AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1428660


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1428660 MtrunA17_Chr4g0069881 96.075 535 21 0 1 535 1 535 0.0 1019
Msa1428660 MtrunA17_Chr2g0302001 80.709 254 47 1 282 535 186 437 5.00e-155 449
Msa1428660 MtrunA17_Chr2g0302001 69.832 179 52 2 1 177 1 179 9.93e-64 214
Msa1428660 MtrunA17_Chr7g0269541 43.376 551 273 15 6 531 16 552 2.91e-143 424
Msa1428660 MtrunA17_Chr8g0354911 44.341 539 249 13 44 535 78 612 3.14e-143 426
Msa1428660 MtrunA17_Chr1g0192331 42.342 555 271 12 1 534 1 527 5.32e-135 402
Msa1428660 MtrunA17_Chr2g0302021 45.455 440 225 8 105 535 92 525 2.59e-134 400
Msa1428660 MtrunA17_Chr1g0147051 39.759 581 278 14 4 535 50 607 1.02e-133 401
Msa1428660 MtrunA17_Chr1g0195331 41.948 534 264 9 41 535 29 555 2.55e-133 399
Msa1428660 MtrunA17_Chr1g0195301 41.760 534 265 9 41 535 29 555 4.32e-133 398
Msa1428660 MtrunA17_Chr1g0195321 41.760 534 265 9 41 535 29 555 4.32e-133 398
Msa1428660 MtrunA17_Chr3g0080381 41.959 541 261 10 44 535 92 628 1.21e-132 399
Msa1428660 MtrunA17_Chr8g0345281 43.074 527 264 12 40 535 68 589 1.51e-131 395
Msa1428660 MtrunA17_Chr7g0272141 38.378 555 309 8 1 535 1 542 2.43e-131 393
Msa1428660 MtrunA17_Chr7g0269511 40.106 566 289 12 8 535 11 564 2.60e-131 394
Msa1428660 MtrunA17_Chr3g0126771 39.688 577 279 14 4 535 45 597 3.93e-131 394
Msa1428660 MtrunA17_Chr7g0269531 40.643 529 269 9 41 531 40 561 1.81e-130 392
Msa1428660 MtrunA17_Chr1g0175661 40.917 567 279 13 7 535 10 558 1.05e-129 389
Msa1428660 MtrunA17_Chr7g0233801 42.348 477 253 7 75 535 83 553 1.74e-129 389
Msa1428660 MtrunA17_Chr1g0195351 41.698 530 261 10 41 531 29 549 2.48e-129 388
Msa1428660 MtrunA17_Chr4g0069841 41.785 493 259 11 54 535 41 516 2.51e-128 384
Msa1428660 MtrunA17_Chr8g0391291 40.647 556 277 14 14 535 3 539 2.99e-128 385
Msa1428660 MtrunA17_Chr8g0391311 42.035 521 258 12 44 535 36 541 3.02e-128 385
Msa1428660 MtrunA17_Chr4g0011791 42.802 521 255 16 29 535 18 509 2.31e-127 382
Msa1428660 MtrunA17_Chr7g0269521 40.713 533 271 10 41 535 37 562 3.34e-127 383
Msa1428660 MtrunA17_Chr8g0354901 41.782 505 268 9 38 524 74 570 6.98e-127 383
Msa1428660 MtrunA17_Chr7g0233831 39.959 488 266 6 67 535 76 555 2.00e-126 380
Msa1428660 MtrunA17_Chr7g0233771 41.053 475 263 7 75 535 83 554 4.39e-125 377
Msa1428660 MtrunA17_Chr3g0080391 40.000 515 281 11 39 535 70 574 2.74e-123 373
Msa1428660 MtrunA17_Chr4g0069861 41.414 495 260 10 54 535 40 517 7.37e-122 368
Msa1428660 MtrunA17_Chr3g0090091 38.911 514 283 10 38 535 30 528 6.00e-121 366
Msa1428660 MtrunA17_Chr4g0011771 39.522 544 277 14 4 531 2 509 1.08e-120 365
Msa1428660 MtrunA17_Chr3g0079361 39.250 507 290 10 38 535 30 527 1.43e-120 365
Msa1428660 MtrunA17_Chr3g0079351 37.684 544 313 12 1 535 1 527 2.50e-120 364
Msa1428660 MtrunA17_Chr3g0079341 39.250 507 290 10 38 535 30 527 5.86e-120 363
Msa1428660 MtrunA17_Chr4g0011751 40.588 510 258 13 37 535 14 489 3.48e-119 360
Msa1428660 MtrunA17_Chr4g0018371 39.530 511 287 10 40 535 36 539 7.68e-118 358
Msa1428660 MtrunA17_Chr7g0272151 35.182 577 313 11 6 534 19 582 5.92e-115 352
Msa1428660 MtrunA17_Chr1g0192321 36.813 546 293 13 31 534 47 582 4.66e-111 342
Msa1428660 MtrunA17_Chr1g0192311 35.534 515 309 9 37 531 55 566 4.03e-109 337
Msa1428660 MtrunA17_Chr1g0192281 35.534 515 309 9 37 531 55 566 4.03e-109 337
Msa1428660 MtrunA17_Chr4g0000121 36.449 535 305 12 21 531 30 553 1.10e-108 335
Msa1428660 MtrunA17_Chr1g0192301 36.449 535 305 12 21 531 48 571 1.10e-108 336
Msa1428660 MtrunA17_Chr1g0194091 38.046 481 257 8 87 531 90 565 1.63e-107 332
Msa1428660 MtrunA17_Chr1g0195311 55.805 267 116 1 269 535 50 314 1.20e-106 322
Msa1428660 MtrunA17_Chr8g0345211 39.114 519 284 14 38 535 75 582 1.16e-105 328
Msa1428660 MtrunA17_Chr7g0270691 36.187 514 305 11 40 534 39 548 3.59e-100 313
Msa1428660 MtrunA17_Chr4g0069891 36.590 522 296 12 40 535 81 593 1.74e-99 312
Msa1428660 MtrunA17_Chr1g0194081 34.747 495 282 11 69 534 80 562 2.42e-94 298
Msa1428660 MtrunA17_Chr7g0270661 37.558 434 229 8 105 502 108 535 8.45e-91 289
Msa1428660 MtrunA17_Chr7g0270671 37.558 434 229 8 105 502 108 535 8.45e-91 289
Msa1428660 MtrunA17_Chr7g0270651 35.938 448 244 8 105 515 108 549 9.60e-91 289
Msa1428660 MtrunA17_Chr8g0384121 34.397 564 309 15 8 534 24 563 1.20e-90 289
Msa1428660 MtrunA17_Chr3g0129921 33.993 556 319 15 8 534 27 563 4.24e-87 279
Msa1428660 MtrunA17_Chr4g0067611 33.652 523 309 13 40 534 59 571 3.86e-86 277
Msa1428660 MtrunA17_Chr7g0234711 51.724 232 110 2 305 535 39 269 5.71e-86 266
Msa1428660 MtrunA17_Chr4g0067601 33.141 519 317 11 40 534 59 571 1.15e-85 276
Msa1428660 MtrunA17_Chr2g0295531 31.712 514 315 11 40 531 43 542 3.03e-83 270
Msa1428660 MtrunA17_Chr2g0301931 45.105 286 151 3 250 535 13 292 4.15e-82 258
Msa1428660 MtrunA17_Chr7g0270631 34.956 452 243 9 105 515 96 537 2.94e-81 275
Msa1428660 MtrunA17_Chr7g0270631 34.590 451 254 9 105 515 644 1093 4.98e-71 246
Msa1428660 MtrunA17_Chr5g0437831 42.433 337 179 6 207 534 52 382 8.20e-81 257
