AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1024610


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1024610 MtrunA17_Chr7g0242281 95.161 496 19 1 1 496 1 491 0.0 926
Msa1024610 MtrunA17_Chr5g0419261 27.865 384 247 10 111 481 60 426 2.95e-37 142
Msa1024610 MtrunA17_Chr5g0407831 27.252 444 265 13 79 481 139 565 1.06e-33 134
Msa1024610 MtrunA17_Chr4g0076831 27.366 391 257 8 98 476 99 474 8.30e-32 127
Msa1024610 MtrunA17_Chr4g0039601 28.827 392 250 11 98 476 87 462 8.07e-31 125
Msa1024610 MtrunA17_Chr7g0261271 24.764 424 279 10 65 481 15 405 1.59e-29 120
Msa1024610 MtrunA17_Chr7g0237291 25.581 258 171 6 112 361 111 355 8.32e-19 89.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1024610 AT5G01510.1 65.237 443 145 3 59 492 61 503 0.0 546
Msa1024610 AT3G45890.1 26.207 435 279 10 32 442 121 537 5.90e-37 144
Msa1024610 AT5G49820.1 28.800 375 242 10 98 463 94 452 9.43e-30 122
Msa1024610 AT1G13770.1 24.021 383 264 9 111 481 52 419 1.06e-28 118
Msa1024610 AT1G13770.4 27.160 243 170 3 103 344 44 280 3.38e-27 111
Msa1024610 AT1G13770.3 27.660 235 163 3 111 344 52 280 7.13e-27 112
Msa1024610 AT2G31190.2 24.528 424 280 12 65 481 32 422 6.25e-26 110
Msa1024610 AT2G31190.1 24.528 424 280 12 65 481 33 423 6.82e-26 110
Msa1024610 AT2G23470.1 28.700 223 152 2 57 279 64 279 2.32e-22 100
Msa1024610 AT1G13770.2 23.615 343 235 9 151 481 5 332 3.58e-22 98.2

Find 124 sgRNAs with CRISPR-Local

Find 362 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTTATGCATTGAATAATT+TGG 0.142568 7_1:-54115140 None:intergenic
GCATTTCAAGCTTTGGATAT+TGG 0.195174 7_1:+54109296 Msa1024610:five_prime_UTR
GGTGAACCGAAAATTATTAT+TGG 0.215950 7_1:-54114187 None:intergenic
GCATACATTCTCCATTGTTT+TGG 0.217722 7_1:-54112258 None:intergenic
ATCATCAATTGAAATTTCTT+TGG 0.219699 7_1:-54115017 None:intergenic
TAACAGATCAGTGCCTTATT+TGG 0.223872 7_1:+54115354 Msa1024610:three_prime_UTR
AAAGATGATGATGTTAATAA+AGG 0.233940 7_1:+54109507 Msa1024610:CDS
GCAAGGAATCTTTCCAAATA+AGG 0.237095 7_1:-54115367 None:intergenic
CTTTGCAATTTCAGTAAATC+TGG 0.249782 7_1:+54113067 Msa1024610:CDS
CTGCTTCTGCTGCTGCCATC+AGG 0.250457 7_1:+54111921 Msa1024610:CDS
CAATTGGTTGGTCTTGGTTT+GGG 0.254535 7_1:+54113586 Msa1024610:CDS
ATCTTTGAAACTGGAATGTT+TGG 0.255255 7_1:-54109490 None:intergenic
CATTCCATCCATCTTGTCTA+AGG 0.292124 7_1:-54114209 None:intergenic
GAAGCATATGGCAGACATTC+TGG 0.299004 7_1:+54114852 Msa1024610:CDS
TTAATGAACAGATACGTAAT+TGG 0.300003 7_1:+54110615 Msa1024610:intron
GTTGGTGTTGGTTCTTTCTC+TGG 0.300751 7_1:+54111887 Msa1024610:CDS
CATTCTGGCTTAGTGAGAAT+TGG 0.301398 7_1:+54114867 Msa1024610:CDS
GGTCTCTGCAAAACAGGTTT+GGG 0.302750 7_1:+54110679 Msa1024610:CDS
TCAATTGGTTGGTCTTGGTT+TGG 0.303687 7_1:+54113585 Msa1024610:CDS
ATAAAATCTTTAATCCTATC+TGG 0.305573 7_1:-54110738 None:intergenic
GAAAGTATCCGGGATATAAC+TGG 0.312984 7_1:-54112412 None:intergenic
TCCCGGATACTTTCTTCCTT+TGG 0.322911 7_1:+54112421 Msa1024610:CDS
GCCTAATGGAATTGGAAAAT+AGG 0.325397 7_1:+54114927 Msa1024610:CDS
AACATCATCATCTTTGAAAC+TGG 0.327172 7_1:-54109499 None:intergenic
ATTCTACCTGCAGGCTTTCC+CGG 0.336688 7_1:+54110759 Msa1024610:CDS
TAATATCTCAGGAAGAAGTT+TGG 0.345220 7_1:+54113551 Msa1024610:intron
TTGTACGGCTTCTTCATCTT+TGG 0.346675 7_1:+54113772 Msa1024610:CDS
TCTTTCTGCATTTCAAGCTT+TGG 0.346879 7_1:+54109289 Msa1024610:five_prime_UTR
TTTCTATATATGTTAGTGTT+TGG 0.348846 7_1:+54115320 Msa1024610:three_prime_UTR
TCATCAATTGAAATTTCTTT+GGG 0.350605 7_1:-54115016 None:intergenic
TGCCAGTAGCCTAATGGAAT+TGG 0.355134 7_1:+54114919 Msa1024610:CDS
AAGATGATGATGTTAATAAA+GGG 0.356132 7_1:+54109508 Msa1024610:CDS
GTAGCTCAATTGGTTGGTCT+TGG 0.361164 7_1:+54113580 Msa1024610:CDS
TTTCTTCCTTTGGCATCTCT+TGG 0.375549 7_1:+54112431 Msa1024610:CDS
TGGTTTGGGCATATTGATAC+TGG 0.380527 7_1:+54113600 Msa1024610:CDS
ACATGCTTACCGTGTTAAAC+TGG 0.381456 7_1:-54113821 None:intergenic
TTGGGAAGTTGTAGCTCAAT+TGG 0.384419 7_1:+54113570 Msa1024610:CDS
CACTTGCAGGCTGTTGGTGT+TGG 0.386855 7_1:+54111875 Msa1024610:intron
AGGATTATCAAGGGTGATAT+TGG 0.393461 7_1:+54109657 Msa1024610:CDS
TAGGAGACTTGAAGTGACTA+TGG 0.397489 7_1:-54111258 None:intergenic
CCCCTTCACTTGCAGGCTGT+TGG 0.399709 7_1:+54111869 Msa1024610:intron
