AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0119860


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0119860 MtrunA17_Chr1g0177361 98.502 267 4 0 1 267 1 267 0.0 536
Msa0119860 MtrunA17_Chr7g0267151 86.454 251 24 3 23 267 19 265 1.25e-149 418
Msa0119860 MtrunA17_Chr4g0052651 31.111 180 114 3 76 250 6 180 1.49e-22 92.4
Msa0119860 MtrunA17_Chr4g0070091 32.867 143 87 3 90 231 87 221 1.17e-14 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0119860 AT5G06290.1 88.679 212 23 1 57 267 62 273 3.52e-140 395
Msa0119860 AT3G11630.1 91.176 204 17 1 65 267 63 266 2.74e-139 392
Msa0119860 AT5G06290.2 86.441 177 23 1 57 232 62 238 3.14e-110 318
Msa0119860 AT1G48130.1 30.682 176 117 2 76 250 6 177 7.80e-24 96.3
Msa0119860 AT3G26060.3 34.194 155 90 4 77 230 10 153 2.10e-16 74.7
Msa0119860 AT3G26060.1 33.758 157 88 5 77 230 72 215 4.19e-16 75.5
Msa0119860 AT3G26060.2 33.758 157 88 5 77 230 73 216 4.44e-16 75.5

Find 92 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCAATAAATACCGAGATTT+TGG 0.099943 1_3:-44286463 Msa0119860:CDS
AATGGTTTAGGAAGAGAATT+AGG 0.120754 1_3:+44287887 None:intergenic
AGTAGAAGAAGAGGGTAATT+TGG 0.123336 1_3:+44287919 None:intergenic
ATCAATTTGTGAGTTATAAA+AGG 0.165087 1_3:-44284867 Msa0119860:three_prime_UTR
GAGAGAAAAGTGAGGATTTA+GGG 0.212388 1_3:+44287942 None:intergenic
GGAGAGAAAAGTGAGGATTT+AGG 0.216968 1_3:+44287941 None:intergenic
AAGTAATCTTTGCTAAGTTT+TGG 0.270982 1_3:+44284939 None:intergenic
TTCACCTTTGTTTGCCCAAC+AGG 0.278982 1_3:-44286605 Msa0119860:intron
GTAGAAGAAGAGGGTAATTT+GGG 0.293541 1_3:+44287920 None:intergenic
CCAGCTGGGCAAACTTCATC+TGG 0.306036 1_3:+44284996 None:intergenic
TCCCCAGGCTTCCATCCAGC+TGG 0.323033 1_3:+44284981 None:intergenic
GAAGGGAGAGAGAATGGTTT+AGG 0.342977 1_3:+44287875 None:intergenic
GGTTTCATGGACTTCTCCCC+AGG 0.362041 1_3:+44284966 None:intergenic
CGAGAAGAATGTTGAAGATT+GGG 0.366993 1_3:+44287836 None:intergenic
ACCATCAACAACTTGGGAAT+TGG 0.377059 1_3:-44285215 Msa0119860:CDS
TGCCCAGCTGGATGGAAGCC+TGG 0.378218 1_3:-44284984 Msa0119860:CDS
ACCAATTCCCAAGTTGTTGA+TGG 0.378833 1_3:+44285214 None:intergenic
ACAGCCTCTGCTTCAAAATC+AGG 0.381358 1_3:+44286851 None:intergenic
TGGTGTTCTCATTCCTGATC+AGG 0.383066 1_3:-44285698 Msa0119860:intron
AAATCCATATCAAAATCTTA+TGG 0.385045 1_3:-44285718 Msa0119860:CDS
CCAGATGAAGTTTGCCCAGC+TGG 0.388822 1_3:-44284996 Msa0119860:CDS
GCCCAGCTGGATGGAAGCCT+GGG 0.390182 1_3:-44284983 Msa0119860:CDS
GAGGTTGAAATGAAATGGTT+TGG 0.392399 1_3:+44288055 None:intergenic
TGCAGTTCTCGCATCTTGCA+TGG 0.415230 1_3:-44285807 Msa0119860:intron
GAAAGTGAAGGGAGAGAGAA+TGG 0.422789 1_3:+44287869 None:intergenic
ATGGTTTAGGAAGAGAATTA+GGG 0.424590 1_3:+44287888 None:intergenic
GCGAGAAGAATGTTGAAGAT+TGG 0.425870 1_3:+44287835 None:intergenic
TCAATTTGTGAGTTATAAAA+GGG 0.432307 1_3:-44284866 Msa0119860:three_prime_UTR
TGGTGACTTGAATTATCCTC+TGG 0.440023 1_3:-44285755 Msa0119860:CDS
ACCTGACTAACCAACCTGTT+GGG 0.441801 1_3:+44286591 None:intergenic
GATAGAAAGTCAGGTGGCCT+TGG 0.444253 1_3:-44285775 Msa0119860:CDS
AGGTTGAAATGAAATGGTTT+GGG 0.454570 1_3:+44288056 None:intergenic
ATGTTAGGACATACCTGATC+AGG 0.457169 1_3:+44285685 None:intergenic
GCTATGAGGTTGAAATGAAA+TGG 0.463603 1_3:+44288050 None:intergenic
TGACCGACATGCAGAGTTTG+AGG 0.464552 1_3:-44286484 Msa0119860:CDS
GCACTCTACCATCAACAACT+TGG 0.474230 1_3:-44285222 Msa0119860:CDS
