AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0076980


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0076980 MtrunA17_Chr1g0186031 95.816 239 10 0 1 239 1 239 8.83e-175 479
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0076980 AT2G33255.1 68.161 223 69 1 19 239 23 245 1.31e-115 331

Find 83 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTAAGCTTTATTGACTTCTT+AGG 0.133455 1_2:-53431169 Msa0076980:three_prime_UTR
AACCACTTACATCATCTTTA+AGG 0.144402 1_2:+53432075 None:intergenic
AAATGCTGATGTCAGATTTC+TGG 0.175133 1_2:+53433832 None:intergenic
TTACCTATTACTAGTTTCTT+TGG 0.219683 1_2:-53431084 Msa0076980:three_prime_UTR
ATTTATTCCACCAACGCTTT+GGG 0.274021 1_2:-53433306 Msa0076980:CDS
GAAATCGACATTAGCATATT+CGG 0.286039 1_2:+53431462 None:intergenic
TTCTTGATTCAAAGAAAATT+AGG 0.286367 1_2:-53433366 Msa0076980:CDS
TACTGCATATCTGTTCTCTT+TGG 0.304882 1_2:-53432136 Msa0076980:CDS
ATTTACTACCAGGCATGATT+TGG 0.318202 1_2:+53433479 None:intergenic
GATTTATTCCACCAACGCTT+TGG 0.319915 1_2:-53433307 Msa0076980:CDS
ATCATAAACCACAAAATAAA+TGG 0.325555 1_2:+53431342 None:intergenic
TGATGTCAGATTTCTGGTTT+TGG 0.332123 1_2:+53433838 None:intergenic
GACGCCACGGAGGCGCGTTT+TGG 0.336627 1_2:+53433714 None:intergenic
AATCCAAAGAAACTAGTAAT+AGG 0.348757 1_2:+53431081 None:intergenic
ACTGCATATCTGTTCTCTTT+GGG 0.358743 1_2:-53432135 Msa0076980:CDS
AATAATGTTGTATCATATCT+TGG 0.360992 1_2:-53431201 Msa0076980:three_prime_UTR
AAAATGAGCAATGGTATCAT+AGG 0.361847 1_2:+53433525 None:intergenic
CCGACCATTACTACTTCATT+TGG 0.368014 1_2:+53432104 None:intergenic
AGGGAAGTTACCTTGAAATC+TGG 0.368119 1_2:+53431436 None:intergenic
AAATCGACATTAGCATATTC+GGG 0.370379 1_2:+53431463 None:intergenic
TAAGCTTTATTGACTTCTTA+GGG 0.375413 1_2:-53431168 Msa0076980:three_prime_UTR
TTAGCATCATCGTATGTGTT+TGG 0.378782 1_2:-53430966 None:intergenic
GGAGCTGGATCAGGTTTATA+AGG 0.385703 1_2:+53432161 None:intergenic
TGGTTTATGATATAAGAATC+TGG 0.392922 1_2:-53431330 Msa0076980:three_prime_UTR
CGATTTCAAACCAGATTTCA+AGG 0.418712 1_2:-53431446 Msa0076980:CDS
ACTTGTCTGCTTGATCAAAC+TGG 0.423784 1_2:-53431499 Msa0076980:CDS
TTTATTCCTCACCTCATGTA+AGG 0.429471 1_2:-53431278 Msa0076980:three_prime_UTR
TACTAGTTTCTTTGGATTCG+CGG 0.435189 1_2:-53431076 Msa0076980:three_prime_UTR
ATTGCTTGTGGAGGGCGAGC+AGG 0.444789 1_2:-53431529 Msa0076980:CDS
TTAGGAGGGGTTTGATTACA+AGG 0.448691 1_2:-53433348 Msa0076980:CDS
CAAATGAAGTAGTAATGGTC+GGG 0.454036 1_2:-53432103 Msa0076980:CDS
TGCAGTAGTGGAGCTGGATC+AGG 0.459438 1_2:+53432152 None:intergenic
ATCGATTCCAGCAGGGTTTG+AGG 0.464862 1_2:+53433594 None:intergenic
TGCTAATAACTGATCAGCCT+TGG 0.470390 1_2:+53430983 None:intergenic
GAGGAGGTGACATCTACATT+TGG 0.473312 1_2:-53431308 Msa0076980:three_prime_UTR
TTCAAGATATCGATTCCAGC+AGG 0.477823 1_2:+53433586 None:intergenic
AACTGACCCCAAAGCGTTGG+TGG 0.483746 1_2:+53433299 None:intergenic
CAGATATGCAGTAGTGGAGC+TGG 0.491301 1_2:+53432146 None:intergenic
CGCGCAATATCGTGTCAAAC+GGG 0.494160 1_2:+53431017 None:intergenic
CGAAATTCCCTGCTTAATGC+TGG 0.499413 1_2:+53432185 None:intergenic
