AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0471480


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0471480 MtrunA17_Chr3g0126171 80.321 249 5 2 1 205 1 249 7.12e-141 393
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0471480 AT1G21350.5 77.604 192 41 2 15 205 71 261 1.96e-107 309
Msa0471480 AT1G21350.3 77.604 192 41 2 15 205 58 248 2.68e-107 308
Msa0471480 AT1G21350.4 86.486 148 19 1 58 205 1 147 5.17e-93 268
Msa0471480 AT1G21350.1 86.486 148 19 1 58 205 1 147 5.17e-93 268
Msa0471480 AT1G21350.2 65.104 192 38 3 15 205 58 221 9.90e-82 243

Find 55 sgRNAs with CRISPR-Local

Find 492 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGGATGTTGCACGGGATTT+TGG 0.149216 3_3:-73801390 Msa0471480:CDS
TGTTGTAACTTGTTATAATA+AGG 0.217561 3_3:-73800554 Msa0471480:three_prime_UTR
TTAGGTTCTACTGCCTCTTC+TGG 0.240913 3_3:-73804508 Msa0471480:CDS
GCATCTTCTGCCATCAATTC+TGG 0.244162 3_3:+73802666 None:intergenic
CTTCATTCACTTGCTTCATC+AGG 0.333547 3_3:+73800483 None:intergenic
AATAATAACATACCAGTAAC+TGG 0.338409 3_3:-73801157 Msa0471480:CDS
ACAGGTCAAAATTTCTTTCA+TGG 0.345462 3_3:+73800848 None:intergenic
TGGTCACCATTTGTTCAGTT+AGG 0.362138 3_3:-73804526 Msa0471480:CDS
TGAGGCTCATCCAGCTCTAT+TGG 0.371238 3_3:-73804072 Msa0471480:intron
GAAACAAACCTTCCAGTTAC+TGG 0.385727 3_3:+73801145 None:intergenic
ACCATGCTCTGTTTCCAAAC+CGG 0.385862 3_3:-73804470 Msa0471480:CDS
TTTGAGATGAAAACCCGGTT+TGG 0.412243 3_3:+73804456 None:intergenic
CCATGCTCTGTTTCCAAACC+GGG 0.417898 3_3:-73804469 Msa0471480:intron
GCAGAAGATGCTAAATTGTC+TGG 0.420368 3_3:-73802654 Msa0471480:CDS
GCCTAAGAGTGACTTCTGTT+TGG 0.433647 3_3:-73804546 Msa0471480:CDS
AGCCTCTGACTGGAAAGGTT+TGG 0.435430 3_3:-73804109 Msa0471480:CDS
ACTGGTATGTTATTATTACT+TGG 0.444749 3_3:+73801163 None:intergenic
CAGGTCAAAATTTCTTTCAT+GGG 0.452382 3_3:+73800849 None:intergenic
ACCAAACAGAAGTCACTCTT+AGG 0.454409 3_3:+73804545 None:intergenic
ACATACAAGAAACAAAGAAC+AGG 0.456238 3_3:+73800574 None:intergenic
GTAGAACCTAACTGAACAAA+TGG 0.460254 3_3:+73804520 None:intergenic
GACTGGAAAGGTTTGGACAT+TGG 0.462065 3_3:-73804102 Msa0471480:CDS
TGAATCATACCTCATCATAT+AGG 0.463182 3_3:+73802616 None:intergenic
ACGGTCAGTTTGATGATTCA+AGG 0.467280 3_3:-73801186 Msa0471480:CDS
TAGTGTGATTTGAAAAGAAA+TGG 0.467902 3_3:-73800711 Msa0471480:three_prime_UTR
TGGTCGAAGGCCGTTTGAGC+TGG 0.473440 3_3:-73801215 Msa0471480:CDS
ACAGGATGGACCAGAATTGA+TGG 0.497097 3_3:-73802676 Msa0471480:intron
ATGGAAAGAAAAGAACAAAC+AGG 0.497195 3_3:+73800737 None:intergenic
CAGAATCCTACCAATAGAGC+TGG 0.507380 3_3:+73804062 None:intergenic
TAGCTTTCAGAGCCTCTGAC+TGG 0.510935 3_3:-73804119 Msa0471480:intron
GCGAGATAATTACAATGTAC+AGG 0.518182 3_3:+73800830 None:intergenic
AGAAAGCATTTAATCAGAAG+AGG 0.522353 3_3:-73800607 Msa0471480:three_prime_UTR
CCGTGGTAAACCAGCTCAAA+CGG 0.528066 3_3:+73801205 None:intergenic
CATACCTCATCATATAGGTA+TGG 0.528343 3_3:+73802621 None:intergenic
TCATCATATAGGTATGGAAA+AGG 0.530498 3_3:+73802627 None:intergenic
GCTTACTGAATTCTATATGA+AGG 0.535787 3_3:-73802937 Msa0471480:intron
TTTGCTCTGATGGTACCGGC+TGG 0.552310 3_3:+73800999 None:intergenic
TGCAGTCACAGGATGTTGCA+CGG 0.554754 3_3:-73801398 Msa0471480:intron
TTCAGAGCCTCTGACTGGAA+AGG 0.559382 3_3:-73804114 Msa0471480:intron
TTTCAAAAGAGACTTGAGCT+TGG 0.561188 3_3:-73801044 Msa0471480:intron
GCAGTCACAGGATGTTGCAC+GGG 0.565333 3_3:-73801397 Msa0471480:intron
TCGTGTTCTGAGTGGCCAGC+CGG 0.569048 3_3:-73801014 Msa0471480:CDS
GTCCAAACCTTTCCAGTCAG+AGG 0.582049 3_3:+73804107 None:intergenic
AATAATAACAGGATGGTCGA+AGG 0.587773 3_3:-73801228 Msa0471480:intron
CATACAAGAAACAAAGAACA+GGG 0.590365 3_3:+73800575 None:intergenic
CCCGGTTTGGAAACAGAGCA+TGG 0.597843 3_3:+73804469 None:intergenic
TAATGACATGACATATTCAG+TGG 0.610052 3_3:+73800667 None:intergenic
AGAGAGTGAGAATCCAGAAG+AGG 0.628830 3_3:+73804495 None:intergenic
CCGTTTGAGCTGGTTTACCA+CGG 0.632650 3_3:-73801205 Msa0471480:CDS
GTGTTGGATGCAGCATAAAG+TGG 0.640512 3_3:-73800874 Msa0471480:CDS
ATAACATACCAGTAACTGGA+AGG 0.643706 3_3:-73801153 Msa0471480:intron
GCAATAGATCGTGTTCTGAG+TGG 0.662500 3_3:-73801022 Msa0471480:CDS
TTGAATCATCAAACTGACCG+TGG 0.684690 3_3:+73801188 None:intergenic
GGTGTATAACAAATGGACAG+TGG 0.705672 3_3:+73802979 None:intergenic
ATACAAGAAACAAAGAACAG+GGG 0.717494 3_3:+73800576 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAACAAAATAAAAATAAAA+AGG + chr3_3:73800854-73800873 None:intergenic 10.0%
!!! TTATTTTGTTCTTTTAAATA+TGG - chr3_3:73800862-73800881 Msa0471480:exon 10.0%
!!! TATTTTGTTCTTTTAAATAT+GGG - chr3_3:73800863-73800882 Msa0471480:exon 10.0%
!! AAATTCATTAAAAAAAACTT+TGG - chr3_3:73801565-73801584 Msa0471480:intron 10.0%
!! GACAAAAATAATAATTAAAT+GGG + chr3_3:73802214-73802233 None:intergenic 10.0%
!! AGACAAAAATAATAATTAAA+TGG + chr3_3:73802215-73802234 None:intergenic 10.0%
!!! AAATAATTTGTTTCTTTTTT+TGG - chr3_3:73802977-73802996 Msa0471480:CDS 10.0%
!!! GTTTTATTATATTATATTAC+TGG + chr3_3:73803604-73803623 None:intergenic 10.0%
!! TTAATTAATCAAATAATAAC+AGG - chr3_3:73803810-73803829 Msa0471480:intron 10.0%
!! AGAACAAAATAAAAATAAAA+AGG + chr3_3:73800854-73800873 None:intergenic 10.0%
!!! TTATTTTGTTCTTTTAAATA+TGG - chr3_3:73800862-73800881 Msa0471480:exon 10.0%
!!! TATTTTGTTCTTTTAAATAT+GGG - chr3_3:73800863-73800882 Msa0471480:exon 10.0%
!! AAATTCATTAAAAAAAACTT+TGG - chr3_3:73801565-73801584 Msa0471480:intron 10.0%
!! GACAAAAATAATAATTAAAT+GGG + chr3_3:73802214-73802233 None:intergenic 10.0%
!! AGACAAAAATAATAATTAAA+TGG + chr3_3:73802215-73802234 None:intergenic 10.0%
!!! AAATAATTTGTTTCTTTTTT+TGG - chr3_3:73802977-73802996 Msa0471480:CDS 10.0%
!!! GTTTTATTATATTATATTAC+TGG + chr3_3:73803604-73803623 None:intergenic 10.0%