GATGGAGAGAGTAGAAGAAG+AGG 0.477129 1_3:+44287910 None:intergenic
CCCCAGGCTTCCATCCAGCT+GGG 0.477973 1_3:+44284982 None:intergenic
TCAAACTCTCTGACTACATT+GGG 0.480605 1_3:-44286664 Msa0119860:CDS
CAGAGTGAGCTTCCATTGGT+TGG 0.486493 1_3:-44286884 Msa0119860:CDS
TGAGAAGAGAGAAGAAGCAG+AGG 0.489447 1_3:+44287973 None:intergenic
TGTTCATTATTGACAAGGAA+GGG 0.497591 1_3:-44285253 Msa0119860:CDS
GTTCAAACAGATAGAAAGTC+AGG 0.499615 1_3:-44285784 Msa0119860:CDS
GCAGTTCTCGCATCTTGCAT+GGG 0.501742 1_3:-44285806 Msa0119860:intron
CACTGAAACACCCAAAATCT+CGG 0.516581 1_3:+44286452 None:intergenic
CTCACAGAGTGAGCTTCCAT+TGG 0.519825 1_3:-44286888 Msa0119860:intron
CTTTAACAAGGAAGCTACTA+CGG 0.520554 1_3:+44287813 None:intergenic
GCAGGCCTTGCAGTATGTGC+AGG 0.522197 1_3:-44285024 Msa0119860:intron
ATGGAGAGAGTAGAAGAAGA+GGG 0.526901 1_3:+44287911 None:intergenic
GGCGAGTGAAGGAAAGTGAA+GGG 0.527862 1_3:+44287858 None:intergenic
TTGAAGATTGGGGCGAGTGA+AGG 0.529886 1_3:+44287847 None:intergenic
AGTGGTGAAGCAAACTAAGT+TGG 0.531224 1_3:+44288101 None:intergenic
TTGTTCATTATTGACAAGGA+AGG 0.531673 1_3:-44285254 Msa0119860:CDS
TCCTAAAATTTGAAACCTCA+AGG 0.535675 1_3:-44284827 Msa0119860:three_prime_UTR
ATGAAGTTTGCCCAGCTGGA+TGG 0.536203 1_3:-44284992 Msa0119860:CDS
GTGGATGATGACGATGATGA+TGG 0.537898 1_3:+44288022 None:intergenic
GGGCGAGTGAAGGAAAGTGA+AGG 0.544606 1_3:+44287857 None:intergenic
CACTCTACCATCAACAACTT+GGG 0.546323 1_3:-44285221 Msa0119860:CDS
TTTAGGAAGAGAATTAGGGA+TGG 0.552710 1_3:+44287892 None:intergenic
GTTCATTATTGACAAGGAAG+GGG 0.557158 1_3:-44285252 Msa0119860:CDS
GGTGCTGCATTTCCAACCAA+TGG 0.558663 1_3:+44286872 None:intergenic
TGATATGGATTTGGTGACAT+CGG 0.562898 1_3:+44285729 None:intergenic
GTCAAACTCTCTGACTACAT+TGG 0.566908 1_3:-44286665 Msa0119860:CDS
CAAACAAAGGTGAAGTCCAA+TGG 0.569509 1_3:+44286614 None:intergenic
TTGCAGGGAATTGCATTGAG+AGG 0.579406 1_3:-44285278 Msa0119860:intron
GTTCTCCTGCACATACTGCA+AGG 0.582090 1_3:+44285019 None:intergenic
CAGCTGGGCAAACTTCATCT+GGG 0.584092 1_3:+44284997 None:intergenic
TGCATGTCGGTCACTGAAAG+CGG 0.585727 1_3:+44286494 None:intergenic
TGGATGATGACGATGATGAT+GGG 0.598342 1_3:+44288023 None:intergenic
GTGCAATTATTACCACCTTG+AGG 0.622215 1_3:+44284812 None:intergenic
GAGAAGAATGTTGAAGATTG+GGG 0.624972 1_3:+44287837 None:intergenic
TGCTTACAGAGGCTTTAACA+AGG 0.625945 1_3:+44287801 None:intergenic
TGAGACAAAGAGAACACTGC+AGG 0.626276 1_3:-44285180 Msa0119860:intron
CCAACCTGTTGGGCAAACAA+AGG 0.627442 1_3:+44286601 None:intergenic
TTGCCTCAAACTCTGCATGT+CGG 0.627947 1_3:+44286481 None:intergenic
AGCTGAGCATGCCATTGTGG+TGG 0.631408 1_3:+44288003 None:intergenic
CCCAGCTGGATGGAAGCCTG+GGG 0.636205 1_3:-44284982 Msa0119860:CDS
CAAATTGATACAGATGCACA+TGG 0.638628 1_3:+44284881 None:intergenic
AGGATTGTTCATTATTGACA+AGG 0.639152 1_3:-44285258 Msa0119860:CDS
AGTAGCTGAGCATGCCATTG+TGG 0.651607 1_3:+44288000 None:intergenic
TAGCAAAGATTACTTTGCCG+CGG 0.651716 1_3:-44284931 Msa0119860:CDS
TGATGATGGGAAGTGCTATG+AGG 0.662219 1_3:+44288036 None:intergenic
ATCGTCATCATCCACCACAA+TGG 0.663479 1_3:-44288014 Msa0119860:exon
TAATTTGGGAGAGAAAAGTG+AGG 0.670898 1_3:+44287934 None:intergenic
AGGTGGTAATAATTGCACAC+TGG 0.684263 1_3:-44284807 Msa0119860:three_prime_UTR
GGGTGTTTCAGTGGACAGTG+TGG 0.684461 1_3:-44286442 Msa0119860:intron
AATTGAGAAATGACAACACA+CGG 0.688512 1_3:+44288131 None:intergenic
