AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0684400


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0684400 MtrunA17_Chr4g0032291 55.833 120 4 1 43 113 46 165 1.44e-35 120
Msa0684400 MtrunA17_Chr4g0032581 50.336 149 22 4 14 113 8 153 1.78e-29 104
Msa0684400 MtrunA17_Chr4g0032571 49.275 138 21 2 12 101 1 137 1.76e-28 101
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0684400 AT2G26975.1 36.735 147 38 4 12 107 1 143 6.86e-18 74.7
Msa0684400 AT5G59030.1 33.065 124 30 3 43 113 45 168 1.01e-11 59.3
Msa0684400 AT3G46900.1 32.203 118 29 3 44 110 34 151 7.17e-11 56.6

Find 41 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGGGTTGGGTTAGCTTATT+TGG 0.161485 4_4:-47755606 Msa0684400:intron
GTTGATGATGATGATGGTTT+TGG 0.274914 4_4:+47755872 None:intergenic
AGAGGTTACTGTGTGGTTAC+AGG 0.278616 4_4:+47755964 None:intergenic
TCTTGTGTAGCAGTGCTATT+AGG 0.286924 4_4:-47755511 Msa0684400:CDS
TGATGCACATGACATTCTTC+TGG 0.303135 4_4:-47755811 Msa0684400:CDS
AATTTGAGGTTTACCATTCT+AGG 0.303206 4_4:-47754733 Msa0684400:CDS
ATGTAATAAATGTGTATTTA+GGG 0.312526 4_4:+47755996 None:intergenic
ACCCATCGTCATGGTGTTAT+TGG 0.332681 4_4:+47755850 None:intergenic
TAAGCCTTATCATCATGTTT+TGG 0.336110 4_4:+47755485 None:intergenic
AATGTAATAAATGTGTATTT+AGG 0.339646 4_4:+47755995 None:intergenic
TACTGTGTGGTTACAGGGTT+TGG 0.340111 4_4:+47755970 None:intergenic
CTTTAATTCTCTTCAACAAT+TGG 0.349322 4_4:-47755778 Msa0684400:CDS
GCTGTGCTTGGTCATGCTCT+TGG 0.350764 4_4:-47755539 Msa0684400:CDS
TTGGCTCTTATGTCTTTCAA+TGG 0.387989 4_4:-47755578 Msa0684400:CDS
GTTAGCTTATTTGGTTATGT+TGG 0.388968 4_4:-47755597 Msa0684400:intron
TTCAGGTGATTCAAAATTTG+AGG 0.415820 4_4:-47754747 Msa0684400:intron
AAATTTCGAGTTTCCTAGAA+TGG 0.422879 4_4:+47754720 None:intergenic
GAAACCAAAACATGATGATA+AGG 0.457740 4_4:-47755489 Msa0684400:CDS
GATGCACATGACATTCTTCT+GGG 0.470744 4_4:-47755810 Msa0684400:CDS
CTCTTCAACAATTGGCCTAA+CGG 0.488088 4_4:-47755770 Msa0684400:CDS
ATGCACGGTGGCGGCATGGA+TGG 0.492115 4_4:-47755908 Msa0684400:CDS
AATTGGCCTAACGGTGATAC+CGG 0.503435 4_4:-47755761 Msa0684400:intron
ACCAATAACACCATGACGAT+GGG 0.525984 4_4:-47755851 Msa0684400:CDS
TTATTGGTTGATGATGATGA+TGG 0.527547 4_4:+47755866 None:intergenic
CTCTTCAGATCTCACATCCA+TGG 0.529767 4_4:-47755945 Msa0684400:exon
GAGGTTACTGTGTGGTTACA+GGG 0.531390 4_4:+47755965 None:intergenic
GCTCTTATGTCTTTCAATGG+TGG 0.539076 4_4:-47755575 Msa0684400:CDS
GATCTCACATCCATGGATCA+TGG 0.541471 4_4:-47755938 Msa0684400:exon
GGTGATAACATGCACGGTGG+CGG 0.543777 4_4:-47755917 Msa0684400:CDS
CATGTTATCACCATGATCCA+TGG 0.568664 4_4:+47755928 None:intergenic
CATGGATGTGAGATCTGAAG+AGG 0.588461 4_4:+47755946 None:intergenic
TAACATGCACGGTGGCGGCA+TGG 0.601603 4_4:-47755912 Msa0684400:CDS