TACTACCAGGCATGATTTGG+AGG 0.499592 1_2:+53433482 None:intergenic
ACGCGCAATATCGTGTCAAA+CGG 0.505203 1_2:+53431016 None:intergenic
ACTAGTTTCTTTGGATTCGC+GGG 0.509737 1_2:-53431075 Msa0076980:three_prime_UTR
GCCGAGTACTGCTTTGTACA+TGG 0.510991 1_2:+53433642 None:intergenic
GCGAACAAAACTTGAGATCA+TGG 0.518487 1_2:+53431370 None:intergenic
GTCAAAGCCTCAAACCCTGC+TGG 0.521374 1_2:-53433601 Msa0076980:CDS
ACATGGTGCGTGGGAAGAGA+AGG 0.533604 1_2:+53433752 None:intergenic
GAGCAATGGTATCATAGGCT+TGG 0.543525 1_2:+53433530 None:intergenic
TTGATTCAAAGAAAATTAGG+AGG 0.544314 1_2:-53433363 Msa0076980:CDS
TCTTGAAACTCATTGATCAC+TGG 0.545427 1_2:-53433570 Msa0076980:CDS
GAATGAATGTCACAAAATAG+TGG 0.551438 1_2:-53431146 Msa0076980:three_prime_UTR
TCAACCAAATGAAGTAGTAA+TGG 0.553506 1_2:-53432108 Msa0076980:CDS
GATCACCTCCAAATCATGCC+TGG 0.556305 1_2:-53433487 Msa0076980:intron
AGGGAAATCAATGACGGGGA+CGG 0.561282 1_2:+53433666 None:intergenic
TCCATGTACAAAGCAGTACT+CGG 0.569767 1_2:-53433643 Msa0076980:CDS
ATGGAAGGGAAATCAATGAC+GGG 0.572088 1_2:+53433661 None:intergenic
AGTACTGCTTTGTACATGGA+AGG 0.576818 1_2:+53433646 None:intergenic
CCAAATGAAGTAGTAATGGT+CGG 0.579295 1_2:-53432104 Msa0076980:CDS
TAGGCTTGGCGTTGTTGATG+TGG 0.585097 1_2:+53433544 None:intergenic
AGAGAACAGATATGCAGTAG+TGG 0.586307 1_2:+53432140 None:intergenic
GGTGGTTAAGTGTGATGACA+TGG 0.587907 1_2:+53433735 None:intergenic
TGATTCAAAGAAAATTAGGA+GGG 0.590623 1_2:-53433362 Msa0076980:CDS
ATGATATAAGAATCTGGAGG+AGG 0.593886 1_2:-53431324 Msa0076980:three_prime_UTR
TTATGACCTTACATGAGGTG+AGG 0.604806 1_2:+53431272 None:intergenic
AAATGAAGTAGTAATGGTCG+GGG 0.605638 1_2:-53432102 Msa0076980:CDS
AATTGAGTAAACTTCAGAGA+GGG 0.606847 1_2:+53431417 None:intergenic
TGCGCGTGTTAAGATTTCCA+AGG 0.606876 1_2:-53431000 Msa0076980:three_prime_UTR
GATTCAAAGAAAATTAGGAG+GGG 0.613293 1_2:-53433361 Msa0076980:CDS
CATGGAAGGGAAATCAATGA+CGG 0.615972 1_2:+53433660 None:intergenic
TTTATTCCACCAACGCTTTG+GGG 0.616024 1_2:-53433305 Msa0076980:intron
TAAAACTGACCCCAAAGCGT+TGG 0.618013 1_2:+53433296 None:intergenic
GAGGTGACATCTACATTTGG+AGG 0.622873 1_2:-53431305 Msa0076980:three_prime_UTR
GTCTGCTTGATCAAACTGGA+AGG 0.626822 1_2:-53431495 Msa0076980:CDS
AAGTGTGATGACATGGTGCG+TGG 0.628658 1_2:+53433742 None:intergenic
TCAAGATATCGATTCCAGCA+GGG 0.632481 1_2:+53433587 None:intergenic
ACCACCAAAACGCGCCTCCG+TGG 0.633706 1_2:-53433718 Msa0076980:CDS
GTACTGCTTTGTACATGGAA+GGG 0.645077 1_2:+53433647 None:intergenic
CCATGTCGAAAACGACGCCA+CGG 0.669079 1_2:+53433701 None:intergenic
AGTGTGATGACATGGTGCGT+GGG 0.699733 1_2:+53433743 None:intergenic
TGTCGAAAACGACGCCACGG+AGG 0.727352 1_2:+53433704 None:intergenic
TGGAAGGGAAATCAATGACG+GGG 0.729656 1_2:+53433662 None:intergenic
GAATTGAGTAAACTTCAGAG+AGG 0.733429 1_2:+53431416 None:intergenic
TTTATGATATAAGAATCTGG+AGG 0.768254 1_2:-53431327 Msa0076980:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTACTTTTTTTATTATATT+AGG - chr1_2:53431453-53431472 Msa0076980:CDS 10.0%
!!! TGATTTTTTCAAATTATTAG+CGG - chr1_2:53431769-53431788 Msa0076980:intron 15.0%