GAGGATAATTCAAGTCACCA+AGG 0.702983 1_3:+44285758 None:intergenic
TAAAATTTGAAACCTCAAGG+TGG 0.707446 1_3:-44284824 Msa0119860:three_prime_UTR
CAAACAGATAGAAAGTCAGG+TGG 0.730426 1_3:-44285781 Msa0119860:CDS
CTGTCATTCACGTTACACCG+CGG 0.745413 1_3:+44284914 None:intergenic
TTGGTGACATCGGAAACCAG+AGG 0.770621 1_3:+44285739 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTCAAAAAAAAAAATTG+GGG + chr1_3:44285093-44285112 None:intergenic 10.0%
!! ATTTCAAAAAAAAAAATTGG+GGG + chr1_3:44285092-44285111 None:intergenic 15.0%
!! ATTGAACATTAATTGATTAT+TGG - chr1_3:44285181-44285200 Msa0119860:CDS 15.0%
!! TTGAACATTAATTGATTATT+GGG - chr1_3:44285182-44285201 Msa0119860:CDS 15.0%
!! ATCTTTAATCACTAAATATT+AGG - chr1_3:44285530-44285549 Msa0119860:intron 15.0%
!! TCTTTAATCACTAAATATTA+GGG - chr1_3:44285531-44285550 Msa0119860:intron 15.0%
!!! TTATAATTCATGCTTGTTTT+TGG - chr1_3:44285334-44285353 Msa0119860:intron 20.0%
!!! TATAATTCATGCTTGTTTTT+GGG - chr1_3:44285335-44285354 Msa0119860:intron 20.0%
!! AAGTATAGTCTTTAAATTTC+TGG - chr1_3:44285947-44285966 Msa0119860:intron 20.0%
!!! ATATGAATACTGATTCTTAA+TGG - chr1_3:44286082-44286101 Msa0119860:intron 20.0%
!!! GTTTTTGCATTTTTATTATG+TGG - chr1_3:44286112-44286131 Msa0119860:intron 20.0%
!! AAATAAATCCTTAAACGATA+TGG + chr1_3:44286622-44286641 None:intergenic 20.0%
!!! ATAAACTAGTTCTTACTATA+AGG - chr1_3:44286649-44286668 Msa0119860:CDS 20.0%
!!! ATAAGATTTTGATATGGATT+TGG + chr1_3:44287147-44287166 None:intergenic 20.0%
!! AAATCCATATCAAAATCTTA+TGG - chr1_3:44287146-44287165 Msa0119860:intron 20.0%
!!! TTACACTATTTTCATATGTT+AGG + chr1_3:44287197-44287216 None:intergenic 20.0%
!! AAAATAGTGTAACTTATGTA+TGG - chr1_3:44287205-44287224 Msa0119860:intron 20.0%
!!! AGTTTTTATTCGACTTTTTA+AGG - chr1_3:44287379-44287398 Msa0119860:intron 20.0%
!! ATCAATTTGTGAGTTATAAA+AGG - chr1_3:44287997-44288016 Msa0119860:CDS 20.0%
!! TCAATTTGTGAGTTATAAAA+GGG - chr1_3:44287998-44288017 Msa0119860:CDS 20.0%
!!! TTTGCAATTTCTTTTGATTA+TGG - chr1_3:44288121-44288140 Msa0119860:five_prime_UTR 20.0%
! TGATAATTAGATATGCTAGT+TGG - chr1_3:44285210-44285229 Msa0119860:CDS 25.0%
! TAGAATGCTTTAATGCATTT+GGG - chr1_3:44285816-44285835 Msa0119860:intron 25.0%
!!! TATTTTTGAGTAATTGCTGT+TGG - chr1_3:44286136-44286155 Msa0119860:intron 25.0%
! TAAAGATTCCATATCGTTTA+AGG - chr1_3:44286611-44286630 Msa0119860:CDS 25.0%
! TTGAATAAGAATATTGTCAG+AGG - chr1_3:44286721-44286740 Msa0119860:intron 25.0%
! TGAATAAGAATATTGTCAGA+GGG - chr1_3:44286722-44286741 Msa0119860:intron 25.0%
! GGGAATTTCTTCATAAATAA+AGG - chr1_3:44286742-44286761 Msa0119860:intron 25.0%
! ATAAAAAAAGAAACAGATGC+TGG + chr1_3:44287014-44287033 None:intergenic 25.0%
!!! AACACCATAAGATTTTGATA+TGG + chr1_3:44287153-44287172 None:intergenic 25.0%
!!! ACTTTTTAAGGAATTGAACT+AGG - chr1_3:44287391-44287410 Msa0119860:intron 25.0%
!!! CTCATATTTCAATGTTGTTT+TGG - chr1_3:44287449-44287468 Msa0119860:intron 25.0%
! AGGTGATTATACAACTAATT+AGG - chr1_3:44287704-44287723 Msa0119860:intron 25.0%
!! AGTAATCTTTGCTAAGTTTT+GGG + chr1_3:44287927-44287946 None:intergenic 25.0%
!! AAGTAATCTTTGCTAAGTTT+TGG + chr1_3:44287928-44287947 None:intergenic 25.0%
AGGTTGAAATGAAATGGTTT+GGG + chr1_3:44284811-44284830 None:intergenic 30.0%
ATGGTTTAGGAAGAGAATTA+GGG + chr1_3:44284979-44284998 None:intergenic 30.0%
