACATGGTGCG+TGG - chr1_3:56280805-56280824 None:intergenic 50.0%
! AGGGAAATCAATGACGGGGA+CGG - chr1_3:56280881-56280900 None:intergenic 50.0%
! GCCGAGTACTGCTTTGTACA+TGG - chr1_3:56280905-56280924 None:intergenic 50.0%
! ATCGATTCCAGCAGGGTTTG+AGG - chr1_3:56280953-56280972 None:intergenic 50.0%
TAGGCTTGGCGTTGTTGATG+TGG - chr1_3:56281003-56281022 None:intergenic 50.0%
GATCACCTCCAAATCATGCC+TGG + chr1_3:56281057-56281076 Msa0127070:CDS 50.0%
! CAGATATGCAGTAGTGGAGC+TGG - chr1_3:56282477-56282496 None:intergenic 50.0%
CGCGCAATATCGTGTCAAAC+GGG - chr1_3:56283604-56283623 None:intergenic 50.0%
ACATGGTGCGTGGGAAGAGA+AGG - chr1_3:56280795-56280814 None:intergenic 55.0%
CCATGTCGAAAACGACGCCA+CGG - chr1_3:56280846-56280865 None:intergenic 55.0%
!! GGCGTCGTTTTCGACATGGA+CGG + chr1_3:56280847-56280866 Msa0127070:CDS 55.0%
GTCAAAGCCTCAAACCCTGC+TGG + chr1_3:56280943-56280962 Msa0127070:CDS 55.0%
!! AACTGACCCCAAAGCGTTGG+TGG - chr1_3:56281248-56281267 None:intergenic 55.0%
!! ATGTGTGTCGGTGTCGGACA+CGG - chr1_3:56281387-56281406 None:intergenic 55.0%
! TGCAGTAGTGGAGCTGGATC+AGG - chr1_3:56282471-56282490 None:intergenic 55.0%
GGGTTGAAGTTACCCTGTGC+AGG - chr1_3:56282949-56282968 None:intergenic 55.0%
TGTCGAAAACGACGCCACGG+AGG - chr1_3:56280843-56280862 None:intergenic 60.0%
!! CCGTGGCGTCGTTTTCGACA+TGG + chr1_3:56280843-56280862 Msa0127070:CDS 60.0%
ATTGCTTGTGGAGGGCGAGC+AGG + chr1_3:56283090-56283109 Msa0127070:CDS 60.0%
ACCACCAAAACGCGCCTCCG+TGG + chr1_3:56280826-56280845 Msa0127070:CDS 65.0%
!! GCCACGGAGGCGCGTTTTGG+TGG - chr1_3:56280830-56280849 None:intergenic 70.0%
!! GACGCCACGGAGGCGCGTTT+TGG - chr1_3:56280833-56280852 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 56280626 56283671 56280626 ID=Msa0127070;Name=Msa0127070
chr1_3 mRNA 56280626 56283671 56280626 ID=Msa0127070-mRNA-1;Parent=Msa0127070;Name=Msa0127070-mRNA-1;_AED=0.05;_eAED=0.05;_QI=137|1|1|1|1|1|4|417|239
chr1_3 exon 56280626 56281078 56280626 ID=Msa0127070-mRNA-1:exon:17641;Parent=Msa0127070-mRNA-1
chr1_3 exon 56281157 56281260 56281157 ID=Msa0127070-mRNA-1:exon:17642;Parent=Msa0127070-mRNA-1
chr1_3 exon 56282423 56282557 56282423 ID=Msa0127070-mRNA-1:exon:17643;Parent=Msa0127070-mRNA-1
chr1_3 exon 56283090 56283671 56283090 ID=Msa0127070-mRNA-1:exon:17644;Parent=Msa0127070-mRNA-1
chr1_3 five_prime_UTR 56280626 56280762 56280626 ID=Msa0127070-mRNA-1:five_prime_utr;Parent=Msa0127070-mRNA-1
chr1_3 CDS 56280763 56281078 56280763 ID=Msa0127070-mRNA-1:cds;Parent=Msa0127070-mRNA-1
chr1_3 CDS 56281157 56281260 56281157 ID=Msa0127070-mRNA-1:cds;Parent=Msa0127070-mRNA-1
chr1_3 CDS 56282423 56282557 56282423 ID=Msa0127070-mRNA-1:cds;Parent=Msa0127070-mRNA-1
chr1_3 CDS 56283090 56283254 56283090 ID=Msa0127070-mRNA-1:cds;Parent=Msa0127070-mRNA-1
chr1_3 three_prime_UTR 56283255 56283671 56283255 ID=Msa0127070-mRNA-1:three_prime_utr;Parent=Msa0127070-mRNA-1
Gene Sequence

>Msa0127070

ATGCCATTGCTCTCTTCCGCAAAAGCTTTCCTTCTCTTCCCACGCACCATGTCATCACACTTAACCACCAAAACGCGCCTCCGTGGCGTCGTTTTCGACATGGACGGAACTCTCACCGTCCCCGTCATTGATTTCCCTTCCATGTACAAAGCAGTACTCGGCGACGATGAGTATCTACGCGTCAAAGCCTCAAACCCTGCTGGAATCGATATCTTGAAACTCATTGATCACTGGTCTCCACATCAACAACGCCAAGCCTATGATACCATTGCTCATTTTGAAAAACAGGCTCTCGATCACCTCCAAATCATGCCTGGTGCTTCTGAGCTTTGTAATGTTCTTGATTCAAAGAAAATTAGGAGGGGTTTGATTACAAGGAATATGAAATCTGCTGTTGATTTATTCCACCAACGCTTTGGGATTACATTTTCTCCAGCATTAAGCAGGGAATTTCGTCCTTATAAACCTGATCCAGCTCCACTACTGCATATCTGTTCTCTTTGGGAAGTTCAACCAAATGAAGTAGTAATGGTCGGGGATAGCCTTAAAGATGATATTGCTTGTGGAGGGCGAGCAGGAGCACATACTTGTCTGCTTGATCAAACTGGAAGGTATGATTCTCCCGAATATGCTAATGTCGATTTCAAACCAGATTTCAAGGTAACTTCCCTCTCTGAAGTTTACTCAATTCTTGAGACAAATTTTGAATTGGCACCATGA

Protein sequence

>Msa0127070

MPLLSSAKAFLLFPRTMSSHLTTKTRLRGVVFDMDGTLTVPVIDFPSMYKAVLGDDEYLRVKASNPAGIDILKLIDHWSPHQQRQAYDTIAHFEKQALDHLQIMPGASELCNVLDSKKIRRGLITRNMKSAVDLFHQRFGITFSPALSREFRPYKPDPAPLLHICSLWEVQPNEVVMVGDSLKDDIACGGRAGAHTCLLDQTGRYDSPEYANVDFKPDFKVTSLSEVYSILETNFELAP*