AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1444900


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1444900 MtrunA17_Chr4g0069881 96.075 535 21 0 1 535 1 535 0.0 1019
Msa1444900 MtrunA17_Chr2g0302001 80.709 254 47 1 282 535 186 437 5.00e-155 449
Msa1444900 MtrunA17_Chr2g0302001 69.832 179 52 2 1 177 1 179 9.93e-64 214
Msa1444900 MtrunA17_Chr7g0269541 43.376 551 273 15 6 531 16 552 2.91e-143 424
Msa1444900 MtrunA17_Chr8g0354911 44.341 539 249 13 44 535 78 612 3.14e-143 426
Msa1444900 MtrunA17_Chr1g0192331 42.342 555 271 12 1 534 1 527 5.32e-135 402
Msa1444900 MtrunA17_Chr2g0302021 45.455 440 225 8 105 535 92 525 2.59e-134 400
Msa1444900 MtrunA17_Chr1g0147051 39.759 581 278 14 4 535 50 607 1.02e-133 401
Msa1444900 MtrunA17_Chr1g0195331 41.948 534 264 9 41 535 29 555 2.55e-133 399
Msa1444900 MtrunA17_Chr1g0195301 41.760 534 265 9 41 535 29 555 4.32e-133 398
Msa1444900 MtrunA17_Chr1g0195321 41.760 534 265 9 41 535 29 555 4.32e-133 398
Msa1444900 MtrunA17_Chr3g0080381 41.959 541 261 10 44 535 92 628 1.21e-132 399
Msa1444900 MtrunA17_Chr8g0345281 43.074 527 264 12 40 535 68 589 1.51e-131 395
Msa1444900 MtrunA17_Chr7g0272141 38.378 555 309 8 1 535 1 542 2.43e-131 393
Msa1444900 MtrunA17_Chr7g0269511 40.106 566 289 12 8 535 11 564 2.60e-131 394
Msa1444900 MtrunA17_Chr3g0126771 39.688 577 279 14 4 535 45 597 3.93e-131 394
Msa1444900 MtrunA17_Chr7g0269531 40.643 529 269 9 41 531 40 561 1.81e-130 392
Msa1444900 MtrunA17_Chr1g0175661 40.917 567 279 13 7 535 10 558 1.05e-129 389
Msa1444900 MtrunA17_Chr7g0233801 42.348 477 253 7 75 535 83 553 1.74e-129 389
Msa1444900 MtrunA17_Chr1g0195351 41.698 530 261 10 41 531 29 549 2.48e-129 388
Msa1444900 MtrunA17_Chr4g0069841 41.785 493 259 11 54 535 41 516 2.51e-128 384
Msa1444900 MtrunA17_Chr8g0391291 40.647 556 277 14 14 535 3 539 2.99e-128 385
Msa1444900 MtrunA17_Chr8g0391311 42.035 521 258 12 44 535 36 541 3.02e-128 385
Msa1444900 MtrunA17_Chr4g0011791 42.802 521 255 16 29 535 18 509 2.31e-127 382
Msa1444900 MtrunA17_Chr7g0269521 40.713 533 271 10 41 535 37 562 3.34e-127 383
Msa1444900 MtrunA17_Chr8g0354901 41.782 505 268 9 38 524 74 570 6.98e-127 383
Msa1444900 MtrunA17_Chr7g0233831 39.959 488 266 6 67 535 76 555 2.00e-126 380
Msa1444900 MtrunA17_Chr7g0233771 41.053 475 263 7 75 535 83 554 4.39e-125 377
Msa1444900 MtrunA17_Chr3g0080391 40.000 515 281 11 39 535 70 574 2.74e-123 373
Msa1444900 MtrunA17_Chr4g0069861 41.414 495 260 10 54 535 40 517 7.37e-122 368
Msa1444900 MtrunA17_Chr3g0090091 38.911 514 283 10 38 535 30 528 6.00e-121 366
Msa1444900 MtrunA17_Chr4g0011771 39.522 544 277 14 4 531 2 509 1.08e-120 365
Msa1444900 MtrunA17_Chr3g0079361 39.250 507 290 10 38 535 30 527 1.43e-120 365
Msa1444900 MtrunA17_Chr3g0079351 37.684 544 313 12 1 535 1 527 2.50e-120 364
Msa1444900 MtrunA17_Chr3g0079341 39.250 507 290 10 38 535 30 527 5.86e-120 363
Msa1444900 MtrunA17_Chr4g0011751 40.588 510 258 13 37 535 14 489 3.48e-119 360
Msa1444900 MtrunA17_Chr4g0018371 39.530 511 287 10 40 535 36 539 7.68e-118 358
Msa1444900 MtrunA17_Chr7g0272151 35.182 577 313 11 6 534 19 582 5.92e-115 352
Msa1444900 MtrunA17_Chr1g0192321 36.813 546 293 13 31 534 47 582 4.66e-111 342
Msa1444900 MtrunA17_Chr1g0192311 35.534 515 309 9 37 531 55 566 4.03e-109 337
Msa1444900 MtrunA17_Chr1g0192281 35.534 515 309 9 37 531 55 566 4.03e-109 337
Msa1444900 MtrunA17_Chr4g0000121 36.449 535 305 12 21 531 30 553 1.10e-108 335
Msa1444900 MtrunA17_Chr1g0192301 36.449 535 305 12 21 531 48 571 1.10e-108 336
Msa1444900 MtrunA17_Chr1g0194091 38.046 481 257 8 87 531 90 565 1.63e-107 332
Msa1444900 MtrunA17_Chr1g0195311 55.805 267 116 1 269 535 50 314 1.20e-106 322
Msa1444900 MtrunA17_Chr8g0345211 39.114 519 284 14 38 535 75 582 1.16e-105 328
Msa1444900 MtrunA17_Chr7g0270691 36.187 514 305 11 40 534 39 548 3.59e-100 313
Msa1444900 MtrunA17_Chr4g0069891 36.590 522 296 12 40 535 81 593 1.74e-99 312
Msa1444900 MtrunA17_Chr1g0194081 34.747 495 282 11 69 534 80 562 2.42e-94 298
Msa1444900 MtrunA17_Chr7g0270661 37.558 434 229 8 105 502 108 535 8.45e-91 289
Msa1444900 MtrunA17_Chr7g0270671 37.558 434 229 8 105 502 108 535 8.45e-91 289
Msa1444900 MtrunA17_Chr7g0270651 35.938 448 244 8 105 515 108 549 9.60e-91 289
Msa1444900 MtrunA17_Chr8g0384121 34.397 564 309 15 8 534 24 563 1.20e-90 289
Msa1444900 MtrunA17_Chr3g0129921 33.993 556 319 15 8 534 27 563 4.24e-87 279
Msa1444900 MtrunA17_Chr4g0067611 33.652 523 309 13 40 534 59 571 3.86e-86 277
Msa1444900 MtrunA17_Chr7g0234711 51.724 232 110 2 305 535 39 269 5.71e-86 266
Msa1444900 MtrunA17_Chr4g0067601 33.141 519 317 11 40 534 59 571 1.15e-85 276
Msa1444900 MtrunA17_Chr2g0295531 31.712 514 315 11 40 531 43 542 3.03e-83 270
Msa1444900 MtrunA17_Chr2g0301931 45.105 286 151 3 250 535 13 292 4.15e-82 258
Msa1444900 MtrunA17_Chr7g0270631 34.956 452 243 9 105 515 96 537 2.94e-81 275
Msa1444900 MtrunA17_Chr7g0270631 34.590 451 254 9 105 515 644 1093 4.98e-71 246
Msa1444900 MtrunA17_Chr5g0437831 42.433 337 179 6 207 534 52 382 8.20e-81 257