CATCTTATGACCCATCGTCA+TGG 0.601987 4_4:+47755841 None:intergenic
AACCAATAACACCATGACGA+TGG 0.604269 4_4:-47755852 Msa0684400:CDS
ACGATGGGTCATAAGATGCA+CGG 0.633997 4_4:-47755836 Msa0684400:CDS
AACAATTAACAAGACAAGGG+AGG 0.655863 4_4:+47755455 None:intergenic
TACATACCGGTATCACCGTT+AGG 0.669036 4_4:+47755755 None:intergenic
ATGCACATGACATTCTTCTG+GGG 0.684340 4_4:-47755809 Msa0684400:CDS
GATCATGGTGATAACATGCA+CGG 0.737979 4_4:-47755923 Msa0684400:CDS
CATGGTGATAACATGCACGG+TGG 0.779483 4_4:-47755920 Msa0684400:CDS
GATCTGAAGAGGTTACTGTG+TGG 0.856147 4_4:+47755957 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGTAATAAATGTGTATTTA+GGG + chr4_4:47754763-47754782 None:intergenic 15.0%
!! AATGTAATAAATGTGTATTT+AGG + chr4_4:47754764-47754783 None:intergenic 15.0%
!!! TATTTTTGAAGTAAAATTTG+AGG - chr4_4:47755456-47755475 Msa0684400:intron 15.0%
!! TAAGTAAATTTCTTACTAAT+TGG - chr4_4:47755552-47755571 Msa0684400:CDS 15.0%
!! ATATAATTGTTATGCAAAAT+GGG + chr4_4:47755956-47755975 None:intergenic 15.0%
!! AATATAATTGTTATGCAAAA+TGG + chr4_4:47755957-47755976 None:intergenic 15.0%
!!! AACAATTATATTTAGTTTTC+TGG - chr4_4:47755965-47755984 Msa0684400:five_prime_UTR 15.0%
!! ATGTAATAAATGTGTATTTA+GGG + chr4_4:47754763-47754782 None:intergenic 15.0%
!! AATGTAATAAATGTGTATTT+AGG + chr4_4:47754764-47754783 None:intergenic 15.0%
!!! TATTTTTGAAGTAAAATTTG+AGG - chr4_4:47755456-47755475 Msa0684400:intron 15.0%
!! TAAGTAAATTTCTTACTAAT+TGG - chr4_4:47755552-47755571 Msa0684400:CDS 15.0%
!! ATATAATTGTTATGCAAAAT+GGG + chr4_4:47755956-47755975 None:intergenic 15.0%
!! AATATAATTGTTATGCAAAA+TGG + chr4_4:47755957-47755976 None:intergenic 15.0%
!!! AACAATTATATTTAGTTTTC+TGG - chr4_4:47755965-47755984 Msa0684400:five_prime_UTR 15.0%
!! AAAAACAATTAACAAGACAA+GGG + chr4_4:47755307-47755326 None:intergenic 20.0%
!! TAAAAACAATTAACAAGACA+AGG + chr4_4:47755308-47755327 None:intergenic 20.0%
!!! TTATACTTTGTTTTATCTGT+TGG - chr4_4:47755341-47755360 Msa0684400:intron 20.0%
!! TTGTAATTGACTAATTGTTT+AGG - chr4_4:47755594-47755613 Msa0684400:CDS 20.0%
!!! CAAAAATGATTATTTGAGTT+TGG - chr4_4:47755656-47755675 Msa0684400:intron 20.0%
!! ATAAGTACAATAATATCCAA+AGG + chr4_4:47755799-47755818 None:intergenic 20.0%
!! AAAAACAATTAACAAGACAA+GGG + chr4_4:47755307-47755326 None:intergenic 20.0%
!! TAAAAACAATTAACAAGACA+AGG + chr4_4:47755308-47755327 None:intergenic 20.0%
!!! TTATACTTTGTTTTATCTGT+TGG - chr4_4:47755341-47755360 Msa0684400:intron 20.0%
!! TTGTAATTGACTAATTGTTT+AGG - chr4_4:47755594-47755613 Msa0684400:CDS 20.0%
!!! CAAAAATGATTATTTGAGTT+TGG - chr4_4:47755656-47755675 Msa0684400:intron 20.0%
!! ATAAGTACAATAATATCCAA+AGG + chr4_4:47755799-47755818 None:intergenic 20.0%