AATATCTCAGGAAGAAGTTT+GGG 0.400898 7_1:+54113552 Msa1024610:intron
TGGAATTATTTCAGGATGCT+TGG 0.402637 7_1:+54114117 Msa1024610:intron
GCAGACTTCATTGGCAGTGC+TGG 0.407400 7_1:+54112279 Msa1024610:CDS
CATCAACTTGGTTGATTGTA+CGG 0.407754 7_1:+54113757 Msa1024610:CDS
AGGTCTCTGCAAAACAGGTT+TGG 0.411007 7_1:+54110678 Msa1024610:CDS
TTCCAATTCCATTAGGCTAC+TGG 0.411161 7_1:-54114921 None:intergenic
TAATTTGGCTGATCACAGTT+TGG 0.418802 7_1:-54115125 None:intergenic
TACTCAACAATTAAATTTGA+AGG 0.423130 7_1:+54114991 Msa1024610:CDS
TCCAAATTCTAACACGGGTC+AGG 0.423841 7_1:+54109226 None:intergenic
TAGTGAGAATTGGGAGAGAA+AGG 0.431792 7_1:+54114877 Msa1024610:CDS
TGCCAAAGGAAGAAAGTATC+CGG 0.432417 7_1:-54112423 None:intergenic
AGGATAGGTCTCTGCAAAAC+AGG 0.433677 7_1:+54110673 Msa1024610:CDS
ATTCTGGCTTAGTGAGAATT+GGG 0.446216 7_1:+54114868 Msa1024610:CDS
AGCAGCAGAAGCAGCTGCTG+TGG 0.459258 7_1:-54111912 None:intergenic
AAAAGTTGAAAGATGCTGAA+TGG 0.461318 7_1:+54114966 Msa1024610:CDS
CGGTTCACCCTTAGACAAGA+TGG 0.462228 7_1:+54114201 Msa1024610:CDS
AAAGTTGAAAGATGCTGAAT+GGG 0.463223 7_1:+54114967 Msa1024610:CDS
TAACACGGGTCAGGTCAAAT+CGG 0.464112 7_1:+54109235 None:intergenic
TTTGAAACTGGAATGTTTGG+AGG 0.467151 7_1:-54109487 None:intergenic
TCAACTTGCCAGTAGCCTAA+TGG 0.467930 7_1:+54114913 Msa1024610:CDS
GACTATCCTGGCTTCCAGAT+AGG 0.471080 7_1:+54110724 Msa1024610:CDS
CTGAATGTAACCTGGAACAG+TGG 0.482339 7_1:-54114033 None:intergenic
TCTCGGTATTGCGAAGCATA+TGG 0.483109 7_1:+54114840 Msa1024610:CDS
AACACGGGTCAGGTCAAATC+GGG 0.487533 7_1:+54109236 Msa1024610:five_prime_UTR
TTTGCAATTTCAGTAAATCT+GGG 0.495289 7_1:+54113068 Msa1024610:CDS
AGTGAGAATTGGGAGAGAAA+GGG 0.498020 7_1:+54114878 Msa1024610:CDS
ATCTCTTGGAAATCTTACTA+AGG 0.499636 7_1:+54112445 Msa1024610:CDS
TTTAATCCTATCTGGAAGCC+AGG 0.499967 7_1:-54110730 None:intergenic
CCATTCTAGTTGAGGAGGAT+AGG 0.503587 7_1:+54110658 Msa1024610:CDS
CCTATCCTCCTCAACTAGAA+TGG 0.506141 7_1:-54110658 None:intergenic
TGGGTCTCAAAGGACGGCAT+TGG 0.507950 7_1:+54112092 Msa1024610:CDS
CTACTTAATCATCTTTGAAG+AGG 0.510846 7_1:-54115257 None:intergenic
AGGACGGCATTGGAGCTGTC+GGG 0.514764 7_1:+54112102 Msa1024610:CDS
GAAGTTGTAGCTCAATTGGT+TGG 0.519901 7_1:+54113574 Msa1024610:CDS
ATACTGTACTTTCATCAACT+TGG 0.527353 7_1:+54113745 Msa1024610:CDS
TTAGAGGTGAAGGATTATCA+AGG 0.528187 7_1:+54109647 Msa1024610:intron
ATCCATCCAGTCACATTGGT+AGG 0.529733 7_1:-54111227 None:intergenic
AGAATGTATGCAGACTTCAT+TGG 0.530282 7_1:+54112270 Msa1024610:CDS
AAGGACGGCATTGGAGCTGT+CGG 0.537285 7_1:+54112101 Msa1024610:CDS
CTTAGACAAGATGGATGGAA+TGG 0.537463 7_1:+54114210 Msa1024610:CDS
ATTATCAAGGGTGATATTGG+TGG 0.553974 7_1:+54109660 Msa1024610:CDS
CTTTGAATCACTCTAGAAGA+AGG 0.556421 7_1:-54113041 None:intergenic
TCCCTACCAATGTGACTGGA+TGG 0.558437 7_1:+54111225 Msa1024610:CDS
CAGTTCCCTACCAATGTGAC+TGG 0.562304 7_1:+54111221 Msa1024610:CDS
TAATTACCGGGAAAGCCTGC+AGG 0.564587 7_1:-54110765 None:intergenic
ACTTCATTGGCAGTGCTGGA+AGG 0.564752 7_1:+54112283 Msa1024610:CDS
GTAGTGCTTTCTATACATGC+AGG 0.564807 7_1:+54115286 Msa1024610:three_prime_UTR
AGTCACTTCAAGTCTCCTAA+AGG 0.566137 7_1:+54111262 Msa1024610:CDS
CATCTTTAGATGGGTCTCAA+AGG 0.567687 7_1:+54112082 Msa1024610:intron
TCTGGGAGAGGTAGCAGCAA+AGG 0.572717 7_1:+54113085 Msa1024610:CDS
CTGACAACCCAGTTATATCC+CGG 0.581410 7_1:+54112404 Msa1024610:CDS
GCAAACCATTCTAGTTGAGG+AGG 0.584171 7_1:+54110653 Msa1024610:CDS
AACTTTCCAAATTCTAACAC+GGG 0.584592 7_1:+54109221 None:intergenic
ATTGCAAACCATTCTAGTTG+AGG 0.585851 7_1:+54110650 Msa1024610:CDS
GAAAGAGCCACGAGTCGGAT+CGG 0.586359 7_1:-54109272 None:intergenic
GCCAAAGGAAGAAAGTATCC+GGG 0.588350 7_1:-54112422 None:intergenic
TAGAGGTGAAGGATTATCAA+GGG 0.589692 7_1:+54109648 Msa1024610:intron
AATTTCAGTAAATCTGGGAG+AGG 0.591324 7_1:+54113073 Msa1024610:CDS
TCCATCCAGTCACATTGGTA+GGG 0.591774 7_1:-54111226 None:intergenic
ATTCCATCCATCTTGTCTAA+GGG 0.591924 7_1:-54114208 None:intergenic
ATAGCAATGGTACTGCTAAG+AGG 0.594451 7_1:+54109689 Msa1024610:CDS
GATCAACTCTCGAAAACCCC+GGG 0.601382 7_1:-54115101 None:intergenic
GTCTCTGCAAAACAGGTTTG+GGG 0.604028 7_1:+54110680 Msa1024610:CDS
GGTTGGAGCTACAAGTGTCT+CGG 0.609927 7_1:+54114823 Msa1024610:intron