!! ATTGAATATGAACAAATAAA+AGG + chr1_2:53432572-53432591 None:intergenic 15.0%
!!! TTTTATTTGTTCATATTCAA+TGG - chr1_2:53432571-53432590 Msa0076980:intron 15.0%
!!! TAGTAAAGTAGATTTTGAAT+GGG + chr1_2:53431087-53431106 None:intergenic 20.0%
!! TTCTTGATTCAAAGAAAATT+AGG - chr1_2:53431523-53431542 Msa0076980:CDS 20.0%
!! TCAATTTACATTACACAATT+GGG - chr1_2:53431661-53431680 Msa0076980:intron 20.0%
!! GAGCATGTTTATAAAAAAAA+GGG + chr1_2:53432030-53432049 None:intergenic 20.0%
!! AGAGCATGTTTATAAAAAAA+AGG + chr1_2:53432031-53432050 None:intergenic 20.0%
!! TTTCTCAAAGATTAACAAAA+TGG + chr1_2:53432141-53432160 None:intergenic 20.0%
!!! GATTTTATTCTATCTTGTTA+TGG + chr1_2:53432292-53432311 None:intergenic 20.0%
!!! TTGTTTGAATTGACTTATTT+AGG + chr1_2:53432463-53432482 None:intergenic 20.0%
!! AATATGAACAAATAAAAGGA+GGG + chr1_2:53432568-53432587 None:intergenic 20.0%
!! GAACATTCAATCAAATTAAT+GGG + chr1_2:53432845-53432864 None:intergenic 20.0%
!! TGAACATTCAATCAAATTAA+TGG + chr1_2:53432846-53432865 None:intergenic 20.0%
!! TTGAATGTTCATGATTTATA+TGG - chr1_2:53432855-53432874 Msa0076980:intron 20.0%
!! ATCATAAACCACAAAATAAA+TGG + chr1_2:53433550-53433569 None:intergenic 20.0%
!! AATAATGTTGTATCATATCT+TGG - chr1_2:53433688-53433707 Msa0076980:CDS 20.0%
!! CTAGTAAAGTAGATTTTGAA+TGG + chr1_2:53431088-53431107 None:intergenic 25.0%
! TACAAAAGAAGAAGAAAAGT+AGG + chr1_2:53431437-53431456 None:intergenic 25.0%
! TGATTAATTAATTATGCTGC+AGG - chr1_2:53431480-53431499 Msa0076980:CDS 25.0%
! TTGATTCAAAGAAAATTAGG+AGG - chr1_2:53431526-53431545 Msa0076980:CDS 25.0%
! TGATTCAAAGAAAATTAGGA+GGG - chr1_2:53431527-53431546 Msa0076980:CDS 25.0%
! CTCAATTTACATTACACAAT+TGG - chr1_2:53431660-53431679 Msa0076980:intron 25.0%
! TTCATTGTAATTATGTGTGT+CGG + chr1_2:53431744-53431763 None:intergenic 25.0%
! TGTTATCAAGTTACTACTAT+TGG - chr1_2:53432063-53432082 Msa0076980:intron 25.0%
! GGAGTTAAATCTATAAAGTT+TGG - chr1_2:53432103-53432122 Msa0076980:CDS 25.0%
! GAGAAAACAAAATCAGTAAA+AGG - chr1_2:53432155-53432174 Msa0076980:CDS 25.0%
!! GACAACTGAGTAATTTTATA+TGG - chr1_2:53432199-53432218 Msa0076980:CDS 25.0%
!!! AGATGTTCATAAGTTGTTTT+CGG + chr1_2:53432380-53432399 None:intergenic 25.0%
! AATTCAAACAAACCCTTAAA+AGG - chr1_2:53432472-53432491 Msa0076980:intron 25.0%
! GCATAATAAATTGAACTAAC+AGG - chr1_2:53432527-53432546 Msa0076980:intron 25.0%
! ATATGAACAAATAAAAGGAG+GGG + chr1_2:53432567-53432586 None:intergenic 25.0%
! GAATATGAACAAATAAAAGG+AGG + chr1_2:53432569-53432588 None:intergenic 25.0%
! AGAAACAATTGTAAAATCGA+AGG - chr1_2:53432921-53432940 Msa0076980:intron 25.0%
! ATTGAAACGGTTAAAGTTAT+GGG + chr1_2:53433124-53433143 None:intergenic 25.0%
! AATTGAAACGGTTAAAGTTA+TGG + chr1_2:53433125-53433144 None:intergenic 25.0%
! TAAGTGGCATAAAATTGAAA+CGG + chr1_2:53433137-53433156 None:intergenic 25.0%
!!! TTTTATGCCACTTATAATAC+CGG - chr1_2:53433143-53433162 Msa0076980:intron 25.0%
! TCTTCACAATCATAAATAAG+TGG - chr1_2:53433193-53433212 Msa0076980:intron 25.0%
! TGAATCAACAAATATTTCGT+TGG + chr1_2:53433281-53433300 None:intergenic 25.0%