! CTTTAATTCTCTTCAACAAT+TGG - chr4_4:47754978-47754997 Msa0684400:intron 25.0%
!!! TTTTGTTATGAAATTGCAGT+TGG - chr4_4:47755418-47755437 Msa0684400:intron 25.0%
!!! TTTTGAAGTAAAATTTGAGG+TGG - chr4_4:47755459-47755478 Msa0684400:intron 25.0%
!! TTTGAAGTAAAATTTGAGGT+GGG - chr4_4:47755460-47755479 Msa0684400:intron 25.0%
!!! ATTTTTTGTTTACTCACCTT+TGG - chr4_4:47755780-47755799 Msa0684400:CDS 25.0%
!!! TTGCATCAAAAGTATTTTTC+AGG - chr4_4:47755992-47756011 Msa0684400:five_prime_UTR 25.0%
! CTTTAATTCTCTTCAACAAT+TGG - chr4_4:47754978-47754997 Msa0684400:intron 25.0%
!!! TTTTGTTATGAAATTGCAGT+TGG - chr4_4:47755418-47755437 Msa0684400:intron 25.0%
!!! TTTTGAAGTAAAATTTGAGG+TGG - chr4_4:47755459-47755478 Msa0684400:intron 25.0%
!! TTTGAAGTAAAATTTGAGGT+GGG - chr4_4:47755460-47755479 Msa0684400:intron 25.0%
!!! ATTTTTTGTTTACTCACCTT+TGG - chr4_4:47755780-47755799 Msa0684400:CDS 25.0%
!!! TTGCATCAAAAGTATTTTTC+AGG - chr4_4:47755992-47756011 Msa0684400:five_prime_UTR 25.0%
!! TTATTGGTTGATGATGATGA+TGG + chr4_4:47754893-47754912 None:intergenic 30.0%
TGAGAGTAATTCAATGAGTA+CGG + chr4_4:47755059-47755078 None:intergenic 30.0%
! GTTAGCTTATTTGGTTATGT+TGG - chr4_4:47755159-47755178 Msa0684400:intron 30.0%
GAAACCAAAACATGATGATA+AGG - chr4_4:47755267-47755286 Msa0684400:intron 30.0%
!! TAAGCCTTATCATCATGTTT+TGG + chr4_4:47755274-47755293 None:intergenic 30.0%
!! AAAGTACTACTATTTTGCAC+TGG - chr4_4:47755387-47755406 Msa0684400:intron 30.0%
! AAGTACTACTATTTTGCACT+GGG - chr4_4:47755388-47755407 Msa0684400:intron 30.0%
! TTGAAGTAAAATTTGAGGTG+GGG - chr4_4:47755461-47755480 Msa0684400:intron 30.0%
GAAATTTACTTATACCTGCA+AGG + chr4_4:47755544-47755563 None:intergenic 30.0%
AAAGTTTGTAGTCTAACTAC+GGG + chr4_4:47755751-47755770 None:intergenic 30.0%
CAAAGTTTGTAGTCTAACTA+CGG + chr4_4:47755752-47755771 None:intergenic 30.0%
GTAGTTAGACTACAAACTTT+GGG - chr4_4:47755751-47755770 Msa0684400:intron 30.0%
TTCAGGTGATTCAAAATTTG+AGG - chr4_4:47756009-47756028 Msa0684400:five_prime_UTR 30.0%
! AATTTGAGGTTTACCATTCT+AGG - chr4_4:47756023-47756042 Msa0684400:five_prime_UTR 30.0%
!! AAATTTCGAGTTTCCTAGAA+TGG + chr4_4:47756039-47756058 None:intergenic 30.0%
!! TTATTGGTTGATGATGATGA+TGG + chr4_4:47754893-47754912 None:intergenic 30.0%
TGAGAGTAATTCAATGAGTA+CGG + chr4_4:47755059-47755078 None:intergenic 30.0%
! GTTAGCTTATTTGGTTATGT+TGG - chr4_4:47755159-47755178 Msa0684400:intron 30.0%
GAAACCAAAACATGATGATA+AGG - chr4_4:47755267-47755286 Msa0684400:intron 30.0%
!! TAAGCCTTATCATCATGTTT+TGG + chr4_4:47755274-47755293 None:intergenic 30.0%
!! AAAGTACTACTATTTTGCAC+TGG - chr4_4:47755387-47755406 Msa0684400:intron 30.0%
! AAGTACTACTATTTTGCACT+GGG - chr4_4:47755388-47755407 Msa0684400:intron 30.0%