AATGGTTTAGGAAGAGAATT+AGG + chr1_3:44284980-44284999 None:intergenic 30.0%
!!! TTCTAGTTCATGTGCATTTT+CGG - chr1_3:44285500-44285519 Msa0119860:intron 30.0%
CTTGGAGATATTATGGAATT+TGG + chr1_3:44285671-44285690 None:intergenic 30.0%
AAGCTATCTTGGAGATATTA+TGG + chr1_3:44285678-44285697 None:intergenic 30.0%
CTAGAATGCTTTAATGCATT+TGG - chr1_3:44285815-44285834 Msa0119860:intron 30.0%
! TTTTGATCAGGAGTTTATCA+AGG - chr1_3:44286036-44286055 Msa0119860:intron 30.0%
ATCAGTATTCATATTCGCTT+TGG + chr1_3:44286076-44286095 None:intergenic 30.0%
! TATCCTCTTTTTCTATCCAT+TGG - chr1_3:44286234-44286253 Msa0119860:intron 30.0%
! GCAATAAATACCGAGATTTT+GGG - chr1_3:44286402-44286421 Msa0119860:intron 30.0%
GAAAAATGAATCAACTGCAA+AGG - chr1_3:44286574-44286593 Msa0119860:intron 30.0%
AATCAACTGCAAAGGATTAT+AGG - chr1_3:44286582-44286601 Msa0119860:intron 30.0%
ATCAACTGCAAAGGATTATA+GGG - chr1_3:44286583-44286602 Msa0119860:intron 30.0%
TCTTTATGCTCTTATGTATG+TGG - chr1_3:44286966-44286985 Msa0119860:intron 30.0%
ATGTGGTATAACCTATGTAA+CGG - chr1_3:44286983-44287002 Msa0119860:intron 30.0%
GATACAACAGAAAATCTAGA+CGG + chr1_3:44287259-44287278 None:intergenic 30.0%
ACTCAGAAAATTCTGCAAAT+GGG + chr1_3:44287332-44287351 None:intergenic 30.0%
AACTCAGAAAATTCTGCAAA+TGG + chr1_3:44287333-44287352 None:intergenic 30.0%
ACATTGAAATATGAGCGTAA+AGG + chr1_3:44287444-44287463 None:intergenic 30.0%
CATTGCTTAATAGCATTAAC+CGG - chr1_3:44287483-44287502 Msa0119860:intron 30.0%
TAAAAATTCCCAATGTTGCA+GGG - chr1_3:44287571-44287590 Msa0119860:intron 30.0%
AGGATTGTTCATTATTGACA+AGG - chr1_3:44287606-44287625 Msa0119860:intron 30.0%
TTGTTCATTATTGACAAGGA+AGG - chr1_3:44287610-44287629 Msa0119860:intron 30.0%
TGTTCATTATTGACAAGGAA+GGG - chr1_3:44287611-44287630 Msa0119860:intron 30.0%
GATATTGTTCAATCTTGATG+TGG + chr1_3:44287731-44287750 None:intergenic 30.0%
! TCCTAAAATTTGAAACCTCA+AGG - chr1_3:44288037-44288056 Msa0119860:five_prime_UTR 30.0%
! ACCTTGAGGTTTCAAATTTT+AGG + chr1_3:44288041-44288060 None:intergenic 30.0%
! TAAAATTTGAAACCTCAAGG+TGG - chr1_3:44288040-44288059 Msa0119860:five_prime_UTR 30.0%
GTGGGGTAAGATAAAAAAAG+TGG + chr1_3:44284784-44284803 None:intergenic 35.0%
!! TGAAATGGTTTGGGTTTTGT+GGG + chr1_3:44284802-44284821 None:intergenic 35.0%
!! ATGAAATGGTTTGGGTTTTG+TGG + chr1_3:44284803-44284822 None:intergenic 35.0%
GAGGTTGAAATGAAATGGTT+TGG + chr1_3:44284812-44284831 None:intergenic 35.0%
GCTATGAGGTTGAAATGAAA+TGG + chr1_3:44284817-44284836 None:intergenic 35.0%
GAGAGAAAAGTGAGGATTTA+GGG + chr1_3:44284925-44284944 None:intergenic 35.0%
TAATTTGGGAGAGAAAAGTG+AGG + chr1_3:44284933-44284952 None:intergenic 35.0%
GTAGAAGAAGAGGGTAATTT+GGG + chr1_3:44284947-44284966 None:intergenic 35.0%
AGTAGAAGAAGAGGGTAATT+TGG + chr1_3:44284948-44284967 None:intergenic 35.0%
TTTAGGAAGAGAATTAGGGA+TGG + chr1_3:44284975-44284994 None:intergenic 35.0%
GAGAAGAATGTTGAAGATTG+GGG + chr1_3:44285030-44285049 None:intergenic 35.0%
CGAGAAGAATGTTGAAGATT+GGG + chr1_3:44285031-44285050 None:intergenic 35.0%
CTTTAACAAGGAAGCTACTA+CGG + chr1_3:44285054-44285073 None:intergenic 35.0%
TTAGCATTTGTCAGTCTGTT+TGG - chr1_3:44285425-44285444 Msa0119860:intron 35.0%
TAGCATTTGTCAGTCTGTTT+GGG - chr1_3:44285426-44285445 Msa0119860:intron 35.0%
!! TCTAGTTCATGTGCATTTTC+GGG - chr1_3:44285501-44285520 Msa0119860:intron 35.0%
CTTGCTTTCATAAGCTATCT+TGG + chr1_3:44285689-44285708 None:intergenic 35.0%