!! TTAATTAATCAAATAATAAC+AGG - chr3_3:73803810-73803829 Msa0471480:intron 10.0%
!! GTAACATATTATAAAGAAAA+GGG - chr3_3:73802879-73802898 Msa0471480:intron 15.0%
!! TCATAAATTTATTTATACTG+TGG - chr3_3:73803311-73803330 Msa0471480:intron 15.0%
!! ATGTTTATATAATTTGGAAA+AGG + chr3_3:73803450-73803469 None:intergenic 15.0%
!!! TTTTTAAAAAGGTAAAATTC+TGG + chr3_3:73803698-73803717 None:intergenic 15.0%
!!! AGAATTTTACCTTTTTAAAA+AGG - chr3_3:73803697-73803716 Msa0471480:intron 15.0%
!!! TTGTAAATACCTTTTTAAAA+AGG + chr3_3:73803709-73803728 None:intergenic 15.0%
!!! AATAAGTTTTAATTTCCAAA+AGG + chr3_3:73804535-73804554 None:intergenic 15.0%
!!! TTAAAACTTATTTTCATACA+TGG - chr3_3:73804543-73804562 Msa0471480:CDS 15.0%
!! GTAACATATTATAAAGAAAA+GGG - chr3_3:73802879-73802898 Msa0471480:intron 15.0%
!! TCATAAATTTATTTATACTG+TGG - chr3_3:73803311-73803330 Msa0471480:intron 15.0%
!! ATGTTTATATAATTTGGAAA+AGG + chr3_3:73803450-73803469 None:intergenic 15.0%
!!! TTTTTAAAAAGGTAAAATTC+TGG + chr3_3:73803698-73803717 None:intergenic 15.0%
!!! AGAATTTTACCTTTTTAAAA+AGG - chr3_3:73803697-73803716 Msa0471480:intron 15.0%
!!! TTGTAAATACCTTTTTAAAA+AGG + chr3_3:73803709-73803728 None:intergenic 15.0%
!!! AATAAGTTTTAATTTCCAAA+AGG + chr3_3:73804535-73804554 None:intergenic 15.0%
!!! TTAAAACTTATTTTCATACA+TGG - chr3_3:73804543-73804562 Msa0471480:CDS 15.0%
!!! GTTACATTTGAATTTTTGTT+TGG - chr3_3:73800890-73800909 Msa0471480:intron 20.0%
!!! TTGTTTTCATAAGCTATATA+CGG - chr3_3:73801227-73801246 Msa0471480:intron 20.0%
!! TTTATGCATCATAATTCATA+AGG + chr3_3:73801898-73801917 None:intergenic 20.0%
!! TGTCTTTATTATATATAACC+TGG - chr3_3:73802541-73802560 Msa0471480:intron 20.0%
!! GGTAACATATTATAAAGAAA+AGG - chr3_3:73802878-73802897 Msa0471480:intron 20.0%
!!! AATTTGTTTCTTTTTTTGGT+AGG - chr3_3:73802981-73803000 Msa0471480:CDS 20.0%
!! GAGTAACAAATTTGTATAAA+GGG + chr3_3:73803237-73803256 None:intergenic 20.0%
!! AGAGTAACAAATTTGTATAA+AGG + chr3_3:73803238-73803257 None:intergenic 20.0%
!! TTAATCAAATAATAACAGGA+TGG - chr3_3:73803814-73803833 Msa0471480:intron 20.0%
!!! AATTAAATGTAAAAGTACCT+AGG + chr3_3:73804078-73804097 None:intergenic 20.0%
!!! AATTTTCTCAAACAATCAAA+AGG + chr3_3:73804103-73804122 None:intergenic 20.0%
!! TTTGAGAAAATTTCAGTTTA+TGG - chr3_3:73804111-73804130 Msa0471480:CDS 20.0%
!!! GTTTTATAGGTTAATGATTA+AGG - chr3_3:73804406-73804425 Msa0471480:intron 20.0%
!!! TGTTGTAACTTGTTATAATA+AGG - chr3_3:73804495-73804514 Msa0471480:CDS 20.0%
!!! GTTACATTTGAATTTTTGTT+TGG - chr3_3:73800890-73800909 Msa0471480:intron 20.0%
!!! TTGTTTTCATAAGCTATATA+CGG - chr3_3:73801227-73801246 Msa0471480:intron 20.0%
!! TTTATGCATCATAATTCATA+AGG + chr3_3:73801898-73801917 None:intergenic 20.0%
!! TGTCTTTATTATATATAACC+TGG - chr3_3:73802541-73802560 Msa0471480:intron 20.0%
!! GGTAACATATTATAAAGAAA+AGG - chr3_3:73802878-73802897 Msa0471480:intron 20.0%
!!! AATTTGTTTCTTTTTTTGGT+AGG - chr3_3:73802981-73803000 Msa0471480:CDS 20.0%
!! GAGTAACAAATTTGTATAAA+GGG + chr3_3:73803237-73803256 None:intergenic 20.0%
!! AGAGTAACAAATTTGTATAA+AGG + chr3_3:73803238-73803257 None:intergenic 20.0%
!! TTAATCAAATAATAACAGGA+TGG - chr3_3:73803814-73803833 Msa0471480:intron 20.0%
!!! AATTAAATGTAAAAGTACCT+AGG + chr3_3:73804078-73804097 None:intergenic 20.0%
!!! AATTTTCTCAAACAATCAAA+AGG + chr3_3:73804103-73804122 None:intergenic 20.0%
!! TTTGAGAAAATTTCAGTTTA+TGG - chr3_3:73804111-73804130 Msa0471480:CDS 20.0%
!!! GTTTTATAGGTTAATGATTA+AGG - chr3_3:73804406-73804425 Msa0471480:intron 20.0%
!!! TGTTGTAACTTGTTATAATA+AGG - chr3_3:73804495-73804514 Msa0471480:CDS 20.0%
! CATGTGATTACATTTAACTA+TGG + chr3_3:73800796-73800815 None:intergenic 25.0%
! TTAAATGTAATCACATGTGT+CGG - chr3_3:73800799-73800818 Msa0471480:three_prime_UTR 25.0%
!!! CATTTGAATTTTTGTTTGGA+TGG - chr3_3:73800894-73800913 Msa0471480:intron 25.0%
! TATGTTTCTTGTTCTATGTT+AGG - chr3_3:73801053-73801072 Msa0471480:intron 25.0%
!! TGTTTTCATAAGCTATATAC+GGG - chr3_3:73801228-73801247 Msa0471480:intron 25.0%
! AGAGAAACAAACTACAATAA+CGG + chr3_3:73801273-73801292 None:intergenic 25.0%
!!! TATTGTAGTTTGTTTCTCTT+AGG - chr3_3:73801274-73801293 Msa0471480:intron 25.0%
! TCAAATAAGCCAATTCAAAT+AGG - chr3_3:73801469-73801488 Msa0471480:intron 25.0%
! ATATGAACTCATTCTTACTA+GGG + chr3_3:73801495-73801514 None:intergenic 25.0%
! AAGAATGAGTTCATATGAAA+TGG - chr3_3:73801499-73801518 Msa0471480:intron 25.0%
! AGAATGAGTTCATATGAAAT+GGG - chr3_3:73801500-73801519 Msa0471480:intron 25.0%
!! AGAATAAAGCATGAGTATTT+TGG - chr3_3:73801917-73801936 Msa0471480:intron 25.0%
!!! CTTTTGTTGCTTATATTTTG+TGG - chr3_3:73801960-73801979 Msa0471480:intron 25.0%
!!! TTTTTCAGGTGTATAACAAA+TGG + chr3_3:73802080-73802099 None:intergenic 25.0%
!! ATTTTTGTCTTTCTACAGAA+AGG - chr3_3:73802225-73802244 Msa0471480:intron 25.0%
! AAATGAATTTACTATCACCT+GGG + chr3_3:73802295-73802314 None:intergenic 25.0%
! GAATTGTGAATACTTAAAAC+AGG + chr3_3:73802470-73802489 None:intergenic 25.0%
! TTAAGTATTCACAATTCACA+TGG - chr3_3:73802473-73802492 Msa0471480:intron 25.0%
! GATAAAAAATAATGTTTGCC+AGG + chr3_3:73802562-73802581 None:intergenic 25.0%
!! GTATAGATCACATATTTTCT+TGG + chr3_3:73802824-73802843 None:intergenic 25.0%
!! GCAAAGAAGCTAATTATTTT+GGG + chr3_3:73803021-73803040 None:intergenic 25.0%
!! AGCAAAGAAGCTAATTATTT+TGG + chr3_3:73803022-73803041 None:intergenic 25.0%
! TATTTGAACTCAACACTTAA+AGG - chr3_3:73803081-73803100 Msa0471480:intron 25.0%
! TTACAACACATGATCAAATA+TGG + chr3_3:73803176-73803195 None:intergenic 25.0%
! AATCCAAATCACATAAACAT+TGG - chr3_3:73803361-73803380 Msa0471480:intron 25.0%
! TACGAAACTAAAGCATAATA+TGG - chr3_3:73803403-73803422 Msa0471480:intron 25.0%
! ACTTCAAATCTTCAGTAAAT+TGG + chr3_3:73803573-73803592 None:intergenic 25.0%