! TTGAAGTAAAATTTGAGGTG+GGG - chr4_4:47755461-47755480 Msa0684400:intron 30.0%
GAAATTTACTTATACCTGCA+AGG + chr4_4:47755544-47755563 None:intergenic 30.0%
AAAGTTTGTAGTCTAACTAC+GGG + chr4_4:47755751-47755770 None:intergenic 30.0%
CAAAGTTTGTAGTCTAACTA+CGG + chr4_4:47755752-47755771 None:intergenic 30.0%
GTAGTTAGACTACAAACTTT+GGG - chr4_4:47755751-47755770 Msa0684400:intron 30.0%
TTCAGGTGATTCAAAATTTG+AGG - chr4_4:47756009-47756028 Msa0684400:five_prime_UTR 30.0%
! AATTTGAGGTTTACCATTCT+AGG - chr4_4:47756023-47756042 Msa0684400:five_prime_UTR 30.0%
!! AAATTTCGAGTTTCCTAGAA+TGG + chr4_4:47756039-47756058 None:intergenic 30.0%
!!! GTTGATGATGATGATGGTTT+TGG + chr4_4:47754887-47754906 None:intergenic 35.0%
TGATACCGGTATGTATGTAT+TGG - chr4_4:47755009-47755028 Msa0684400:intron 35.0%
TTGAATTACTCTCACGTACA+CGG - chr4_4:47755065-47755084 Msa0684400:intron 35.0%
!! CAAAAGTGTCTGAAACAAAC+CGG + chr4_4:47755122-47755141 None:intergenic 35.0%
! AGACACTTTTGCATGTTCTT+AGG - chr4_4:47755131-47755150 Msa0684400:intron 35.0%
! GACACTTTTGCATGTTCTTA+GGG - chr4_4:47755132-47755151 Msa0684400:intron 35.0%
! TTTTGCATGTTCTTAGGGTT+GGG - chr4_4:47755137-47755156 Msa0684400:intron 35.0%
! TTGGCTCTTATGTCTTTCAA+TGG - chr4_4:47755178-47755197 Msa0684400:intron 35.0%
!! TTTCAATGGTGGTGTGTTTT+TGG - chr4_4:47755192-47755211 Msa0684400:intron 35.0%
AACAATTAACAAGACAAGGG+AGG + chr4_4:47755304-47755323 None:intergenic 35.0%
TTTGGCACTAGAGAAAACAA+TGG - chr4_4:47755674-47755693 Msa0684400:intron 35.0%
AAGTTTGTAGTCTAACTACG+GGG + chr4_4:47755750-47755769 None:intergenic 35.0%
CGTAGTTAGACTACAAACTT+TGG - chr4_4:47755750-47755769 Msa0684400:intron 35.0%
TACACATGATGACAGTTCTA+AGG + chr4_4:47755849-47755868 None:intergenic 35.0%
ATGTGTATCTGGTGAGAATT+AGG - chr4_4:47755862-47755881 Msa0684400:CDS 35.0%
TGTGTATCTGGTGAGAATTA+GGG - chr4_4:47755863-47755882 Msa0684400:CDS 35.0%
TAAACAAAACGTGTGGTAGA+GGG + chr4_4:47755929-47755948 None:intergenic 35.0%
TTAAACAAAACGTGTGGTAG+AGG + chr4_4:47755930-47755949 None:intergenic 35.0%
!!! GTTGATGATGATGATGGTTT+TGG + chr4_4:47754887-47754906 None:intergenic 35.0%
TGATACCGGTATGTATGTAT+TGG - chr4_4:47755009-47755028 Msa0684400:intron 35.0%
TTGAATTACTCTCACGTACA+CGG - chr4_4:47755065-47755084 Msa0684400:intron 35.0%
!! CAAAAGTGTCTGAAACAAAC+CGG + chr4_4:47755122-47755141 None:intergenic 35.0%
! AGACACTTTTGCATGTTCTT+AGG - chr4_4:47755131-47755150 Msa0684400:intron 35.0%
! GACACTTTTGCATGTTCTTA+GGG - chr4_4:47755132-47755151 Msa0684400:intron 35.0%
! TTTTGCATGTTCTTAGGGTT+GGG - chr4_4:47755137-47755156 Msa0684400:intron 35.0%
! TTGGCTCTTATGTCTTTCAA+TGG - chr4_4:47755178-47755197 Msa0684400:intron 35.0%