!!! TTTGTTGATTCAGATGTATT+TGG - chr1_2:53433289-53433308 Msa0076980:intron 25.0%
!! TCTTGAGACAAATTTTGAAT+TGG - chr1_2:53433494-53433513 Msa0076980:CDS 25.0%
! TGGTTTATGATATAAGAATC+TGG - chr1_2:53433559-53433578 Msa0076980:CDS 25.0%
! TTTATGATATAAGAATCTGG+AGG - chr1_2:53433562-53433581 Msa0076980:CDS 25.0%
!!! TTTTTTTATGACCTTACATG+AGG + chr1_2:53433625-53433644 None:intergenic 25.0%
!!! AAAAAGTCCTTGACATTTTT+TGG - chr1_2:53433644-53433663 Msa0076980:CDS 25.0%
!!! TAAGCTTTATTGACTTCTTA+GGG - chr1_2:53433721-53433740 Msa0076980:CDS 25.0%
!! TTACCTATTACTAGTTTCTT+TGG - chr1_2:53433805-53433824 Msa0076980:five_prime_UTR 25.0%
! AATCCAAAGAAACTAGTAAT+AGG + chr1_2:53433811-53433830 None:intergenic 25.0%
! CGTATATGTAGTTTTTGTGT+GGG + chr1_2:53430998-53431017 None:intergenic 30.0%
CCACACAAAAACTACATATA+CGG - chr1_2:53430996-53431015 Msa0076980:three_prime_UTR 30.0%
AAAATGAGCAATGGTATCAT+AGG + chr1_2:53431367-53431386 None:intergenic 30.0%
!! CTGTTTTTCAAAATGAGCAA+TGG + chr1_2:53431376-53431395 None:intergenic 30.0%
!! CATTGCTCATTTTGAAAAAC+AGG - chr1_2:53431374-53431393 Msa0076980:exon 30.0%
AAAAGTAGGTATTTACTACC+AGG + chr1_2:53431423-53431442 None:intergenic 30.0%
GATTCAAAGAAAATTAGGAG+GGG - chr1_2:53431528-53431547 Msa0076980:CDS 30.0%
TACTTACAACTATTCAGAGT+TGG - chr1_2:53431636-53431655 Msa0076980:intron 30.0%
TTTACATTACACAATTGGGT+TGG - chr1_2:53431665-53431684 Msa0076980:intron 30.0%
TTTCAAATTATTAGCGGTGT+CGG - chr1_2:53431775-53431794 Msa0076980:intron 30.0%
AAGCCAATGTTGTTAAATAG+CGG + chr1_2:53431918-53431937 None:intergenic 30.0%
CATTATTGTCATGTCAACAA+AGG - chr1_2:53431970-53431989 Msa0076980:intron 30.0%
ATTGGCTGTAGTTTCAATAT+TGG - chr1_2:53432081-53432100 Msa0076980:intron 30.0%
TTGGCTGTAGTTTCAATATT+GGG - chr1_2:53432082-53432101 Msa0076980:intron 30.0%
ATACTGTTTGAGAAAGCTTA+TGG + chr1_2:53432415-53432434 None:intergenic 30.0%
! AAAGCAGATGAACCTTTTAA+GGG + chr1_2:53432487-53432506 None:intergenic 30.0%
! AAAAGCAGATGAACCTTTTA+AGG + chr1_2:53432488-53432507 None:intergenic 30.0%
!!! GCTTTTTTACCCAATTCTAT+TGG - chr1_2:53432502-53432521 Msa0076980:intron 30.0%
! TTTTTACCCAATTCTATTGG+AGG - chr1_2:53432505-53432524 Msa0076980:intron 30.0%
ATTATGCCTCCAATAGAATT+GGG + chr1_2:53432514-53432533 None:intergenic 30.0%
TATTATGCCTCCAATAGAAT+TGG + chr1_2:53432515-53432534 None:intergenic 30.0%
! ATTGAACTAACAGGTTTTTC+TGG - chr1_2:53432536-53432555 Msa0076980:intron 30.0%
TCAACCAAATGAAGTAGTAA+TGG - chr1_2:53432781-53432800 Msa0076980:intron 30.0%
AACCACTTACATCATCTTTA+AGG + chr1_2:53432817-53432836 None:intergenic 30.0%
TTTCACAACAAAATCCAGAA+AGG - chr1_2:53432967-53432986 Msa0076980:intron 30.0%
! GTCTACTAGTTAGAACTTTT+AGG + chr1_2:53432994-53433013 None:intergenic 30.0%
TTTACAAGCAATCACACTAT+GGG + chr1_2:53433057-53433076 None:intergenic 30.0%
! TTTTACAAGCAATCACACTA+TGG + chr1_2:53433058-53433077 None:intergenic 30.0%
ATACCAAAATGCATAGTGAA+AGG + chr1_2:53433098-53433117 None:intergenic 30.0%
!! TTTGATTTGCAATAAGGATG+AGG - chr1_2:53433168-53433187 Msa0076980:intron 30.0%