ATGTGAGAGCTAGCTTAGCA+AGG 0.615941 7_1:-54115384 None:intergenic
TTAAAACAGGCTATAGCAAG+AGG 0.616791 7_1:+54113008 Msa1024610:intron
AGGATGCTTGGATTGCAACA+AGG 0.617496 7_1:+54114129 Msa1024610:intron
TCGACGATGATCCAAAACAA+TGG 0.620424 7_1:+54112247 Msa1024610:CDS
AAAGTATCCGGGATATAACT+GGG 0.620739 7_1:-54112411 None:intergenic
TCACCCTTAGACAAGATGGA+TGG 0.624194 7_1:+54114205 Msa1024610:CDS
TTTAGATGGGTCTCAAAGGA+CGG 0.625244 7_1:+54112086 Msa1024610:intron
ACATATCCATCCAGTCACAT+TGG 0.626260 7_1:-54111231 None:intergenic
CGATCAACTCTCGAAAACCC+CGG 0.626988 7_1:-54115102 None:intergenic
TTCAGTTCTCCAGTTTAACA+CGG 0.628698 7_1:+54113812 Msa1024610:CDS
CTCCTGATAAAAGACTATCC+TGG 0.636408 7_1:+54110712 Msa1024610:CDS
AAATGAGAAATATATTCTTG+TGG 0.641580 7_1:+54114387 Msa1024610:CDS
AGATTTCCAAGAGATGCCAA+AGG 0.646763 7_1:-54112437 None:intergenic
AGGAAGAGAATATATTAGTG+TGG 0.649489 7_1:+54114149 Msa1024610:CDS
AGAAGCTCCGATCCGACTCG+TGG 0.652017 7_1:+54109265 Msa1024610:five_prime_UTR
GATTTACTGAAATTGCAAAG+TGG 0.657297 7_1:-54113064 None:intergenic
ATGCAGAAAGAGCCACGAGT+CGG 0.667912 7_1:-54109277 None:intergenic
TTGGTGGAGAGATATAGCAA+TGG 0.703982 7_1:+54109676 Msa1024610:CDS
CATAGAATTTGAAAACTACG+AGG 0.716356 7_1:-54109462 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGATATTTTTTTATAACATT+TGG - chr7_1:54111448-54111467 None:intergenic 10.0%
!! TATAACAAAAGATAAAATAA+AGG - chr7_1:54112765-54112784 None:intergenic 10.0%
!! GAATAAATAATTATGAATTT+AGG - chr7_1:54114299-54114318 None:intergenic 10.0%
!! TATATCTAATATTATAATCT+AGG - chr7_1:54114510-54114529 None:intergenic 10.0%
!!! ATACTTTTTAAATTCTAAAA+TGG + chr7_1:54115044-54115063 Msa1024610:exon 10.0%
!!! GATTTGAGTTAATTAAATTA+AGG + chr7_1:54109565-54109584 Msa1024610:intron 15.0%
!! AAATTTCTAATGATACAATT+AGG + chr7_1:54110986-54111005 Msa1024610:intron 15.0%
!!! TTGATAATAATTTGAGAAAA+TGG + chr7_1:54111638-54111657 Msa1024610:intron 15.0%
!! TCAATTCACAATAATTATTA+TGG + chr7_1:54112937-54112956 Msa1024610:intron 15.0%
!! ATAAAAATGTATTCATAGAT+AGG - chr7_1:54113202-54113221 None:intergenic 15.0%
!! AAATTAAGAAAAACTAGATA+AGG - chr7_1:54113303-54113322 None:intergenic 15.0%
!!! AAAGATGATGATGTTAATAA+AGG + chr7_1:54109507-54109526 Msa1024610:CDS 20.0%
!!! AAGATGATGATGTTAATAAA+GGG + chr7_1:54109508-54109527 Msa1024610:CDS 20.0%
!!! GTTTATCTTATTTTGTTTAG+AGG + chr7_1:54109631-54109650 Msa1024610:intron 20.0%
!! TGTTAATTTAGTTACGTTAT+AGG + chr7_1:54110025-54110044 Msa1024610:intron 20.0%
!! GTTAATTTAGTTACGTTATA+GGG + chr7_1:54110026-54110045 Msa1024610:intron 20.0%
!! CTATAAATAAGAAATACTCA+TGG + chr7_1:54110299-54110318 Msa1024610:intron 20.0%
!!! ATTAAAGTTTGTTTTAGAGA+AGG - chr7_1:54110576-54110595 None:intergenic 20.0%
!! ATAAAATCTTTAATCCTATC+TGG - chr7_1:54110741-54110760 None:intergenic 20.0%
!! AAGAAATGTATGTTAATTAC+CGG - chr7_1:54110781-54110800 None:intergenic 20.0%
!! ATTAGAAATTTATCTCATGT+TGG - chr7_1:54110977-54110996 None:intergenic 20.0%
!!! GAGTATTTGATTAGTTTTTA+TGG + chr7_1:54111337-54111356 Msa1024610:intron 20.0%
!!! ATTTGATTAGTTTTTATGGT+TGG + chr7_1:54111341-54111360 Msa1024610:intron 20.0%
!!! GATGTAAATCAATATACTTT+TGG - chr7_1:54111483-54111502 None:intergenic 20.0%
!!! AAAGTATATTGATTTACATC+AGG + chr7_1:54111483-54111502 Msa1024610:intron 20.0%
!!! TTTTTAAACATAAGATGACA+TGG - chr7_1:54111790-54111809 None:intergenic 20.0%
!!! ATTTTTCTATCACAAATGTA+TGG + chr7_1:54111812-54111831 Msa1024610:intron 20.0%
!! AAAGTCAAAATAACAAATAG+TGG - chr7_1:54112033-54112052 None:intergenic 20.0%
!!! TATTTTGACTTTTATATCGT+TGG + chr7_1:54112041-54112060 Msa1024610:intron 20.0%
!!! TGTTTTTATATAAGCTATGT+TGG - chr7_1:54112737-54112756 None:intergenic 20.0%
!!! TCTATGAATACATTTTTATC+AGG + chr7_1:54113203-54113222 Msa1024610:intron 20.0%
!! TTATTGTATTAATGCAATGT+TGG + chr7_1:54113246-54113265 Msa1024610:intron 20.0%
!! ATATTCTACATTATATACAC+CGG + chr7_1:54113494-54113513 Msa1024610:intron 20.0%
!!! TTTTGAATTATTACTCTTCA+AGG + chr7_1:54114073-54114092 Msa1024610:intron 20.0%
!!! ATGAAGCCAATAATAATTTT+CGG + chr7_1:54114181-54114200 Msa1024610:CDS 20.0%
!! AAATGAGAAATATATTCTTG+TGG + chr7_1:54114387-54114406 Msa1024610:CDS 20.0%
!! AAAACAGTTTATAGTCTATA+TGG + chr7_1:54114684-54114703 Msa1024610:intron 20.0%