!! TTTCAATGGTGGTGTGTTTT+TGG - chr4_4:47755192-47755211 Msa0684400:intron 35.0%
AACAATTAACAAGACAAGGG+AGG + chr4_4:47755304-47755323 None:intergenic 35.0%
TTTGGCACTAGAGAAAACAA+TGG - chr4_4:47755674-47755693 Msa0684400:intron 35.0%
AAGTTTGTAGTCTAACTACG+GGG + chr4_4:47755750-47755769 None:intergenic 35.0%
CGTAGTTAGACTACAAACTT+TGG - chr4_4:47755750-47755769 Msa0684400:intron 35.0%
TACACATGATGACAGTTCTA+AGG + chr4_4:47755849-47755868 None:intergenic 35.0%
ATGTGTATCTGGTGAGAATT+AGG - chr4_4:47755862-47755881 Msa0684400:CDS 35.0%
TGTGTATCTGGTGAGAATTA+GGG - chr4_4:47755863-47755882 Msa0684400:CDS 35.0%
TAAACAAAACGTGTGGTAGA+GGG + chr4_4:47755929-47755948 None:intergenic 35.0%
TTAAACAAAACGTGTGGTAG+AGG + chr4_4:47755930-47755949 None:intergenic 35.0%
CATGTTATCACCATGATCCA+TGG + chr4_4:47754831-47754850 None:intergenic 40.0%
GATCATGGTGATAACATGCA+CGG - chr4_4:47754833-47754852 Msa0684400:intron 40.0%
!!! GATGATGATGATGGTTTTGG+TGG + chr4_4:47754884-47754903 None:intergenic 40.0%
AACCAATAACACCATGACGA+TGG - chr4_4:47754904-47754923 Msa0684400:intron 40.0%
ACCAATAACACCATGACGAT+GGG - chr4_4:47754905-47754924 Msa0684400:intron 40.0%
TGATGCACATGACATTCTTC+TGG - chr4_4:47754945-47754964 Msa0684400:intron 40.0%
GATGCACATGACATTCTTCT+GGG - chr4_4:47754946-47754965 Msa0684400:intron 40.0%
ATGCACATGACATTCTTCTG+GGG - chr4_4:47754947-47754966 Msa0684400:intron 40.0%
! CTCTTCAACAATTGGCCTAA+CGG - chr4_4:47754986-47755005 Msa0684400:intron 40.0%
CAACGCCAATACATACATAC+CGG + chr4_4:47755017-47755036 None:intergenic 40.0%
! CTTTTGCATGTTCTTAGGGT+TGG - chr4_4:47755136-47755155 Msa0684400:intron 40.0%
!! TAGGGTTGGGTTAGCTTATT+TGG - chr4_4:47755150-47755169 Msa0684400:intron 40.0%
GCTCTTATGTCTTTCAATGG+TGG - chr4_4:47755181-47755200 Msa0684400:intron 40.0%
! TCTTGTGTAGCAGTGCTATT+AGG - chr4_4:47755245-47755264 Msa0684400:intron 40.0%
GTTCTCTAATGCCTTGCATA+AGG - chr4_4:47755696-47755715 Msa0684400:intron 40.0%
TGTGTGAGATAATGACCCTT+TGG - chr4_4:47755723-47755742 Msa0684400:intron 40.0%
GAACTGTCATCATGTGTATC+TGG - chr4_4:47755851-47755870 Msa0684400:CDS 40.0%
GGGAACTTAAACAAAACGTG+TGG + chr4_4:47755936-47755955 None:intergenic 40.0%
CATGTTATCACCATGATCCA+TGG + chr4_4:47754831-47754850 None:intergenic 40.0%
GATCATGGTGATAACATGCA+CGG - chr4_4:47754833-47754852 Msa0684400:intron 40.0%
!!! GATGATGATGATGGTTTTGG+TGG + chr4_4:47754884-47754903 None:intergenic 40.0%
AACCAATAACACCATGACGA+TGG - chr4_4:47754904-47754923 Msa0684400:intron 40.0%
ACCAATAACACCATGACGAT+GGG - chr4_4:47754905-47754924 Msa0684400:intron 40.0%
TGATGCACATGACATTCTTC+TGG - chr4_4:47754945-47754964 Msa0684400:intron 40.0%
GATGCACATGACATTCTTCT+GGG - chr4_4:47754946-47754965 Msa0684400:intron 40.0%
ATGCACATGACATTCTTCTG+GGG - chr4_4:47754947-47754966 Msa0684400:intron 40.0%