Msa1444900 MtrunA17_Chr2g0295551 32.571 525 307 14 40 534 56 563 2.52e-80 261
Msa1444900 MtrunA17_Chr8g0380581 40.061 327 192 4 207 531 48 372 6.05e-79 252
Msa1444900 MtrunA17_Chr7g0268241 41.121 321 174 5 217 535 43 350 1.72e-77 248
Msa1444900 MtrunA17_Chr2g0295541 30.811 555 308 15 40 534 56 594 1.58e-73 244
Msa1444900 MtrunA17_Chr2g0334111 39.688 320 173 5 219 535 21 323 1.62e-73 236
Msa1444900 MtrunA17_Chr7g0271381 29.672 519 328 12 35 534 55 555 1.48e-63 217
Msa1444900 MtrunA17_Chr6g0453551 37.255 306 167 5 223 518 5 295 1.06e-57 194
Msa1444900 MtrunA17_Chr7g0217941 35.948 306 171 6 223 518 5 295 6.05e-54 185
Msa1444900 MtrunA17_Chr1g0194311 34.104 346 194 7 189 524 47 368 1.23e-52 183
Msa1444900 MtrunA17_Chr6g0487101 37.171 304 164 9 232 524 93 380 5.25e-52 181
Msa1444900 MtrunA17_Chr8g0389771 36.039 308 168 9 232 526 88 379 3.33e-51 179
Msa1444900 MtrunA17_Chr6g0466961 36.218 312 171 8 224 529 40 329 3.89e-51 177
Msa1444900 MtrunA17_Chr6g0466951 33.333 312 180 9 224 529 69 358 1.22e-49 174
Msa1444900 MtrunA17_Chr7g0258341 33.651 315 186 6 220 524 86 387 7.20e-47 168
Msa1444900 MtrunA17_Chr5g0446301 35.714 308 168 8 230 524 67 357 8.33e-47 167
Msa1444900 MtrunA17_Chr5g0399221 31.420 331 198 8 209 527 49 362 4.70e-46 165
Msa1444900 MtrunA17_Chr1g0161731 31.034 319 196 6 213 524 38 339 1.29e-44 160
Msa1444900 MtrunA17_Chr7g0265201 34.641 306 172 7 226 524 101 385 1.28e-42 156
Msa1444900 MtrunA17_Chr4g0070051 29.412 323 199 7 211 524 41 343 1.59e-42 155
Msa1444900 MtrunA17_Chr8g0351871 31.833 311 183 8 223 524 32 322 1.17e-38 144
Msa1444900 MtrunA17_Chr2g0294321 32.063 315 186 8 219 524 51 346 5.01e-38 143
Msa1444900 MtrunA17_Chr5g0440871 32.268 313 185 7 212 524 33 318 2.42e-35 135
Msa1444900 MtrunA17_Chr8g0391261 45.985 137 71 2 400 535 32 166 3.64e-35 129
Msa1444900 MtrunA17_Chr4g0037751 30.744 309 192 9 222 524 69 361 1.74e-33 130
Msa1444900 MtrunA17_Chr2g0299431 36.036 222 129 6 214 427 40 256 8.64e-33 127
Msa1444900 MtrunA17_Chr5g0420831 30.824 279 173 7 223 495 70 334 6.63e-32 126
Msa1444900 MtrunA17_Chr2g0295851 29.114 316 185 10 219 524 50 336 1.58e-30 122
Msa1444900 MtrunA17_Chr8g0391281 32.759 290 154 10 44 305 34 310 1.61e-29 118
Msa1444900 MtrunA17_Chr6g0459781 34.682 173 101 4 223 385 12 182 1.67e-27 110
Msa1444900 MtrunA17_Chr4g0025841 30.400 250 157 4 224 473 37 269 3.18e-26 107
Msa1444900 MtrunA17_Chr5g0437821 39.259 135 81 1 337 470 4 138 2.42e-25 101
Msa1444900 MtrunA17_Chr7g0265161 35.838 173 78 4 298 465 14 158 6.15e-23 97.8
Msa1444900 MtrunA17_Chr5g0440901 34.043 141 84 1 329 469 13 144 1.97e-21 90.9
Msa1444900 MtrunA17_Chr7g0234731 29.197 274 178 8 38 303 49 314 2.29e-21 95.1
Msa1444900 MtrunA17_Chr2g0314691 33.333 177 101 5 321 496 15 175 1.80e-20 89.7
Msa1444900 MtrunA17_Chr5g0440891 34.524 168 101 3 222 388 46 205 3.04e-18 83.6
Msa1444900 MtrunA17_Chr6g0460141 36.842 133 76 3 254 378 7 139 9.78e-17 77.4
Msa1444900 MtrunA17_Chr6g0459791 36.000 125 68 3 400 524 4 116 6.80e-16 73.9
Msa1444900 MtrunA17_Chr4g0073911 30.058 173 106 6 254 417 38 204 7.11e-13 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1444900 AT2G26440.1 61.996 521 179 6 32 535 29 547 0.0 650
Msa1444900 AT4G33220.1 45.714 490 233 9 74 535 39 523 4.82e-143 422
Msa1444900 AT3G43270.1 48.230 452 207 9 105 535 80 525 5.00e-140 415
Msa1444900 AT4G02330.1 41.368 585 275 14 4 535 2 571 5.56e-138 411
Msa1444900 AT1G02810.1 40.168 595 275 13 4 535 1 577 1.20e-136 408
Msa1444900 AT4G33220.2 49.630 405 179 7 153 535 1 402 9.58e-134 394
Msa1444900 AT4G02320.1 43.326 487 245 8 68 531 36 514 8.86e-133 396
Msa1444900 AT3G05620.1 44.321 449 221 5 105 535 104 541 1.56e-132 396
Msa1444900 AT1G53830.1 41.392 546 275 12 24 531 45 583 5.94e-128 386
Msa1444900 AT2G47550.1 44.731 465 220 7 104 535 98 558 3.28e-126 380
Msa1444900 AT4G02300.1 42.531 482 258 6 69 534 53 531 5.16e-126 379
Msa1444900 AT3G10720.2 38.447 541 276 12 44 535 83 615 1.00e-125 381
Msa1444900 AT3G49220.1 41.923 520 270 10 39 535 86 596 1.12e-124 378
Msa1444900 AT3G14310.1 39.179 536 284 9 40 535 59 592 3.08e-124 377
Msa1444900 AT3G49220.3 41.923 520 270 10 39 535 131 641 3.45e-124 378
Msa1444900 AT5G53370.1 40.504 516 284 10 39 535 74 585 3.71e-124 376
Msa1444900 AT5G53370.2 40.504 516 284 10 39 535 110 621 1.54e-123 376
Msa1444900 AT5G51500.1 40.154 518 285 8 30 531 28 536 2.15e-123 373
Msa1444900 AT3G10710.1 40.316 506 280 10 39 535 69 561 4.90e-123 372
Msa1444900 AT1G11580.1 42.350 451 240 8 95 533 113 555 3.96e-122 370
Msa1444900 AT1G11580.2 42.350 451 240 8 95 533 134 576 5.35e-122 370
Msa1444900 AT5G51490.1 40.711 506 281 9 43 535 37 536 1.16e-121 368
Msa1444900 AT5G04970.1 38.476 538 280 11 44 535 88 620 7.27e-121 369
Msa1444900 AT2G43050.1 43.172 454 223 11 94 535 86 516 9.16e-118 357
Msa1444900 AT5G04960.1 38.386 508 286 11 39 532 67 561 4.81e-117 357
Msa1444900 AT1G23200.1 38.534 532 272 13 44 535 38 554 1.28e-116 356
