AlfalfaGEDB | Msa0076980

M. sativa cultivar zhongmu-4 / Msa0076980

KEGG: -
GO: GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464
PFAM: PF13419.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0076980	XP_003590727.2	95.816	239	10	0	1	239	1	239	9.60e-171	479

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0076980	sp\|Q8RYE9\|GPPL3_ARATH	68.161	223	69	1	19	239	23	245	1.28e-114	331

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0076980	G7I2P1	95.816	239	10	0	1	239	1	239	4.59e-171	479

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001040	Msa0076980	0.804250	2.363838e-49	-8.615850e-47
Msa0001510	Msa0076980	0.840523	8.263587e-58	-8.615850e-47
Msa0002110	Msa0076980	0.829821	4.153917e-55	-8.615850e-47
Msa0002690	Msa0076980	0.846761	1.773183e-59	-8.615850e-47
Msa0002700	Msa0076980	0.837852	4.068952e-57	-8.615850e-47
Msa0003340	Msa0076980	0.848839	4.746294e-60	-8.615850e-47
Msa0004180	Msa0076980	0.861377	1.070701e-63	-8.615850e-47
Msa0007570	Msa0076980	0.834297	3.251611e-56	-8.615850e-47
Msa0007810	Msa0076980	0.818042	2.408825e-52	-8.615850e-47
Msa0011060	Msa0076980	0.812154	4.889382e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0076980	MtrunA17_Chr1g0186031	95.816	239	10	0	1	239	1	239	8.83e-175	479

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0076980	AT2G33255.1	68.161	223	69	1	19	239	23	245	1.31e-115	331

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Find 83 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGAGCAATGGTATCAT+AGG	0.361847	1_2:+53433525	None:intergenic
AAATCGACATTAGCATATTC+GGG	0.370379	1_2:+53431463	None:intergenic
AAATGAAGTAGTAATGGTCG+GGG	0.605638	1_2:-53432102	Msa0076980:CDS
AAATGCTGATGTCAGATTTC+TGG	0.175133	1_2:+53433832	None:intergenic
AACCACTTACATCATCTTTA+AGG	0.144402	1_2:+53432075	None:intergenic
AACTGACCCCAAAGCGTTGG+TGG	0.483746	1_2:+53433299	None:intergenic
AAGTGTGATGACATGGTGCG+TGG	0.628658	1_2:+53433742	None:intergenic
AATAATGTTGTATCATATCT+TGG	0.360992	1_2:-53431201	Msa0076980:three_prime_UTR
AATCCAAAGAAACTAGTAAT+AGG	0.348757	1_2:+53431081	None:intergenic
AATTGAGTAAACTTCAGAGA+GGG	0.606847	1_2:+53431417	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CCACACAAAAACTACATATA+CGG	-	chr1_2:53430996-53431015	Msa0076980:three_prime_UTR	30.0%
AAAATGAGCAATGGTATCAT+AGG	+	chr1_2:53431367-53431386	None:intergenic	30.0%
AAAAGTAGGTATTTACTACC+AGG	+	chr1_2:53431423-53431442	None:intergenic	30.0%
GATTCAAAGAAAATTAGGAG+GGG	-	chr1_2:53431528-53431547	Msa0076980:CDS	30.0%
TACTTACAACTATTCAGAGT+TGG	-	chr1_2:53431636-53431655	Msa0076980:intron	30.0%
TTTACATTACACAATTGGGT+TGG	-	chr1_2:53431665-53431684	Msa0076980:intron	30.0%
TTTCAAATTATTAGCGGTGT+CGG	-	chr1_2:53431775-53431794	Msa0076980:intron	30.0%
AAGCCAATGTTGTTAAATAG+CGG	+	chr1_2:53431918-53431937	None:intergenic	30.0%
CATTATTGTCATGTCAACAA+AGG	-	chr1_2:53431970-53431989	Msa0076980:intron	30.0%
ATTGGCTGTAGTTTCAATAT+TGG	-	chr1_2:53432081-53432100	Msa0076980:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	53430969	53433942	53430969	ID=Msa0076980;Name=Msa0076980
chr1_2	mRNA	53430969	53433942	53430969	ID=Msa0076980-mRNA-1;Parent=Msa0076980;Name=Msa0076980-mRNA-1;_AED=0.05;_eAED=0.05;_QI=139\|1\|1\|1\|1\|1\|4\|418\|239
chr1_2	exon	53430969	53431551	53430969	ID=Msa0076980-mRNA-1:exon:16576;Parent=Msa0076980-mRNA-1
chr1_2	exon	53432085	53432219	53432085	ID=Msa0076980-mRNA-1:exon:16575;Parent=Msa0076980-mRNA-1
chr1_2	exon	53433306	53433409	53433306	ID=Msa0076980-mRNA-1:exon:16574;Parent=Msa0076980-mRNA-1
chr1_2	exon	53433488	53433942	53433488	ID=Msa0076980-mRNA-1:exon:16573;Parent=Msa0076980-mRNA-1
chr1_2	five_prime_UTR	53433804	53433942	53433804	ID=Msa0076980-mRNA-1:five_prime_utr;Parent=Msa0076980-mRNA-1
chr1_2	CDS	53433488	53433803	53433488	ID=Msa0076980-mRNA-1:cds;Parent=Msa0076980-mRNA-1
chr1_2	CDS	53433306	53433409	53433306	ID=Msa0076980-mRNA-1:cds;Parent=Msa0076980-mRNA-1
chr1_2	CDS	53432085	53432219	53432085	ID=Msa0076980-mRNA-1:cds;Parent=Msa0076980-mRNA-1
chr1_2	CDS	53431387	53431551	53431387	ID=Msa0076980-mRNA-1:cds;Parent=Msa0076980-mRNA-1
chr1_2	three_prime_UTR	53430969	53431386	53430969	ID=Msa0076980-mRNA-1:three_prime_utr;Parent=Msa0076980-mRNA-1