! CTCTTCAACAATTGGCCTAA+CGG - chr4_4:47754986-47755005 Msa0684400:intron 40.0%
CAACGCCAATACATACATAC+CGG + chr4_4:47755017-47755036 None:intergenic 40.0%
! CTTTTGCATGTTCTTAGGGT+TGG - chr4_4:47755136-47755155 Msa0684400:intron 40.0%
!! TAGGGTTGGGTTAGCTTATT+TGG - chr4_4:47755150-47755169 Msa0684400:intron 40.0%
GCTCTTATGTCTTTCAATGG+TGG - chr4_4:47755181-47755200 Msa0684400:intron 40.0%
! TCTTGTGTAGCAGTGCTATT+AGG - chr4_4:47755245-47755264 Msa0684400:intron 40.0%
GTTCTCTAATGCCTTGCATA+AGG - chr4_4:47755696-47755715 Msa0684400:intron 40.0%
TGTGTGAGATAATGACCCTT+TGG - chr4_4:47755723-47755742 Msa0684400:intron 40.0%
GAACTGTCATCATGTGTATC+TGG - chr4_4:47755851-47755870 Msa0684400:CDS 40.0%
GGGAACTTAAACAAAACGTG+TGG + chr4_4:47755936-47755955 None:intergenic 40.0%
TACTGTGTGGTTACAGGGTT+TGG + chr4_4:47754789-47754808 None:intergenic 45.0%
GAGGTTACTGTGTGGTTACA+GGG + chr4_4:47754794-47754813 None:intergenic 45.0%
AGAGGTTACTGTGTGGTTAC+AGG + chr4_4:47754795-47754814 None:intergenic 45.0%
GATCTGAAGAGGTTACTGTG+TGG + chr4_4:47754802-47754821 None:intergenic 45.0%
CATGGATGTGAGATCTGAAG+AGG + chr4_4:47754813-47754832 None:intergenic 45.0%
CTCTTCAGATCTCACATCCA+TGG - chr4_4:47754811-47754830 Msa0684400:intron 45.0%
GATCTCACATCCATGGATCA+TGG - chr4_4:47754818-47754837 Msa0684400:intron 45.0%
!! ACCCATCGTCATGGTGTTAT+TGG + chr4_4:47754909-47754928 None:intergenic 45.0%
CATCTTATGACCCATCGTCA+TGG + chr4_4:47754918-47754937 None:intergenic 45.0%
ACGATGGGTCATAAGATGCA+CGG - chr4_4:47754920-47754939 Msa0684400:intron 45.0%
! AATTGGCCTAACGGTGATAC+CGG - chr4_4:47754995-47755014 Msa0684400:intron 45.0%
TACATACCGGTATCACCGTT+AGG + chr4_4:47755004-47755023 None:intergenic 45.0%
GTACGGACATGACGAAAACA+AGG + chr4_4:47755042-47755061 None:intergenic 45.0%
CGTACACGGTTCATTAAACC+CGG - chr4_4:47755079-47755098 Msa0684400:intron 45.0%
!!! GTGTTTTTGGTTGCTGTGCT+TGG - chr4_4:47755205-47755224 Msa0684400:intron 45.0%
ACTTATACCTGCAAGGACGT+AGG + chr4_4:47755537-47755556 None:intergenic 45.0%
TCACACATGCTCCTTATGCA+AGG + chr4_4:47755710-47755729 None:intergenic 45.0%
TACTGTGTGGTTACAGGGTT+TGG + chr4_4:47754789-47754808 None:intergenic 45.0%
GAGGTTACTGTGTGGTTACA+GGG + chr4_4:47754794-47754813 None:intergenic 45.0%
AGAGGTTACTGTGTGGTTAC+AGG + chr4_4:47754795-47754814 None:intergenic 45.0%
GATCTGAAGAGGTTACTGTG+TGG + chr4_4:47754802-47754821 None:intergenic 45.0%
CATGGATGTGAGATCTGAAG+AGG + chr4_4:47754813-47754832 None:intergenic 45.0%
CTCTTCAGATCTCACATCCA+TGG - chr4_4:47754811-47754830 Msa0684400:intron 45.0%
GATCTCACATCCATGGATCA+TGG - chr4_4:47754818-47754837 Msa0684400:intron 45.0%
!! ACCCATCGTCATGGTGTTAT+TGG + chr4_4:47754909-47754928 None:intergenic 45.0%