Msa1444900 AT5G27870.1 37.187 519 296 9 37 535 54 562 8.26e-115 357
Msa1444900 AT3G60730.1 44.573 433 196 9 137 535 97 519 1.43e-114 349
Msa1444900 AT3G59010.1 44.595 444 215 12 106 535 102 528 5.61e-114 348
Msa1444900 AT4G00190.1 39.357 498 259 14 43 531 7 470 3.34e-113 344
Msa1444900 AT3G05610.1 35.932 526 303 10 33 535 51 565 3.04e-112 348
Msa1444900 AT2G45220.1 40.039 517 254 16 40 535 30 511 4.69e-112 343
Msa1444900 AT3G47400.1 37.170 530 274 12 43 535 87 594 3.40e-111 343
Msa1444900 AT1G53840.1 38.060 536 287 13 24 527 57 579 1.30e-110 341
Msa1444900 AT5G49180.1 35.036 548 328 9 10 531 21 566 9.16e-109 336
Msa1444900 AT2G26450.1 36.986 511 299 8 40 535 109 611 3.85e-108 336
Msa1444900 AT4G33230.1 37.572 519 294 12 40 535 95 606 8.09e-108 335
Msa1444900 AT5G20860.2 39.545 440 240 7 109 535 112 538 9.72e-106 327
Msa1444900 AT4G03930.1 39.770 435 246 7 110 535 97 524 2.26e-105 326
Msa1444900 AT3G10720.1 54.023 261 118 1 275 535 1 259 6.20e-105 315
Msa1444900 AT1G11590.1 39.168 457 251 9 95 535 79 524 1.57e-104 323
Msa1444900 AT3G27980.1 42.289 402 215 7 140 535 107 497 4.36e-104 322
Msa1444900 AT3G14300.1 38.150 519 272 16 38 524 457 958 4.72e-103 332
Msa1444900 AT3G06830.1 34.043 517 315 9 39 531 50 564 8.46e-96 302
Msa1444900 AT1G11370.1 52.066 242 116 0 224 465 46 287 3.30e-88 273
Msa1444900 AT5G20860.1 36.277 419 213 6 109 514 112 489 7.58e-86 275
Msa1444900 AT4G15980.1 42.903 310 174 2 224 532 392 699 2.10e-80 266
Msa1444900 AT4G15980.2 42.903 310 174 2 224 532 402 709 4.70e-80 265
Msa1444900 AT5G09760.1 33.461 523 292 15 38 523 43 546 7.11e-80 260
Msa1444900 AT5G09760.2 33.461 523 292 15 38 523 69 572 2.33e-79 259
Msa1444900 AT5G64640.1 32.775 537 292 18 37 528 90 602 1.48e-76 253
Msa1444900 AT3G62170.1 41.083 314 179 4 225 535 278 588 6.80e-70 235
Msa1444900 AT2G47030.1 28.353 589 347 15 10 535 12 588 7.55e-69 232
Msa1444900 AT2G47040.1 41.083 314 179 4 225 535 285 595 8.11e-67 227
Msa1444900 AT3G29090.1 35.806 310 174 6 219 518 2 296 1.22e-55 189
Msa1444900 AT2G36710.1 37.231 325 181 7 207 524 77 385 6.76e-54 187
Msa1444900 AT5G19730.1 37.500 304 163 8 232 524 94 381 3.41e-53 185
Msa1444900 AT1G05310.1 35.220 318 177 6 220 524 87 388 1.29e-51 181
Msa1444900 AT2G36700.1 35.505 307 179 5 223 524 41 333 2.29e-49 173
Msa1444900 AT5G47500.1 31.611 329 198 8 208 524 44 357 9.08e-49 172
Msa1444900 AT3G17060.1 34.185 313 182 7 219 524 41 336 2.23e-47 168
Msa1444900 AT2G21610.1 36.066 305 170 9 223 524 50 332 2.45e-46 166
Msa1444900 AT2G21610.2 36.066 305 170 9 223 524 55 337 3.16e-46 166
Msa1444900 AT5G55590.1 34.713 314 177 8 223 524 81 378 5.61e-45 163
Msa1444900 AT5G55590.2 36.293 259 141 6 223 469 81 327 3.54e-42 154
Msa1444900 AT5G07430.1 32.372 312 189 7 218 524 61 355 4.03e-42 155
Msa1444900 AT1G44980.1 46.061 165 89 0 224 388 78 242 2.64e-41 149
Msa1444900 AT5G18990.1 30.892 314 191 7 197 499 2 300 4.69e-39 145
Msa1444900 AT3G24130.1 30.189 318 194 7 224 530 34 334 6.76e-39 145
Msa1444900 AT5G61680.1 31.111 315 190 9 218 524 63 358 3.19e-37 141
Msa1444900 AT5G07420.1 31.529 314 189 8 218 524 61 355 4.94e-37 140
Msa1444900 AT2G19150.1 33.684 285 164 7 224 499 41 309 1.19e-35 136
Msa1444900 AT1G69940.1 29.712 313 196 9 218 524 61 355 4.68e-35 135
Msa1444900 AT5G07410.1 29.712 313 196 9 218 524 61 355 7.77e-35 134
Msa1444900 AT5G26810.1 31.529 314 192 6 222 524 32 333 1.77e-34 133
Msa1444900 AT2G19150.2 33.597 253 145 6 224 467 41 279 1.24e-31 124
Msa1444900 AT2G47280.1 30.745 322 191 10 224 534 35 335 1.43e-31 125
Msa1444900 AT3G49220.2 32.343 303 159 10 39 312 131 416 2.72e-27 114

Find 88 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGACAATAGATTACATATT+TGG 0.158912 tig0030854:+27208 Msa1444900:CDS
TATGGTGAGTTTGCAAATTA+TGG 0.168452 tig0030854:+27541 Msa1444900:CDS
ATCCTAGCATAGCTGTTATT+TGG 0.183966 tig0030854:-26455 None:intergenic
GCAAATTATGGACCTGGTTC+TGG 0.184725 tig0030854:+27553 Msa1444900:CDS
GGCCTTGGAGGGTTTATTCT+AGG 0.265089 tig0030854:+27422 Msa1444900:CDS
TAGCTAAAATCGAACAGTTT+TGG 0.265371 tig0030854:-27351 None:intergenic
GGGTTGGACACTTTGTATTA+TGG 0.267381 tig0030854:+27523 Msa1444900:CDS
ACATGGAAACCGGCGTTTAA+TGG 0.268525 tig0030854:+26307 Msa1444900:CDS
ACTGTTTCAGAGTTTATTAT+TGG 0.274401 tig0030854:+27640 Msa1444900:CDS
GAAAGCTTAGATTCTGCTTC+AGG 0.295028 tig0030854:+26182 Msa1444900:CDS
ATCACCAAGTAGAACAATAT+TGG 0.295403 tig0030854:-26537 None:intergenic
ATGGTTAGGGTATCATTTAA+TGG 0.316270 tig0030854:+27594 Msa1444900:CDS
GATGAATTGAAGCAAACTTC+AGG 0.327484 tig0030854:-25870 None:intergenic
AAAGTCAATGGCTTCATTAA+TGG 0.338627 tig0030854:-26429 None:intergenic
TGGTCTTATGATGATGATAA+AGG 0.352618 tig0030854:+27502 Msa1444900:CDS
TTCTAAACATGTGTTCTTGT+TGG 0.356337 tig0030854:-26162 None:intergenic
ACCTTCAGATCTGCAACTTT+AGG 0.361505 tig0030854:+26614 Msa1444900:CDS
AGAAGGATGTTAATGATGTT+TGG 0.368270 tig0030854:-25921 None:intergenic
CAAATTATGGACCTGGTTCT+GGG 0.376661 tig0030854:+27554 Msa1444900:CDS
CTGTCAGCGGTTTCTGGTGA+AGG 0.388701 tig0030854:+27010 Msa1444900:intron