!! TTGATTTGCAATAAGGATGA+GGG - chr1_2:53433169-53433188 Msa0076980:intron 30.0%
TGGAAAATATGTGCATAGAA+TGG + chr1_2:53433261-53433280 None:intergenic 30.0%
! GATTCAGATGTATTTGGAAT+TGG - chr1_2:53433295-53433314 Msa0076980:intron 30.0%
AAATCGACATTAGCATATTC+GGG + chr1_2:53433429-53433448 None:intergenic 30.0%
GAAATCGACATTAGCATATT+CGG + chr1_2:53433430-53433449 None:intergenic 30.0%
AATTGAGTAAACTTCAGAGA+GGG + chr1_2:53433475-53433494 None:intergenic 30.0%
CTATGAACCAAAAAATGTCA+AGG + chr1_2:53433654-53433673 None:intergenic 30.0%
!!! CTTGACATTTTTTGGTTCAT+AGG - chr1_2:53433652-53433671 Msa0076980:CDS 30.0%
!!! ACATTTTTTGGTTCATAGGT+GGG - chr1_2:53433656-53433675 Msa0076980:CDS 30.0%
!! GTAAGCTTTATTGACTTCTT+AGG - chr1_2:53433720-53433739 Msa0076980:CDS 30.0%
GAATGAATGTCACAAAATAG+TGG - chr1_2:53433743-53433762 Msa0076980:CDS 30.0%
! CCGTATATGTAGTTTTTGTG+TGG + chr1_2:53430999-53431018 None:intergenic 35.0%
!! GTTTTGGTACTTTTCTTCTG+AGG + chr1_2:53431038-53431057 None:intergenic 35.0%
!!! TGATGTCAGATTTCTGGTTT+TGG + chr1_2:53431054-53431073 None:intergenic 35.0%
AAATGCTGATGTCAGATTTC+TGG + chr1_2:53431060-53431079 None:intergenic 35.0%
TCTTGAAACTCATTGATCAC+TGG - chr1_2:53431319-53431338 Msa0076980:three_prime_UTR 35.0%
ATTTACTACCAGGCATGATT+TGG + chr1_2:53431413-53431432 None:intergenic 35.0%
ATTTATTCCACCAACGCTTT+GGG - chr1_2:53431583-53431602 Msa0076980:intron 35.0%
ACAACACTGAATATGAAGCA+CGG + chr1_2:53431824-53431843 None:intergenic 35.0%
GCACAGATTGCAAAAAATAG+TGG - chr1_2:53431847-53431866 Msa0076980:intron 35.0%
TAGCCGCTATTTAACAACAT+TGG - chr1_2:53431912-53431931 Msa0076980:intron 35.0%
! GCTATTTAACAACATTGGCT+TGG - chr1_2:53431917-53431936 Msa0076980:intron 35.0%
CATGTCAACAAAGGTTTGTA+TGG - chr1_2:53431979-53431998 Msa0076980:intron 35.0%
! GTAAAAGGAATTTGAGACTG+TGG - chr1_2:53432170-53432189 Msa0076980:CDS 35.0%
! AAGCTATCTTAGAGAGCTTT+TGG - chr1_2:53432347-53432366 Msa0076980:intron 35.0%
ATATTCAATGGCTCATCGAA+TGG - chr1_2:53432583-53432602 Msa0076980:intron 35.0%
! ATTTTCTCCAGCATTAAGCA+GGG - chr1_2:53432697-53432716 Msa0076980:intron 35.0%
TACTGCATATCTGTTCTCTT+TGG - chr1_2:53432753-53432772 Msa0076980:intron 35.0%
ACTGCATATCTGTTCTCTTT+GGG - chr1_2:53432754-53432773 Msa0076980:intron 35.0%
CCAAATGAAGTAGTAATGGT+CGG - chr1_2:53432785-53432804 Msa0076980:intron 35.0%
CAAATGAAGTAGTAATGGTC+GGG - chr1_2:53432786-53432805 Msa0076980:intron 35.0%
AAATGAAGTAGTAATGGTCG+GGG - chr1_2:53432787-53432806 Msa0076980:intron 35.0%
AGCCTTAAAGATGATGTAAG+TGG - chr1_2:53432812-53432831 Msa0076980:intron 35.0%
GATTGTTCATTTGTACCCAA+AGG + chr1_2:53432898-53432917 None:intergenic 35.0%
!! TAGAACTTTTAGGTCCTTTC+TGG + chr1_2:53432984-53433003 None:intergenic 35.0%
TGTAAAAGAACCCTATGACT+CGG - chr1_2:53433071-53433090 Msa0076980:intron 35.0%
TCAAATGCCGGTATTATAAG+TGG + chr1_2:53433153-53433172 None:intergenic 35.0%
CCTTATTGCAAATCAAATGC+CGG + chr1_2:53433165-53433184 None:intergenic 35.0%
GAAAGATATTGCTTCAAGCT+GGG + chr1_2:53433239-53433258 None:intergenic 35.0%