CATCTTATGACCCATCGTCA+TGG + chr4_4:47754918-47754937 None:intergenic 45.0%
ACGATGGGTCATAAGATGCA+CGG - chr4_4:47754920-47754939 Msa0684400:intron 45.0%
! AATTGGCCTAACGGTGATAC+CGG - chr4_4:47754995-47755014 Msa0684400:intron 45.0%
TACATACCGGTATCACCGTT+AGG + chr4_4:47755004-47755023 None:intergenic 45.0%
GTACGGACATGACGAAAACA+AGG + chr4_4:47755042-47755061 None:intergenic 45.0%
CGTACACGGTTCATTAAACC+CGG - chr4_4:47755079-47755098 Msa0684400:intron 45.0%
!!! GTGTTTTTGGTTGCTGTGCT+TGG - chr4_4:47755205-47755224 Msa0684400:intron 45.0%
ACTTATACCTGCAAGGACGT+AGG + chr4_4:47755537-47755556 None:intergenic 45.0%
TCACACATGCTCCTTATGCA+AGG + chr4_4:47755710-47755729 None:intergenic 45.0%
CATGGTGATAACATGCACGG+TGG - chr4_4:47754836-47754855 Msa0684400:intron 50.0%
GAAACAAACCGGCAGCAACA+TGG + chr4_4:47755111-47755130 None:intergenic 50.0%
ACTAACCCTAAATGAGCCCG+CGG + chr4_4:47755500-47755519 None:intergenic 50.0%
AGTTGAACCTACGTCCTTGC+AGG - chr4_4:47755527-47755546 Msa0684400:CDS 50.0%
GTCTAACTACGGGGTCCAAA+GGG + chr4_4:47755741-47755760 None:intergenic 50.0%
AGTCTAACTACGGGGTCCAA+AGG + chr4_4:47755742-47755761 None:intergenic 50.0%
CATGGTGATAACATGCACGG+TGG - chr4_4:47754836-47754855 Msa0684400:intron 50.0%
GAAACAAACCGGCAGCAACA+TGG + chr4_4:47755111-47755130 None:intergenic 50.0%
ACTAACCCTAAATGAGCCCG+CGG + chr4_4:47755500-47755519 None:intergenic 50.0%
AGTTGAACCTACGTCCTTGC+AGG - chr4_4:47755527-47755546 Msa0684400:CDS 50.0%
GTCTAACTACGGGGTCCAAA+GGG + chr4_4:47755741-47755760 None:intergenic 50.0%
AGTCTAACTACGGGGTCCAA+AGG + chr4_4:47755742-47755761 None:intergenic 50.0%
GGTGATAACATGCACGGTGG+CGG - chr4_4:47754839-47754858 Msa0684400:intron 55.0%
GCAGCAACATGGTTCGAACC+GGG + chr4_4:47755100-47755119 None:intergenic 55.0%
GGCAGCAACATGGTTCGAAC+CGG + chr4_4:47755101-47755120 None:intergenic 55.0%
GGTTCGAACCATGTTGCTGC+CGG - chr4_4:47755100-47755119 Msa0684400:intron 55.0%
GCTGTGCTTGGTCATGCTCT+TGG - chr4_4:47755217-47755236 Msa0684400:intron 55.0%
TTGAGGTGGGGATAGTTGCC+CGG - chr4_4:47755473-47755492 Msa0684400:CDS 55.0%
CTAACCCTAAATGAGCCCGC+GGG + chr4_4:47755499-47755518 None:intergenic 55.0%
GGTGATAACATGCACGGTGG+CGG - chr4_4:47754839-47754858 Msa0684400:intron 55.0%
GCAGCAACATGGTTCGAACC+GGG + chr4_4:47755100-47755119 None:intergenic 55.0%
GGCAGCAACATGGTTCGAAC+CGG + chr4_4:47755101-47755120 None:intergenic 55.0%
GGTTCGAACCATGTTGCTGC+CGG - chr4_4:47755100-47755119 Msa0684400:intron 55.0%
GCTGTGCTTGGTCATGCTCT+TGG - chr4_4:47755217-47755236 Msa0684400:intron 55.0%
TTGAGGTGGGGATAGTTGCC+CGG - chr4_4:47755473-47755492 Msa0684400:CDS 55.0%
CTAACCCTAAATGAGCCCGC+GGG + chr4_4:47755499-47755518 None:intergenic 55.0%