! ACTGGTATGTTATTATTACT+TGG + chr3_3:73803889-73803908 None:intergenic 25.0%
! AATAATAACATACCAGTAAC+TGG - chr3_3:73803892-73803911 Msa0471480:intron 25.0%
!! TTTTCAAATCACACTATGAA+TGG + chr3_3:73804334-73804353 None:intergenic 25.0%
! TAGTGTGATTTGAAAAGAAA+TGG - chr3_3:73804338-73804357 Msa0471480:intron 25.0%
!!! GTCATGTCATTAAGTTTTAT+AGG - chr3_3:73804393-73804412 Msa0471480:intron 25.0%
!! GAAATATTTTGCAATCCTTT+TGG - chr3_3:73804517-73804536 Msa0471480:CDS 25.0%
! CATGTGATTACATTTAACTA+TGG + chr3_3:73800796-73800815 None:intergenic 25.0%
! TTAAATGTAATCACATGTGT+CGG - chr3_3:73800799-73800818 Msa0471480:three_prime_UTR 25.0%
!!! CATTTGAATTTTTGTTTGGA+TGG - chr3_3:73800894-73800913 Msa0471480:intron 25.0%
! TATGTTTCTTGTTCTATGTT+AGG - chr3_3:73801053-73801072 Msa0471480:intron 25.0%
!! TGTTTTCATAAGCTATATAC+GGG - chr3_3:73801228-73801247 Msa0471480:intron 25.0%
! AGAGAAACAAACTACAATAA+CGG + chr3_3:73801273-73801292 None:intergenic 25.0%
!!! TATTGTAGTTTGTTTCTCTT+AGG - chr3_3:73801274-73801293 Msa0471480:intron 25.0%
! TCAAATAAGCCAATTCAAAT+AGG - chr3_3:73801469-73801488 Msa0471480:intron 25.0%
! ATATGAACTCATTCTTACTA+GGG + chr3_3:73801495-73801514 None:intergenic 25.0%
! AAGAATGAGTTCATATGAAA+TGG - chr3_3:73801499-73801518 Msa0471480:intron 25.0%
! AGAATGAGTTCATATGAAAT+GGG - chr3_3:73801500-73801519 Msa0471480:intron 25.0%
!! AGAATAAAGCATGAGTATTT+TGG - chr3_3:73801917-73801936 Msa0471480:intron 25.0%
!!! CTTTTGTTGCTTATATTTTG+TGG - chr3_3:73801960-73801979 Msa0471480:intron 25.0%
!!! TTTTTCAGGTGTATAACAAA+TGG + chr3_3:73802080-73802099 None:intergenic 25.0%
!! ATTTTTGTCTTTCTACAGAA+AGG - chr3_3:73802225-73802244 Msa0471480:intron 25.0%
! AAATGAATTTACTATCACCT+GGG + chr3_3:73802295-73802314 None:intergenic 25.0%
! GAATTGTGAATACTTAAAAC+AGG + chr3_3:73802470-73802489 None:intergenic 25.0%
! TTAAGTATTCACAATTCACA+TGG - chr3_3:73802473-73802492 Msa0471480:intron 25.0%
! GATAAAAAATAATGTTTGCC+AGG + chr3_3:73802562-73802581 None:intergenic 25.0%
!! GTATAGATCACATATTTTCT+TGG + chr3_3:73802824-73802843 None:intergenic 25.0%
!! GCAAAGAAGCTAATTATTTT+GGG + chr3_3:73803021-73803040 None:intergenic 25.0%
!! AGCAAAGAAGCTAATTATTT+TGG + chr3_3:73803022-73803041 None:intergenic 25.0%
! TATTTGAACTCAACACTTAA+AGG - chr3_3:73803081-73803100 Msa0471480:intron 25.0%
! TTACAACACATGATCAAATA+TGG + chr3_3:73803176-73803195 None:intergenic 25.0%
! AATCCAAATCACATAAACAT+TGG - chr3_3:73803361-73803380 Msa0471480:intron 25.0%
! TACGAAACTAAAGCATAATA+TGG - chr3_3:73803403-73803422 Msa0471480:intron 25.0%
! ACTTCAAATCTTCAGTAAAT+TGG + chr3_3:73803573-73803592 None:intergenic 25.0%
! ACTGGTATGTTATTATTACT+TGG + chr3_3:73803889-73803908 None:intergenic 25.0%
! AATAATAACATACCAGTAAC+TGG - chr3_3:73803892-73803911 Msa0471480:intron 25.0%
!! TTTTCAAATCACACTATGAA+TGG + chr3_3:73804334-73804353 None:intergenic 25.0%
! TAGTGTGATTTGAAAAGAAA+TGG - chr3_3:73804338-73804357 Msa0471480:intron 25.0%
!!! GTCATGTCATTAAGTTTTAT+AGG - chr3_3:73804393-73804412 Msa0471480:intron 25.0%
!! GAAATATTTTGCAATCCTTT+TGG - chr3_3:73804517-73804536 Msa0471480:CDS 25.0%
!! CTTTAATAAGAAGCCTTGTT+GGG + chr3_3:73800645-73800664 None:intergenic 30.0%
GAGAAACAAACTACAATAAC+GGG + chr3_3:73801272-73801291 None:intergenic 30.0%
CATATGAACTCATTCTTACT+AGG + chr3_3:73801496-73801515 None:intergenic 30.0%
! AATTTCACTTGCTTGCATTT+TGG + chr3_3:73801527-73801546 None:intergenic 30.0%
!!! GAGAATGCTATTTTGTAAGT+AGG - chr3_3:73801587-73801606 Msa0471480:intron 30.0%
!!! TGCTATTTTGTAAGTAGGTT+AGG - chr3_3:73801592-73801611 Msa0471480:intron 30.0%
!!! GCTTTACAATGACTTTTTTC+AGG + chr3_3:73802094-73802113 None:intergenic 30.0%
GCTTACTGAATTCTATATGA+AGG - chr3_3:73802112-73802131 Msa0471480:intron 30.0%
AATGAATTTACTATCACCTG+GGG + chr3_3:73802294-73802313 None:intergenic 30.0%
GAAATGAATTTACTATCACC+TGG + chr3_3:73802296-73802315 None:intergenic 30.0%
GTGATAGTAAATTCATTTCC+TGG - chr3_3:73802297-73802316 Msa0471480:intron 30.0%
TCATCATATAGGTATGGAAA+AGG + chr3_3:73802425-73802444 None:intergenic 30.0%
! TTTTCCATACCTATATGATG+AGG - chr3_3:73802424-73802443 Msa0471480:intron 30.0%
TGAATCATACCTCATCATAT+AGG + chr3_3:73802436-73802455 None:intergenic 30.0%
TCACAATTCACATGGTTTAT+CGG - chr3_3:73802481-73802500 Msa0471480:intron 30.0%
TACTCTGTTTAGCTATAATG+TGG - chr3_3:73802704-73802723 Msa0471480:intron 30.0%
ACTCTGTTTAGCTATAATGT+GGG - chr3_3:73802705-73802724 Msa0471480:intron 30.0%
TATAATCCACATCTGTCAAT+TGG - chr3_3:73802764-73802783 Msa0471480:intron 30.0%
ATAATCCACATCTGTCAATT+GGG - chr3_3:73802765-73802784 Msa0471480:intron 30.0%
!!! TATTTTCTTGGTGATGTCTT+AGG + chr3_3:73802812-73802831 None:intergenic 30.0%
AAAGGGTAAAAAACATCTGT+AGG - chr3_3:73802896-73802915 Msa0471480:intron 30.0%
!!! TTCTTTTTTTGGTAGGAAAG+AGG - chr3_3:73802988-73803007 Msa0471480:CDS 30.0%
!!! TCTTTTTTTGGTAGGAAAGA+GGG - chr3_3:73802989-73803008 Msa0471480:CDS 30.0%
TGTGTTGTAAACAAATGTGA+CGG - chr3_3:73803186-73803205 Msa0471480:intron 30.0%
! TTTCTTTAGCTCAATCAAAG+TGG - chr3_3:73803268-73803287 Msa0471480:intron 30.0%
TCAAAGTGGTACTTAACAAT+TGG - chr3_3:73803282-73803301 Msa0471480:intron 30.0%
GTACCAATGTTTATGTGATT+TGG + chr3_3:73803367-73803386 None:intergenic 30.0%
! TAGAAGATCTTTTACCTGAT+GGG - chr3_3:73803532-73803551 Msa0471480:intron 30.0%
AATAAAACCCTGATCTTTAG+TGG - chr3_3:73803616-73803635 Msa0471480:intron 30.0%
AAATATGACCATGACATTGA+TGG + chr3_3:73804140-73804159 None:intergenic 30.0%
CAGGTCAAAATTTCTTTCAT+GGG + chr3_3:73804203-73804222 None:intergenic 30.0%
ACAGGTCAAAATTTCTTTCA+TGG + chr3_3:73804204-73804223 None:intergenic 30.0%
ATGGAAAGAAAAGAACAAAC+AGG + chr3_3:73804315-73804334 None:intergenic 30.0%
TAATGACATGACATATTCAG+TGG + chr3_3:73804385-73804404 None:intergenic 30.0%