! CAGATGTATTTGGAATTGGA+TGG - chr1_2:53433299-53433318 Msa0076980:intron 35.0%
CGATTTCAAACCAGATTTCA+AGG - chr1_2:53433443-53433462 Msa0076980:intron 35.0%
GAATTGAGTAAACTTCAGAG+AGG + chr1_2:53433476-53433495 None:intergenic 35.0%
ATGATATAAGAATCTGGAGG+AGG - chr1_2:53433565-53433584 Msa0076980:CDS 35.0%
TTTATTCCTCACCTCATGTA+AGG - chr1_2:53433611-53433630 Msa0076980:CDS 35.0%
!!! GACATTTTTTGGTTCATAGG+TGG - chr1_2:53433655-53433674 Msa0076980:CDS 35.0%
! TACTAGTTTCTTTGGATTCG+CGG - chr1_2:53433813-53433832 Msa0076980:five_prime_UTR 35.0%
! TAGTTTTTGTGTGGGACGAA+CGG + chr1_2:53430990-53431009 None:intergenic 40.0%
!!! TGGTACTTTTCTTCTGAGGT+TGG + chr1_2:53431034-53431053 None:intergenic 40.0%
! GAAGAGAAGGAAAGCTTTTG+CGG + chr1_2:53431127-53431146 None:intergenic 40.0%
ATGGAAGGGAAATCAATGAC+GGG + chr1_2:53431231-53431250 None:intergenic 40.0%
CATGGAAGGGAAATCAATGA+CGG + chr1_2:53431232-53431251 None:intergenic 40.0%
GTACTGCTTTGTACATGGAA+GGG + chr1_2:53431245-53431264 None:intergenic 40.0%
AGTACTGCTTTGTACATGGA+AGG + chr1_2:53431246-53431265 None:intergenic 40.0%
TCCATGTACAAAGCAGTACT+CGG - chr1_2:53431246-53431265 Msa0076980:three_prime_UTR 40.0%
!! TCAAGATATCGATTCCAGCA+GGG + chr1_2:53431305-53431324 None:intergenic 40.0%
!! TTCAAGATATCGATTCCAGC+AGG + chr1_2:53431306-53431325 None:intergenic 40.0%
TTAGGAGGGGTTTGATTACA+AGG - chr1_2:53431541-53431560 Msa0076980:intron 40.0%
GATTTATTCCACCAACGCTT+TGG - chr1_2:53431582-53431601 Msa0076980:intron 40.0%
TTTATTCCACCAACGCTTTG+GGG - chr1_2:53431584-53431603 Msa0076980:intron 40.0%
! GTAATTATGTGTGTCGGTGT+CGG + chr1_2:53431738-53431757 None:intergenic 40.0%
CTGAATATGAAGCACGGATA+CGG + chr1_2:53431818-53431837 None:intergenic 40.0%
! GAATTTGAGACTGTGGCATT+TGG - chr1_2:53432177-53432196 Msa0076980:CDS 40.0%
AAATGTAATCTGCAGCAACG+AGG + chr1_2:53432681-53432700 None:intergenic 40.0%
! CATTTTCTCCAGCATTAAGC+AGG - chr1_2:53432696-53432715 Msa0076980:intron 40.0%
AGAGAACAGATATGCAGTAG+TGG + chr1_2:53432752-53432771 None:intergenic 40.0%
CCGACCATTACTACTTCATT+TGG + chr1_2:53432788-53432807 None:intergenic 40.0%
! AGCCATAATTTGTCCACCTT+TGG - chr1_2:53432879-53432898 Msa0076980:intron 40.0%
! GCCATAATTTGTCCACCTTT+GGG - chr1_2:53432880-53432899 Msa0076980:intron 40.0%
ACCCAAAGGTGGACAAATTA+TGG + chr1_2:53432884-53432903 None:intergenic 40.0%
TGTTCATTTGTACCCAAAGG+TGG + chr1_2:53432895-53432914 None:intergenic 40.0%
! GGTCCTTTCACTATGCATTT+TGG - chr1_2:53433092-53433111 Msa0076980:intron 40.0%
!! CCGGCATTTGATTTGCAATA+AGG - chr1_2:53433162-53433181 Msa0076980:intron 40.0%
ATAAATAAGTGGCCTGCACA+GGG - chr1_2:53433204-53433223 Msa0076980:intron 40.0%
GGAAAGATATTGCTTCAAGC+TGG + chr1_2:53433240-53433259 None:intergenic 40.0%
! ACCATTTTGCAGATTGCTTG+TGG - chr1_2:53433348-53433367 Msa0076980:CDS 40.0%
TCCACAAGCAATCTGCAAAA+TGG + chr1_2:53433352-53433371 None:intergenic 40.0%
! ATTTTGCAGATTGCTTGTGG+AGG - chr1_2:53433351-53433370 Msa0076980:CDS 40.0%
! TTTTGCAGATTGCTTGTGGA+GGG - chr1_2:53433352-53433371 Msa0076980:CDS 40.0%
ACTTGTCTGCTTGATCAAAC+TGG - chr1_2:53433390-53433409 Msa0076980:CDS 40.0%