Gene Sequence

>Msa0076980

ATGCCATTGCTCTCTTCCGCAAAAGCTTTCCTTCTCTTCCCACGCACCATGTCATCACACTTAACCACCAAAACGCGCCTCCGTGGCGTCGTTTTCGACATGGACGGAACTCTCACCGTCCCCGTCATTGATTTCCCTTCCATGTACAAAGCAGTACTCGGCGACGATGAGTATCTACGCGTCAAAGCCTCAAACCCTGCTGGAATCGATATCTTGAAACTCATTGATCACTGGTCTCCACATCAACAACGCCAAGCCTATGATACCATTGCTCATTTTGAAAAACAGGCTCTCGATCACCTCCAAATCATGCCTGGTGCTTCTGAGCTTTGTAATGTTCTTGATTCAAAGAAAATTAGGAGGGGTTTGATTACAAGGAATATGAAATCTGCTGTTGATTTATTCCACCAACGCTTTGGGATTACATTTTCTCCAGCATTAAGCAGGGAATTTCGTCCTTATAAACCTGATCCAGCTCCACTACTGCATATCTGTTCTCTTTGGGAAGTTCAACCAAATGAAGTAGTAATGGTCGGGGATAGCCTTAAAGATGATATTGCTTGTGGAGGGCGAGCAGGAGCACATACTTGTCTGCTTGATCAAACTGGAAGGTATGATTCTCCCGAATATGCTAATGTCGATTTCAAACCAGATTTCAAGGTAACTTCCCTCTCTGAAGTTTACTCAATTCTTGAGACAAATTTTGAATTGGCACCATGA

Protein sequence

>Msa0076980

MPLLSSAKAFLLFPRTMSSHLTTKTRLRGVVFDMDGTLTVPVIDFPSMYKAVLGDDEYLRVKASNPAGIDILKLIDHWSPHQQRQAYDTIAHFEKQALDHLQIMPGASELCNVLDSKKIRRGLITRNMKSAVDLFHQRFGITFSPALSREFRPYKPDPAPLLHICSLWEVQPNEVVMVGDSLKDDIACGGRAGAHTCLLDQTGRYDSPEYANVDFKPDFKVTSLSEVYSILETNFELAP*