!! TACTCAACAATTAAATTTGA+AGG + chr7_1:54114991-54115010 Msa1024610:CDS 20.0%
!! TCATCAATTGAAATTTCTTT+GGG - chr7_1:54115019-54115038 None:intergenic 20.0%
!! ATCATCAATTGAAATTTCTT+TGG - chr7_1:54115020-54115039 None:intergenic 20.0%
!!! CTTTTTAAATTCTAAAATGG+TGG + chr7_1:54115047-54115066 Msa1024610:exon 20.0%
!!! AAAATATTTATTTTCACCTG+AGG + chr7_1:54115183-54115202 Msa1024610:three_prime_UTR 20.0%
!! TTTCTATATATGTTAGTGTT+TGG + chr7_1:54115320-54115339 Msa1024610:three_prime_UTR 20.0%
! AAGTACACAATAACAACAAA+TGG - chr7_1:54109731-54109750 None:intergenic 25.0%
! AACATATACAAACACTAGAT+AGG - chr7_1:54110258-54110277 None:intergenic 25.0%
! CTTGATATTGCAGAATATTA+TGG - chr7_1:54110438-54110457 None:intergenic 25.0%
! CATAATATTCTGCAATATCA+AGG + chr7_1:54110436-54110455 Msa1024610:intron 25.0%
! TTAATGAACAGATACGTAAT+TGG + chr7_1:54110615-54110634 Msa1024610:intron 25.0%
! AGAAATGTATGTTAATTACC+GGG - chr7_1:54110780-54110799 None:intergenic 25.0%
!!! TGTTCCAATAAACTTTTTCA+TGG + chr7_1:54111532-54111551 Msa1024610:intron 25.0%
! TTTATGCTTTCATCTTTAGA+TGG + chr7_1:54112072-54112091 Msa1024610:intron 25.0%
! TTATGCTTTCATCTTTAGAT+GGG + chr7_1:54112073-54112092 Msa1024610:intron 25.0%
! GAATTCATGAAGAAAACTTA+CGG + chr7_1:54112144-54112163 Msa1024610:intron 25.0%
! ATTTCCATACAAAAACAAGA+AGG - chr7_1:54112319-54112338 None:intergenic 25.0%
! AAAAGATGTAGCTTATTGTT+AGG + chr7_1:54112545-54112564 Msa1024610:intron 25.0%
!! TACTAGCATAAGTACTTTTA+GGG + chr7_1:54112647-54112666 Msa1024610:intron 25.0%
!!! AGTTTTAATAGTAATCTGCT+TGG - chr7_1:54112857-54112876 None:intergenic 25.0%
! TTTGGATTTGACATTAAAAC+AGG + chr7_1:54112995-54113014 Msa1024610:intron 25.0%
! TTTGCAATTTCAGTAAATCT+GGG + chr7_1:54113068-54113087 Msa1024610:CDS 25.0%
!! AAGAATCTTGAATCAGTTTT+TGG - chr7_1:54113329-54113348 None:intergenic 25.0%
!! AAAAACTGATTCAAGATTCT+TGG + chr7_1:54113328-54113347 Msa1024610:intron 25.0%
!! AAAACTGATTCAAGATTCTT+GGG + chr7_1:54113329-54113348 Msa1024610:intron 25.0%
! TTAGGTTAAGATTATGCTAA+TGG + chr7_1:54113411-54113430 Msa1024610:intron 25.0%
!! TGTAATTTTGTCATGAATAC+CGG - chr7_1:54113516-54113535 None:intergenic 25.0%
! TTGTTTCATCATAATATCTC+AGG + chr7_1:54113540-54113559 Msa1024610:intron 25.0%
!! TGGTAAACCACATAATTTTT+AGG + chr7_1:54113620-54113639 Msa1024610:intron 25.0%
!! AAGGTATCCTAAAAATTATG+TGG - chr7_1:54113630-54113649 None:intergenic 25.0%
! AAAGCTAAAAGAATGTAACA+TGG - chr7_1:54113691-54113710 None:intergenic 25.0%
!! GTACAGTATATGATTTTACA+AGG - chr7_1:54113734-54113753 None:intergenic 25.0%
!! TGATTTGTCATTGTTAAGAT+TGG - chr7_1:54113895-54113914 None:intergenic 25.0%
! TGCAAAAAATAGTTACAACA+AGG - chr7_1:54113963-54113982 None:intergenic 25.0%
! TTACATTCAGATAAATTCAG+TGG + chr7_1:54114046-54114065 Msa1024610:intron 25.0%
!!! AGTTTTTTCAATTTTCCGAT+TGG + chr7_1:54114097-54114116 Msa1024610:intron 25.0%
!!! CTATTATCAGAGTTTTATGA+AGG + chr7_1:54114270-54114289 Msa1024610:intron 25.0%
! TTTCATAATACGTGTCATAA+TGG + chr7_1:54114331-54114350 Msa1024610:intron 25.0%
!!! GAAGTTTTATGTTTCTTTCA+AGG + chr7_1:54114432-54114451 Msa1024610:CDS 25.0%
! TAATTCTCATAAGCGAAATA+AGG - chr7_1:54114462-54114481 None:intergenic 25.0%
! TTTCGCTTATGAGAATTAAT+TGG + chr7_1:54114464-54114483 Msa1024610:intron 25.0%
! ATTATAATCTAGGTCAAACA+GGG - chr7_1:54114500-54114519 None:intergenic 25.0%
! TATTATAATCTAGGTCAAAC+AGG - chr7_1:54114501-54114520 None:intergenic 25.0%
!!! GTTGAAGATTTTAGGATAAA+TGG + chr7_1:54114552-54114571 Msa1024610:intron 25.0%
!!! CTTATTTTGATAAGCTCTTT+AGG + chr7_1:54114656-54114675 Msa1024610:intron 25.0%
!!! TTCATTTTTCTTAATGATCC+CGG + chr7_1:54115083-54115102 Msa1024610:three_prime_UTR 25.0%
! TGCTTATGCATTGAATAATT+TGG - chr7_1:54115143-54115162 None:intergenic 25.0%
CATAGAATTTGAAAACTACG+AGG - chr7_1:54109465-54109484 None:intergenic 30.0%
!! ATCTTTGAAACTGGAATGTT+TGG - chr7_1:54109493-54109512 None:intergenic 30.0%
!! AACATCATCATCTTTGAAAC+TGG - chr7_1:54109502-54109521 None:intergenic 30.0%
! TAACCTCTTTGCATGTTTTA+AGG + chr7_1:54109539-54109558 Msa1024610:intron 30.0%
!! AACCTCTTTGCATGTTTTAA+GGG + chr7_1:54109540-54109559 Msa1024610:intron 30.0%
!!! CTTATTTTGTTTAGAGGTGA+AGG + chr7_1:54109637-54109656 Msa1024610:intron 30.0%