!! AGAAAGCATTTAATCAGAAG+AGG - chr3_3:73804442-73804461 Msa0471480:intron 30.0%
ATACAAGAAACAAAGAACAG+GGG + chr3_3:73804476-73804495 None:intergenic 30.0%
CATACAAGAAACAAAGAACA+GGG + chr3_3:73804477-73804496 None:intergenic 30.0%
ACATACAAGAAACAAAGAAC+AGG + chr3_3:73804478-73804497 None:intergenic 30.0%
!! CTTTAATAAGAAGCCTTGTT+GGG + chr3_3:73800645-73800664 None:intergenic 30.0%
GAGAAACAAACTACAATAAC+GGG + chr3_3:73801272-73801291 None:intergenic 30.0%
CATATGAACTCATTCTTACT+AGG + chr3_3:73801496-73801515 None:intergenic 30.0%
! AATTTCACTTGCTTGCATTT+TGG + chr3_3:73801527-73801546 None:intergenic 30.0%
!!! GAGAATGCTATTTTGTAAGT+AGG - chr3_3:73801587-73801606 Msa0471480:intron 30.0%
!!! TGCTATTTTGTAAGTAGGTT+AGG - chr3_3:73801592-73801611 Msa0471480:intron 30.0%
!!! GCTTTACAATGACTTTTTTC+AGG + chr3_3:73802094-73802113 None:intergenic 30.0%
GCTTACTGAATTCTATATGA+AGG - chr3_3:73802112-73802131 Msa0471480:intron 30.0%
AATGAATTTACTATCACCTG+GGG + chr3_3:73802294-73802313 None:intergenic 30.0%
GAAATGAATTTACTATCACC+TGG + chr3_3:73802296-73802315 None:intergenic 30.0%
GTGATAGTAAATTCATTTCC+TGG - chr3_3:73802297-73802316 Msa0471480:intron 30.0%
TCATCATATAGGTATGGAAA+AGG + chr3_3:73802425-73802444 None:intergenic 30.0%
! TTTTCCATACCTATATGATG+AGG - chr3_3:73802424-73802443 Msa0471480:intron 30.0%
TGAATCATACCTCATCATAT+AGG + chr3_3:73802436-73802455 None:intergenic 30.0%
TCACAATTCACATGGTTTAT+CGG - chr3_3:73802481-73802500 Msa0471480:intron 30.0%
TACTCTGTTTAGCTATAATG+TGG - chr3_3:73802704-73802723 Msa0471480:intron 30.0%
ACTCTGTTTAGCTATAATGT+GGG - chr3_3:73802705-73802724 Msa0471480:intron 30.0%
TATAATCCACATCTGTCAAT+TGG - chr3_3:73802764-73802783 Msa0471480:intron 30.0%
ATAATCCACATCTGTCAATT+GGG - chr3_3:73802765-73802784 Msa0471480:intron 30.0%
!!! TATTTTCTTGGTGATGTCTT+AGG + chr3_3:73802812-73802831 None:intergenic 30.0%
AAAGGGTAAAAAACATCTGT+AGG - chr3_3:73802896-73802915 Msa0471480:intron 30.0%
!!! TTCTTTTTTTGGTAGGAAAG+AGG - chr3_3:73802988-73803007 Msa0471480:CDS 30.0%
!!! TCTTTTTTTGGTAGGAAAGA+GGG - chr3_3:73802989-73803008 Msa0471480:CDS 30.0%
TGTGTTGTAAACAAATGTGA+CGG - chr3_3:73803186-73803205 Msa0471480:intron 30.0%
! TTTCTTTAGCTCAATCAAAG+TGG - chr3_3:73803268-73803287 Msa0471480:intron 30.0%
TCAAAGTGGTACTTAACAAT+TGG - chr3_3:73803282-73803301 Msa0471480:intron 30.0%
GTACCAATGTTTATGTGATT+TGG + chr3_3:73803367-73803386 None:intergenic 30.0%
! TAGAAGATCTTTTACCTGAT+GGG - chr3_3:73803532-73803551 Msa0471480:intron 30.0%
AATAAAACCCTGATCTTTAG+TGG - chr3_3:73803616-73803635 Msa0471480:intron 30.0%
AAATATGACCATGACATTGA+TGG + chr3_3:73804140-73804159 None:intergenic 30.0%
CAGGTCAAAATTTCTTTCAT+GGG + chr3_3:73804203-73804222 None:intergenic 30.0%
ACAGGTCAAAATTTCTTTCA+TGG + chr3_3:73804204-73804223 None:intergenic 30.0%
ATGGAAAGAAAAGAACAAAC+AGG + chr3_3:73804315-73804334 None:intergenic 30.0%
TAATGACATGACATATTCAG+TGG + chr3_3:73804385-73804404 None:intergenic 30.0%
!! AGAAAGCATTTAATCAGAAG+AGG - chr3_3:73804442-73804461 Msa0471480:intron 30.0%
ATACAAGAAACAAAGAACAG+GGG + chr3_3:73804476-73804495 None:intergenic 30.0%
CATACAAGAAACAAAGAACA+GGG + chr3_3:73804477-73804496 None:intergenic 30.0%
ACATACAAGAAACAAAGAAC+AGG + chr3_3:73804478-73804497 None:intergenic 30.0%
GTAGAACCTAACTGAACAAA+TGG + chr3_3:73800532-73800551 None:intergenic 35.0%
! TTGAGTTTGAGATGAAAACC+CGG + chr3_3:73800601-73800620 None:intergenic 35.0%
! GCTTTAATAAGAAGCCTTGT+TGG + chr3_3:73800646-73800665 None:intergenic 35.0%
! GGTTGCTGTCTTATTAATCA+CGG - chr3_3:73800720-73800739 Msa0471480:three_prime_UTR 35.0%
AAAGGAGTAAAGCAAAGACT+CGG + chr3_3:73800836-73800855 None:intergenic 35.0%
! TTGGACATTGGAAGATTTTG+AGG - chr3_3:73800959-73800978 Msa0471480:intron 35.0%
TCTTGTTCTATGTTAGGCTT+AGG - chr3_3:73801059-73801078 Msa0471480:intron 35.0%
AAACCCTTATACTGTAAGCA+GGG + chr3_3:73801101-73801120 None:intergenic 35.0%
TAAACCCTTATACTGTAAGC+AGG + chr3_3:73801102-73801121 None:intergenic 35.0%
TTACTAGGGCCTATTTGAAT+TGG + chr3_3:73801481-73801500 None:intergenic 35.0%
GTCAGTGCTTCATAAAATGA+AGG + chr3_3:73801649-73801668 None:intergenic 35.0%
! TGGTATGTGGCTAAGTTTTA+TGG - chr3_3:73801854-73801873 Msa0471480:intron 35.0%
!! AGTTTTATGGACTGTTCTTG+TGG - chr3_3:73801867-73801886 Msa0471480:intron 35.0%
GGTAGTCAAACAAATTACTG+TGG - chr3_3:73802133-73802152 Msa0471480:intron 35.0%
ATGAATTTACTATCACCTGG+GGG + chr3_3:73802293-73802312 None:intergenic 35.0%
TTTCAACGTAGCTATATTCC+AGG + chr3_3:73802318-73802337 None:intergenic 35.0%
TATTGAATGATCGTCCAACT+TGG - chr3_3:73802339-73802358 Msa0471480:intron 35.0%
CATACCTCATCATATAGGTA+TGG + chr3_3:73802431-73802450 None:intergenic 35.0%
TTAAATAGACATAGCTGTGC+AGG + chr3_3:73802518-73802537 None:intergenic 35.0%
ATATAGACTTAACCCTCCAA+AGG - chr3_3:73802626-73802645 Msa0471480:CDS 35.0%
GCAATCTACTTGTTCTCTAA+TGG + chr3_3:73802683-73802702 None:intergenic 35.0%
!!! TACGCACACATGTTTTAACA+AGG + chr3_3:73802854-73802873 None:intergenic 35.0%
TAAAACATGTGTGCGTAGAA+AGG - chr3_3:73802857-73802876 Msa0471480:intron 35.0%
! GTAGAAGATCTTTTACCTGA+TGG - chr3_3:73803531-73803550 Msa0471480:intron 35.0%
! AGAAGATCTTTTACCTGATG+GGG - chr3_3:73803533-73803552 Msa0471480:intron 35.0%
AATAATAACAGGATGGTCGA+AGG - chr3_3:73803821-73803840 Msa0471480:intron 35.0%
ATAACATACCAGTAACTGGA+AGG - chr3_3:73803896-73803915 Msa0471480:intron 35.0%
TTTCAAAAGAGACTTGAGCT+TGG - chr3_3:73804005-73804024 Msa0471480:intron 35.0%
GCGAGATAATTACAATGTAC+AGG + chr3_3:73804222-73804241 None:intergenic 35.0%
ATAGAACCGAACGAAAAACT+TGG + chr3_3:73804266-73804285 None:intergenic 35.0%
GTAGAACCTAACTGAACAAA+TGG + chr3_3:73800532-73800551 None:intergenic 35.0%
! TTGAGTTTGAGATGAAAACC+CGG + chr3_3:73800601-73800620 None:intergenic 35.0%