AGGGAAGTTACCTTGAAATC+TGG + chr1_2:53433456-53433475 None:intergenic 40.0%
GCGAACAAAACTTGAGATCA+TGG + chr1_2:53433522-53433541 None:intergenic 40.0%
TTATGACCTTACATGAGGTG+AGG + chr1_2:53433620-53433639 None:intergenic 40.0%
! ACTAGTTTCTTTGGATTCGC+GGG - chr1_2:53433814-53433833 Msa0076980:five_prime_UTR 40.0%
TGCTAATAACTGATCAGCCT+TGG + chr1_2:53433909-53433928 None:intergenic 40.0%
GGTGGTTAAGTGTGATGACA+TGG + chr1_2:53431157-53431176 None:intergenic 45.0%
TGGAAGGGAAATCAATGACG+GGG + chr1_2:53431230-53431249 None:intergenic 45.0%
GAGCAATGGTATCATAGGCT+TGG + chr1_2:53431362-53431381 None:intergenic 45.0%
! TACTACCAGGCATGATTTGG+AGG + chr1_2:53431410-53431429 None:intergenic 45.0%
TAAAACTGACCCCAAAGCGT+TGG + chr1_2:53431596-53431615 None:intergenic 45.0%
GGACACGGACAACTAATTTG+AGG + chr1_2:53431717-53431736 None:intergenic 45.0%
ATGAAGCACGGATACGGATA+CGG + chr1_2:53431812-53431831 None:intergenic 45.0%
AATGGCTCATCGAATGGTGA+AGG - chr1_2:53432589-53432608 Msa0076980:intron 45.0%
CGAAATTCCCTGCTTAATGC+TGG + chr1_2:53432707-53432726 None:intergenic 45.0%
GGAGCTGGATCAGGTTTATA+AGG + chr1_2:53432731-53432750 None:intergenic 45.0%
AGTGAAAGGACCGAGTCATA+GGG + chr1_2:53433084-53433103 None:intergenic 45.0%
TAGTGAAAGGACCGAGTCAT+AGG + chr1_2:53433085-53433104 None:intergenic 45.0%
CATAAATAAGTGGCCTGCAC+AGG - chr1_2:53433203-53433222 Msa0076980:intron 45.0%
GTCTGCTTGATCAAACTGGA+AGG - chr1_2:53433394-53433413 Msa0076980:intron 45.0%
!!! GATCTCAAGTTTTGTTCGCG+TGG - chr1_2:53433523-53433542 Msa0076980:CDS 45.0%
!!! CGCGTGGACCATTTATTTTG+TGG - chr1_2:53433539-53433558 Msa0076980:CDS 45.0%
GAGGAGGTGACATCTACATT+TGG - chr1_2:53433581-53433600 Msa0076980:CDS 45.0%
GAGGTGACATCTACATTTGG+AGG - chr1_2:53433584-53433603 Msa0076980:CDS 45.0%
ACGCGCAATATCGTGTCAAA+CGG + chr1_2:53433876-53433895 None:intergenic 45.0%
TGCGCGTGTTAAGATTTCCA+AGG - chr1_2:53433889-53433908 Msa0076980:five_prime_UTR 45.0%
! GCTTTTGCGGAAGAGAGCAA+TGG + chr1_2:53431114-53431133 None:intergenic 50.0%
AGTGTGATGACATGGTGCGT+GGG + chr1_2:53431149-53431168 None:intergenic 50.0%
AAGTGTGATGACATGGTGCG+TGG + chr1_2:53431150-53431169 None:intergenic 50.0%
! AGGGAAATCAATGACGGGGA+CGG + chr1_2:53431226-53431245 None:intergenic 50.0%
! GCCGAGTACTGCTTTGTACA+TGG + chr1_2:53431250-53431269 None:intergenic 50.0%
! ATCGATTCCAGCAGGGTTTG+AGG + chr1_2:53431298-53431317 None:intergenic 50.0%
TAGGCTTGGCGTTGTTGATG+TGG + chr1_2:53431348-53431367 None:intergenic 50.0%
GATCACCTCCAAATCATGCC+TGG - chr1_2:53431402-53431421 Msa0076980:CDS 50.0%
! CAGATATGCAGTAGTGGAGC+TGG + chr1_2:53432746-53432765 None:intergenic 50.0%
CGCGCAATATCGTGTCAAAC+GGG + chr1_2:53433875-53433894 None:intergenic 50.0%
ACATGGTGCGTGGGAAGAGA+AGG + chr1_2:53431140-53431159 None:intergenic 55.0%
CCATGTCGAAAACGACGCCA+CGG + chr1_2:53431191-53431210 None:intergenic 55.0%
!! GGCGTCGTTTTCGACATGGA+CGG - chr1_2:53431192-53431211 Msa0076980:three_prime_UTR 55.0%
GTCAAAGCCTCAAACCCTGC+TGG - chr1_2:53431288-53431307 Msa0076980:three_prime_UTR 55.0%