GCAACTGCTTGATGCTTCTC+TGG 0.401565 tig0030854:-27073 None:intergenic
GATAACCGAGTGAAATGGTT+AGG 0.402758 tig0030854:+27580 Msa1444900:CDS
TCCATCAACATCACTTCTAT+TGG 0.413607 tig0030854:-26585 None:intergenic
AACATGTGTTCTTGTTGGTA+AGG 0.427562 tig0030854:-26157 None:intergenic
GAAGCTCTTACCTCAGGCTT+AGG 0.446698 tig0030854:-26278 None:intergenic
AGTTTATTATTGGTGATGCT+TGG 0.457881 tig0030854:+27650 Msa1444900:CDS
CCTTTAGAAGCTCTTACCTC+AGG 0.459729 tig0030854:-26284 None:intergenic
CTTCTAAAGGACATGGAAAC+CGG 0.462530 tig0030854:+26297 Msa1444900:CDS
AAAACCAATATTGTTCTACT+TGG 0.463086 tig0030854:+26533 Msa1444900:CDS
ATGAATTGAAGCAAACTTCA+GGG 0.465621 tig0030854:-25869 None:intergenic
ATTATTGGTGATGCTTGGAT+TGG 0.469612 tig0030854:+27655 Msa1444900:CDS
ATAATAATCTATGTGAAAGA+AGG 0.472192 tig0030854:+26476 Msa1444900:CDS
AGAGTTACCTTGGAAGGCCT+TGG 0.474243 tig0030854:+27407 Msa1444900:CDS
GATCAAATCCCATCATCATA+AGG 0.490605 tig0030854:-27691 None:intergenic
GTTATTTGGAGCAAAGTCAA+TGG 0.493661 tig0030854:-26441 None:intergenic
GCCAATAGAAGTGATGTTGA+TGG 0.496027 tig0030854:+26584 Msa1444900:CDS
TTGAAGCAAACTTCAGGGTA+TGG 0.499680 tig0030854:-25864 None:intergenic
CGGTTATCCGTCCCAGAACC+AGG 0.500538 tig0030854:-27565 None:intergenic
GAAATGCCAGTGTCTTCATC+AGG 0.503049 tig0030854:-27325 None:intergenic
AATATTGTTCTACTTGGTGA+TGG 0.507544 tig0030854:+26539 Msa1444900:CDS
TTTCAGATATTGATACTTGG+AGG 0.508364 tig0030854:-25950 None:intergenic
AGCCACAACAATCACATTGT+CGG 0.515378 tig0030854:-26381 None:intergenic
GGACGGATAACCGAGTGAAA+TGG 0.516534 tig0030854:+27575 Msa1444900:CDS
TAATAATCTATGTGAAAGAA+GGG 0.519631 tig0030854:+26477 Msa1444900:CDS
TGATGTGTTCATTGATCCAA+TGG 0.520276 tig0030854:+27468 Msa1444900:CDS
GTTACCTTGGAAGGCCTTGG+AGG 0.522680 tig0030854:+27410 Msa1444900:CDS
GGTCTTATGATGATGATAAA+GGG 0.524014 tig0030854:+27503 Msa1444900:CDS
AACATCATAGAGAACAAAAG+AGG 0.532418 tig0030854:+26011 Msa1444900:CDS
GTGATTGTTGTGGCTGCAGA+TGG 0.533920 tig0030854:+26389 Msa1444900:CDS
TGGTTTCAGATATTGATACT+TGG 0.536909 tig0030854:-25953 None:intergenic
GAATTGATTAGATAGCTTTG+TGG 0.536977 tig0030854:-25973 None:intergenic
ACAGTGTATTGGTTAGGTAA+TGG 0.537504 tig0030854:-27277 None:intergenic
TGAAAGCTAAAGTGTGTGAA+TGG 0.538443 tig0030854:-25770 None:intergenic
GTTGTGGCTGCAGATGGAAC+TGG 0.540466 tig0030854:+26395 Msa1444900:CDS
TTCAGATATTGATACTTGGA+GGG 0.549415 tig0030854:-25949 None:intergenic
ACATGTGTTCTTGTTGGTAA+GGG 0.551234 tig0030854:-26156 None:intergenic
ACCTAAAGTTGCAGATCTGA+AGG 0.551357 tig0030854:-26615 None:intergenic
ATACTTGGAGGGAATGAAGA+AGG 0.552774 tig0030854:-25938 None:intergenic
AACAACATGAAGAGTTACCT+TGG 0.555010 tig0030854:+27397 Msa1444900:CDS
GTGATGACAGTGTATTGGTT+AGG 0.562594 tig0030854:-27283 None:intergenic
TTATGATGATGATAAAGGGT+TGG 0.572416 tig0030854:+27507 Msa1444900:CDS
GACCACTTAGTCCATCCCAT+TGG 0.576798 tig0030854:-27484 None:intergenic
TTACCTTGGAAGGCCTTGGA+GGG 0.578441 tig0030854:+27411 Msa1444900:CDS
AAACCCTCCAAGGCCTTCCA+AGG 0.578788 tig0030854:-27414 None:intergenic
GTGCAGTGATGACAGTGTAT+TGG 0.580428 tig0030854:-27288 None:intergenic
ATAACCGAGTGAAATGGTTA+GGG 0.580443 tig0030854:+27581 Msa1444900:CDS
ATCCAATGGGATGGACTAAG+TGG 0.585499 tig0030854:+27482 Msa1444900:CDS
GTAAGAGCTTCTAAAGGACA+TGG 0.586185 tig0030854:+26290 Msa1444900:CDS
ACATGAAGAGTTACCTTGGA+AGG 0.588730 tig0030854:+27401 Msa1444900:CDS
GAGTTTGCAAATTATGGACC+TGG 0.593606 tig0030854:+27547 Msa1444900:CDS
AGTGAACATAAAGTGTGTCT+TGG 0.595293 tig0030854:-27150 None:intergenic
CTCCAAATAACAGCTATGCT+AGG 0.598592 tig0030854:+26453 Msa1444900:CDS
GTTTAATGGATTCTCTCATG+TGG 0.602528 tig0030854:+26321 Msa1444900:CDS
TTATGGACCTGGTTCTGGGA+CGG 0.609432 tig0030854:+27558 Msa1444900:CDS
GTCCTAGAATAAACCCTCCA+AGG 0.611715 tig0030854:-27424 None:intergenic
CCTGAGGTAAGAGCTTCTAA+AGG 0.619587 tig0030854:+26284 Msa1444900:CDS
GTCAATGTTTCCTAAGCCTG+AGG 0.626799 tig0030854:+26268 Msa1444900:CDS
CAATGTTGTTGTGGAAGAAG+TGG 0.630302 tig0030854:-25799 None:intergenic
GTATGGAGTAGTTCTGCAGA+AGG 0.632268 tig0030854:-25847 None:intergenic
TGTTCATTGATCCAATGGGA+TGG 0.634149 tig0030854:+27473 Msa1444900:CDS
GATGTGTTCATTGATCCAAT+GGG 0.636999 tig0030854:+27469 Msa1444900:CDS
ATAGAAGTGATGTTGATGGA+TGG 0.641423 tig0030854:+26588 Msa1444900:CDS
GATTCACCTGATGAAGACAC+TGG 0.652328 tig0030854:+27319 Msa1444900:CDS
GATACCCTAACCATTTCACT+CGG 0.660268 tig0030854:-27585 None:intergenic
CACCGACAATGTGATTGTTG+TGG 0.664096 tig0030854:+26379 Msa1444900:CDS
TGAGAGAATCCATTAAACGC+CGG 0.664960 tig0030854:-26316 None:intergenic
TAAAGTTGCAGATCTGAAGG+TGG 0.679551 tig0030854:-26612 None:intergenic
TGTGAAAGAAGGGATATACG+AGG 0.755347 tig0030854:+26487 Msa1444900:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAAAAATGTCTCAATTTT+TGG + tig0030854:26795-26814 Msa1444900:intron 15.0%
!!! ATAAAAAATGTCTCAATTTT+TGG + tig0030854:26795-26814 Msa1444900:intron 15.0%
!! ATAATAATCTATGTGAAAGA+AGG + tig0030854:26476-26495 Msa1444900:CDS 20.0%
!! TAATAATCTATGTGAAAGAA+GGG + tig0030854:26477-26496 Msa1444900:CDS 20.0%