! CAAACTGTTTTCTAGACAGA+CGG + chr1_3:44285748-44285767 None:intergenic 35.0%
! TGCATTAAAGCATTCTAGCT+CGG + chr1_3:44285813-44285832 None:intergenic 35.0%
TCTCAAAAACGCAAATGAAC+TGG + chr1_3:44285896-44285915 None:intergenic 35.0%
GTATTCATATTCGCTTTGGT+TGG + chr1_3:44286072-44286091 None:intergenic 35.0%
GACTAAATCATTGTCATTCC+AGG - chr1_3:44286177-44286196 Msa0119860:intron 35.0%
TCAAACTCTCTGACTACATT+GGG - chr1_3:44286200-44286219 Msa0119860:intron 35.0%
AGTCCAATGGATAGAAAAAG+AGG + chr1_3:44286240-44286259 None:intergenic 35.0%
AAGTAGCACACATTATCGTT+AGG + chr1_3:44286336-44286355 None:intergenic 35.0%
! GGCAATAAATACCGAGATTT+TGG - chr1_3:44286401-44286420 Msa0119860:intron 35.0%
ATTGACACACAACGTTAACT+AGG + chr1_3:44286487-44286506 None:intergenic 35.0%
GTAGTCTATGTAAAGACTGT+GGG + chr1_3:44286871-44286890 None:intergenic 35.0%
TGTAGTCTATGTAAAGACTG+TGG + chr1_3:44286872-44286891 None:intergenic 35.0%
CAGTCTTTACATAGACTACA+AGG - chr1_3:44286872-44286891 Msa0119860:CDS 35.0%
ACACATACCCTTGAAAAACA+AGG - chr1_3:44286918-44286937 Msa0119860:intron 35.0%
!!! CAACAAGCCTTGTTTTTCAA+GGG + chr1_3:44286928-44286947 None:intergenic 35.0%
!!! ACAACAAGCCTTGTTTTTCA+AGG + chr1_3:44286929-44286948 None:intergenic 35.0%
!! AAAAACAAGGCTTGTTGTCT+TGG - chr1_3:44286931-44286950 Msa0119860:intron 35.0%
TTGTTGTCTTGGTATCTGAT+AGG - chr1_3:44286942-44286961 Msa0119860:intron 35.0%
GTTCAAACAGATAGAAAGTC+AGG - chr1_3:44287080-44287099 Msa0119860:intron 35.0%
!! TGATATGGATTTGGTGACAT+CGG + chr1_3:44287138-44287157 None:intergenic 35.0%
! TTTAGATGCCAACTTTTGAC+CGG + chr1_3:44287505-44287524 None:intergenic 35.0%
! TGTCTTCCATTCCACTATTT+TGG - chr1_3:44287529-44287548 Msa0119860:intron 35.0%
! ACAAGTCCAAAATAGTGGAA+TGG + chr1_3:44287538-44287557 None:intergenic 35.0%
ATGACACAAGTCCAAAATAG+TGG + chr1_3:44287543-44287562 None:intergenic 35.0%
! CTGCAACATTGGGAATTTTT+AGG + chr1_3:44287572-44287591 None:intergenic 35.0%
CTAAAAATTCCCAATGTTGC+AGG - chr1_3:44287570-44287589 Msa0119860:intron 35.0%
GTTCATTATTGACAAGGAAG+GGG - chr1_3:44287612-44287631 Msa0119860:intron 35.0%
CAAATTGATACAGATGCACA+TGG + chr1_3:44287986-44288005 None:intergenic 35.0%
AGTGGTGAAGCAAACTAAGT+TGG + chr1_3:44284766-44284785 None:intergenic 40.0%
!! GAAATGGTTTGGGTTTTGTG+GGG + chr1_3:44284801-44284820 None:intergenic 40.0%
! TGGATGATGACGATGATGAT+GGG + chr1_3:44284844-44284863 None:intergenic 40.0%
GGAGAGAAAAGTGAGGATTT+AGG + chr1_3:44284926-44284945 None:intergenic 40.0%
ATGGAGAGAGTAGAAGAAGA+GGG + chr1_3:44284956-44284975 None:intergenic 40.0%
GCGAGAAGAATGTTGAAGAT+TGG + chr1_3:44285032-44285051 None:intergenic 40.0%
! TGCTTACAGAGGCTTTAACA+AGG + chr1_3:44285066-44285085 None:intergenic 40.0%
AGCATTTGTCAGTCTGTTTG+GGG - chr1_3:44285427-44285446 Msa0119860:intron 40.0%
TTTGTGAGTGTGTTTGAGAG+AGG - chr1_3:44285597-44285616 Msa0119860:intron 40.0%
TTCATATTCGCTTTGGTTGG+TGG + chr1_3:44286069-44286088 None:intergenic 40.0%
GTCAAACTCTCTGACTACAT+TGG - chr1_3:44286199-44286218 Msa0119860:intron 40.0%
CAAACAAAGGTGAAGTCCAA+TGG + chr1_3:44286253-44286272 None:intergenic 40.0%
CACTGAAACACCCAAAATCT+CGG + chr1_3:44286415-44286434 None:intergenic 40.0%
CTAACTAATAGACAGACAGC+AGG + chr1_3:44286551-44286570 None:intergenic 40.0%
TATGTAAAGACTGTGGGCAT+TGG + chr1_3:44286865-44286884 None:intergenic 40.0%
TGCTGGAATTTCCGTTACAT+AGG + chr1_3:44286997-44287016 None:intergenic 40.0%