! GCTTTAATAAGAAGCCTTGT+TGG + chr3_3:73800646-73800665 None:intergenic 35.0%
! GGTTGCTGTCTTATTAATCA+CGG - chr3_3:73800720-73800739 Msa0471480:three_prime_UTR 35.0%
AAAGGAGTAAAGCAAAGACT+CGG + chr3_3:73800836-73800855 None:intergenic 35.0%
! TTGGACATTGGAAGATTTTG+AGG - chr3_3:73800959-73800978 Msa0471480:intron 35.0%
TCTTGTTCTATGTTAGGCTT+AGG - chr3_3:73801059-73801078 Msa0471480:intron 35.0%
AAACCCTTATACTGTAAGCA+GGG + chr3_3:73801101-73801120 None:intergenic 35.0%
TAAACCCTTATACTGTAAGC+AGG + chr3_3:73801102-73801121 None:intergenic 35.0%
TTACTAGGGCCTATTTGAAT+TGG + chr3_3:73801481-73801500 None:intergenic 35.0%
GTCAGTGCTTCATAAAATGA+AGG + chr3_3:73801649-73801668 None:intergenic 35.0%
! TGGTATGTGGCTAAGTTTTA+TGG - chr3_3:73801854-73801873 Msa0471480:intron 35.0%
!! AGTTTTATGGACTGTTCTTG+TGG - chr3_3:73801867-73801886 Msa0471480:intron 35.0%
GGTAGTCAAACAAATTACTG+TGG - chr3_3:73802133-73802152 Msa0471480:intron 35.0%
ATGAATTTACTATCACCTGG+GGG + chr3_3:73802293-73802312 None:intergenic 35.0%
TTTCAACGTAGCTATATTCC+AGG + chr3_3:73802318-73802337 None:intergenic 35.0%
TATTGAATGATCGTCCAACT+TGG - chr3_3:73802339-73802358 Msa0471480:intron 35.0%
CATACCTCATCATATAGGTA+TGG + chr3_3:73802431-73802450 None:intergenic 35.0%
TTAAATAGACATAGCTGTGC+AGG + chr3_3:73802518-73802537 None:intergenic 35.0%
ATATAGACTTAACCCTCCAA+AGG - chr3_3:73802626-73802645 Msa0471480:CDS 35.0%
GCAATCTACTTGTTCTCTAA+TGG + chr3_3:73802683-73802702 None:intergenic 35.0%
!!! TACGCACACATGTTTTAACA+AGG + chr3_3:73802854-73802873 None:intergenic 35.0%
TAAAACATGTGTGCGTAGAA+AGG - chr3_3:73802857-73802876 Msa0471480:intron 35.0%
! GTAGAAGATCTTTTACCTGA+TGG - chr3_3:73803531-73803550 Msa0471480:intron 35.0%
! AGAAGATCTTTTACCTGATG+GGG - chr3_3:73803533-73803552 Msa0471480:intron 35.0%
AATAATAACAGGATGGTCGA+AGG - chr3_3:73803821-73803840 Msa0471480:intron 35.0%
ATAACATACCAGTAACTGGA+AGG - chr3_3:73803896-73803915 Msa0471480:intron 35.0%
TTTCAAAAGAGACTTGAGCT+TGG - chr3_3:73804005-73804024 Msa0471480:intron 35.0%
GCGAGATAATTACAATGTAC+AGG + chr3_3:73804222-73804241 None:intergenic 35.0%
ATAGAACCGAACGAAAAACT+TGG + chr3_3:73804266-73804285 None:intergenic 35.0%
ACCAAACAGAAGTCACTCTT+AGG + chr3_3:73800507-73800526 None:intergenic 40.0%
TGGTCACCATTTGTTCAGTT+AGG - chr3_3:73800523-73800542 Msa0471480:three_prime_UTR 40.0%
! TTTGAGATGAAAACCCGGTT+TGG + chr3_3:73800596-73800615 None:intergenic 40.0%
!! GAAAGTACTCATACCCAACA+AGG - chr3_3:73800629-73800648 Msa0471480:three_prime_UTR 40.0%
AGACAGCAACCTGAAATTGA+GGG + chr3_3:73800711-73800730 None:intergenic 40.0%
AAGACAGCAACCTGAAATTG+AGG + chr3_3:73800712-73800731 None:intergenic 40.0%
! GTCTTATTAATCACGGACAC+CGG - chr3_3:73800727-73800746 Msa0471480:three_prime_UTR 40.0%
ATGACCCTGCTTACAGTATA+AGG - chr3_3:73801094-73801113 Msa0471480:intron 40.0%
TGACCCTGCTTACAGTATAA+GGG - chr3_3:73801095-73801114 Msa0471480:intron 40.0%
! TATACGGGTGTCGCATATAT+AGG - chr3_3:73801243-73801262 Msa0471480:intron 40.0%
! ATACGGGTGTCGCATATATA+GGG - chr3_3:73801244-73801263 Msa0471480:intron 40.0%
AAGCACTTGTGAGACTGTTT+AGG + chr3_3:73801433-73801452 None:intergenic 40.0%
!! ATGAAGCACTGACAACACAA+TGG - chr3_3:73801656-73801675 Msa0471480:intron 40.0%
AACCATCAATGTCAGTGTCA+CGG - chr3_3:73801713-73801732 Msa0471480:intron 40.0%
! ATTCAGATTGAAGGCGTGTA+TGG + chr3_3:73801759-73801778 None:intergenic 40.0%
CTACGTAGCATTCAGATTGA+AGG + chr3_3:73801768-73801787 None:intergenic 40.0%
! TACATTTTGCACACTGTAGC+TGG + chr3_3:73801817-73801836 None:intergenic 40.0%
ACATACCACAAAATGGTGCA+TGG + chr3_3:73801842-73801861 None:intergenic 40.0%
! ATGCACCATTTTGTGGTATG+TGG - chr3_3:73801841-73801860 Msa0471480:intron 40.0%
CTTAGCCACATACCACAAAA+TGG + chr3_3:73801849-73801868 None:intergenic 40.0%
CCTGCATGACAACATAAAGA+GGG + chr3_3:73802034-73802053 None:intergenic 40.0%
ACCTGCATGACAACATAAAG+AGG + chr3_3:73802035-73802054 None:intergenic 40.0%
GGTGTATAACAAATGGACAG+TGG + chr3_3:73802073-73802092 None:intergenic 40.0%
ATATTTCTTTCCTCAGCAGC+AGG - chr3_3:73802167-73802186 Msa0471480:intron 40.0%
GGTCTTGACTTATGCAAGTT+TGG + chr3_3:73802193-73802212 None:intergenic 40.0%
GCAGAAGATGCTAAATTGTC+TGG - chr3_3:73802395-73802414 Msa0471480:intron 40.0%
!! GATTTTGGAGGGAAAACCTT+TGG + chr3_3:73802645-73802664 None:intergenic 40.0%
!! TTTGCGAGTTGGATTTTGGA+GGG + chr3_3:73802656-73802675 None:intergenic 40.0%
!! TGTGTTTGCGAGTTGGATTT+TGG + chr3_3:73802660-73802679 None:intergenic 40.0%
CTTAACCCAATTGACAGATG+TGG + chr3_3:73802773-73802792 None:intergenic 40.0%
TGTAGGCTTCAACTTCTCTT+AGG - chr3_3:73802913-73802932 Msa0471480:intron 40.0%
! TGCTATCAGCTCTCAGTTTT+AGG + chr3_3:73803479-73803498 None:intergenic 40.0%
TGCTTTCAATTAACCCCATC+AGG + chr3_3:73803549-73803568 None:intergenic 40.0%
GGACATTCCACTAAAGATCA+GGG + chr3_3:73803626-73803645 None:intergenic 40.0%
AGGACATTCCACTAAAGATC+AGG + chr3_3:73803627-73803646 None:intergenic 40.0%
ATGTCCTTTATTGCAGTCAC+AGG - chr3_3:73803640-73803659 Msa0471480:intron 40.0%
ACATCCTGTGACTGCAATAA+AGG + chr3_3:73803647-73803666 None:intergenic 40.0%
AAACACTGATCAACAGTGAC+TGG + chr3_3:73803732-73803751 None:intergenic 40.0%
AGTTAAACCCTCAGATGTCA+AGG - chr3_3:73803767-73803786 Msa0471480:intron 40.0%
CATCATACCTTGACATCTGA+GGG + chr3_3:73803777-73803796 None:intergenic 40.0%
ACATCATACCTTGACATCTG+AGG + chr3_3:73803778-73803797 None:intergenic 40.0%
TTGAATCATCAAACTGACCG+TGG + chr3_3:73803864-73803883 None:intergenic 40.0%
! ACGGTCAGTTTGATGATTCA+AGG - chr3_3:73803863-73803882 Msa0471480:intron 40.0%
GAAACAAACCTTCCAGTTAC+TGG + chr3_3:73803907-73803926 None:intergenic 40.0%
TACCATCAGAGCAAAAACCT+AGG - chr3_3:73804058-73804077 Msa0471480:intron 40.0%
! TACCTAGGTTTTTGCTCTGA+TGG + chr3_3:73804063-73804082 None:intergenic 40.0%