!! CTGACAGAAAAAAAAAATAA+GGG - tig0030854:26997-27016 None:intergenic 20.0%
!!! TTATTTTTTTTTTCTGTCAG+CGG + tig0030854:26997-27016 Msa1444900:intron 20.0%
!! ATAATAATCTATGTGAAAGA+AGG + tig0030854:26476-26495 Msa1444900:CDS 20.0%
!! TAATAATCTATGTGAAAGAA+GGG + tig0030854:26477-26496 Msa1444900:CDS 20.0%
!! CTGACAGAAAAAAAAAATAA+GGG - tig0030854:26997-27016 None:intergenic 20.0%
!!! TTATTTTTTTTTTCTGTCAG+CGG + tig0030854:26997-27016 Msa1444900:intron 20.0%
!!! TGATCTTTTTAGTGAAGATA+AGG - tig0030854:26072-26091 None:intergenic 25.0%
! TCACTAAAAAGATCATTATC+TGG + tig0030854:26077-26096 Msa1444900:CDS 25.0%
! AAAACCAATATTGTTCTACT+TGG + tig0030854:26533-26552 Msa1444900:CDS 25.0%
! ACTCAATTTCTAACGAATAA+AGG - tig0030854:26733-26752 None:intergenic 25.0%
!!! TCTCAATTTTTGGATAGTAA+TGG + tig0030854:26805-26824 Msa1444900:intron 25.0%
!!! CTCAATTTTTGGATAGTAAT+GGG + tig0030854:26806-26825 Msa1444900:intron 25.0%
! GACACAATACTATAATTTCA+AGG - tig0030854:26905-26924 None:intergenic 25.0%
! GCTGACAGAAAAAAAAAATA+AGG - tig0030854:26998-27017 None:intergenic 25.0%
!! TTTTACAAATGTGCAATGTA+TGG + tig0030854:27124-27143 Msa1444900:CDS 25.0%
! ACTGTTTCAGAGTTTATTAT+TGG + tig0030854:27640-27659 Msa1444900:CDS 25.0%
!!! TGATCTTTTTAGTGAAGATA+AGG - tig0030854:26072-26091 None:intergenic 25.0%
! TCACTAAAAAGATCATTATC+TGG + tig0030854:26077-26096 Msa1444900:CDS 25.0%
! AAAACCAATATTGTTCTACT+TGG + tig0030854:26533-26552 Msa1444900:CDS 25.0%
! ACTCAATTTCTAACGAATAA+AGG - tig0030854:26733-26752 None:intergenic 25.0%
!!! TCTCAATTTTTGGATAGTAA+TGG + tig0030854:26805-26824 Msa1444900:intron 25.0%
!!! CTCAATTTTTGGATAGTAAT+GGG + tig0030854:26806-26825 Msa1444900:intron 25.0%
! GACACAATACTATAATTTCA+AGG - tig0030854:26905-26924 None:intergenic 25.0%
! GCTGACAGAAAAAAAAAATA+AGG - tig0030854:26998-27017 None:intergenic 25.0%
!! TTTTACAAATGTGCAATGTA+TGG + tig0030854:27124-27143 Msa1444900:CDS 25.0%
! ACTGTTTCAGAGTTTATTAT+TGG + tig0030854:27640-27659 Msa1444900:CDS 25.0%
ATGAATTGAAGCAAACTTCA+GGG - tig0030854:25872-25891 None:intergenic 30.0%
AGAAGGATGTTAATGATGTT+TGG - tig0030854:25924-25943 None:intergenic 30.0%
TTCAGATATTGATACTTGGA+GGG - tig0030854:25952-25971 None:intergenic 30.0%
TTTCAGATATTGATACTTGG+AGG - tig0030854:25953-25972 None:intergenic 30.0%
TGGTTTCAGATATTGATACT+TGG - tig0030854:25956-25975 None:intergenic 30.0%
! GAATTGATTAGATAGCTTTG+TGG - tig0030854:25976-25995 None:intergenic 30.0%
AACATCATAGAGAACAAAAG+AGG + tig0030854:26011-26030 Msa1444900:CDS 30.0%
TTCTAAACATGTGTTCTTGT+TGG - tig0030854:26165-26184 None:intergenic 30.0%
AAAGTCAATGGCTTCATTAA+TGG - tig0030854:26432-26451 None:intergenic 30.0%
ATCACCAAGTAGAACAATAT+TGG - tig0030854:26540-26559 None:intergenic 30.0%
! AATATTGTTCTACTTGGTGA+TGG + tig0030854:26539-26558 Msa1444900:CDS 30.0%
TGAGTCAATTGACTAAATGT+TGG + tig0030854:26748-26767 Msa1444900:intron 30.0%
!!! TTGGATAGTAATGGGTATTT+TGG + tig0030854:26814-26833 Msa1444900:intron 30.0%
!!! TTTTGGTTTCTTAGAAATCC+TGG + tig0030854:26831-26850 Msa1444900:intron 30.0%
CTCAATTGTGAGAATAACAA+CGG - tig0030854:26865-26884 None:intergenic 30.0%
TTGACATATCGATGATATGA+GGG - tig0030854:26936-26955 None:intergenic 30.0%
TTTGACATATCGATGATATG+AGG - tig0030854:26937-26956 None:intergenic 30.0%
!! TGATATAGCTTTTGAGAACA+AGG + tig0030854:27045-27064 Msa1444900:CDS 30.0%
!! TATAGAGAGTGTGACATTTT+TGG + tig0030854:27187-27206 Msa1444900:CDS 30.0%
!! ATAGAGAGTGTGACATTTTT+GGG + tig0030854:27188-27207 Msa1444900:CDS 30.0%
GGGACAATAGATTACATATT+TGG + tig0030854:27208-27227 Msa1444900:CDS 30.0%
! TAGCTAAAATCGAACAGTTT+TGG - tig0030854:27354-27373 None:intergenic 30.0%
!! TGGTCTTATGATGATGATAA+AGG + tig0030854:27502-27521 Msa1444900:CDS 30.0%
! GGTCTTATGATGATGATAAA+GGG + tig0030854:27503-27522 Msa1444900:CDS 30.0%
! TTATGATGATGATAAAGGGT+TGG + tig0030854:27507-27526 Msa1444900:CDS 30.0%
TATGGTGAGTTTGCAAATTA+TGG + tig0030854:27541-27560 Msa1444900:CDS 30.0%
! ATGGTTAGGGTATCATTTAA+TGG + tig0030854:27594-27613 Msa1444900:CDS 30.0%
!! AGTTTATTATTGGTGATGCT+TGG + tig0030854:27650-27669 Msa1444900:CDS 30.0%
! ACTTCTTTTCCTTATGATGA+TGG + tig0030854:27682-27701 Msa1444900:CDS 30.0%
! CTTCTTTTCCTTATGATGAT+GGG + tig0030854:27683-27702 Msa1444900:CDS 30.0%
ATGAATTGAAGCAAACTTCA+GGG - tig0030854:25872-25891 None:intergenic 30.0%
AGAAGGATGTTAATGATGTT+TGG - tig0030854:25924-25943 None:intergenic 30.0%
TTCAGATATTGATACTTGGA+GGG - tig0030854:25952-25971 None:intergenic 30.0%
TTTCAGATATTGATACTTGG+AGG - tig0030854:25953-25972 None:intergenic 30.0%
TGGTTTCAGATATTGATACT+TGG - tig0030854:25956-25975 None:intergenic 30.0%
! GAATTGATTAGATAGCTTTG+TGG - tig0030854:25976-25995 None:intergenic 30.0%
AACATCATAGAGAACAAAAG+AGG + tig0030854:26011-26030 Msa1444900:CDS 30.0%
TTCTAAACATGTGTTCTTGT+TGG - tig0030854:26165-26184 None:intergenic 30.0%
AAAGTCAATGGCTTCATTAA+TGG - tig0030854:26432-26451 None:intergenic 30.0%
ATCACCAAGTAGAACAATAT+TGG - tig0030854:26540-26559 None:intergenic 30.0%
! AATATTGTTCTACTTGGTGA+TGG + tig0030854:26539-26558 Msa1444900:CDS 30.0%