Msa1428660 MtrunA17_Chr2g0295551 32.571 525 307 14 40 534 56 563 2.52e-80 261
Msa1428660 MtrunA17_Chr8g0380581 40.061 327 192 4 207 531 48 372 6.05e-79 252
Msa1428660 MtrunA17_Chr7g0268241 41.121 321 174 5 217 535 43 350 1.72e-77 248
Msa1428660 MtrunA17_Chr2g0295541 30.811 555 308 15 40 534 56 594 1.58e-73 244
Msa1428660 MtrunA17_Chr2g0334111 39.688 320 173 5 219 535 21 323 1.62e-73 236
Msa1428660 MtrunA17_Chr7g0271381 29.672 519 328 12 35 534 55 555 1.48e-63 217
Msa1428660 MtrunA17_Chr6g0453551 37.255 306 167 5 223 518 5 295 1.06e-57 194
Msa1428660 MtrunA17_Chr7g0217941 35.948 306 171 6 223 518 5 295 6.05e-54 185
Msa1428660 MtrunA17_Chr1g0194311 34.104 346 194 7 189 524 47 368 1.23e-52 183
Msa1428660 MtrunA17_Chr6g0487101 37.171 304 164 9 232 524 93 380 5.25e-52 181
Msa1428660 MtrunA17_Chr8g0389771 36.039 308 168 9 232 526 88 379 3.33e-51 179
Msa1428660 MtrunA17_Chr6g0466961 36.218 312 171 8 224 529 40 329 3.89e-51 177
Msa1428660 MtrunA17_Chr6g0466951 33.333 312 180 9 224 529 69 358 1.22e-49 174
Msa1428660 MtrunA17_Chr7g0258341 33.651 315 186 6 220 524 86 387 7.20e-47 168
Msa1428660 MtrunA17_Chr5g0446301 35.714 308 168 8 230 524 67 357 8.33e-47 167
Msa1428660 MtrunA17_Chr5g0399221 31.420 331 198 8 209 527 49 362 4.70e-46 165
Msa1428660 MtrunA17_Chr1g0161731 31.034 319 196 6 213 524 38 339 1.29e-44 160
Msa1428660 MtrunA17_Chr7g0265201 34.641 306 172 7 226 524 101 385 1.28e-42 156
Msa1428660 MtrunA17_Chr4g0070051 29.412 323 199 7 211 524 41 343 1.59e-42 155
Msa1428660 MtrunA17_Chr8g0351871 31.833 311 183 8 223 524 32 322 1.17e-38 144
Msa1428660 MtrunA17_Chr2g0294321 32.063 315 186 8 219 524 51 346 5.01e-38 143
Msa1428660 MtrunA17_Chr5g0440871 32.268 313 185 7 212 524 33 318 2.42e-35 135
Msa1428660 MtrunA17_Chr8g0391261 45.985 137 71 2 400 535 32 166 3.64e-35 129
Msa1428660 MtrunA17_Chr4g0037751 30.744 309 192 9 222 524 69 361 1.74e-33 130
Msa1428660 MtrunA17_Chr2g0299431 36.036 222 129 6 214 427 40 256 8.64e-33 127
Msa1428660 MtrunA17_Chr5g0420831 30.824 279 173 7 223 495 70 334 6.63e-32 126
Msa1428660 MtrunA17_Chr2g0295851 29.114 316 185 10 219 524 50 336 1.58e-30 122
Msa1428660 MtrunA17_Chr8g0391281 32.759 290 154 10 44 305 34 310 1.61e-29 118
Msa1428660 MtrunA17_Chr6g0459781 34.682 173 101 4 223 385 12 182 1.67e-27 110
Msa1428660 MtrunA17_Chr4g0025841 30.400 250 157 4 224 473 37 269 3.18e-26 107
Msa1428660 MtrunA17_Chr5g0437821 39.259 135 81 1 337 470 4 138 2.42e-25 101
Msa1428660 MtrunA17_Chr7g0265161 35.838 173 78 4 298 465 14 158 6.15e-23 97.8
Msa1428660 MtrunA17_Chr5g0440901 34.043 141 84 1 329 469 13 144 1.97e-21 90.9
Msa1428660 MtrunA17_Chr7g0234731 29.197 274 178 8 38 303 49 314 2.29e-21 95.1
Msa1428660 MtrunA17_Chr2g0314691 33.333 177 101 5 321 496 15 175 1.80e-20 89.7
Msa1428660 MtrunA17_Chr5g0440891 34.524 168 101 3 222 388 46 205 3.04e-18 83.6
Msa1428660 MtrunA17_Chr6g0460141 36.842 133 76 3 254 378 7 139 9.78e-17 77.4
Msa1428660 MtrunA17_Chr6g0459791 36.000 125 68 3 400 524 4 116 6.80e-16 73.9
Msa1428660 MtrunA17_Chr4g0073911 30.058 173 106 6 254 417 38 204 7.11e-13 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1428660 AT2G26440.1 61.996 521 179 6 32 535 29 547 0.0 650
Msa1428660 AT4G33220.1 45.714 490 233 9 74 535 39 523 4.82e-143 422
Msa1428660 AT3G43270.1 48.230 452 207 9 105 535 80 525 5.00e-140 415
Msa1428660 AT4G02330.1 41.368 585 275 14 4 535 2 571 5.56e-138 411
Msa1428660 AT1G02810.1 40.168 595 275 13 4 535 1 577 1.20e-136 408
Msa1428660 AT4G33220.2 49.630 405 179 7 153 535 1 402 9.58e-134 394
Msa1428660 AT4G02320.1 43.326 487 245 8 68 531 36 514 8.86e-133 396
Msa1428660 AT3G05620.1 44.321 449 221 5 105 535 104 541 1.56e-132 396
Msa1428660 AT1G53830.1 41.392 546 275 12 24 531 45 583 5.94e-128 386
Msa1428660 AT2G47550.1 44.731 465 220 7 104 535 98 558 3.28e-126 380
Msa1428660 AT4G02300.1 42.531 482 258 6 69 534 53 531 5.16e-126 379
Msa1428660 AT3G10720.2 38.447 541 276 12 44 535 83 615 1.00e-125 381
Msa1428660 AT3G49220.1 41.923 520 270 10 39 535 86 596 1.12e-124 378
Msa1428660 AT3G14310.1 39.179 536 284 9 40 535 59 592 3.08e-124 377
Msa1428660 AT3G49220.3 41.923 520 270 10 39 535 131 641 3.45e-124 378
Msa1428660 AT5G53370.1 40.504 516 284 10 39 535 74 585 3.71e-124 376
Msa1428660 AT5G53370.2 40.504 516 284 10 39 535 110 621 1.54e-123 376
Msa1428660 AT5G51500.1 40.154 518 285 8 30 531 28 536 2.15e-123 373
Msa1428660 AT3G10710.1 40.316 506 280 10 39 535 69 561 4.90e-123 372
Msa1428660 AT1G11580.1 42.350 451 240 8 95 533 113 555 3.96e-122 370
Msa1428660 AT1G11580.2 42.350 451 240 8 95 533 134 576 5.35e-122 370
Msa1428660 AT5G51490.1 40.711 506 281 9 43 535 37 536 1.16e-121 368
Msa1428660 AT5G04970.1 38.476 538 280 11 44 535 88 620 7.27e-121 369
Msa1428660 AT2G43050.1 43.172 454 223 11 94 535 86 516 9.16e-118 357
Msa1428660 AT5G04960.1 38.386 508 286 11 39 532 67 561 4.81e-117 357
Msa1428660 AT1G23200.1 38.534 532 272 13 44 535 38 554 1.28e-116 356