TAATTACATTGTGTCGTATC+CGG - chr7_1:54109780-54109799 None:intergenic 30.0%
TATATGTTTCCTCGTATCAT+AGG + chr7_1:54110270-54110289 Msa1024610:intron 30.0%
CAGAATATTATGGACAAATG+TGG - chr7_1:54110428-54110447 None:intergenic 30.0%
TTAAAACCTTGCTTGTTTCA+TGG + chr7_1:54110495-54110514 Msa1024610:intron 30.0%
TTATTGCATAGATTTCAGAG+TGG + chr7_1:54110547-54110566 Msa1024610:intron 30.0%
! AAAGATTTTATTCTACCTGC+AGG + chr7_1:54110750-54110769 Msa1024610:CDS 30.0%
!! ACTTCACAGCTTTAGAAAAT+AGG + chr7_1:54110856-54110875 Msa1024610:intron 30.0%
TGAGCAATGAACCTATTAAA+GGG - chr7_1:54110907-54110926 None:intergenic 30.0%
ATGAGCAATGAACCTATTAA+AGG - chr7_1:54110908-54110927 None:intergenic 30.0%
! CATGTTGGATAATATTTCTG+TGG - chr7_1:54110962-54110981 None:intergenic 30.0%
ATACAATTAGGACTGAACTA+AGG + chr7_1:54110998-54111017 Msa1024610:intron 30.0%
TACAATTAGGACTGAACTAA+GGG + chr7_1:54110999-54111018 Msa1024610:intron 30.0%
! CTTCATTGATTAGATGAAGT+TGG + chr7_1:54111121-54111140 Msa1024610:intron 30.0%
ATTGATTAGATGAAGTTGGA+GGG + chr7_1:54111125-54111144 Msa1024610:intron 30.0%
ATAGAGAATGGTAAGTAAAC+AGG - chr7_1:54111154-54111173 None:intergenic 30.0%
CCTTCCATGAAAAAGTTTAT+TGG - chr7_1:54111539-54111558 None:intergenic 30.0%
!!! CCAATAAACTTTTTCATGGA+AGG + chr7_1:54111536-54111555 Msa1024610:intron 30.0%
!! AAAGTTGATAATTCACCTGA+TGG - chr7_1:54111939-54111958 None:intergenic 30.0%
!!! TCACTGTTATTAGTTTTTCC+AGG + chr7_1:54112204-54112223 Msa1024610:intron 30.0%
!!! TGTTATTAGTTTTTCCAGGT+GGG + chr7_1:54112208-54112227 Msa1024610:intron 30.0%
ATCTCTTGGAAATCTTACTA+AGG + chr7_1:54112445-54112464 Msa1024610:CDS 30.0%
TCTATTTAAACACGTGAAAC+TGG + chr7_1:54112476-54112495 Msa1024610:intron 30.0%
! CTACTAGCATAAGTACTTTT+AGG + chr7_1:54112646-54112665 Msa1024610:intron 30.0%
TGTGAATTGATAGAGAGAAA+AGG - chr7_1:54112927-54112946 None:intergenic 30.0%
! CATACAGTTGTGTAATGTTT+TGG + chr7_1:54112977-54112996 Msa1024610:intron 30.0%
GATTTACTGAAATTGCAAAG+TGG - chr7_1:54113067-54113086 None:intergenic 30.0%
CTTTGCAATTTCAGTAAATC+TGG + chr7_1:54113067-54113086 Msa1024610:CDS 30.0%
! TTGAAAGCATGAAACTAACA+AGG - chr7_1:54113160-54113179 None:intergenic 30.0%
TTGTATTAATGCAATGTTGG+AGG + chr7_1:54113249-54113268 Msa1024610:intron 30.0%
! TAATTGATTCTCTGATCCAA+TGG + chr7_1:54113354-54113373 Msa1024610:intron 30.0%
! AATTGATTCTCTGATCCAAT+GGG + chr7_1:54113355-54113374 Msa1024610:intron 30.0%
GTTAAGATTATGCTAATGGT+AGG + chr7_1:54113415-54113434 Msa1024610:intron 30.0%
TAATATCTCAGGAAGAAGTT+TGG + chr7_1:54113551-54113570 Msa1024610:intron 30.0%
AATATCTCAGGAAGAAGTTT+GGG + chr7_1:54113552-54113571 Msa1024610:intron 30.0%
! GATACCTTTATTTCTTATCG+TGG + chr7_1:54113642-54113661 Msa1024610:intron 30.0%
! AGTATATGATTTTACAAGGC+CGG - chr7_1:54113730-54113749 None:intergenic 30.0%
ATACTGTACTTTCATCAACT+TGG + chr7_1:54113745-54113764 Msa1024610:CDS 30.0%
TTTGTCATTGTTAAGATTGG+TGG - chr7_1:54113892-54113911 None:intergenic 30.0%
TCGTTCATTAGAACAAAGAT+CGG - chr7_1:54113924-54113943 None:intergenic 30.0%
GAATTTATCTGAATGTAACC+TGG - chr7_1:54114044-54114063 None:intergenic 30.0%
TTTCCGATTGGAATTATTTC+AGG + chr7_1:54114109-54114128 Msa1024610:intron 30.0%
CATCCTGAAATAATTCCAAT+CGG - chr7_1:54114115-54114134 None:intergenic 30.0%
AGGAAGAGAATATATTAGTG+TGG + chr7_1:54114149-54114168 Msa1024610:CDS 30.0%
GGTGAACCGAAAATTATTAT+TGG - chr7_1:54114190-54114209 None:intergenic 30.0%
! AATGGAGAGATCTCATTTTA+TGG + chr7_1:54114228-54114247 Msa1024610:CDS 30.0%
! TCGTTACAGTTGAAGATTTT+AGG + chr7_1:54114544-54114563 Msa1024610:intron 30.0%
AGTACTAGTTGAACTTATGA+AGG + chr7_1:54114802-54114821 Msa1024610:intron 30.0%
! ACCTATTTTCCAATTCCATT+AGG - chr7_1:54114931-54114950 None:intergenic 30.0%
AAAAGTTGAAAGATGCTGAA+TGG + chr7_1:54114966-54114985 Msa1024610:CDS 30.0%
AAAGTTGAAAGATGCTGAAT+GGG + chr7_1:54114967-54114986 Msa1024610:CDS 30.0%
!! TCATTTTTCTTAATGATCCC+GGG + chr7_1:54115084-54115103 Msa1024610:three_prime_UTR 30.0%
! TCAATTTTCAGAATAACCTC+AGG - chr7_1:54115202-54115221 None:intergenic 30.0%
! CTACTTAATCATCTTTGAAG+AGG - chr7_1:54115260-54115279 None:intergenic 30.0%
TCTTTCTGCATTTCAAGCTT+TGG + chr7_1:54109289-54109308 Msa1024610:five_prime_UTR 35.0%