TATGGTCTCCATCAATGTCA+TGG - chr3_3:73804129-73804148 Msa0471480:intron 40.0%
TTCCTGTTTGCATGAAGTGT+TGG - chr3_3:73804159-73804178 Msa0471480:intron 40.0%
ATCCAACACTTCATGCAAAC+AGG + chr3_3:73804164-73804183 None:intergenic 40.0%
! GTGAGTCCAAGTTTTTCGTT+CGG - chr3_3:73804257-73804276 Msa0471480:intron 40.0%
ACCAAACAGAAGTCACTCTT+AGG + chr3_3:73800507-73800526 None:intergenic 40.0%
TGGTCACCATTTGTTCAGTT+AGG - chr3_3:73800523-73800542 Msa0471480:three_prime_UTR 40.0%
! TTTGAGATGAAAACCCGGTT+TGG + chr3_3:73800596-73800615 None:intergenic 40.0%
!! GAAAGTACTCATACCCAACA+AGG - chr3_3:73800629-73800648 Msa0471480:three_prime_UTR 40.0%
AGACAGCAACCTGAAATTGA+GGG + chr3_3:73800711-73800730 None:intergenic 40.0%
AAGACAGCAACCTGAAATTG+AGG + chr3_3:73800712-73800731 None:intergenic 40.0%
! GTCTTATTAATCACGGACAC+CGG - chr3_3:73800727-73800746 Msa0471480:three_prime_UTR 40.0%
ATGACCCTGCTTACAGTATA+AGG - chr3_3:73801094-73801113 Msa0471480:intron 40.0%
TGACCCTGCTTACAGTATAA+GGG - chr3_3:73801095-73801114 Msa0471480:intron 40.0%
! TATACGGGTGTCGCATATAT+AGG - chr3_3:73801243-73801262 Msa0471480:intron 40.0%
! ATACGGGTGTCGCATATATA+GGG - chr3_3:73801244-73801263 Msa0471480:intron 40.0%
AAGCACTTGTGAGACTGTTT+AGG + chr3_3:73801433-73801452 None:intergenic 40.0%
!! ATGAAGCACTGACAACACAA+TGG - chr3_3:73801656-73801675 Msa0471480:intron 40.0%
AACCATCAATGTCAGTGTCA+CGG - chr3_3:73801713-73801732 Msa0471480:intron 40.0%
! ATTCAGATTGAAGGCGTGTA+TGG + chr3_3:73801759-73801778 None:intergenic 40.0%
CTACGTAGCATTCAGATTGA+AGG + chr3_3:73801768-73801787 None:intergenic 40.0%
! TACATTTTGCACACTGTAGC+TGG + chr3_3:73801817-73801836 None:intergenic 40.0%
ACATACCACAAAATGGTGCA+TGG + chr3_3:73801842-73801861 None:intergenic 40.0%
! ATGCACCATTTTGTGGTATG+TGG - chr3_3:73801841-73801860 Msa0471480:intron 40.0%
CTTAGCCACATACCACAAAA+TGG + chr3_3:73801849-73801868 None:intergenic 40.0%
CCTGCATGACAACATAAAGA+GGG + chr3_3:73802034-73802053 None:intergenic 40.0%
ACCTGCATGACAACATAAAG+AGG + chr3_3:73802035-73802054 None:intergenic 40.0%
GGTGTATAACAAATGGACAG+TGG + chr3_3:73802073-73802092 None:intergenic 40.0%
ATATTTCTTTCCTCAGCAGC+AGG - chr3_3:73802167-73802186 Msa0471480:intron 40.0%
GGTCTTGACTTATGCAAGTT+TGG + chr3_3:73802193-73802212 None:intergenic 40.0%
GCAGAAGATGCTAAATTGTC+TGG - chr3_3:73802395-73802414 Msa0471480:intron 40.0%
!! GATTTTGGAGGGAAAACCTT+TGG + chr3_3:73802645-73802664 None:intergenic 40.0%
!! TTTGCGAGTTGGATTTTGGA+GGG + chr3_3:73802656-73802675 None:intergenic 40.0%
!! TGTGTTTGCGAGTTGGATTT+TGG + chr3_3:73802660-73802679 None:intergenic 40.0%
CTTAACCCAATTGACAGATG+TGG + chr3_3:73802773-73802792 None:intergenic 40.0%
TGTAGGCTTCAACTTCTCTT+AGG - chr3_3:73802913-73802932 Msa0471480:intron 40.0%
! TGCTATCAGCTCTCAGTTTT+AGG + chr3_3:73803479-73803498 None:intergenic 40.0%
TGCTTTCAATTAACCCCATC+AGG + chr3_3:73803549-73803568 None:intergenic 40.0%
GGACATTCCACTAAAGATCA+GGG + chr3_3:73803626-73803645 None:intergenic 40.0%
AGGACATTCCACTAAAGATC+AGG + chr3_3:73803627-73803646 None:intergenic 40.0%
ATGTCCTTTATTGCAGTCAC+AGG - chr3_3:73803640-73803659 Msa0471480:intron 40.0%
ACATCCTGTGACTGCAATAA+AGG + chr3_3:73803647-73803666 None:intergenic 40.0%
AAACACTGATCAACAGTGAC+TGG + chr3_3:73803732-73803751 None:intergenic 40.0%
AGTTAAACCCTCAGATGTCA+AGG - chr3_3:73803767-73803786 Msa0471480:intron 40.0%
CATCATACCTTGACATCTGA+GGG + chr3_3:73803777-73803796 None:intergenic 40.0%
ACATCATACCTTGACATCTG+AGG + chr3_3:73803778-73803797 None:intergenic 40.0%
TTGAATCATCAAACTGACCG+TGG + chr3_3:73803864-73803883 None:intergenic 40.0%
! ACGGTCAGTTTGATGATTCA+AGG - chr3_3:73803863-73803882 Msa0471480:intron 40.0%
GAAACAAACCTTCCAGTTAC+TGG + chr3_3:73803907-73803926 None:intergenic 40.0%
TACCATCAGAGCAAAAACCT+AGG - chr3_3:73804058-73804077 Msa0471480:intron 40.0%
! TACCTAGGTTTTTGCTCTGA+TGG + chr3_3:73804063-73804082 None:intergenic 40.0%
TATGGTCTCCATCAATGTCA+TGG - chr3_3:73804129-73804148 Msa0471480:intron 40.0%
TTCCTGTTTGCATGAAGTGT+TGG - chr3_3:73804159-73804178 Msa0471480:intron 40.0%
ATCCAACACTTCATGCAAAC+AGG + chr3_3:73804164-73804183 None:intergenic 40.0%
! GTGAGTCCAAGTTTTTCGTT+CGG - chr3_3:73804257-73804276 Msa0471480:intron 40.0%
GCCTAAGAGTGACTTCTGTT+TGG - chr3_3:73800503-73800522 Msa0471480:three_prime_UTR 45.0%
TTAGGTTCTACTGCCTCTTC+TGG - chr3_3:73800541-73800560 Msa0471480:three_prime_UTR 45.0%
AGAGAGTGAGAATCCAGAAG+AGG + chr3_3:73800557-73800576 None:intergenic 45.0%
ACCATGCTCTGTTTCCAAAC+CGG - chr3_3:73800579-73800598 Msa0471480:three_prime_UTR 45.0%
GCTGCTAGAATTGAGTCCAA+AGG - chr3_3:73800664-73800683 Msa0471480:three_prime_UTR 45.0%
TTTCAGAGCCCCTCAATTTC+AGG - chr3_3:73800699-73800718 Msa0471480:three_prime_UTR 45.0%
GACAGCAACCTGAAATTGAG+GGG + chr3_3:73800710-73800729 None:intergenic 45.0%
CGATGTATCAGTGTCATGTC+CGG + chr3_3:73800749-73800768 None:intergenic 45.0%
GACTGGAAAGGTTTGGACAT+TGG - chr3_3:73800947-73800966 Msa0471480:intron 45.0%
CAGAATCCTACCAATAGAGC+TGG + chr3_3:73800990-73801009 None:intergenic 45.0%
GCTTACCTGTTCTTCTTGTG+CGG - chr3_3:73801296-73801315 Msa0471480:intron 45.0%
ACCATCAATGTCAGTGTCAC+GGG - chr3_3:73801714-73801733 Msa0471480:intron 45.0%
GTATGGTGTCCAAAACGTGT+TGG + chr3_3:73801742-73801761 None:intergenic 45.0%
! GTACTCCATGCACCATTTTG+TGG - chr3_3:73801834-73801853 Msa0471480:intron 45.0%
! TTATCGTTTTCCCTCCTCAG+TGG - chr3_3:73801988-73802007 Msa0471480:intron 45.0%
AACATCGTTACCACTGAGGA+GGG + chr3_3:73802001-73802020 None:intergenic 45.0%
AAACATCGTTACCACTGAGG+AGG + chr3_3:73802002-73802021 None:intergenic 45.0%
GACAAACATCGTTACCACTG+AGG + chr3_3:73802005-73802024 None:intergenic 45.0%
GCATGACAACATAAAGAGGG+AGG + chr3_3:73802031-73802050 None:intergenic 45.0%
CCCTCTTTATGTTGTCATGC+AGG - chr3_3:73802031-73802050 Msa0471480:intron 45.0%