! TAACATGCACGGTGGCGGCA+TGG - chr4_4:47754844-47754863 Msa0684400:intron 60.0%
! TAACATGCACGGTGGCGGCA+TGG - chr4_4:47754844-47754863 Msa0684400:intron 60.0%
! ATGCACGGTGGCGGCATGGA+TGG - chr4_4:47754848-47754867 Msa0684400:intron 65.0%
! ATGCACGGTGGCGGCATGGA+TGG - chr4_4:47754848-47754867 Msa0684400:intron 65.0%
CCTAAATGAGCCCGCGGGCC+GGG + chr4_4:47755494-47755513 None:intergenic 70.0%
CCCTAAATGAGCCCGCGGGC+CGG + chr4_4:47755495-47755514 None:intergenic 70.0%
CCGGCCCGCGGGCTCATTTA+GGG - chr4_4:47755492-47755511 Msa0684400:CDS 70.0%
CCTAAATGAGCCCGCGGGCC+GGG + chr4_4:47755494-47755513 None:intergenic 70.0%
CCCTAAATGAGCCCGCGGGC+CGG + chr4_4:47755495-47755514 None:intergenic 70.0%
CCGGCCCGCGGGCTCATTTA+GGG - chr4_4:47755492-47755511 Msa0684400:CDS 70.0%
GGGGATAGTTGCCCGGCCCG+CGG - chr4_4:47755480-47755499 Msa0684400:CDS 75.0%
GGGATAGTTGCCCGGCCCGC+GGG - chr4_4:47755481-47755500 Msa0684400:CDS 75.0%
CCCGGCCCGCGGGCTCATTT+AGG - chr4_4:47755491-47755510 Msa0684400:CDS 75.0%
GGGGATAGTTGCCCGGCCCG+CGG - chr4_4:47755480-47755499 Msa0684400:CDS 75.0%
GGGATAGTTGCCCGGCCCGC+GGG - chr4_4:47755481-47755500 Msa0684400:CDS 75.0%
CCCGGCCCGCGGGCTCATTT+AGG - chr4_4:47755491-47755510 Msa0684400:CDS 75.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 47754718 47756060 47754718 ID=Msa0684400;Name=Msa0684400
chr4_4 mRNA 47754718 47756060 47754718 ID=Msa0684400-mRNA-1;Parent=Msa0684400;Name=Msa0684400-mRNA-1;_AED=0.23;_eAED=0.23;_QI=112|0|0.33|0.66|0|0.66|3|0|127
chr4_4 exon 47754718 47754764 47754718 ID=Msa0684400-mRNA-1:exon:11801;Parent=Msa0684400-mRNA-1
chr4_4 exon 47755465 47755614 47755465 ID=Msa0684400-mRNA-1:exon:11800;Parent=Msa0684400-mRNA-1
chr4_4 exon 47755762 47756060 47755762 ID=Msa0684400-mRNA-1:exon:11799;Parent=Msa0684400-mRNA-1
chr4_4 five_prime_UTR 47755949 47756060 47755949 ID=Msa0684400-mRNA-1:five_prime_utr;Parent=Msa0684400-mRNA-1
chr4_4 CDS 47755762 47755948 47755762 ID=Msa0684400-mRNA-1:cds;Parent=Msa0684400-mRNA-1
chr4_4 CDS 47755465 47755614 47755465 ID=Msa0684400-mRNA-1:cds;Parent=Msa0684400-mRNA-1
chr4_4 CDS 47754718 47754764 47754718 ID=Msa0684400-mRNA-1:cds;Parent=Msa0684400-mRNA-1
Gene Sequence

>Msa0684400

ATGGATCATGGTGATAACATGCACGGTGGCGGCATGGATGGAATGAACATGCCACCAAAACCATCATCATCATCAACCAATAACACCATGACGATGGGTCATAAGATGCACGGCATGATGCACATGACATTCTTCTGGGGAAAAGATGCTTTAATTCTCTTCAACAATTGGCCTAACGGTGATACCGCTTATTTGGTTATGTTGGCTCTTATGTCTTTCAATGGTGGTGTGTTTTTGGTTGCTGTGCTTGGTCATGCTCTTGGATTCTTCTTGTGTAGCAGTGCTATTAGGAAACCAAAACATGATGATAAGGCTTATGATCTTCCTCCCTTGTCTTGTGATTCAAAATTTGAGGTTTACCATTCTAGGAAACTCGAAATTTAA

Protein sequence

>Msa0684400

MDHGDNMHGGGMDGMNMPPKPSSSSTNNTMTMGHKMHGMMHMTFFWGKDALILFNNWPNGDTAYLVMLALMSFNGGVFLVAVLGHALGFFLCSSAIRKPKHDDKAYDLPPLSCDSKFEVYHSRKLEI*