GAACTGCACGATAGAAACAA+TGG + chr1_3:44287045-44287064 None:intergenic 40.0%
CAAACAGATAGAAAGTCAGG+TGG - chr1_3:44287083-44287102 Msa0119860:intron 40.0%
GAGGATAATTCAAGTCACCA+AGG + chr1_3:44287109-44287128 None:intergenic 40.0%
TGGTGACTTGAATTATCCTC+TGG - chr1_3:44287109-44287128 Msa0119860:intron 40.0%
ATGTTAGGACATACCTGATC+AGG + chr1_3:44287182-44287201 None:intergenic 40.0%
ATCTCTCCCTAAACGAACTT+AGG - chr1_3:44287279-44287298 Msa0119860:intron 40.0%
TCTCTCCCTAAACGAACTTA+GGG - chr1_3:44287280-44287299 Msa0119860:intron 40.0%
GCATACCCTAAGTTCGTTTA+GGG + chr1_3:44287288-44287307 None:intergenic 40.0%
CTTAGGGTATGCCATATCTA+CGG - chr1_3:44287296-44287315 Msa0119860:intron 40.0%
TTAGGGTATGCCATATCTAC+GGG - chr1_3:44287297-44287316 Msa0119860:intron 40.0%
AGCATTAACCGGTCAAAAGT+TGG - chr1_3:44287494-44287513 Msa0119860:intron 40.0%
ATGCAATTCCCTGCAACATT+GGG + chr1_3:44287582-44287601 None:intergenic 40.0%
AATGCAATTCCCTGCAACAT+TGG + chr1_3:44287583-44287602 None:intergenic 40.0%
CACTCTACCATCAACAACTT+GGG - chr1_3:44287643-44287662 Msa0119860:intron 40.0%
ACCATCAACAACTTGGGAAT+TGG - chr1_3:44287649-44287668 Msa0119860:intron 40.0%
ACCAATTCCCAAGTTGTTGA+TGG + chr1_3:44287653-44287672 None:intergenic 40.0%
!!! AAGTTTTGGGTCTGGTTTCA+TGG + chr1_3:44287914-44287933 None:intergenic 40.0%
!!! TCTTTGCTAAGTTTTGGGTC+TGG + chr1_3:44287922-44287941 None:intergenic 40.0%
TAGCAAAGATTACTTTGCCG+CGG - chr1_3:44287933-44287952 Msa0119860:CDS 40.0%
GTGCAATTATTACCACCTTG+AGG + chr1_3:44288055-44288074 None:intergenic 40.0%
AGGTGGTAATAATTGCACAC+TGG - chr1_3:44288057-44288076 Msa0119860:five_prime_UTR 40.0%
!! TGATGATGGGAAGTGCTATG+AGG + chr1_3:44284831-44284850 None:intergenic 45.0%
! GTGGATGATGACGATGATGA+TGG + chr1_3:44284845-44284864 None:intergenic 45.0%
ATCGTCATCATCCACCACAA+TGG - chr1_3:44284850-44284869 Msa0119860:three_prime_UTR 45.0%
TGAGAAGAGAGAAGAAGCAG+AGG + chr1_3:44284894-44284913 None:intergenic 45.0%
GATGGAGAGAGTAGAAGAAG+AGG + chr1_3:44284957-44284976 None:intergenic 45.0%
GAAGGGAGAGAGAATGGTTT+AGG + chr1_3:44284992-44285011 None:intergenic 45.0%
GAAAGTGAAGGGAGAGAGAA+TGG + chr1_3:44284998-44285017 None:intergenic 45.0%
ATTGGGGGAAATGCTTACAG+AGG + chr1_3:44285077-44285096 None:intergenic 45.0%
GCATTTGTCAGTCTGTTTGG+GGG - chr1_3:44285428-44285447 Msa0119860:intron 45.0%
CTCGGAGCAAGGACATAATT+TGG + chr1_3:44285795-44285814 None:intergenic 45.0%
!!! AGCACCTGATTTTGAAGCAG+AGG - chr1_3:44286009-44286028 Msa0119860:intron 45.0%
ACAGCCTCTGCTTCAAAATC+AGG + chr1_3:44286016-44286035 None:intergenic 45.0%
!!! AGCAGAGGCTGTTTTTGATC+AGG - chr1_3:44286024-44286043 Msa0119860:intron 45.0%
CAGGAGTTTATCAAGGTACG+TGG - chr1_3:44286043-44286062 Msa0119860:intron 45.0%
TGTAGTCAGAGAGTTTGACC+TGG + chr1_3:44286198-44286217 None:intergenic 45.0%
! TTCACCTTTGTTTGCCCAAC+AGG - chr1_3:44286259-44286278 Msa0119860:intron 45.0%
ACCTGACTAACCAACCTGTT+GGG + chr1_3:44286276-44286295 None:intergenic 45.0%
TTGCCTCAAACTCTGCATGT+CGG + chr1_3:44286386-44286405 None:intergenic 45.0%
!! CGAGATTTTGGGTGTTTCAG+TGG - chr1_3:44286413-44286432 Msa0119860:intron 45.0%
TGGTGTTCTCATTCCTGATC+AGG - chr1_3:44287166-44287185 Msa0119860:intron 45.0%
GGCATACCCTAAGTTCGTTT+AGG + chr1_3:44287289-44287308 None:intergenic 45.0%
TAGGGTATGCCATATCTACG+GGG - chr1_3:44287298-44287317 Msa0119860:intron 45.0%