ACAGGATGGACCAGAATTGA+TGG - chr3_3:73802373-73802392 Msa0471480:intron 45.0%
GCATCTTCTGCCATCAATTC+TGG + chr3_3:73802386-73802405 None:intergenic 45.0%
TTGGAGGGAAAACCTTTGGA+GGG + chr3_3:73802641-73802660 None:intergenic 45.0%
TTTGGAGGGAAAACCTTTGG+AGG + chr3_3:73802642-73802661 None:intergenic 45.0%
!! GTTTGCGAGTTGGATTTTGG+AGG + chr3_3:73802657-73802676 None:intergenic 45.0%
CTAATGGTGTGTTTGCGAGT+TGG + chr3_3:73802667-73802686 None:intergenic 45.0%
ACAAATGTGACGGCAAACGT+TGG - chr3_3:73803196-73803215 Msa0471480:intron 45.0%
CAAATGTGACGGCAAACGTT+GGG - chr3_3:73803197-73803216 Msa0471480:intron 45.0%
! GCAATAGATCGTGTTCTGAG+TGG - chr3_3:73804027-73804046 Msa0471480:intron 45.0%
! GGTTTTTGCTCTGATGGTAC+CGG + chr3_3:73804057-73804076 None:intergenic 45.0%
GTGTTGGATGCAGCATAAAG+TGG - chr3_3:73804175-73804194 Msa0471480:intron 45.0%
GCCTAAGAGTGACTTCTGTT+TGG - chr3_3:73800503-73800522 Msa0471480:three_prime_UTR 45.0%
TTAGGTTCTACTGCCTCTTC+TGG - chr3_3:73800541-73800560 Msa0471480:three_prime_UTR 45.0%
AGAGAGTGAGAATCCAGAAG+AGG + chr3_3:73800557-73800576 None:intergenic 45.0%
ACCATGCTCTGTTTCCAAAC+CGG - chr3_3:73800579-73800598 Msa0471480:three_prime_UTR 45.0%
GCTGCTAGAATTGAGTCCAA+AGG - chr3_3:73800664-73800683 Msa0471480:three_prime_UTR 45.0%
TTTCAGAGCCCCTCAATTTC+AGG - chr3_3:73800699-73800718 Msa0471480:three_prime_UTR 45.0%
GACAGCAACCTGAAATTGAG+GGG + chr3_3:73800710-73800729 None:intergenic 45.0%
CGATGTATCAGTGTCATGTC+CGG + chr3_3:73800749-73800768 None:intergenic 45.0%
GACTGGAAAGGTTTGGACAT+TGG - chr3_3:73800947-73800966 Msa0471480:intron 45.0%
CAGAATCCTACCAATAGAGC+TGG + chr3_3:73800990-73801009 None:intergenic 45.0%
GCTTACCTGTTCTTCTTGTG+CGG - chr3_3:73801296-73801315 Msa0471480:intron 45.0%
ACCATCAATGTCAGTGTCAC+GGG - chr3_3:73801714-73801733 Msa0471480:intron 45.0%
GTATGGTGTCCAAAACGTGT+TGG + chr3_3:73801742-73801761 None:intergenic 45.0%
! GTACTCCATGCACCATTTTG+TGG - chr3_3:73801834-73801853 Msa0471480:intron 45.0%
! TTATCGTTTTCCCTCCTCAG+TGG - chr3_3:73801988-73802007 Msa0471480:intron 45.0%
AACATCGTTACCACTGAGGA+GGG + chr3_3:73802001-73802020 None:intergenic 45.0%
AAACATCGTTACCACTGAGG+AGG + chr3_3:73802002-73802021 None:intergenic 45.0%
GACAAACATCGTTACCACTG+AGG + chr3_3:73802005-73802024 None:intergenic 45.0%
GCATGACAACATAAAGAGGG+AGG + chr3_3:73802031-73802050 None:intergenic 45.0%
CCCTCTTTATGTTGTCATGC+AGG - chr3_3:73802031-73802050 Msa0471480:intron 45.0%
ACAGGATGGACCAGAATTGA+TGG - chr3_3:73802373-73802392 Msa0471480:intron 45.0%
GCATCTTCTGCCATCAATTC+TGG + chr3_3:73802386-73802405 None:intergenic 45.0%
TTGGAGGGAAAACCTTTGGA+GGG + chr3_3:73802641-73802660 None:intergenic 45.0%
TTTGGAGGGAAAACCTTTGG+AGG + chr3_3:73802642-73802661 None:intergenic 45.0%
!! GTTTGCGAGTTGGATTTTGG+AGG + chr3_3:73802657-73802676 None:intergenic 45.0%
CTAATGGTGTGTTTGCGAGT+TGG + chr3_3:73802667-73802686 None:intergenic 45.0%
ACAAATGTGACGGCAAACGT+TGG - chr3_3:73803196-73803215 Msa0471480:intron 45.0%
CAAATGTGACGGCAAACGTT+GGG - chr3_3:73803197-73803216 Msa0471480:intron 45.0%
! GCAATAGATCGTGTTCTGAG+TGG - chr3_3:73804027-73804046 Msa0471480:intron 45.0%
! GGTTTTTGCTCTGATGGTAC+CGG + chr3_3:73804057-73804076 None:intergenic 45.0%
GTGTTGGATGCAGCATAAAG+TGG - chr3_3:73804175-73804194 Msa0471480:intron 45.0%
!!! TTTTTTAATGAATTTTTTAA+TGG + chr3_3:73801560-73801579 None:intergenic 5.0%
!! ATAAAAATGTTTATATAATT+TGG + chr3_3:73803456-73803475 None:intergenic 5.0%
!! AAATAAATAAATTAATCAAA+AGG + chr3_3:73803983-73804002 None:intergenic 5.0%
!!! TTTTTTAATGAATTTTTTAA+TGG + chr3_3:73801560-73801579 None:intergenic 5.0%
!! ATAAAAATGTTTATATAATT+TGG + chr3_3:73803456-73803475 None:intergenic 5.0%
!! AAATAAATAAATTAATCAAA+AGG + chr3_3:73803983-73804002 None:intergenic 5.0%
CCATGCTCTGTTTCCAAACC+GGG - chr3_3:73800580-73800599 Msa0471480:three_prime_UTR 50.0%
!! TGAGTCCAAAGGTGTCACCT+TGG - chr3_3:73800675-73800694 Msa0471480:three_prime_UTR 50.0%
!! GAGTCCAAAGGTGTCACCTT+GGG - chr3_3:73800676-73800695 Msa0471480:three_prime_UTR 50.0%
GAAACCCAAGGTGACACCTT+TGG + chr3_3:73800683-73800702 None:intergenic 50.0%
TAGCTTTCAGAGCCTCTGAC+TGG - chr3_3:73800930-73800949 Msa0471480:intron 50.0%
TTCAGAGCCTCTGACTGGAA+AGG - chr3_3:73800935-73800954 Msa0471480:intron 50.0%
AGCCTCTGACTGGAAAGGTT+TGG - chr3_3:73800940-73800959 Msa0471480:intron 50.0%
GTCCAAACCTTTCCAGTCAG+AGG + chr3_3:73800945-73800964 None:intergenic 50.0%
TGAGGCTCATCCAGCTCTAT+TGG - chr3_3:73800977-73800996 Msa0471480:intron 50.0%
GCTCATCCAGCTCTATTGGT+AGG - chr3_3:73800981-73801000 Msa0471480:intron 50.0%
CTACACCGCACAAGAAGAAC+AGG + chr3_3:73801304-73801323 None:intergenic 50.0%
TGTGACGCAGAACTCCAAGT+TGG + chr3_3:73802356-73802375 None:intergenic 50.0%
AACTTGGAGTTCTGCGTCAC+AGG - chr3_3:73802355-73802374 Msa0471480:intron 50.0%
TGCAGTCACAGGATGTTGCA+CGG - chr3_3:73803651-73803670 Msa0471480:intron 50.0%
! CAGGATGTTGCACGGGATTT+TGG - chr3_3:73803659-73803678 Msa0471480:intron 50.0%
CCGTGGTAAACCAGCTCAAA+CGG + chr3_3:73803847-73803866 None:intergenic 50.0%
! CCGTTTGAGCTGGTTTACCA+CGG - chr3_3:73803844-73803863 Msa0471480:intron 50.0%
CCATGCTCTGTTTCCAAACC+GGG - chr3_3:73800580-73800599 Msa0471480:three_prime_UTR 50.0%
!! TGAGTCCAAAGGTGTCACCT+TGG - chr3_3:73800675-73800694 Msa0471480:three_prime_UTR 50.0%
!! GAGTCCAAAGGTGTCACCTT+GGG - chr3_3:73800676-73800695 Msa0471480:three_prime_UTR 50.0%
GAAACCCAAGGTGACACCTT+TGG + chr3_3:73800683-73800702 None:intergenic 50.0%
TAGCTTTCAGAGCCTCTGAC+TGG - chr3_3:73800930-73800949 Msa0471480:intron 50.0%
TTCAGAGCCTCTGACTGGAA+AGG - chr3_3:73800935-73800954 Msa0471480:intron 50.0%
AGCCTCTGACTGGAAAGGTT+TGG - chr3_3:73800940-73800959 Msa0471480:intron 50.0%
GTCCAAACCTTTCCAGTCAG+AGG + chr3_3:73800945-73800964 None:intergenic 50.0%