Msa1428660 AT5G27870.1 37.187 519 296 9 37 535 54 562 8.26e-115 357
Msa1428660 AT3G60730.1 44.573 433 196 9 137 535 97 519 1.43e-114 349
Msa1428660 AT3G59010.1 44.595 444 215 12 106 535 102 528 5.61e-114 348
Msa1428660 AT4G00190.1 39.357 498 259 14 43 531 7 470 3.34e-113 344
Msa1428660 AT3G05610.1 35.932 526 303 10 33 535 51 565 3.04e-112 348
Msa1428660 AT2G45220.1 40.039 517 254 16 40 535 30 511 4.69e-112 343
Msa1428660 AT3G47400.1 37.170 530 274 12 43 535 87 594 3.40e-111 343
Msa1428660 AT1G53840.1 38.060 536 287 13 24 527 57 579 1.30e-110 341
Msa1428660 AT5G49180.1 35.036 548 328 9 10 531 21 566 9.16e-109 336
Msa1428660 AT2G26450.1 36.986 511 299 8 40 535 109 611 3.85e-108 336
Msa1428660 AT4G33230.1 37.572 519 294 12 40 535 95 606 8.09e-108 335
Msa1428660 AT5G20860.2 39.545 440 240 7 109 535 112 538 9.72e-106 327
Msa1428660 AT4G03930.1 39.770 435 246 7 110 535 97 524 2.26e-105 326
Msa1428660 AT3G10720.1 54.023 261 118 1 275 535 1 259 6.20e-105 315
Msa1428660 AT1G11590.1 39.168 457 251 9 95 535 79 524 1.57e-104 323
Msa1428660 AT3G27980.1 42.289 402 215 7 140 535 107 497 4.36e-104 322
Msa1428660 AT3G14300.1 38.150 519 272 16 38 524 457 958 4.72e-103 332
Msa1428660 AT3G06830.1 34.043 517 315 9 39 531 50 564 8.46e-96 302
Msa1428660 AT1G11370.1 52.066 242 116 0 224 465 46 287 3.30e-88 273
Msa1428660 AT5G20860.1 36.277 419 213 6 109 514 112 489 7.58e-86 275
Msa1428660 AT4G15980.1 42.903 310 174 2 224 532 392 699 2.10e-80 266
Msa1428660 AT4G15980.2 42.903 310 174 2 224 532 402 709 4.70e-80 265
Msa1428660 AT5G09760.1 33.461 523 292 15 38 523 43 546 7.11e-80 260
Msa1428660 AT5G09760.2 33.461 523 292 15 38 523 69 572 2.33e-79 259
Msa1428660 AT5G64640.1 32.775 537 292 18 37 528 90 602 1.48e-76 253
Msa1428660 AT3G62170.1 41.083 314 179 4 225 535 278 588 6.80e-70 235
Msa1428660 AT2G47030.1 28.353 589 347 15 10 535 12 588 7.55e-69 232
Msa1428660 AT2G47040.1 41.083 314 179 4 225 535 285 595 8.11e-67 227
Msa1428660 AT3G29090.1 35.806 310 174 6 219 518 2 296 1.22e-55 189
Msa1428660 AT2G36710.1 37.231 325 181 7 207 524 77 385 6.76e-54 187
Msa1428660 AT5G19730.1 37.500 304 163 8 232 524 94 381 3.41e-53 185
Msa1428660 AT1G05310.1 35.220 318 177 6 220 524 87 388 1.29e-51 181
Msa1428660 AT2G36700.1 35.505 307 179 5 223 524 41 333 2.29e-49 173
Msa1428660 AT5G47500.1 31.611 329 198 8 208 524 44 357 9.08e-49 172
Msa1428660 AT3G17060.1 34.185 313 182 7 219 524 41 336 2.23e-47 168
Msa1428660 AT2G21610.1 36.066 305 170 9 223 524 50 332 2.45e-46 166
Msa1428660 AT2G21610.2 36.066 305 170 9 223 524 55 337 3.16e-46 166
Msa1428660 AT5G55590.1 34.713 314 177 8 223 524 81 378 5.61e-45 163
Msa1428660 AT5G55590.2 36.293 259 141 6 223 469 81 327 3.54e-42 154
Msa1428660 AT5G07430.1 32.372 312 189 7 218 524 61 355 4.03e-42 155
Msa1428660 AT1G44980.1 46.061 165 89 0 224 388 78 242 2.64e-41 149
Msa1428660 AT5G18990.1 30.892 314 191 7 197 499 2 300 4.69e-39 145
Msa1428660 AT3G24130.1 30.189 318 194 7 224 530 34 334 6.76e-39 145
Msa1428660 AT5G61680.1 31.111 315 190 9 218 524 63 358 3.19e-37 141
Msa1428660 AT5G07420.1 31.529 314 189 8 218 524 61 355 4.94e-37 140
Msa1428660 AT2G19150.1 33.684 285 164 7 224 499 41 309 1.19e-35 136
Msa1428660 AT1G69940.1 29.712 313 196 9 218 524 61 355 4.68e-35 135
Msa1428660 AT5G07410.1 29.712 313 196 9 218 524 61 355 7.77e-35 134
Msa1428660 AT5G26810.1 31.529 314 192 6 222 524 32 333 1.77e-34 133
Msa1428660 AT2G19150.2 33.597 253 145 6 224 467 41 279 1.24e-31 124
Msa1428660 AT2G47280.1 30.745 322 191 10 224 534 35 335 1.43e-31 125
Msa1428660 AT3G49220.2 32.343 303 159 10 39 312 131 416 2.72e-27 114

Find 88 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGACAATAGATTACATATT+TGG 0.158912 tig0026406:+26823 Msa1428660:CDS
TATGGTGAGTTTGCAAATTA+TGG 0.168452 tig0026406:+27156 Msa1428660:CDS
ATCCTAGCATAGCTGTTATT+TGG 0.183966 tig0026406:-26070 None:intergenic
GCAAATTATGGACCTGGTTC+TGG 0.184725 tig0026406:+27168 Msa1428660:CDS
GGCCTTGGAGGGTTTATTCT+AGG 0.265089 tig0026406:+27037 Msa1428660:CDS
TAGCTAAAATCGAACAGTTT+TGG 0.265371 tig0026406:-26966 None:intergenic
GGGTTGGACACTTTGTATTA+TGG 0.267381 tig0026406:+27138 Msa1428660:CDS
ACATGGAAACCGGCGTTTAA+TGG 0.268525 tig0026406:+25922 Msa1428660:CDS
ACTGTTTCAGAGTTTATTAT+TGG 0.274401 tig0026406:+27255 Msa1428660:CDS
GAAAGCTTAGATTCTGCTTC+AGG 0.295028 tig0026406:+25797 Msa1428660:CDS
ATCACCAAGTAGAACAATAT+TGG 0.295403 tig0026406:-26152 None:intergenic
ATGGTTAGGGTATCATTTAA+TGG 0.316270 tig0026406:+27209 Msa1428660:CDS
GATGAATTGAAGCAAACTTC+AGG 0.327484 tig0026406:-25485 None:intergenic
AAAGTCAATGGCTTCATTAA+TGG 0.338627 tig0026406:-26044 None:intergenic
TGGTCTTATGATGATGATAA+AGG 0.352618 tig0026406:+27117 Msa1428660:CDS
TTCTAAACATGTGTTCTTGT+TGG 0.356337 tig0026406:-25777 None:intergenic
ACCTTCAGATCTGCAACTTT+AGG 0.361505 tig0026406:+26229 Msa1428660:CDS
AGAAGGATGTTAATGATGTT+TGG 0.368270 tig0026406:-25536 None:intergenic
CAAATTATGGACCTGGTTCT+GGG 0.376661 tig0026406:+27169 Msa1428660:CDS
CTGTCAGCGGTTTCTGGTGA+AGG 0.388701 tig0026406:+26625 Msa1428660:intron