!! GCATTTCAAGCTTTGGATAT+TGG + chr7_1:54109296-54109315 Msa1024610:five_prime_UTR 35.0%
! TTTGAAACTGGAATGTTTGG+AGG - chr7_1:54109490-54109509 None:intergenic 35.0%
AACCCTTAAAACATGCAAAG+AGG - chr7_1:54109545-54109564 None:intergenic 35.0%
TTAGAGGTGAAGGATTATCA+AGG + chr7_1:54109647-54109666 Msa1024610:intron 35.0%
TAGAGGTGAAGGATTATCAA+GGG + chr7_1:54109648-54109667 Msa1024610:intron 35.0%
AGGATTATCAAGGGTGATAT+TGG + chr7_1:54109657-54109676 Msa1024610:CDS 35.0%
ATTATCAAGGGTGATATTGG+TGG + chr7_1:54109660-54109679 Msa1024610:CDS 35.0%
GTAATTACCCTGACACATAT+CGG + chr7_1:54109793-54109812 Msa1024610:intron 35.0%
!! CTTCTGAAGTTTGGAGATTA+TGG + chr7_1:54109892-54109911 Msa1024610:intron 35.0%
! AACACTTGGTGGTACTAAAT+AGG + chr7_1:54110078-54110097 Msa1024610:intron 35.0%
! ACACTTGGTGGTACTAAATA+GGG + chr7_1:54110079-54110098 Msa1024610:intron 35.0%
!! AAGAAGTATCGATGCTACAT+AGG - chr7_1:54110175-54110194 None:intergenic 35.0%
! GCATCGATACTTCTTATAGA+AGG + chr7_1:54110180-54110199 Msa1024610:intron 35.0%
! CTTCTTATAGAAGGTGTATC+TGG + chr7_1:54110189-54110208 Msa1024610:intron 35.0%
! GCAAACACAATCTAAAACCA+TGG - chr7_1:54110341-54110360 None:intergenic 35.0%
TCAAGGATCACGAATAAATG+CGG + chr7_1:54110453-54110472 Msa1024610:intron 35.0%
CATATTCCATGAAACAAGCA+AGG - chr7_1:54110504-54110523 None:intergenic 35.0%
! ATTGCAAACCATTCTAGTTG+AGG + chr7_1:54110650-54110669 Msa1024610:CDS 35.0%
TGCAACATCTTCCCTTTAAT+AGG + chr7_1:54110893-54110912 Msa1024610:intron 35.0%
! CATTGATTAGATGAAGTTGG+AGG + chr7_1:54111124-54111143 Msa1024610:intron 35.0%
TACCATTCTCTATATGATGC+AGG + chr7_1:54111161-54111180 Msa1024610:intron 35.0%
ATCCTGCATCATATAGAGAA+TGG - chr7_1:54111166-54111185 None:intergenic 35.0%
! TTCATGGAAGGTTTTACTTG+TGG + chr7_1:54111548-54111567 Msa1024610:intron 35.0%
TTGAATGTAACCACACATGT+TGG + chr7_1:54111666-54111685 Msa1024610:intron 35.0%
AACATAAGATGACATGGTGA+AGG - chr7_1:54111784-54111803 None:intergenic 35.0%
!!! CTGTTATTAGTTTTTCCAGG+TGG + chr7_1:54112207-54112226 Msa1024610:intron 35.0%
! GCATACATTCTCCATTGTTT+TGG - chr7_1:54112261-54112280 None:intergenic 35.0%
AGAATGTATGCAGACTTCAT+TGG + chr7_1:54112270-54112289 Msa1024610:CDS 35.0%
!!! CATGCCTTCTTGTTTTTGTA+TGG + chr7_1:54112312-54112331 Msa1024610:intron 35.0%
TAAAGAAACCCTTACCACAA+TGG + chr7_1:54112359-54112378 Msa1024610:intron 35.0%
ATGAGATACCATTGTGGTAA+GGG - chr7_1:54112370-54112389 None:intergenic 35.0%
! AAAGTATCCGGGATATAACT+GGG - chr7_1:54112414-54112433 None:intergenic 35.0%
AATTAGCTAAAAACAGCCGA+TGG - chr7_1:54112702-54112721 None:intergenic 35.0%
TTAAAACAGGCTATAGCAAG+AGG + chr7_1:54113008-54113027 Msa1024610:intron 35.0%
! CTTTGAATCACTCTAGAAGA+AGG - chr7_1:54113044-54113063 None:intergenic 35.0%
AATTTCAGTAAATCTGGGAG+AGG + chr7_1:54113073-54113092 Msa1024610:CDS 35.0%
!! AAGCTATTGATGACGCAATT+AGG + chr7_1:54113393-54113412 Msa1024610:intron 35.0%
! GTATATGATTTTACAAGGCC+GGG - chr7_1:54113729-54113748 None:intergenic 35.0%
CATCAACTTGGTTGATTGTA+CGG + chr7_1:54113757-54113776 Msa1024610:CDS 35.0%
TTCAGTTCTCCAGTTTAACA+CGG + chr7_1:54113812-54113831 Msa1024610:CDS 35.0%
TTCATTAGAACAAAGATCGG+TGG - chr7_1:54113921-54113940 None:intergenic 35.0%
TGGAATTATTTCAGGATGCT+TGG + chr7_1:54114117-54114136 Msa1024610:intron 35.0%
ATTCCATCCATCTTGTCTAA+GGG - chr7_1:54114211-54114230 None:intergenic 35.0%
ATCTTCAACTGTAACGATCA+TGG - chr7_1:54114541-54114560 None:intergenic 35.0%
! TGAGTACTTGTGACACTTTT+TGG + chr7_1:54114615-54114634 Msa1024610:intron 35.0%
!! GAGTACTTGTGACACTTTTT+GGG + chr7_1:54114616-54114635 Msa1024610:intron 35.0%
CTAGTTGAACTTATGAAGGT+TGG + chr7_1:54114806-54114825 Msa1024610:intron 35.0%
!! ATTCTGGCTTAGTGAGAATT+GGG + chr7_1:54114868-54114887 Msa1024610:CDS 35.0%
GCCTAATGGAATTGGAAAAT+AGG + chr7_1:54114927-54114946 Msa1024610:CDS 35.0%
! CATTTTTCTTAATGATCCCG+GGG + chr7_1:54115085-54115104 Msa1024610:three_prime_UTR 35.0%
TAATTTGGCTGATCACAGTT+TGG - chr7_1:54115128-54115147 None:intergenic 35.0%
! TAACAGATCAGTGCCTTATT+TGG + chr7_1:54115354-54115373 Msa1024610:three_prime_UTR 35.0%
GCAAGGAATCTTTCCAAATA+AGG - chr7_1:54115370-54115389 None:intergenic 35.0%
TTGGTGGAGAGATATAGCAA+TGG + chr7_1:54109676-54109695 Msa1024610:CDS 40.0%