!! AACTGACCCCAAAGCGTTGG+TGG + chr1_2:53431593-53431612 None:intergenic 55.0%
!! ATGTGTGTCGGTGTCGGACA+CGG + chr1_2:53431732-53431751 None:intergenic 55.0%
! TGCAGTAGTGGAGCTGGATC+AGG + chr1_2:53432740-53432759 None:intergenic 55.0%
GGGTTGAAGTTACCCTGTGC+AGG + chr1_2:53433219-53433238 None:intergenic 55.0%
TGTCGAAAACGACGCCACGG+AGG + chr1_2:53431188-53431207 None:intergenic 60.0%
!! CCGTGGCGTCGTTTTCGACA+TGG - chr1_2:53431188-53431207 Msa0076980:three_prime_UTR 60.0%
ATTGCTTGTGGAGGGCGAGC+AGG - chr1_2:53433360-53433379 Msa0076980:CDS 60.0%
ACCACCAAAACGCGCCTCCG+TGG - chr1_2:53431171-53431190 Msa0076980:three_prime_UTR 65.0%
!! GCCACGGAGGCGCGTTTTGG+TGG + chr1_2:53431175-53431194 None:intergenic 70.0%
!! GACGCCACGGAGGCGCGTTT+TGG + chr1_2:53431178-53431197 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 53430969 53433942 53430969 ID=Msa0076980;Name=Msa0076980
chr1_2 mRNA 53430969 53433942 53430969 ID=Msa0076980-mRNA-1;Parent=Msa0076980;Name=Msa0076980-mRNA-1;_AED=0.05;_eAED=0.05;_QI=139|1|1|1|1|1|4|418|239
chr1_2 exon 53430969 53431551 53430969 ID=Msa0076980-mRNA-1:exon:16576;Parent=Msa0076980-mRNA-1
chr1_2 exon 53432085 53432219 53432085 ID=Msa0076980-mRNA-1:exon:16575;Parent=Msa0076980-mRNA-1
chr1_2 exon 53433306 53433409 53433306 ID=Msa0076980-mRNA-1:exon:16574;Parent=Msa0076980-mRNA-1
chr1_2 exon 53433488 53433942 53433488 ID=Msa0076980-mRNA-1:exon:16573;Parent=Msa0076980-mRNA-1
chr1_2 five_prime_UTR 53433804 53433942 53433804 ID=Msa0076980-mRNA-1:five_prime_utr;Parent=Msa0076980-mRNA-1
chr1_2 CDS 53433488 53433803 53433488 ID=Msa0076980-mRNA-1:cds;Parent=Msa0076980-mRNA-1
chr1_2 CDS 53433306 53433409 53433306 ID=Msa0076980-mRNA-1:cds;Parent=Msa0076980-mRNA-1
chr1_2 CDS 53432085 53432219 53432085 ID=Msa0076980-mRNA-1:cds;Parent=Msa0076980-mRNA-1
chr1_2 CDS 53431387 53431551 53431387 ID=Msa0076980-mRNA-1:cds;Parent=Msa0076980-mRNA-1
chr1_2 three_prime_UTR 53430969 53431386 53430969 ID=Msa0076980-mRNA-1:three_prime_utr;Parent=Msa0076980-mRNA-1
Gene Sequence

>Msa0076980

ATGCCATTGCTCTCTTCCGCAAAAGCTTTCCTTCTCTTCCCACGCACCATGTCATCACACTTAACCACCAAAACGCGCCTCCGTGGCGTCGTTTTCGACATGGACGGAACTCTCACCGTCCCCGTCATTGATTTCCCTTCCATGTACAAAGCAGTACTCGGCGACGATGAGTATCTACGCGTCAAAGCCTCAAACCCTGCTGGAATCGATATCTTGAAACTCATTGATCACTGGTCTCCACATCAACAACGCCAAGCCTATGATACCATTGCTCATTTTGAAAAACAGGCTCTCGATCACCTCCAAATCATGCCTGGTGCTTCTGAGCTTTGTAATGTTCTTGATTCAAAGAAAATTAGGAGGGGTTTGATTACAAGGAATATGAAATCTGCTGTTGATTTATTCCACCAACGCTTTGGGATTACATTTTCTCCAGCATTAAGCAGGGAATTTCGTCCTTATAAACCTGATCCAGCTCCACTACTGCATATCTGTTCTCTTTGGGAAGTTCAACCAAATGAAGTAGTAATGGTCGGGGATAGCCTTAAAGATGATATTGCTTGTGGAGGGCGAGCAGGAGCACATACTTGTCTGCTTGATCAAACTGGAAGGTATGATTCTCCCGAATATGCTAATGTCGATTTCAAACCAGATTTCAAGGTAACTTCCCTCTCTGAAGTTTACTCAATTCTTGAGACAAATTTTGAATTGGCACCATGA

Protein sequence

>Msa0076980

MPLLSSAKAFLLFPRTMSSHLTTKTRLRGVVFDMDGTLTVPVIDFPSMYKAVLGDDEYLRVKASNPAGIDILKLIDHWSPHQQRQAYDTIAHFEKQALDHLQIMPGASELCNVLDSKKIRRGLITRNMKSAVDLFHQRFGITFSPALSREFRPYKPDPAPLLHICSLWEVQPNEVVMVGDSLKDDIACGGRAGAHTCLLDQTGRYDSPEYANVDFKPDFKVTSLSEVYSILETNFELAP*