GCAACTGCTTGATGCTTCTC+TGG 0.401565 tig0026406:-26688 None:intergenic
GATAACCGAGTGAAATGGTT+AGG 0.402758 tig0026406:+27195 Msa1428660:CDS
TCCATCAACATCACTTCTAT+TGG 0.413607 tig0026406:-26200 None:intergenic
AACATGTGTTCTTGTTGGTA+AGG 0.427562 tig0026406:-25772 None:intergenic
GAAGCTCTTACCTCAGGCTT+AGG 0.446698 tig0026406:-25893 None:intergenic
AGTTTATTATTGGTGATGCT+TGG 0.457881 tig0026406:+27265 Msa1428660:CDS
CCTTTAGAAGCTCTTACCTC+AGG 0.459729 tig0026406:-25899 None:intergenic
CTTCTAAAGGACATGGAAAC+CGG 0.462530 tig0026406:+25912 Msa1428660:CDS
AAAACCAATATTGTTCTACT+TGG 0.463086 tig0026406:+26148 Msa1428660:CDS
ATGAATTGAAGCAAACTTCA+GGG 0.465621 tig0026406:-25484 None:intergenic
ATTATTGGTGATGCTTGGAT+TGG 0.469612 tig0026406:+27270 Msa1428660:CDS
ATAATAATCTATGTGAAAGA+AGG 0.472192 tig0026406:+26091 Msa1428660:CDS
AGAGTTACCTTGGAAGGCCT+TGG 0.474243 tig0026406:+27022 Msa1428660:CDS
GATCAAATCCCATCATCATA+AGG 0.490605 tig0026406:-27306 None:intergenic
GTTATTTGGAGCAAAGTCAA+TGG 0.493661 tig0026406:-26056 None:intergenic
GCCAATAGAAGTGATGTTGA+TGG 0.496027 tig0026406:+26199 Msa1428660:CDS
TTGAAGCAAACTTCAGGGTA+TGG 0.499680 tig0026406:-25479 None:intergenic
CGGTTATCCGTCCCAGAACC+AGG 0.500538 tig0026406:-27180 None:intergenic
GAAATGCCAGTGTCTTCATC+AGG 0.503049 tig0026406:-26940 None:intergenic
AATATTGTTCTACTTGGTGA+TGG 0.507544 tig0026406:+26154 Msa1428660:CDS
TTTCAGATATTGATACTTGG+AGG 0.508364 tig0026406:-25565 None:intergenic
AGCCACAACAATCACATTGT+CGG 0.515378 tig0026406:-25996 None:intergenic
GGACGGATAACCGAGTGAAA+TGG 0.516534 tig0026406:+27190 Msa1428660:CDS
TAATAATCTATGTGAAAGAA+GGG 0.519631 tig0026406:+26092 Msa1428660:CDS
TGATGTGTTCATTGATCCAA+TGG 0.520276 tig0026406:+27083 Msa1428660:CDS
GTTACCTTGGAAGGCCTTGG+AGG 0.522680 tig0026406:+27025 Msa1428660:CDS
GGTCTTATGATGATGATAAA+GGG 0.524014 tig0026406:+27118 Msa1428660:CDS
AACATCATAGAGAACAAAAG+AGG 0.532418 tig0026406:+25626 Msa1428660:CDS
GTGATTGTTGTGGCTGCAGA+TGG 0.533920 tig0026406:+26004 Msa1428660:CDS
TGGTTTCAGATATTGATACT+TGG 0.536909 tig0026406:-25568 None:intergenic
GAATTGATTAGATAGCTTTG+TGG 0.536977 tig0026406:-25588 None:intergenic
ACAGTGTATTGGTTAGGTAA+TGG 0.537504 tig0026406:-26892 None:intergenic
TGAAAGCTAAAGTGTGTGAA+TGG 0.538443 tig0026406:-25385 None:intergenic
GTTGTGGCTGCAGATGGAAC+TGG 0.540466 tig0026406:+26010 Msa1428660:CDS
TTCAGATATTGATACTTGGA+GGG 0.549415 tig0026406:-25564 None:intergenic
ACATGTGTTCTTGTTGGTAA+GGG 0.551234 tig0026406:-25771 None:intergenic
ACCTAAAGTTGCAGATCTGA+AGG 0.551357 tig0026406:-26230 None:intergenic
ATACTTGGAGGGAATGAAGA+AGG 0.552774 tig0026406:-25553 None:intergenic
AACAACATGAAGAGTTACCT+TGG 0.555010 tig0026406:+27012 Msa1428660:CDS
GTGATGACAGTGTATTGGTT+AGG 0.562594 tig0026406:-26898 None:intergenic
TTATGATGATGATAAAGGGT+TGG 0.572416 tig0026406:+27122 Msa1428660:CDS
GACCACTTAGTCCATCCCAT+TGG 0.576798 tig0026406:-27099 None:intergenic
TTACCTTGGAAGGCCTTGGA+GGG 0.578441 tig0026406:+27026 Msa1428660:CDS
AAACCCTCCAAGGCCTTCCA+AGG 0.578788 tig0026406:-27029 None:intergenic
GTGCAGTGATGACAGTGTAT+TGG 0.580428 tig0026406:-26903 None:intergenic
ATAACCGAGTGAAATGGTTA+GGG 0.580443 tig0026406:+27196 Msa1428660:CDS
ATCCAATGGGATGGACTAAG+TGG 0.585499 tig0026406:+27097 Msa1428660:CDS
GTAAGAGCTTCTAAAGGACA+TGG 0.586185 tig0026406:+25905 Msa1428660:CDS
ACATGAAGAGTTACCTTGGA+AGG 0.588730 tig0026406:+27016 Msa1428660:CDS
GAGTTTGCAAATTATGGACC+TGG 0.593606 tig0026406:+27162 Msa1428660:CDS
AGTGAACATAAAGTGTGTCT+TGG 0.595293 tig0026406:-26765 None:intergenic
CTCCAAATAACAGCTATGCT+AGG 0.598592 tig0026406:+26068 Msa1428660:CDS
GTTTAATGGATTCTCTCATG+TGG 0.602528 tig0026406:+25936 Msa1428660:CDS
TTATGGACCTGGTTCTGGGA+CGG 0.609432 tig0026406:+27173 Msa1428660:CDS
GTCCTAGAATAAACCCTCCA+AGG 0.611715 tig0026406:-27039 None:intergenic
CCTGAGGTAAGAGCTTCTAA+AGG 0.619587 tig0026406:+25899 Msa1428660:CDS
GTCAATGTTTCCTAAGCCTG+AGG 0.626799 tig0026406:+25883 Msa1428660:CDS
CAATGTTGTTGTGGAAGAAG+TGG 0.630302 tig0026406:-25414 None:intergenic
GTATGGAGTAGTTCTGCAGA+AGG 0.632268 tig0026406:-25462 None:intergenic
TGTTCATTGATCCAATGGGA+TGG 0.634149 tig0026406:+27088 Msa1428660:CDS
GATGTGTTCATTGATCCAAT+GGG 0.636999 tig0026406:+27084 Msa1428660:CDS
ATAGAAGTGATGTTGATGGA+TGG 0.641423 tig0026406:+26203 Msa1428660:CDS
GATTCACCTGATGAAGACAC+TGG 0.652328 tig0026406:+26934 Msa1428660:CDS
GATACCCTAACCATTTCACT+CGG 0.660268 tig0026406:-27200 None:intergenic
CACCGACAATGTGATTGTTG+TGG 0.664096 tig0026406:+25994 Msa1428660:CDS
TGAGAGAATCCATTAAACGC+CGG 0.664960 tig0026406:-25931 None:intergenic
TAAAGTTGCAGATCTGAAGG+TGG 0.679551 tig0026406:-26227 None:intergenic
TGTGAAAGAAGGGATATACG+AGG 0.755347 tig0026406:+26102 Msa1428660:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAAAAATGTCTCAATTTT+TGG + tig0026406:26410-26429 Msa1428660:intron 15.0%
!!! ATAAAAAATGTCTCAATTTT+TGG + tig0026406:26410-26429 Msa1428660:intron 15.0%
!! ATAATAATCTATGTGAAAGA+AGG + tig0026406:26091-26110 Msa1428660:CDS 20.0%
!! TAATAATCTATGTGAAAGAA+GGG + tig0026406:26092-26111 Msa1428660:CDS 20.0%