TGAGTCAATTGACTAAATGT+TGG + tig0030854:26748-26767 Msa1444900:intron 30.0%
!!! TTGGATAGTAATGGGTATTT+TGG + tig0030854:26814-26833 Msa1444900:intron 30.0%
!!! TTTTGGTTTCTTAGAAATCC+TGG + tig0030854:26831-26850 Msa1444900:intron 30.0%
CTCAATTGTGAGAATAACAA+CGG - tig0030854:26865-26884 None:intergenic 30.0%
TTGACATATCGATGATATGA+GGG - tig0030854:26936-26955 None:intergenic 30.0%
TTTGACATATCGATGATATG+AGG - tig0030854:26937-26956 None:intergenic 30.0%
!! TGATATAGCTTTTGAGAACA+AGG + tig0030854:27045-27064 Msa1444900:CDS 30.0%
!! TATAGAGAGTGTGACATTTT+TGG + tig0030854:27187-27206 Msa1444900:CDS 30.0%
!! ATAGAGAGTGTGACATTTTT+GGG + tig0030854:27188-27207 Msa1444900:CDS 30.0%
GGGACAATAGATTACATATT+TGG + tig0030854:27208-27227 Msa1444900:CDS 30.0%
! TAGCTAAAATCGAACAGTTT+TGG - tig0030854:27354-27373 None:intergenic 30.0%
!! TGGTCTTATGATGATGATAA+AGG + tig0030854:27502-27521 Msa1444900:CDS 30.0%
! GGTCTTATGATGATGATAAA+GGG + tig0030854:27503-27522 Msa1444900:CDS 30.0%
! TTATGATGATGATAAAGGGT+TGG + tig0030854:27507-27526 Msa1444900:CDS 30.0%
TATGGTGAGTTTGCAAATTA+TGG + tig0030854:27541-27560 Msa1444900:CDS 30.0%
! ATGGTTAGGGTATCATTTAA+TGG + tig0030854:27594-27613 Msa1444900:CDS 30.0%
!! AGTTTATTATTGGTGATGCT+TGG + tig0030854:27650-27669 Msa1444900:CDS 30.0%
! ACTTCTTTTCCTTATGATGA+TGG + tig0030854:27682-27701 Msa1444900:CDS 30.0%
! CTTCTTTTCCTTATGATGAT+GGG + tig0030854:27683-27702 Msa1444900:CDS 30.0%
TGAAAGCTAAAGTGTGTGAA+TGG - tig0030854:25773-25792 None:intergenic 35.0%
! TTTTGCATGCAATGTTGTTG+TGG - tig0030854:25811-25830 None:intergenic 35.0%
GATGAATTGAAGCAAACTTC+AGG - tig0030854:25873-25892 None:intergenic 35.0%
! ACATGTGTTCTTGTTGGTAA+GGG - tig0030854:26159-26178 None:intergenic 35.0%
AACATGTGTTCTTGTTGGTA+AGG - tig0030854:26160-26179 None:intergenic 35.0%
!! GTTTAATGGATTCTCTCATG+TGG + tig0030854:26321-26340 Msa1444900:CDS 35.0%
! GTTATTTGGAGCAAAGTCAA+TGG - tig0030854:26444-26463 None:intergenic 35.0%
ATCCTAGCATAGCTGTTATT+TGG - tig0030854:26458-26477 None:intergenic 35.0%
TCCATCAACATCACTTCTAT+TGG - tig0030854:26588-26607 None:intergenic 35.0%
! ATAGAAGTGATGTTGATGGA+TGG + tig0030854:26588-26607 Msa1444900:CDS 35.0%
AGTTGAAATTCATGTGTCAC+CGG + tig0030854:26702-26721 Msa1444900:intron 35.0%
AGTGAACATAAAGTGTGTCT+TGG - tig0030854:27153-27172 None:intergenic 35.0%
!! AAATGCAGCAGTAGTTTTAC+AGG + tig0030854:27231-27250 Msa1444900:CDS 35.0%
!! ACAGTGTATTGGTTAGGTAA+TGG - tig0030854:27280-27299 None:intergenic 35.0%
AACAACATGAAGAGTTACCT+TGG + tig0030854:27397-27416 Msa1444900:CDS 35.0%
TGATGTGTTCATTGATCCAA+TGG + tig0030854:27468-27487 Msa1444900:CDS 35.0%
GATGTGTTCATTGATCCAAT+GGG + tig0030854:27469-27488 Msa1444900:CDS 35.0%
ATAACCGAGTGAAATGGTTA+GGG + tig0030854:27581-27600 Msa1444900:CDS 35.0%
!! ATTATTGGTGATGCTTGGAT+TGG + tig0030854:27655-27674 Msa1444900:CDS 35.0%
TGAAAGCTAAAGTGTGTGAA+TGG - tig0030854:25773-25792 None:intergenic 35.0%
! TTTTGCATGCAATGTTGTTG+TGG - tig0030854:25811-25830 None:intergenic 35.0%
GATGAATTGAAGCAAACTTC+AGG - tig0030854:25873-25892 None:intergenic 35.0%
! ACATGTGTTCTTGTTGGTAA+GGG - tig0030854:26159-26178 None:intergenic 35.0%
AACATGTGTTCTTGTTGGTA+AGG - tig0030854:26160-26179 None:intergenic 35.0%
!! GTTTAATGGATTCTCTCATG+TGG + tig0030854:26321-26340 Msa1444900:CDS 35.0%
! GTTATTTGGAGCAAAGTCAA+TGG - tig0030854:26444-26463 None:intergenic 35.0%
ATCCTAGCATAGCTGTTATT+TGG - tig0030854:26458-26477 None:intergenic 35.0%
TCCATCAACATCACTTCTAT+TGG - tig0030854:26588-26607 None:intergenic 35.0%
! ATAGAAGTGATGTTGATGGA+TGG + tig0030854:26588-26607 Msa1444900:CDS 35.0%
AGTTGAAATTCATGTGTCAC+CGG + tig0030854:26702-26721 Msa1444900:intron 35.0%
AGTGAACATAAAGTGTGTCT+TGG - tig0030854:27153-27172 None:intergenic 35.0%
!! AAATGCAGCAGTAGTTTTAC+AGG + tig0030854:27231-27250 Msa1444900:CDS 35.0%
!! ACAGTGTATTGGTTAGGTAA+TGG - tig0030854:27280-27299 None:intergenic 35.0%
AACAACATGAAGAGTTACCT+TGG + tig0030854:27397-27416 Msa1444900:CDS 35.0%
TGATGTGTTCATTGATCCAA+TGG + tig0030854:27468-27487 Msa1444900:CDS 35.0%
GATGTGTTCATTGATCCAAT+GGG + tig0030854:27469-27488 Msa1444900:CDS 35.0%
ATAACCGAGTGAAATGGTTA+GGG + tig0030854:27581-27600 Msa1444900:CDS 35.0%
!! ATTATTGGTGATGCTTGGAT+TGG + tig0030854:27655-27674 Msa1444900:CDS 35.0%
CAATGTTGTTGTGGAAGAAG+TGG - tig0030854:25802-25821 None:intergenic 40.0%
TTGAAGCAAACTTCAGGGTA+TGG - tig0030854:25867-25886 None:intergenic 40.0%
ATACTTGGAGGGAATGAAGA+AGG - tig0030854:25941-25960 None:intergenic 40.0%
GAAAGCTTAGATTCTGCTTC+AGG + tig0030854:26182-26201 Msa1444900:CDS 40.0%
! GTAAGAGCTTCTAAAGGACA+TGG + tig0030854:26290-26309 Msa1444900:CDS 40.0%
! CTTCTAAAGGACATGGAAAC+CGG + tig0030854:26297-26316 Msa1444900:CDS 40.0%
TGAGAGAATCCATTAAACGC+CGG - tig0030854:26319-26338 None:intergenic 40.0%
TGTCAAGCAAAAATCATCGC+AGG + tig0030854:26345-26364 Msa1444900:CDS 40.0%
AGCCACAACAATCACATTGT+CGG - tig0030854:26384-26403 None:intergenic 40.0%
CTCCAAATAACAGCTATGCT+AGG + tig0030854:26453-26472 Msa1444900:CDS 40.0%