ATAGCAATGGTACTGCTAAG+AGG + chr7_1:54109689-54109708 Msa1024610:CDS 40.0%
GTTCTATGAAACACAGACAC+CGG + chr7_1:54109758-54109777 Msa1024610:intron 40.0%
TTAGTGTCCGATATGTGTCA+GGG - chr7_1:54109803-54109822 None:intergenic 40.0%
!! GGTTGTTGTCTTCTGAAGTT+TGG + chr7_1:54109883-54109902 Msa1024610:intron 40.0%
AGCCTCTATTTGACAACACT+TGG + chr7_1:54110064-54110083 Msa1024610:intron 40.0%
! CACCAAGTGTTGTCAAATAG+AGG - chr7_1:54110069-54110088 None:intergenic 40.0%
CTCTATTTGACAACACTTGG+TGG + chr7_1:54110067-54110086 Msa1024610:intron 40.0%
ATAGGGTGTGGTAGAACAAT+AGG + chr7_1:54110096-54110115 Msa1024610:intron 40.0%
TAGGGTGTGGTAGAACAATA+GGG + chr7_1:54110097-54110116 Msa1024610:intron 40.0%
TAGCTGATACCTATGATACG+AGG - chr7_1:54110282-54110301 None:intergenic 40.0%
! CAATCTAAAACCATGGCAAC+AGG - chr7_1:54110334-54110353 None:intergenic 40.0%
!!! CTATTTTGACCAAAACGCCA+AGG + chr7_1:54110372-54110391 Msa1024610:intron 40.0%
AAATGTGGCTGCAAATGCAT+TGG - chr7_1:54110413-54110432 None:intergenic 40.0%
CAAGGATCACGAATAAATGC+GGG + chr7_1:54110454-54110473 Msa1024610:intron 40.0%
CTCCTGATAAAAGACTATCC+TGG + chr7_1:54110712-54110731 Msa1024610:CDS 40.0%
! AGCCAGGATAGTCTTTTATC+AGG - chr7_1:54110717-54110736 None:intergenic 40.0%
TTTAATCCTATCTGGAAGCC+AGG - chr7_1:54110733-54110752 None:intergenic 40.0%
CAGTCGATGTTTCACATTCA+CGG + chr7_1:54111078-54111097 Msa1024610:intron 40.0%
ACATATCCATCCAGTCACAT+TGG - chr7_1:54111234-54111253 None:intergenic 40.0%
TAGGAGACTTGAAGTGACTA+TGG - chr7_1:54111261-54111280 None:intergenic 40.0%
AGTCACTTCAAGTCTCCTAA+AGG + chr7_1:54111262-54111281 Msa1024610:CDS 40.0%
AGCAAGAATGACATGCCTTT+AGG - chr7_1:54111280-54111299 None:intergenic 40.0%
ACTCACAATGCAACATTCGT+GGG - chr7_1:54111321-54111340 None:intergenic 40.0%
TACTCACAATGCAACATTCG+TGG - chr7_1:54111322-54111341 None:intergenic 40.0%
TCTCATTGTCCATGTCAATG+AGG + chr7_1:54111415-54111434 Msa1024610:intron 40.0%
GGAACATATACAACGACTAG+AGG - chr7_1:54111518-54111537 None:intergenic 40.0%
GCATTGCACTTCTGATTGAA+GGG - chr7_1:54111721-54111740 None:intergenic 40.0%
AGCATTGCACTTCTGATTGA+AGG - chr7_1:54111722-54111741 None:intergenic 40.0%
!! GTGAAGGGGAATTTTAACAC+AGG - chr7_1:54111858-54111877 None:intergenic 40.0%
TAAAATTCCCCTTCACTTGC+AGG + chr7_1:54111862-54111881 Msa1024610:intron 40.0%
CATCTTTAGATGGGTCTCAA+AGG + chr7_1:54112082-54112101 Msa1024610:intron 40.0%
TTTAGATGGGTCTCAAAGGA+CGG + chr7_1:54112086-54112105 Msa1024610:intron 40.0%
TCGACGATGATCCAAAACAA+TGG + chr7_1:54112247-54112266 Msa1024610:CDS 40.0%
CATGAGATACCATTGTGGTA+AGG - chr7_1:54112371-54112390 None:intergenic 40.0%
!! GAAAGTATCCGGGATATAAC+TGG - chr7_1:54112415-54112434 None:intergenic 40.0%
!! TGCCAAAGGAAGAAAGTATC+CGG - chr7_1:54112426-54112445 None:intergenic 40.0%
TTTCTTCCTTTGGCATCTCT+TGG + chr7_1:54112431-54112450 Msa1024610:CDS 40.0%
AGATTTCCAAGAGATGCCAA+AGG - chr7_1:54112440-54112459 None:intergenic 40.0%
!! GATAGGTTCTAGAAGGTTCT+TGG + chr7_1:54112515-54112534 Msa1024610:intron 40.0%
AAAGCCTTCTTAGCAAACCT+TGG + chr7_1:54112592-54112611 Msa1024610:intron 40.0%
AAGCCTTCTTAGCAAACCTT+GGG + chr7_1:54112593-54112612 Msa1024610:intron 40.0%
!! GTACTTTTAGGGAGAGCTTA+TGG + chr7_1:54112658-54112677 Msa1024610:intron 40.0%
GAGCTTATGGAAACCACTTA+TGG + chr7_1:54112671-54112690 Msa1024610:intron 40.0%
AAGCTATGTTGGAGAACTCA+AGG - chr7_1:54112726-54112745 None:intergenic 40.0%
TTGGGAAGTTGTAGCTCAAT+TGG + chr7_1:54113570-54113589 Msa1024610:CDS 40.0%
GAAGTTGTAGCTCAATTGGT+TGG + chr7_1:54113574-54113593 Msa1024610:CDS 40.0%
!! TCAATTGGTTGGTCTTGGTT+TGG + chr7_1:54113585-54113604 Msa1024610:CDS 40.0%
!! CAATTGGTTGGTCTTGGTTT+GGG + chr7_1:54113586-54113605 Msa1024610:CDS 40.0%
! TGGTTTGGGCATATTGATAC+TGG + chr7_1:54113600-54113619 Msa1024610:CDS 40.0%
GCTGCCACGATAAGAAATAA+AGG - chr7_1:54113649-54113668 None:intergenic 40.0%
GAATGTAACATGGCAACCAA+CGG - chr7_1:54113681-54113700 None:intergenic 40.0%
!!! TTCTTTTAGCTTTTGACCGC+AGG + chr7_1:54113698-54113717 Msa1024610:intron 40.0%
TTGTACGGCTTCTTCATCTT+TGG + chr7_1:54113772-54113791 Msa1024610:CDS 40.0%
ACATGCTTACCGTGTTAAAC+TGG - chr7_1:54113824-54113843 None:intergenic 40.0%