!! CTGACAGAAAAAAAAAATAA+GGG - tig0026406:26612-26631 None:intergenic 20.0%
!!! TTATTTTTTTTTTCTGTCAG+CGG + tig0026406:26612-26631 Msa1428660:intron 20.0%
!! ATAATAATCTATGTGAAAGA+AGG + tig0026406:26091-26110 Msa1428660:CDS 20.0%
!! TAATAATCTATGTGAAAGAA+GGG + tig0026406:26092-26111 Msa1428660:CDS 20.0%
!! CTGACAGAAAAAAAAAATAA+GGG - tig0026406:26612-26631 None:intergenic 20.0%
!!! TTATTTTTTTTTTCTGTCAG+CGG + tig0026406:26612-26631 Msa1428660:intron 20.0%
!!! TGATCTTTTTAGTGAAGATA+AGG - tig0026406:25687-25706 None:intergenic 25.0%
! TCACTAAAAAGATCATTATC+TGG + tig0026406:25692-25711 Msa1428660:CDS 25.0%
! AAAACCAATATTGTTCTACT+TGG + tig0026406:26148-26167 Msa1428660:CDS 25.0%
! ACTCAATTTCTAACGAATAA+AGG - tig0026406:26348-26367 None:intergenic 25.0%
!!! TCTCAATTTTTGGATAGTAA+TGG + tig0026406:26420-26439 Msa1428660:intron 25.0%
!!! CTCAATTTTTGGATAGTAAT+GGG + tig0026406:26421-26440 Msa1428660:intron 25.0%
! GACACAATACTATAATTTCA+AGG - tig0026406:26520-26539 None:intergenic 25.0%
! GCTGACAGAAAAAAAAAATA+AGG - tig0026406:26613-26632 None:intergenic 25.0%
!! TTTTACAAATGTGCAATGTA+TGG + tig0026406:26739-26758 Msa1428660:CDS 25.0%
! ACTGTTTCAGAGTTTATTAT+TGG + tig0026406:27255-27274 Msa1428660:CDS 25.0%
!!! TGATCTTTTTAGTGAAGATA+AGG - tig0026406:25687-25706 None:intergenic 25.0%
! TCACTAAAAAGATCATTATC+TGG + tig0026406:25692-25711 Msa1428660:CDS 25.0%
! AAAACCAATATTGTTCTACT+TGG + tig0026406:26148-26167 Msa1428660:CDS 25.0%
! ACTCAATTTCTAACGAATAA+AGG - tig0026406:26348-26367 None:intergenic 25.0%
!!! TCTCAATTTTTGGATAGTAA+TGG + tig0026406:26420-26439 Msa1428660:intron 25.0%
!!! CTCAATTTTTGGATAGTAAT+GGG + tig0026406:26421-26440 Msa1428660:intron 25.0%
! GACACAATACTATAATTTCA+AGG - tig0026406:26520-26539 None:intergenic 25.0%
! GCTGACAGAAAAAAAAAATA+AGG - tig0026406:26613-26632 None:intergenic 25.0%
!! TTTTACAAATGTGCAATGTA+TGG + tig0026406:26739-26758 Msa1428660:CDS 25.0%
! ACTGTTTCAGAGTTTATTAT+TGG + tig0026406:27255-27274 Msa1428660:CDS 25.0%
ATGAATTGAAGCAAACTTCA+GGG - tig0026406:25487-25506 None:intergenic 30.0%
AGAAGGATGTTAATGATGTT+TGG - tig0026406:25539-25558 None:intergenic 30.0%
TTCAGATATTGATACTTGGA+GGG - tig0026406:25567-25586 None:intergenic 30.0%
TTTCAGATATTGATACTTGG+AGG - tig0026406:25568-25587 None:intergenic 30.0%
TGGTTTCAGATATTGATACT+TGG - tig0026406:25571-25590 None:intergenic 30.0%
! GAATTGATTAGATAGCTTTG+TGG - tig0026406:25591-25610 None:intergenic 30.0%
AACATCATAGAGAACAAAAG+AGG + tig0026406:25626-25645 Msa1428660:CDS 30.0%
TTCTAAACATGTGTTCTTGT+TGG - tig0026406:25780-25799 None:intergenic 30.0%
AAAGTCAATGGCTTCATTAA+TGG - tig0026406:26047-26066 None:intergenic 30.0%
ATCACCAAGTAGAACAATAT+TGG - tig0026406:26155-26174 None:intergenic 30.0%
! AATATTGTTCTACTTGGTGA+TGG + tig0026406:26154-26173 Msa1428660:CDS 30.0%
TGAGTCAATTGACTAAATGT+TGG + tig0026406:26363-26382 Msa1428660:intron 30.0%
!!! TTGGATAGTAATGGGTATTT+TGG + tig0026406:26429-26448 Msa1428660:intron 30.0%
!!! TTTTGGTTTCTTAGAAATCC+TGG + tig0026406:26446-26465 Msa1428660:intron 30.0%
CTCAATTGTGAGAATAACAA+CGG - tig0026406:26480-26499 None:intergenic 30.0%
TTGACATATCGATGATATGA+GGG - tig0026406:26551-26570 None:intergenic 30.0%
TTTGACATATCGATGATATG+AGG - tig0026406:26552-26571 None:intergenic 30.0%
!! TGATATAGCTTTTGAGAACA+AGG + tig0026406:26660-26679 Msa1428660:CDS 30.0%
!! TATAGAGAGTGTGACATTTT+TGG + tig0026406:26802-26821 Msa1428660:CDS 30.0%
!! ATAGAGAGTGTGACATTTTT+GGG + tig0026406:26803-26822 Msa1428660:CDS 30.0%
GGGACAATAGATTACATATT+TGG + tig0026406:26823-26842 Msa1428660:CDS 30.0%
! TAGCTAAAATCGAACAGTTT+TGG - tig0026406:26969-26988 None:intergenic 30.0%
!! TGGTCTTATGATGATGATAA+AGG + tig0026406:27117-27136 Msa1428660:CDS 30.0%
! GGTCTTATGATGATGATAAA+GGG + tig0026406:27118-27137 Msa1428660:CDS 30.0%
! TTATGATGATGATAAAGGGT+TGG + tig0026406:27122-27141 Msa1428660:CDS 30.0%
TATGGTGAGTTTGCAAATTA+TGG + tig0026406:27156-27175 Msa1428660:CDS 30.0%
! ATGGTTAGGGTATCATTTAA+TGG + tig0026406:27209-27228 Msa1428660:CDS 30.0%
!! AGTTTATTATTGGTGATGCT+TGG + tig0026406:27265-27284 Msa1428660:CDS 30.0%
! ACTTCTTTTCCTTATGATGA+TGG + tig0026406:27297-27316 Msa1428660:CDS 30.0%
! CTTCTTTTCCTTATGATGAT+GGG + tig0026406:27298-27317 Msa1428660:CDS 30.0%
ATGAATTGAAGCAAACTTCA+GGG - tig0026406:25487-25506 None:intergenic 30.0%
AGAAGGATGTTAATGATGTT+TGG - tig0026406:25539-25558 None:intergenic 30.0%
TTCAGATATTGATACTTGGA+GGG - tig0026406:25567-25586 None:intergenic 30.0%
TTTCAGATATTGATACTTGG+AGG - tig0026406:25568-25587 None:intergenic 30.0%
TGGTTTCAGATATTGATACT+TGG - tig0026406:25571-25590 None:intergenic 30.0%
! GAATTGATTAGATAGCTTTG+TGG - tig0026406:25591-25610 None:intergenic 30.0%
AACATCATAGAGAACAAAAG+AGG + tig0026406:25626-25645 Msa1428660:CDS 30.0%
TTCTAAACATGTGTTCTTGT+TGG - tig0026406:25780-25799 None:intergenic 30.0%
AAAGTCAATGGCTTCATTAA+TGG - tig0026406:26047-26066 None:intergenic 30.0%
ATCACCAAGTAGAACAATAT+TGG - tig0026406:26155-26174 None:intergenic 30.0%
! AATATTGTTCTACTTGGTGA+TGG + tig0026406:26154-26173 Msa1428660:CDS 30.0%