TGTGAAAGAAGGGATATACG+AGG + tig0030854:26487-26506 Msa1444900:CDS 40.0%
GCCAATAGAAGTGATGTTGA+TGG + tig0030854:26584-26603 Msa1444900:CDS 40.0%
TAAAGTTGCAGATCTGAAGG+TGG - tig0030854:26615-26634 None:intergenic 40.0%
ACCTTCAGATCTGCAACTTT+AGG + tig0030854:26614-26633 Msa1444900:CDS 40.0%
ACCTAAAGTTGCAGATCTGA+AGG - tig0030854:26618-26637 None:intergenic 40.0%
! CTAACGAATAAAGGACTAGC+CGG - tig0030854:26724-26743 None:intergenic 40.0%
!!! TTTTTTCTGTCAGCGGTTTC+TGG + tig0030854:27004-27023 Msa1444900:intron 40.0%
!! ATAGCTTTTGAGAACAAGGC+AGG + tig0030854:27049-27068 Msa1444900:CDS 40.0%
!! GTGATGACAGTGTATTGGTT+AGG - tig0030854:27286-27305 None:intergenic 40.0%
ACATGAAGAGTTACCTTGGA+AGG + tig0030854:27401-27420 Msa1444900:CDS 40.0%
TGTTCATTGATCCAATGGGA+TGG + tig0030854:27473-27492 Msa1444900:CDS 40.0%
GGGTTGGACACTTTGTATTA+TGG + tig0030854:27523-27542 Msa1444900:CDS 40.0%
GAGTTTGCAAATTATGGACC+TGG + tig0030854:27547-27566 Msa1444900:CDS 40.0%
! CAAATTATGGACCTGGTTCT+GGG + tig0030854:27554-27573 Msa1444900:CDS 40.0%
GATAACCGAGTGAAATGGTT+AGG + tig0030854:27580-27599 Msa1444900:CDS 40.0%
GATACCCTAACCATTTCACT+CGG - tig0030854:27588-27607 None:intergenic 40.0%
CAATGTTGTTGTGGAAGAAG+TGG - tig0030854:25802-25821 None:intergenic 40.0%
TTGAAGCAAACTTCAGGGTA+TGG - tig0030854:25867-25886 None:intergenic 40.0%
ATACTTGGAGGGAATGAAGA+AGG - tig0030854:25941-25960 None:intergenic 40.0%
GAAAGCTTAGATTCTGCTTC+AGG + tig0030854:26182-26201 Msa1444900:CDS 40.0%
! GTAAGAGCTTCTAAAGGACA+TGG + tig0030854:26290-26309 Msa1444900:CDS 40.0%
! CTTCTAAAGGACATGGAAAC+CGG + tig0030854:26297-26316 Msa1444900:CDS 40.0%
TGAGAGAATCCATTAAACGC+CGG - tig0030854:26319-26338 None:intergenic 40.0%
TGTCAAGCAAAAATCATCGC+AGG + tig0030854:26345-26364 Msa1444900:CDS 40.0%
AGCCACAACAATCACATTGT+CGG - tig0030854:26384-26403 None:intergenic 40.0%
CTCCAAATAACAGCTATGCT+AGG + tig0030854:26453-26472 Msa1444900:CDS 40.0%
TGTGAAAGAAGGGATATACG+AGG + tig0030854:26487-26506 Msa1444900:CDS 40.0%
GCCAATAGAAGTGATGTTGA+TGG + tig0030854:26584-26603 Msa1444900:CDS 40.0%
TAAAGTTGCAGATCTGAAGG+TGG - tig0030854:26615-26634 None:intergenic 40.0%
ACCTTCAGATCTGCAACTTT+AGG + tig0030854:26614-26633 Msa1444900:CDS 40.0%
ACCTAAAGTTGCAGATCTGA+AGG - tig0030854:26618-26637 None:intergenic 40.0%
! CTAACGAATAAAGGACTAGC+CGG - tig0030854:26724-26743 None:intergenic 40.0%
!!! TTTTTTCTGTCAGCGGTTTC+TGG + tig0030854:27004-27023 Msa1444900:intron 40.0%
!! ATAGCTTTTGAGAACAAGGC+AGG + tig0030854:27049-27068 Msa1444900:CDS 40.0%
!! GTGATGACAGTGTATTGGTT+AGG - tig0030854:27286-27305 None:intergenic 40.0%
ACATGAAGAGTTACCTTGGA+AGG + tig0030854:27401-27420 Msa1444900:CDS 40.0%
TGTTCATTGATCCAATGGGA+TGG + tig0030854:27473-27492 Msa1444900:CDS 40.0%
GGGTTGGACACTTTGTATTA+TGG + tig0030854:27523-27542 Msa1444900:CDS 40.0%
GAGTTTGCAAATTATGGACC+TGG + tig0030854:27547-27566 Msa1444900:CDS 40.0%
! CAAATTATGGACCTGGTTCT+GGG + tig0030854:27554-27573 Msa1444900:CDS 40.0%
GATAACCGAGTGAAATGGTT+AGG + tig0030854:27580-27599 Msa1444900:CDS 40.0%
GATACCCTAACCATTTCACT+CGG - tig0030854:27588-27607 None:intergenic 40.0%
! GTATGGAGTAGTTCTGCAGA+AGG - tig0030854:25850-25869 None:intergenic 45.0%
GTCAATGTTTCCTAAGCCTG+AGG + tig0030854:26268-26287 Msa1444900:CDS 45.0%
! CCTTTAGAAGCTCTTACCTC+AGG - tig0030854:26287-26306 None:intergenic 45.0%
CCTGAGGTAAGAGCTTCTAA+AGG + tig0030854:26284-26303 Msa1444900:CDS 45.0%
ACATGGAAACCGGCGTTTAA+TGG + tig0030854:26307-26326 Msa1444900:CDS 45.0%
CACCGACAATGTGATTGTTG+TGG + tig0030854:26379-26398 Msa1444900:CDS 45.0%
! ATAACAACGGACTTCTGACC+AGG - tig0030854:26852-26871 None:intergenic 45.0%
!!! GGTTTCTGGTGAAGGTTTTC+TGG + tig0030854:27018-27037 Msa1444900:CDS 45.0%
GTGCAGTGATGACAGTGTAT+TGG - tig0030854:27291-27310 None:intergenic 45.0%
GATTCACCTGATGAAGACAC+TGG + tig0030854:27319-27338 Msa1444900:CDS 45.0%
GAAATGCCAGTGTCTTCATC+AGG - tig0030854:27328-27347 None:intergenic 45.0%
GTCCTAGAATAAACCCTCCA+AGG - tig0030854:27427-27446 None:intergenic 45.0%
!! ATCCAATGGGATGGACTAAG+TGG + tig0030854:27482-27501 Msa1444900:CDS 45.0%
GCAAATTATGGACCTGGTTC+TGG + tig0030854:27553-27572 Msa1444900:CDS 45.0%
! GTATGGAGTAGTTCTGCAGA+AGG - tig0030854:25850-25869 None:intergenic 45.0%
GTCAATGTTTCCTAAGCCTG+AGG + tig0030854:26268-26287 Msa1444900:CDS 45.0%
! CCTTTAGAAGCTCTTACCTC+AGG - tig0030854:26287-26306 None:intergenic 45.0%
CCTGAGGTAAGAGCTTCTAA+AGG + tig0030854:26284-26303 Msa1444900:CDS 45.0%
ACATGGAAACCGGCGTTTAA+TGG + tig0030854:26307-26326 Msa1444900:CDS 45.0%
CACCGACAATGTGATTGTTG+TGG + tig0030854:26379-26398 Msa1444900:CDS 45.0%
! ATAACAACGGACTTCTGACC+AGG - tig0030854:26852-26871 None:intergenic 45.0%
!!! GGTTTCTGGTGAAGGTTTTC+TGG + tig0030854:27018-27037 Msa1444900:CDS 45.0%
GTGCAGTGATGACAGTGTAT+TGG - tig0030854:27291-27310 None:intergenic 45.0%
GATTCACCTGATGAAGACAC+TGG + tig0030854:27319-27338 Msa1444900:CDS 45.0%
GAAATGCCAGTGTCTTCATC+AGG - tig0030854:27328-27347 None:intergenic 45.0%
GTCCTAGAATAAACCCTCCA+AGG - tig0030854:27427-27446 None:intergenic 45.0%