TGAGGCTCATCCAGCTCTAT+TGG - chr3_3:73800977-73800996 Msa0471480:intron 50.0%
GCTCATCCAGCTCTATTGGT+AGG - chr3_3:73800981-73801000 Msa0471480:intron 50.0%
CTACACCGCACAAGAAGAAC+AGG + chr3_3:73801304-73801323 None:intergenic 50.0%
TGTGACGCAGAACTCCAAGT+TGG + chr3_3:73802356-73802375 None:intergenic 50.0%
AACTTGGAGTTCTGCGTCAC+AGG - chr3_3:73802355-73802374 Msa0471480:intron 50.0%
TGCAGTCACAGGATGTTGCA+CGG - chr3_3:73803651-73803670 Msa0471480:intron 50.0%
! CAGGATGTTGCACGGGATTT+TGG - chr3_3:73803659-73803678 Msa0471480:intron 50.0%
CCGTGGTAAACCAGCTCAAA+CGG + chr3_3:73803847-73803866 None:intergenic 50.0%
! CCGTTTGAGCTGGTTTACCA+CGG - chr3_3:73803844-73803863 Msa0471480:intron 50.0%
!! CCCGGTTTGGAAACAGAGCA+TGG + chr3_3:73800583-73800602 None:intergenic 55.0%
!! TTGAGGGGCTCTGAAACCCA+AGG + chr3_3:73800695-73800714 None:intergenic 55.0%
GCCCGTGACACTGACATTGA+TGG + chr3_3:73801718-73801737 None:intergenic 55.0%
! TCACGGGCACCAACACGTTT+TGG - chr3_3:73801730-73801749 Msa0471480:intron 55.0%
! TACTATCACCTGGGGGTGTG+TGG + chr3_3:73802286-73802305 None:intergenic 55.0%
TGGAGTTCTGCGTCACAGGA+TGG - chr3_3:73802359-73802378 Msa0471480:intron 55.0%
GCAGTCACAGGATGTTGCAC+GGG - chr3_3:73803652-73803671 Msa0471480:intron 55.0%
!! TTTGCTCTGATGGTACCGGC+TGG + chr3_3:73804053-73804072 None:intergenic 55.0%
!! CCCGGTTTGGAAACAGAGCA+TGG + chr3_3:73800583-73800602 None:intergenic 55.0%
!! TTGAGGGGCTCTGAAACCCA+AGG + chr3_3:73800695-73800714 None:intergenic 55.0%
GCCCGTGACACTGACATTGA+TGG + chr3_3:73801718-73801737 None:intergenic 55.0%
! TCACGGGCACCAACACGTTT+TGG - chr3_3:73801730-73801749 Msa0471480:intron 55.0%
! TACTATCACCTGGGGGTGTG+TGG + chr3_3:73802286-73802305 None:intergenic 55.0%
TGGAGTTCTGCGTCACAGGA+TGG - chr3_3:73802359-73802378 Msa0471480:intron 55.0%
GCAGTCACAGGATGTTGCAC+GGG - chr3_3:73803652-73803671 Msa0471480:intron 55.0%
!! TTTGCTCTGATGGTACCGGC+TGG + chr3_3:73804053-73804072 None:intergenic 55.0%
GCAAGTTTGGCCTGCTGCTG+AGG + chr3_3:73802180-73802199 None:intergenic 60.0%
TGGTCGAAGGCCGTTTGAGC+TGG - chr3_3:73803834-73803853 Msa0471480:intron 60.0%
! TCGTGTTCTGAGTGGCCAGC+CGG - chr3_3:73804035-73804054 Msa0471480:intron 60.0%
GCAAGTTTGGCCTGCTGCTG+AGG + chr3_3:73802180-73802199 None:intergenic 60.0%
TGGTCGAAGGCCGTTTGAGC+TGG - chr3_3:73803834-73803853 Msa0471480:intron 60.0%
! TCGTGTTCTGAGTGGCCAGC+CGG - chr3_3:73804035-73804054 Msa0471480:intron 60.0%
TTCCGTAGCCACACACCCCC+AGG - chr3_3:73802275-73802294 Msa0471480:intron 65.0%
! CACCTGGGGGTGTGTGGCTA+CGG + chr3_3:73802280-73802299 None:intergenic 65.0%
TTCCGTAGCCACACACCCCC+AGG - chr3_3:73802275-73802294 Msa0471480:intron 65.0%
! CACCTGGGGGTGTGTGGCTA+CGG + chr3_3:73802280-73802299 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 73800493 73804578 73800493 ID=Msa0471480;Name=Msa0471480
chr3_3 mRNA 73800493 73804578 73800493 ID=Msa0471480-mRNA-1;Parent=Msa0471480;Name=Msa0471480-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|0.87|0.77|1|0.75|0.55|9|372|205
chr3_3 exon 73800493 73800895 73800493 ID=Msa0471480-mRNA-1:exon:18792;Parent=Msa0471480-mRNA-1
chr3_3 exon 73800992 73801057 73800992 ID=Msa0471480-mRNA-1:exon:18791;Parent=Msa0471480-mRNA-1
chr3_3 exon 73801154 73801239 73801154 ID=Msa0471480-mRNA-1:exon:18790;Parent=Msa0471480-mRNA-1
chr3_3 exon 73801353 73801415 73801353 ID=Msa0471480-mRNA-1:exon:18789;Parent=Msa0471480-mRNA-1
chr3_3 exon 73802626 73802694 73802626 ID=Msa0471480-mRNA-1:exon:18788;Parent=Msa0471480-mRNA-1
chr3_3 exon 73802775 73802828 73802775 ID=Msa0471480-mRNA-1:exon:18787;Parent=Msa0471480-mRNA-1
chr3_3 exon 73802938 73803018 73802938 ID=Msa0471480-mRNA-1:exon:18786;Parent=Msa0471480-mRNA-1
chr3_3 exon 73804073 73804131 73804073 ID=Msa0471480-mRNA-1:exon:18785;Parent=Msa0471480-mRNA-1
chr3_3 exon 73804470 73804578 73804470 ID=Msa0471480-mRNA-1:exon:18784;Parent=Msa0471480-mRNA-1
chr3_3 CDS 73804470 73804578 73804470 ID=Msa0471480-mRNA-1:cds;Parent=Msa0471480-mRNA-1
chr3_3 CDS 73804073 73804131 73804073 ID=Msa0471480-mRNA-1:cds;Parent=Msa0471480-mRNA-1
chr3_3 CDS 73802938 73803018 73802938 ID=Msa0471480-mRNA-1:cds;Parent=Msa0471480-mRNA-1
chr3_3 CDS 73802775 73802828 73802775 ID=Msa0471480-mRNA-1:cds;Parent=Msa0471480-mRNA-1
chr3_3 CDS 73802626 73802694 73802626 ID=Msa0471480-mRNA-1:cds;Parent=Msa0471480-mRNA-1
chr3_3 CDS 73801353 73801415 73801353 ID=Msa0471480-mRNA-1:cds;Parent=Msa0471480-mRNA-1
chr3_3 CDS 73801154 73801239 73801154 ID=Msa0471480-mRNA-1:cds;Parent=Msa0471480-mRNA-1
chr3_3 CDS 73800992 73801057 73800992 ID=Msa0471480-mRNA-1:cds;Parent=Msa0471480-mRNA-1
chr3_3 CDS 73800865 73800895 73800865 ID=Msa0471480-mRNA-1:cds;Parent=Msa0471480-mRNA-1
chr3_3 three_prime_UTR 73800493 73800864 73800493 ID=Msa0471480-mRNA-1:three_prime_utr;Parent=Msa0471480-mRNA-1
Gene Sequence

>Msa0471480

ATGGCACTAAGCCTAAGAGTGACTTCTGTTTGGTCACCATTTGTTCAGTTAGGTTCTACTGCCTCTTCTGGATTCTCACTCTCTCAACCATGCTCTGTTTCCAAACCGGAGCCTCTGACTGGAAAGGTTTGGACATTGGAAGATTTTGAGGCTCATCCAGCTCTATTGGTTATGTTTATATGCAACCACTGTCCATTTGTTATACACCTGAAAAAAGTCATTGTAAAGCTTACTGAATTCTATATGAAGAAAGGACTTGCTGTCGTTGCTATATCTTCAAATTCCGTAGCCACACACCCCCAGGATGGACCAGAATTGATGGCAGAAGATGCTAAATTGTCTGGATATCCTTTTCCATACCTATATGATGAGTCACAGGATGTTGCACGGGATTTTGGAGCAGTTTGTACACCAGAATTTTACCTTTTTAAAAAGGATGGTCGAAGGCCGTTTGAGCTGGTTTACCACGGTCAGTTTGATGATTCAAGGCCAAGTAATAATAACATACCAGTAACTGGAAGAGACTTGAGCTTGGCAATAGATCGTGTTCTGAGTGGCCAGCCGGTACCATCAGAGCAAAAACCTAGTGTTGGATGCAGCATAAAGTGGCACCCATGA

Protein sequence

>Msa0471480

MALSLRVTSVWSPFVQLGSTASSGFSLSQPCSVSKPEPLTGKVWTLEDFEAHPALLVMFICNHCPFVIHLKKVIVKLTEFYMKKGLAVVAISSNSVATHPQDGPELMAEDAKLSGYPFPYLYDESQDVARDFGAVCTPEFYLFKKDGRRPFELVYHGQFDDSRPSNNNIPVTGRDLSLAIDRVLSGQPVPSEQKPSVGCSIKWHP*