TGAGTCAATTGACTAAATGT+TGG + tig0026406:26363-26382 Msa1428660:intron 30.0%
!!! TTGGATAGTAATGGGTATTT+TGG + tig0026406:26429-26448 Msa1428660:intron 30.0%
!!! TTTTGGTTTCTTAGAAATCC+TGG + tig0026406:26446-26465 Msa1428660:intron 30.0%
CTCAATTGTGAGAATAACAA+CGG - tig0026406:26480-26499 None:intergenic 30.0%
TTGACATATCGATGATATGA+GGG - tig0026406:26551-26570 None:intergenic 30.0%
TTTGACATATCGATGATATG+AGG - tig0026406:26552-26571 None:intergenic 30.0%
!! TGATATAGCTTTTGAGAACA+AGG + tig0026406:26660-26679 Msa1428660:CDS 30.0%
!! TATAGAGAGTGTGACATTTT+TGG + tig0026406:26802-26821 Msa1428660:CDS 30.0%
!! ATAGAGAGTGTGACATTTTT+GGG + tig0026406:26803-26822 Msa1428660:CDS 30.0%
GGGACAATAGATTACATATT+TGG + tig0026406:26823-26842 Msa1428660:CDS 30.0%
! TAGCTAAAATCGAACAGTTT+TGG - tig0026406:26969-26988 None:intergenic 30.0%
!! TGGTCTTATGATGATGATAA+AGG + tig0026406:27117-27136 Msa1428660:CDS 30.0%
! GGTCTTATGATGATGATAAA+GGG + tig0026406:27118-27137 Msa1428660:CDS 30.0%
! TTATGATGATGATAAAGGGT+TGG + tig0026406:27122-27141 Msa1428660:CDS 30.0%
TATGGTGAGTTTGCAAATTA+TGG + tig0026406:27156-27175 Msa1428660:CDS 30.0%
! ATGGTTAGGGTATCATTTAA+TGG + tig0026406:27209-27228 Msa1428660:CDS 30.0%
!! AGTTTATTATTGGTGATGCT+TGG + tig0026406:27265-27284 Msa1428660:CDS 30.0%
! ACTTCTTTTCCTTATGATGA+TGG + tig0026406:27297-27316 Msa1428660:CDS 30.0%
! CTTCTTTTCCTTATGATGAT+GGG + tig0026406:27298-27317 Msa1428660:CDS 30.0%
TGAAAGCTAAAGTGTGTGAA+TGG - tig0026406:25388-25407 None:intergenic 35.0%
! TTTTGCATGCAATGTTGTTG+TGG - tig0026406:25426-25445 None:intergenic 35.0%
GATGAATTGAAGCAAACTTC+AGG - tig0026406:25488-25507 None:intergenic 35.0%
! ACATGTGTTCTTGTTGGTAA+GGG - tig0026406:25774-25793 None:intergenic 35.0%
AACATGTGTTCTTGTTGGTA+AGG - tig0026406:25775-25794 None:intergenic 35.0%
!! GTTTAATGGATTCTCTCATG+TGG + tig0026406:25936-25955 Msa1428660:CDS 35.0%
! GTTATTTGGAGCAAAGTCAA+TGG - tig0026406:26059-26078 None:intergenic 35.0%
ATCCTAGCATAGCTGTTATT+TGG - tig0026406:26073-26092 None:intergenic 35.0%
TCCATCAACATCACTTCTAT+TGG - tig0026406:26203-26222 None:intergenic 35.0%
! ATAGAAGTGATGTTGATGGA+TGG + tig0026406:26203-26222 Msa1428660:CDS 35.0%
AGTTGAAATTCATGTGTCAC+CGG + tig0026406:26317-26336 Msa1428660:intron 35.0%
AGTGAACATAAAGTGTGTCT+TGG - tig0026406:26768-26787 None:intergenic 35.0%
!! AAATGCAGCAGTAGTTTTAC+AGG + tig0026406:26846-26865 Msa1428660:CDS 35.0%
!! ACAGTGTATTGGTTAGGTAA+TGG - tig0026406:26895-26914 None:intergenic 35.0%
AACAACATGAAGAGTTACCT+TGG + tig0026406:27012-27031 Msa1428660:CDS 35.0%
TGATGTGTTCATTGATCCAA+TGG + tig0026406:27083-27102 Msa1428660:CDS 35.0%
GATGTGTTCATTGATCCAAT+GGG + tig0026406:27084-27103 Msa1428660:CDS 35.0%
ATAACCGAGTGAAATGGTTA+GGG + tig0026406:27196-27215 Msa1428660:CDS 35.0%
!! ATTATTGGTGATGCTTGGAT+TGG + tig0026406:27270-27289 Msa1428660:CDS 35.0%
TGAAAGCTAAAGTGTGTGAA+TGG - tig0026406:25388-25407 None:intergenic 35.0%
! TTTTGCATGCAATGTTGTTG+TGG - tig0026406:25426-25445 None:intergenic 35.0%
GATGAATTGAAGCAAACTTC+AGG - tig0026406:25488-25507 None:intergenic 35.0%
! ACATGTGTTCTTGTTGGTAA+GGG - tig0026406:25774-25793 None:intergenic 35.0%
AACATGTGTTCTTGTTGGTA+AGG - tig0026406:25775-25794 None:intergenic 35.0%
!! GTTTAATGGATTCTCTCATG+TGG + tig0026406:25936-25955 Msa1428660:CDS 35.0%
! GTTATTTGGAGCAAAGTCAA+TGG - tig0026406:26059-26078 None:intergenic 35.0%
ATCCTAGCATAGCTGTTATT+TGG - tig0026406:26073-26092 None:intergenic 35.0%
TCCATCAACATCACTTCTAT+TGG - tig0026406:26203-26222 None:intergenic 35.0%
! ATAGAAGTGATGTTGATGGA+TGG + tig0026406:26203-26222 Msa1428660:CDS 35.0%
AGTTGAAATTCATGTGTCAC+CGG + tig0026406:26317-26336 Msa1428660:intron 35.0%
AGTGAACATAAAGTGTGTCT+TGG - tig0026406:26768-26787 None:intergenic 35.0%
!! AAATGCAGCAGTAGTTTTAC+AGG + tig0026406:26846-26865 Msa1428660:CDS 35.0%
!! ACAGTGTATTGGTTAGGTAA+TGG - tig0026406:26895-26914 None:intergenic 35.0%
AACAACATGAAGAGTTACCT+TGG + tig0026406:27012-27031 Msa1428660:CDS 35.0%
TGATGTGTTCATTGATCCAA+TGG + tig0026406:27083-27102 Msa1428660:CDS 35.0%
GATGTGTTCATTGATCCAAT+GGG + tig0026406:27084-27103 Msa1428660:CDS 35.0%
ATAACCGAGTGAAATGGTTA+GGG + tig0026406:27196-27215 Msa1428660:CDS 35.0%
!! ATTATTGGTGATGCTTGGAT+TGG + tig0026406:27270-27289 Msa1428660:CDS 35.0%
CAATGTTGTTGTGGAAGAAG+TGG - tig0026406:25417-25436 None:intergenic 40.0%
TTGAAGCAAACTTCAGGGTA+TGG - tig0026406:25482-25501 None:intergenic 40.0%
ATACTTGGAGGGAATGAAGA+AGG - tig0026406:25556-25575 None:intergenic 40.0%
GAAAGCTTAGATTCTGCTTC+AGG + tig0026406:25797-25816 Msa1428660:CDS 40.0%
! GTAAGAGCTTCTAAAGGACA+TGG + tig0026406:25905-25924 Msa1428660:CDS 40.0%
! CTTCTAAAGGACATGGAAAC+CGG + tig0026406:25912-25931 Msa1428660:CDS 40.0%
TGAGAGAATCCATTAAACGC+CGG - tig0026406:25934-25953 None:intergenic 40.0%
TGTCAAGCAAAAATCATCGC+AGG + tig0026406:25960-25979 Msa1428660:CDS 40.0%
AGCCACAACAATCACATTGT+CGG - tig0026406:25999-26018 None:intergenic 40.0%
CTCCAAATAACAGCTATGCT+AGG + tig0026406:26068-26087 Msa1428660:CDS 40.0%