GAGCGTAAAGGACAAGTGTT+GGG + chr1_3:44287432-44287451 None:intergenic 45.0%
TGAGCGTAAAGGACAAGTGT+TGG + chr1_3:44287433-44287452 None:intergenic 45.0%
TTGCAGGGAATTGCATTGAG+AGG - chr1_3:44287586-44287605 Msa0119860:intron 45.0%
GCACTCTACCATCAACAACT+TGG - chr1_3:44287642-44287661 Msa0119860:intron 45.0%
TGAGACAAAGAGAACACTGC+AGG - chr1_3:44287684-44287703 Msa0119860:intron 45.0%
ATTGTCCCCTTGATCTGCAT+TGG - chr1_3:44287813-44287832 Msa0119860:CDS 45.0%
CAAGACCAATGCAGATCAAG+GGG + chr1_3:44287821-44287840 None:intergenic 45.0%
GCAAGACCAATGCAGATCAA+GGG + chr1_3:44287822-44287841 None:intergenic 45.0%
TGCAAGACCAATGCAGATCA+AGG + chr1_3:44287823-44287842 None:intergenic 45.0%
!! TTGATCTGCATTGGTCTTGC+AGG - chr1_3:44287822-44287841 Msa0119860:CDS 45.0%
!! AAATTTCAAAAAAAAAAATT+GGG + chr1_3:44285094-44285113 None:intergenic 5.0%
!! AAAATTTCAAAAAAAAAAAT+TGG + chr1_3:44285095-44285114 None:intergenic 5.0%
AGTAGCTGAGCATGCCATTG+TGG + chr1_3:44284867-44284886 None:intergenic 50.0%
GGCGAGTGAAGGAAAGTGAA+GGG + chr1_3:44285009-44285028 None:intergenic 50.0%
TTGAAGATTGGGGCGAGTGA+AGG + chr1_3:44285020-44285039 None:intergenic 50.0%
!! AAGCATTCTAGCTCGGAGCA+AGG + chr1_3:44285806-44285825 None:intergenic 50.0%
CAATGGAAGCTCACTCTGTG+AGG + chr1_3:44285978-44285997 None:intergenic 50.0%
CTCACAGAGTGAGCTTCCAT+TGG - chr1_3:44285976-44285995 Msa0119860:intron 50.0%
CAGAGTGAGCTTCCATTGGT+TGG - chr1_3:44285980-44285999 Msa0119860:intron 50.0%
! GGTGCTGCATTTCCAACCAA+TGG + chr1_3:44285995-44286014 None:intergenic 50.0%
CCAACCTGTTGGGCAAACAA+AGG + chr1_3:44286266-44286285 None:intergenic 50.0%
! CCTTTGTTTGCCCAACAGGT+TGG - chr1_3:44286263-44286282 Msa0119860:intron 50.0%
GACCTGACTAACCAACCTGT+TGG + chr1_3:44286277-44286296 None:intergenic 50.0%
TGCATGTCGGTCACTGAAAG+CGG + chr1_3:44286373-44286392 None:intergenic 50.0%
TGACCGACATGCAGAGTTTG+AGG - chr1_3:44286380-44286399 Msa0119860:intron 50.0%
TGCAGTTCTCGCATCTTGCA+TGG - chr1_3:44287057-44287076 Msa0119860:intron 50.0%
GCAGTTCTCGCATCTTGCAT+GGG - chr1_3:44287058-44287077 Msa0119860:intron 50.0%
GATAGAAAGTCAGGTGGCCT+TGG - chr1_3:44287089-44287108 Msa0119860:intron 50.0%
! TTGGTGACATCGGAAACCAG+AGG + chr1_3:44287128-44287147 None:intergenic 50.0%
GTATGCCATATCTACGGGGA+AGG - chr1_3:44287302-44287321 Msa0119860:intron 50.0%
GTTCTCCTGCACATACTGCA+AGG + chr1_3:44287848-44287867 None:intergenic 50.0%
CAGCTGGGCAAACTTCATCT+GGG + chr1_3:44287870-44287889 None:intergenic 50.0%
ATGAAGTTTGCCCAGCTGGA+TGG - chr1_3:44287872-44287891 Msa0119860:CDS 50.0%
CTGTCATTCACGTTACACCG+CGG + chr1_3:44287953-44287972 None:intergenic 50.0%
AGCTGAGCATGCCATTGTGG+TGG + chr1_3:44284864-44284883 None:intergenic 55.0%
GGGCGAGTGAAGGAAAGTGA+AGG + chr1_3:44285010-44285029 None:intergenic 55.0%
!! GCCCAACAGGTTGGTTAGTC+AGG - chr1_3:44286272-44286291 Msa0119860:intron 55.0%
GGGTGTTTCAGTGGACAGTG+TGG - chr1_3:44286422-44286441 Msa0119860:intron 55.0%
CAGTGGACAGTGTGGTACGT+TGG - chr1_3:44286430-44286449 Msa0119860:intron 55.0%
GAGAGCCTTCCCCGTAGATA+TGG + chr1_3:44287310-44287329 None:intergenic 55.0%
CCAGCTGGGCAAACTTCATC+TGG + chr1_3:44287871-44287890 None:intergenic 55.0%
CCAGATGAAGTTTGCCCAGC+TGG - chr1_3:44287868-44287887 Msa0119860:CDS 55.0%
GGTTTCATGGACTTCTCCCC+AGG + chr1_3:44287901-44287920 None:intergenic 55.0%
GCAGGCCTTGCAGTATGTGC+AGG - chr1_3:44287840-44287859 Msa0119860:CDS 60.0%