!! ATCCAATGGGATGGACTAAG+TGG + tig0030854:27482-27501 Msa1444900:CDS 45.0%
GCAAATTATGGACCTGGTTC+TGG + tig0030854:27553-27572 Msa1444900:CDS 45.0%
GAAGCTCTTACCTCAGGCTT+AGG - tig0030854:26281-26300 None:intergenic 50.0%
GTGATTGTTGTGGCTGCAGA+TGG + tig0030854:26389-26408 Msa1444900:CDS 50.0%
GCAACTGCTTGATGCTTCTC+TGG - tig0030854:27076-27095 None:intergenic 50.0%
AGAGTTACCTTGGAAGGCCT+TGG + tig0030854:27407-27426 Msa1444900:CDS 50.0%
TTACCTTGGAAGGCCTTGGA+GGG + tig0030854:27411-27430 Msa1444900:CDS 50.0%
GGCCTTGGAGGGTTTATTCT+AGG + tig0030854:27422-27441 Msa1444900:CDS 50.0%
GACCACTTAGTCCATCCCAT+TGG - tig0030854:27487-27506 None:intergenic 50.0%
!! TTATGGACCTGGTTCTGGGA+CGG + tig0030854:27558-27577 Msa1444900:CDS 50.0%
GGACGGATAACCGAGTGAAA+TGG + tig0030854:27575-27594 Msa1444900:CDS 50.0%
GAAGCTCTTACCTCAGGCTT+AGG - tig0030854:26281-26300 None:intergenic 50.0%
GTGATTGTTGTGGCTGCAGA+TGG + tig0030854:26389-26408 Msa1444900:CDS 50.0%
GCAACTGCTTGATGCTTCTC+TGG - tig0030854:27076-27095 None:intergenic 50.0%
AGAGTTACCTTGGAAGGCCT+TGG + tig0030854:27407-27426 Msa1444900:CDS 50.0%
TTACCTTGGAAGGCCTTGGA+GGG + tig0030854:27411-27430 Msa1444900:CDS 50.0%
GGCCTTGGAGGGTTTATTCT+AGG + tig0030854:27422-27441 Msa1444900:CDS 50.0%
GACCACTTAGTCCATCCCAT+TGG - tig0030854:27487-27506 None:intergenic 50.0%
!! TTATGGACCTGGTTCTGGGA+CGG + tig0030854:27558-27577 Msa1444900:CDS 50.0%
GGACGGATAACCGAGTGAAA+TGG + tig0030854:27575-27594 Msa1444900:CDS 50.0%
GTTGTGGCTGCAGATGGAAC+TGG + tig0030854:26395-26414 Msa1444900:CDS 55.0%
!! CTGTCAGCGGTTTCTGGTGA+AGG + tig0030854:27010-27029 Msa1444900:intron 55.0%
GTTACCTTGGAAGGCCTTGG+AGG + tig0030854:27410-27429 Msa1444900:CDS 55.0%
AAACCCTCCAAGGCCTTCCA+AGG - tig0030854:27417-27436 None:intergenic 55.0%
GTTGTGGCTGCAGATGGAAC+TGG + tig0030854:26395-26414 Msa1444900:CDS 55.0%
!! CTGTCAGCGGTTTCTGGTGA+AGG + tig0030854:27010-27029 Msa1444900:intron 55.0%
GTTACCTTGGAAGGCCTTGG+AGG + tig0030854:27410-27429 Msa1444900:CDS 55.0%
AAACCCTCCAAGGCCTTCCA+AGG - tig0030854:27417-27436 None:intergenic 55.0%
CGGTTATCCGTCCCAGAACC+AGG - tig0030854:27568-27587 None:intergenic 60.0%
CGGTTATCCGTCCCAGAACC+AGG - tig0030854:27568-27587 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0030854 gene 25723 27711 25723 ID=Msa1444900;Name=Msa1444900
tig0030854 mRNA 25723 27711 25723 ID=Msa1444900-mRNA-1;Parent=Msa1444900;Name=Msa1444900-mRNA-1;_AED=0.42;_eAED=0.42;_QI=0|0|0|1|1|1|2|0|535
tig0030854 exon 25723 26635 25723 ID=Msa1444900-mRNA-1:exon:14708;Parent=Msa1444900-mRNA-1
tig0030854 exon 27017 27711 27017 ID=Msa1444900-mRNA-1:exon:14709;Parent=Msa1444900-mRNA-1
tig0030854 CDS 25723 26635 25723 ID=Msa1444900-mRNA-1:cds;Parent=Msa1444900-mRNA-1
tig0030854 CDS 27017 27711 27017 ID=Msa1444900-mRNA-1:cds;Parent=Msa1444900-mRNA-1
Gene Sequence

>Msa1444900

ATGGCTAATTTATCTTCTAAACTCTTTCTTCTTCTCTTAACAATCTTCCATTCACACACTTTAGCTTTCAACAACACCACTTCTTCCACAACAACATTGCATGCAAAAATCTCTTCAATAAAATCCTTCTGCAGAACTACTCCATACCCTGAAGTTTGCTTCAATTCATCAAAGCTATCAATCTCAATAAACATAAATCCAAACATCATTAACATCCTTCTTCATTCCCTCCAAGTATCAATATCTGAAACCACAAAGCTATCTAATCAATTCAACAATGCTCACTCAAACATCATAGAGAACAAAAGAGGAGCTATACAAGATTGCAAAGAACTTCAACAGTCTACCTTATCTTCACTAAAAAGATCATTATCTGGAATTCATTCATCAAAATATAGAAAGTTAGTTGATGCAAGAACTTATCTCAGTGCAGCCCTTACCAACAAGAACACATGTTTAGAAAGCTTAGATTCTGCTTCAGGTACAATGAAGCAAGTTTTAGTTGATTCAGTGATCAACACTTACAAGCATGTTAGTAATTCTCTGTCAATGTTTCCTAAGCCTGAGGTAAGAGCTTCTAAAGGACATGGAAACCGGCGTTTAATGGATTCTCTCATGTGGTTGTCAAGCAAAAATCATCGCAGGTTCTTACAAAGCACCGACAATGTGATTGTTGTGGCTGCAGATGGAACTGGAAACTTTAGCACCATTAATGAAGCCATTGACTTTGCTCCAAATAACAGCTATGCTAGGATAATAATCTATGTGAAAGAAGGGATATACGAGGAAAATGTTGAAATCTCAAGCAATAAAACCAATATTGTTCTACTTGGTGATGGAAATGATCTCACTGTCATTACTGCCAATAGAAGTGATGTTGATGGATGGACCACCTTCAGATCTGCAACTTTAGCGGTTTCTGGTGAAGGTTTTCTGGCACGTGATATAGCTTTTGAGAACAAGGCAGGACCAGAGAAGCATCAAGCAGTTGCATTAAGAGTGAATGCAGACATAACAGCTTTTTACAAATGTGCAATGTATGGTTACCAAGACACACTTTATGTTCACTCATTTAGACAATTCTATAGAGAGTGTGACATTTTTGGGACAATAGATTACATATTTGGAAATGCAGCAGTAGTTTTACAGGCATGTAACATTATATCAAGAATGCCATTACCTAACCAATACACTGTCATCACTGCACAGTCAAGAGATTCACCTGATGAAGACACTGGCATTTCAATCCAAAACTGTTCGATTTTAGCTACTACTGATTTGTATAACAACTTTAACAACATGAAGAGTTACCTTGGAAGGCCTTGGAGGGTTTATTCTAGGACTGTTTTCATTGAATCTTACATTGATGTGTTCATTGATCCAATGGGATGGACTAAGTGGTCTTATGATGATGATAAAGGGTTGGACACTTTGTATTATGGTGAGTTTGCAAATTATGGACCTGGTTCTGGGACGGATAACCGAGTGAAATGGTTAGGGTATCATTTAATGGATTTTGATAGTGCAAATAATTTCACTGTTTCAGAGTTTATTATTGGTGATGCTTGGATTGGTTCTACTTCTTTTCCTTATGATGATGGGATTTGA

Protein sequence

>Msa1444900

MANLSSKLFLLLLTIFHSHTLAFNNTTSSTTTLHAKISSIKSFCRTTPYPEVCFNSSKLSISININPNIINILLHSLQVSISETTKLSNQFNNAHSNIIENKRGAIQDCKELQQSTLSSLKRSLSGIHSSKYRKLVDARTYLSAALTNKNTCLESLDSASGTMKQVLVDSVINTYKHVSNSLSMFPKPEVRASKGHGNRRLMDSLMWLSSKNHRRFLQSTDNVIVVAADGTGNFSTINEAIDFAPNNSYARIIIYVKEGIYEENVEISSNKTNIVLLGDGNDLTVITANRSDVDGWTTFRSATLAVSGEGFLARDIAFENKAGPEKHQAVALRVNADITAFYKCAMYGYQDTLYVHSFRQFYRECDIFGTIDYIFGNAAVVLQACNIISRMPLPNQYTVITAQSRDSPDEDTGISIQNCSILATTDLYNNFNNMKSYLGRPWRVYSRTVFIESYIDVFIDPMGWTKWSYDDDKGLDTLYYGEFANYGPGSGTDNRVKWLGYHLMDFDSANNFTVSEFIIGDAWIGSTSFPYDDGI*