TGTGAAAGAAGGGATATACG+AGG + tig0026406:26102-26121 Msa1428660:CDS 40.0%
GCCAATAGAAGTGATGTTGA+TGG + tig0026406:26199-26218 Msa1428660:CDS 40.0%
TAAAGTTGCAGATCTGAAGG+TGG - tig0026406:26230-26249 None:intergenic 40.0%
ACCTTCAGATCTGCAACTTT+AGG + tig0026406:26229-26248 Msa1428660:CDS 40.0%
ACCTAAAGTTGCAGATCTGA+AGG - tig0026406:26233-26252 None:intergenic 40.0%
! CTAACGAATAAAGGACTAGC+CGG - tig0026406:26339-26358 None:intergenic 40.0%
!!! TTTTTTCTGTCAGCGGTTTC+TGG + tig0026406:26619-26638 Msa1428660:intron 40.0%
!! ATAGCTTTTGAGAACAAGGC+AGG + tig0026406:26664-26683 Msa1428660:CDS 40.0%
!! GTGATGACAGTGTATTGGTT+AGG - tig0026406:26901-26920 None:intergenic 40.0%
ACATGAAGAGTTACCTTGGA+AGG + tig0026406:27016-27035 Msa1428660:CDS 40.0%
TGTTCATTGATCCAATGGGA+TGG + tig0026406:27088-27107 Msa1428660:CDS 40.0%
GGGTTGGACACTTTGTATTA+TGG + tig0026406:27138-27157 Msa1428660:CDS 40.0%
GAGTTTGCAAATTATGGACC+TGG + tig0026406:27162-27181 Msa1428660:CDS 40.0%
! CAAATTATGGACCTGGTTCT+GGG + tig0026406:27169-27188 Msa1428660:CDS 40.0%
GATAACCGAGTGAAATGGTT+AGG + tig0026406:27195-27214 Msa1428660:CDS 40.0%
GATACCCTAACCATTTCACT+CGG - tig0026406:27203-27222 None:intergenic 40.0%
CAATGTTGTTGTGGAAGAAG+TGG - tig0026406:25417-25436 None:intergenic 40.0%
TTGAAGCAAACTTCAGGGTA+TGG - tig0026406:25482-25501 None:intergenic 40.0%
ATACTTGGAGGGAATGAAGA+AGG - tig0026406:25556-25575 None:intergenic 40.0%
GAAAGCTTAGATTCTGCTTC+AGG + tig0026406:25797-25816 Msa1428660:CDS 40.0%
! GTAAGAGCTTCTAAAGGACA+TGG + tig0026406:25905-25924 Msa1428660:CDS 40.0%
! CTTCTAAAGGACATGGAAAC+CGG + tig0026406:25912-25931 Msa1428660:CDS 40.0%
TGAGAGAATCCATTAAACGC+CGG - tig0026406:25934-25953 None:intergenic 40.0%
TGTCAAGCAAAAATCATCGC+AGG + tig0026406:25960-25979 Msa1428660:CDS 40.0%
AGCCACAACAATCACATTGT+CGG - tig0026406:25999-26018 None:intergenic 40.0%
CTCCAAATAACAGCTATGCT+AGG + tig0026406:26068-26087 Msa1428660:CDS 40.0%
TGTGAAAGAAGGGATATACG+AGG + tig0026406:26102-26121 Msa1428660:CDS 40.0%
GCCAATAGAAGTGATGTTGA+TGG + tig0026406:26199-26218 Msa1428660:CDS 40.0%
TAAAGTTGCAGATCTGAAGG+TGG - tig0026406:26230-26249 None:intergenic 40.0%
ACCTTCAGATCTGCAACTTT+AGG + tig0026406:26229-26248 Msa1428660:CDS 40.0%
ACCTAAAGTTGCAGATCTGA+AGG - tig0026406:26233-26252 None:intergenic 40.0%
! CTAACGAATAAAGGACTAGC+CGG - tig0026406:26339-26358 None:intergenic 40.0%
!!! TTTTTTCTGTCAGCGGTTTC+TGG + tig0026406:26619-26638 Msa1428660:intron 40.0%
!! ATAGCTTTTGAGAACAAGGC+AGG + tig0026406:26664-26683 Msa1428660:CDS 40.0%
!! GTGATGACAGTGTATTGGTT+AGG - tig0026406:26901-26920 None:intergenic 40.0%
ACATGAAGAGTTACCTTGGA+AGG + tig0026406:27016-27035 Msa1428660:CDS 40.0%
TGTTCATTGATCCAATGGGA+TGG + tig0026406:27088-27107 Msa1428660:CDS 40.0%
GGGTTGGACACTTTGTATTA+TGG + tig0026406:27138-27157 Msa1428660:CDS 40.0%
GAGTTTGCAAATTATGGACC+TGG + tig0026406:27162-27181 Msa1428660:CDS 40.0%
! CAAATTATGGACCTGGTTCT+GGG + tig0026406:27169-27188 Msa1428660:CDS 40.0%
GATAACCGAGTGAAATGGTT+AGG + tig0026406:27195-27214 Msa1428660:CDS 40.0%
GATACCCTAACCATTTCACT+CGG - tig0026406:27203-27222 None:intergenic 40.0%
! GTATGGAGTAGTTCTGCAGA+AGG - tig0026406:25465-25484 None:intergenic 45.0%
GTCAATGTTTCCTAAGCCTG+AGG + tig0026406:25883-25902 Msa1428660:CDS 45.0%
! CCTTTAGAAGCTCTTACCTC+AGG - tig0026406:25902-25921 None:intergenic 45.0%
CCTGAGGTAAGAGCTTCTAA+AGG + tig0026406:25899-25918 Msa1428660:CDS 45.0%
ACATGGAAACCGGCGTTTAA+TGG + tig0026406:25922-25941 Msa1428660:CDS 45.0%
CACCGACAATGTGATTGTTG+TGG + tig0026406:25994-26013 Msa1428660:CDS 45.0%
! ATAACAACGGACTTCTGACC+AGG - tig0026406:26467-26486 None:intergenic 45.0%
!!! GGTTTCTGGTGAAGGTTTTC+TGG + tig0026406:26633-26652 Msa1428660:CDS 45.0%
GTGCAGTGATGACAGTGTAT+TGG - tig0026406:26906-26925 None:intergenic 45.0%
GATTCACCTGATGAAGACAC+TGG + tig0026406:26934-26953 Msa1428660:CDS 45.0%
GAAATGCCAGTGTCTTCATC+AGG - tig0026406:26943-26962 None:intergenic 45.0%
GTCCTAGAATAAACCCTCCA+AGG - tig0026406:27042-27061 None:intergenic 45.0%
!! ATCCAATGGGATGGACTAAG+TGG + tig0026406:27097-27116 Msa1428660:CDS 45.0%
GCAAATTATGGACCTGGTTC+TGG + tig0026406:27168-27187 Msa1428660:CDS 45.0%
! GTATGGAGTAGTTCTGCAGA+AGG - tig0026406:25465-25484 None:intergenic 45.0%
GTCAATGTTTCCTAAGCCTG+AGG + tig0026406:25883-25902 Msa1428660:CDS 45.0%
! CCTTTAGAAGCTCTTACCTC+AGG - tig0026406:25902-25921 None:intergenic 45.0%
CCTGAGGTAAGAGCTTCTAA+AGG + tig0026406:25899-25918 Msa1428660:CDS 45.0%
ACATGGAAACCGGCGTTTAA+TGG + tig0026406:25922-25941 Msa1428660:CDS 45.0%
CACCGACAATGTGATTGTTG+TGG + tig0026406:25994-26013 Msa1428660:CDS 45.0%
! ATAACAACGGACTTCTGACC+AGG - tig0026406:26467-26486 None:intergenic 45.0%
!!! GGTTTCTGGTGAAGGTTTTC+TGG + tig0026406:26633-26652 Msa1428660:CDS 45.0%
GTGCAGTGATGACAGTGTAT+TGG - tig0026406:26906-26925 None:intergenic 45.0%
GATTCACCTGATGAAGACAC+TGG + tig0026406:26934-26953 Msa1428660:CDS 45.0%
GAAATGCCAGTGTCTTCATC+AGG - tig0026406:26943-26962 None:intergenic 45.0%
GTCCTAGAATAAACCCTCCA+AGG - tig0026406:27042-27061 None:intergenic 45.0%