TGCCCAGCTGGATGGAAGCC+TGG - chr1_3:44287880-44287899 Msa0119860:CDS 65.0%
GCCCAGCTGGATGGAAGCCT+GGG - chr1_3:44287881-44287900 Msa0119860:CDS 65.0%
CCCCAGGCTTCCATCCAGCT+GGG + chr1_3:44287885-44287904 None:intergenic 65.0%
CCCAGCTGGATGGAAGCCTG+GGG - chr1_3:44287882-44287901 Msa0119860:CDS 65.0%
TCCCCAGGCTTCCATCCAGC+TGG + chr1_3:44287886-44287905 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 44284736 44288150 44284736 ID=Msa0119860;Name=Msa0119860
chr1_3 mRNA 44284736 44288150 44284736 ID=Msa0119860-mRNA-1;Parent=Msa0119860;Name=Msa0119860-mRNA-1;_AED=0.12;_eAED=0.12;_QI=133|1|1|1|1|1|7|190|267
chr1_3 exon 44284736 44285042 44284736 ID=Msa0119860-mRNA-1:exon:13209;Parent=Msa0119860-mRNA-1
chr1_3 exon 44285181 44285294 44285181 ID=Msa0119860-mRNA-1:exon:13208;Parent=Msa0119860-mRNA-1
chr1_3 exon 44285699 44285824 44285699 ID=Msa0119860-mRNA-1:exon:13207;Parent=Msa0119860-mRNA-1
chr1_3 exon 44286443 44286522 44286443 ID=Msa0119860-mRNA-1:exon:13206;Parent=Msa0119860-mRNA-1
chr1_3 exon 44286606 44286687 44286606 ID=Msa0119860-mRNA-1:exon:13205;Parent=Msa0119860-mRNA-1
chr1_3 exon 44286829 44286903 44286829 ID=Msa0119860-mRNA-1:exon:13204;Parent=Msa0119860-mRNA-1
chr1_3 exon 44287808 44288150 44287808 ID=Msa0119860-mRNA-1:exon:13203;Parent=Msa0119860-mRNA-1
chr1_3 five_prime_UTR 44288018 44288150 44288018 ID=Msa0119860-mRNA-1:five_prime_utr;Parent=Msa0119860-mRNA-1
chr1_3 CDS 44287808 44288017 44287808 ID=Msa0119860-mRNA-1:cds;Parent=Msa0119860-mRNA-1
chr1_3 CDS 44286829 44286903 44286829 ID=Msa0119860-mRNA-1:cds;Parent=Msa0119860-mRNA-1
chr1_3 CDS 44286606 44286687 44286606 ID=Msa0119860-mRNA-1:cds;Parent=Msa0119860-mRNA-1
chr1_3 CDS 44286443 44286522 44286443 ID=Msa0119860-mRNA-1:cds;Parent=Msa0119860-mRNA-1
chr1_3 CDS 44285699 44285824 44285699 ID=Msa0119860-mRNA-1:cds;Parent=Msa0119860-mRNA-1
chr1_3 CDS 44285181 44285294 44285181 ID=Msa0119860-mRNA-1:cds;Parent=Msa0119860-mRNA-1
chr1_3 CDS 44284926 44285042 44284926 ID=Msa0119860-mRNA-1:cds;Parent=Msa0119860-mRNA-1
chr1_3 three_prime_UTR 44284736 44284925 44284736 ID=Msa0119860-mRNA-1:three_prime_utr;Parent=Msa0119860-mRNA-1
Gene Sequence

>Msa0119860

ATGGCATGCTCAGCTACTACTACCTCTGCTTCTTCTCTCTTCTCATCTCTAAACCCTAAATCCTCACTTTTCTCTCCCAAATTACCCTCTTCTTCTACTCTCTCCATCCCTAATTCTCTTCCTAAACCATTCTCTCTCCCTTCACTTTCCTTCACTCGCCCCAATCTTCAACATTCTTCTCGCCGTAGTAGCTTCCTTGTTAAAGCCTCTAGTGAGCTTCCATTGGTTGGAAATGCAGCACCTGATTTTGAAGCAGAGGCTGTTTTTGATCAGGAGTTTATCAAGGTCAAACTCTCTGACTACATTGGGAAGAAGTATGTTATCCTCTTTTTCTATCCATTGGACTTCACCTTTGTTTGCCCAACAGAAATCACCGCTTTCAGTGACCGACATGCAGAGTTTGAGGCAATAAATACCGAGATTTTGGGTGTTTCAGTGGACAGTGTGTTCTCGCATCTTGCATGGGTTCAAACAGATAGAAAGTCAGGTGGCCTTGGTGACTTGAATTATCCTCTGGTTTCCGATGTCACCAAATCCATATCAAAATCTTATGGTGTTCTCATTCCTGATCAGGGAATTGCATTGAGAGGATTGTTCATTATTGACAAGGAAGGGGTTATTCAGCACTCTACCATCAACAACTTGGGAATTGGTAGAAGTGTTGATGAGACAAAGAGAACACTGCAGGCCTTGCAGTATGTGCAGGAGAACCCAGATGAAGTTTGCCCAGCTGGATGGAAGCCTGGGGAGAAGTCCATGAAACCAGACCCAAAACTTAGCAAAGATTACTTTGCCGCGGTGTAA

Protein sequence

>Msa0119860

MACSATTTSASSLFSSLNPKSSLFSPKLPSSSTLSIPNSLPKPFSLPSLSFTRPNLQHSSRRSSFLVKASSELPLVGNAAPDFEAEAVFDQEFIKVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRHAEFEAINTEILGVSVDSVFSHLAWVQTDRKSGGLGDLNYPLVSDVTKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLGIGRSVDETKRTLQALQYVQENPDEVCPAGWKPGEKSMKPDPKLSKDYFAAV*