!! ATCCAATGGGATGGACTAAG+TGG + tig0026406:27097-27116 Msa1428660:CDS 45.0%
GCAAATTATGGACCTGGTTC+TGG + tig0026406:27168-27187 Msa1428660:CDS 45.0%
GAAGCTCTTACCTCAGGCTT+AGG - tig0026406:25896-25915 None:intergenic 50.0%
GTGATTGTTGTGGCTGCAGA+TGG + tig0026406:26004-26023 Msa1428660:CDS 50.0%
GCAACTGCTTGATGCTTCTC+TGG - tig0026406:26691-26710 None:intergenic 50.0%
AGAGTTACCTTGGAAGGCCT+TGG + tig0026406:27022-27041 Msa1428660:CDS 50.0%
TTACCTTGGAAGGCCTTGGA+GGG + tig0026406:27026-27045 Msa1428660:CDS 50.0%
GGCCTTGGAGGGTTTATTCT+AGG + tig0026406:27037-27056 Msa1428660:CDS 50.0%
GACCACTTAGTCCATCCCAT+TGG - tig0026406:27102-27121 None:intergenic 50.0%
!! TTATGGACCTGGTTCTGGGA+CGG + tig0026406:27173-27192 Msa1428660:CDS 50.0%
GGACGGATAACCGAGTGAAA+TGG + tig0026406:27190-27209 Msa1428660:CDS 50.0%
GAAGCTCTTACCTCAGGCTT+AGG - tig0026406:25896-25915 None:intergenic 50.0%
GTGATTGTTGTGGCTGCAGA+TGG + tig0026406:26004-26023 Msa1428660:CDS 50.0%
GCAACTGCTTGATGCTTCTC+TGG - tig0026406:26691-26710 None:intergenic 50.0%
AGAGTTACCTTGGAAGGCCT+TGG + tig0026406:27022-27041 Msa1428660:CDS 50.0%
TTACCTTGGAAGGCCTTGGA+GGG + tig0026406:27026-27045 Msa1428660:CDS 50.0%
GGCCTTGGAGGGTTTATTCT+AGG + tig0026406:27037-27056 Msa1428660:CDS 50.0%
GACCACTTAGTCCATCCCAT+TGG - tig0026406:27102-27121 None:intergenic 50.0%
!! TTATGGACCTGGTTCTGGGA+CGG + tig0026406:27173-27192 Msa1428660:CDS 50.0%
GGACGGATAACCGAGTGAAA+TGG + tig0026406:27190-27209 Msa1428660:CDS 50.0%
GTTGTGGCTGCAGATGGAAC+TGG + tig0026406:26010-26029 Msa1428660:CDS 55.0%
!! CTGTCAGCGGTTTCTGGTGA+AGG + tig0026406:26625-26644 Msa1428660:intron 55.0%
GTTACCTTGGAAGGCCTTGG+AGG + tig0026406:27025-27044 Msa1428660:CDS 55.0%
AAACCCTCCAAGGCCTTCCA+AGG - tig0026406:27032-27051 None:intergenic 55.0%
GTTGTGGCTGCAGATGGAAC+TGG + tig0026406:26010-26029 Msa1428660:CDS 55.0%
!! CTGTCAGCGGTTTCTGGTGA+AGG + tig0026406:26625-26644 Msa1428660:intron 55.0%
GTTACCTTGGAAGGCCTTGG+AGG + tig0026406:27025-27044 Msa1428660:CDS 55.0%
AAACCCTCCAAGGCCTTCCA+AGG - tig0026406:27032-27051 None:intergenic 55.0%
CGGTTATCCGTCCCAGAACC+AGG - tig0026406:27183-27202 None:intergenic 60.0%
CGGTTATCCGTCCCAGAACC+AGG - tig0026406:27183-27202 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0026406 gene 25338 27326 25338 ID=Msa1428660;Name=Msa1428660
tig0026406 mRNA 25338 27326 25338 ID=Msa1428660-mRNA-1;Parent=Msa1428660;Name=Msa1428660-mRNA-1;_AED=0.42;_eAED=0.42;_QI=0|0|0|1|1|1|2|0|535
tig0026406 exon 25338 26250 25338 ID=Msa1428660-mRNA-1:exon:6099;Parent=Msa1428660-mRNA-1
tig0026406 exon 26632 27326 26632 ID=Msa1428660-mRNA-1:exon:6100;Parent=Msa1428660-mRNA-1
tig0026406 CDS 25338 26250 25338 ID=Msa1428660-mRNA-1:cds;Parent=Msa1428660-mRNA-1
tig0026406 CDS 26632 27326 26632 ID=Msa1428660-mRNA-1:cds;Parent=Msa1428660-mRNA-1
Gene Sequence

>Msa1428660

ATGGCTAATTTATCTTCTAAACTCTTTCTTCTTCTCTTAACAATCTTCCATTCACACACTTTAGCTTTCAACAACACCACTTCTTCCACAACAACATTGCATGCAAAAATCTCTTCAATAAAATCCTTCTGCAGAACTACTCCATACCCTGAAGTTTGCTTCAATTCATCAAAGCTATCAATCTCAATAAACATAAATCCAAACATCATTAACATCCTTCTTCATTCCCTCCAAGTATCAATATCTGAAACCACAAAGCTATCTAATCAATTCAACAATGCTCACTCAAACATCATAGAGAACAAAAGAGGAGCTATACAAGATTGCAAAGAACTTCAACAGTCTACCTTATCTTCACTAAAAAGATCATTATCTGGAATTCATTCATCAAAATATAGAAAGTTAGTTGATGCAAGAACTTATCTCAGTGCAGCCCTTACCAACAAGAACACATGTTTAGAAAGCTTAGATTCTGCTTCAGGTACAATGAAGCAAGTTTTAGTTGATTCAGTGATCAACACTTACAAGCATGTTAGTAATTCTCTGTCAATGTTTCCTAAGCCTGAGGTAAGAGCTTCTAAAGGACATGGAAACCGGCGTTTAATGGATTCTCTCATGTGGTTGTCAAGCAAAAATCATCGCAGGTTCTTACAAAGCACCGACAATGTGATTGTTGTGGCTGCAGATGGAACTGGAAACTTTAGCACCATTAATGAAGCCATTGACTTTGCTCCAAATAACAGCTATGCTAGGATAATAATCTATGTGAAAGAAGGGATATACGAGGAAAATGTTGAAATCTCAAGCAATAAAACCAATATTGTTCTACTTGGTGATGGAAATGATCTCACTGTCATTACTGCCAATAGAAGTGATGTTGATGGATGGACCACCTTCAGATCTGCAACTTTAGCGGTTTCTGGTGAAGGTTTTCTGGCACGTGATATAGCTTTTGAGAACAAGGCAGGACCAGAGAAGCATCAAGCAGTTGCATTAAGAGTGAATGCAGACATAACAGCTTTTTACAAATGTGCAATGTATGGTTACCAAGACACACTTTATGTTCACTCATTTAGACAATTCTATAGAGAGTGTGACATTTTTGGGACAATAGATTACATATTTGGAAATGCAGCAGTAGTTTTACAGGCATGTAACATTATATCAAGAATGCCATTACCTAACCAATACACTGTCATCACTGCACAGTCAAGAGATTCACCTGATGAAGACACTGGCATTTCAATCCAAAACTGTTCGATTTTAGCTACTACTGATTTGTATAACAACTTTAACAACATGAAGAGTTACCTTGGAAGGCCTTGGAGGGTTTATTCTAGGACTGTTTTCATTGAATCTTACATTGATGTGTTCATTGATCCAATGGGATGGACTAAGTGGTCTTATGATGATGATAAAGGGTTGGACACTTTGTATTATGGTGAGTTTGCAAATTATGGACCTGGTTCTGGGACGGATAACCGAGTGAAATGGTTAGGGTATCATTTAATGGATTTTGATAGTGCAAATAATTTCACTGTTTCAGAGTTTATTATTGGTGATGCTTGGATTGGTTCTACTTCTTTTCCTTATGATGATGGGATTTGA

Protein sequence

>Msa1428660

MANLSSKLFLLLLTIFHSHTLAFNNTTSSTTTLHAKISSIKSFCRTTPYPEVCFNSSKLSISININPNIINILLHSLQVSISETTKLSNQFNNAHSNIIENKRGAIQDCKELQQSTLSSLKRSLSGIHSSKYRKLVDARTYLSAALTNKNTCLESLDSASGTMKQVLVDSVINTYKHVSNSLSMFPKPEVRASKGHGNRRLMDSLMWLSSKNHRRFLQSTDNVIVVAADGTGNFSTINEAIDFAPNNSYARIIIYVKEGIYEENVEISSNKTNIVLLGDGNDLTVITANRSDVDGWTTFRSATLAVSGEGFLARDIAFENKAGPEKHQAVALRVNADITAFYKCAMYGYQDTLYVHSFRQFYRECDIFGTIDYIFGNAAVVLQACNIISRMPLPNQYTVITAQSRDSPDEDTGISIQNCSILATTDLYNNFNNMKSYLGRPWRVYSRTVFIESYIDVFIDPMGWTKWSYDDDKGLDTLYYGEFANYGPGSGTDNRVKWLGYHLMDFDSANNFTVSEFIIGDAWIGSTSFPYDDGI*