! GTTTTACATTCCACTGTTCC+AGG + chr7_1:54114023-54114042 Msa1024610:CDS 40.0%
CATTCCATCCATCTTGTCTA+AGG - chr7_1:54114212-54114231 None:intergenic 40.0%
CTTAGACAAGATGGATGGAA+TGG + chr7_1:54114210-54114229 Msa1024610:CDS 40.0%
TCAACTGTAACGATCATGGA+AGG - chr7_1:54114537-54114556 None:intergenic 40.0%
!! CATTCTGGCTTAGTGAGAAT+TGG + chr7_1:54114867-54114886 Msa1024610:CDS 40.0%
TAGTGAGAATTGGGAGAGAA+AGG + chr7_1:54114877-54114896 Msa1024610:CDS 40.0%
AGTGAGAATTGGGAGAGAAA+GGG + chr7_1:54114878-54114897 Msa1024610:CDS 40.0%
TTCCAATTCCATTAGGCTAC+TGG - chr7_1:54114924-54114943 None:intergenic 40.0%
GTAGTGCTTTCTATACATGC+AGG + chr7_1:54115286-54115305 Msa1024610:three_prime_UTR 40.0%
GTTAGTGTCCGATATGTGTC+AGG - chr7_1:54109804-54109823 None:intergenic 45.0%
TGGTGGTACTAAATAGGGTG+TGG + chr7_1:54110084-54110103 Msa1024610:intron 45.0%
! ACACAAAAGCCTTGGCGTTT+TGG - chr7_1:54110384-54110403 None:intergenic 45.0%
GGCAGTAAACACAAAAGCCT+TGG - chr7_1:54110392-54110411 None:intergenic 45.0%
! GCAAACCATTCTAGTTGAGG+AGG + chr7_1:54110653-54110672 Msa1024610:CDS 45.0%
CCTATCCTCCTCAACTAGAA+TGG - chr7_1:54110661-54110680 None:intergenic 45.0%
! CCATTCTAGTTGAGGAGGAT+AGG + chr7_1:54110658-54110677 Msa1024610:CDS 45.0%
AGGATAGGTCTCTGCAAAAC+AGG + chr7_1:54110673-54110692 Msa1024610:CDS 45.0%
AGGTCTCTGCAAAACAGGTT+TGG + chr7_1:54110678-54110697 Msa1024610:CDS 45.0%
GGTCTCTGCAAAACAGGTTT+GGG + chr7_1:54110679-54110698 Msa1024610:CDS 45.0%
GTCTCTGCAAAACAGGTTTG+GGG + chr7_1:54110680-54110699 Msa1024610:CDS 45.0%
TCCATCCAGTCACATTGGTA+GGG - chr7_1:54111229-54111248 None:intergenic 45.0%
ATCCATCCAGTCACATTGGT+AGG - chr7_1:54111230-54111249 None:intergenic 45.0%
!! TATGGTTGGTTTGTGCGACT+TGG + chr7_1:54111355-54111374 Msa1024610:intron 45.0%
GTCCATGTCAATGAGGCTTA+CGG + chr7_1:54111422-54111441 Msa1024610:intron 45.0%
CAACCTATGAAGCACATGCA+CGG + chr7_1:54111586-54111605 Msa1024610:intron 45.0%
TTGTCGGATACCAACATGTG+TGG - chr7_1:54111679-54111698 None:intergenic 45.0%
TGTTGGTATCCGACAACAAC+CGG + chr7_1:54111683-54111702 Msa1024610:intron 45.0%
!! GTTGGTGTTGGTTCTTTCTC+TGG + chr7_1:54111887-54111906 Msa1024610:CDS 45.0%
TGCTGCATGAGATACCATTG+TGG - chr7_1:54112376-54112395 None:intergenic 45.0%
CTGACAACCCAGTTATATCC+CGG + chr7_1:54112404-54112423 Msa1024610:CDS 45.0%
TCCCGGATACTTTCTTCCTT+TGG + chr7_1:54112421-54112440 Msa1024610:CDS 45.0%
!! GCCAAAGGAAGAAAGTATCC+GGG - chr7_1:54112425-54112444 None:intergenic 45.0%
AACTGGACATAGTCTTTGCC+AGG + chr7_1:54112493-54112512 Msa1024610:intron 45.0%
GACATAGTCTTTGCCAGGAT+AGG + chr7_1:54112498-54112517 Msa1024610:intron 45.0%
!! TTGCCAGGATAGGTTCTAGA+AGG + chr7_1:54112508-54112527 Msa1024610:intron 45.0%
!! GAACCTTCTAGAACCTATCC+TGG - chr7_1:54112514-54112533 None:intergenic 45.0%
AGCCTTCTTAGCAAACCTTG+GGG + chr7_1:54112594-54112613 Msa1024610:intron 45.0%
!! AACCCCAAGGTTTGCTAAGA+AGG - chr7_1:54112599-54112618 None:intergenic 45.0%
! AGCAAACCTTGGGGTTTGTT+CGG + chr7_1:54112603-54112622 Msa1024610:intron 45.0%
ACCACTTATGGCATGTCCAT+CGG + chr7_1:54112683-54112702 Msa1024610:intron 45.0%
CCTACTTACATGTGACCCAT+TGG - chr7_1:54113373-54113392 None:intergenic 45.0%
CCAATGGGTCACATGTAAGT+AGG + chr7_1:54113370-54113389 Msa1024610:intron 45.0%
!! GTAGCTCAATTGGTTGGTCT+TGG + chr7_1:54113580-54113599 Msa1024610:CDS 45.0%
ACGGTAAGCATGTACTGTGT+GGG + chr7_1:54113831-54113850 Msa1024610:intron 45.0%
! ATGTACTGTGTGGGCTAATG+TGG + chr7_1:54113840-54113859 Msa1024610:intron 45.0%
TATTAAGCGTGCTCGCATAC+TGG + chr7_1:54113989-54114008 Msa1024610:CDS 45.0%
CTGAATGTAACCTGGAACAG+TGG - chr7_1:54114036-54114055 None:intergenic 45.0%
AGGATGCTTGGATTGCAACA+AGG + chr7_1:54114129-54114148 Msa1024610:intron 45.0%
TCACCCTTAGACAAGATGGA+TGG + chr7_1:54114205-54114224 Msa1024610:CDS 45.0%
TACGTGTCATAATGGTGTGC+AGG + chr7_1:54114339-54114358 Msa1024610:intron 45.0%
TCATAATGGTGTGCAGGTAG+AGG + chr7_1:54114345-54114364 Msa1024610:intron 45.0%
TCTCGGTATTGCGAAGCATA+TGG + chr7_1:54114840-54114859 Msa1024610:CDS 45.0%
GAAGCATATGGCAGACATTC+TGG + chr7_1:54114852-54114871 Msa1024610:CDS 45.0%
TCAACTTGCCAGTAGCCTAA+TGG + chr7_1:54114913-54114932 Msa1024610:CDS 45.0%
TGCCAGTAGCCTAATGGAAT+TGG + chr7_1:54114919-54114938 Msa1024610:CDS 45.0%
! ATGTGAGAGCTAGCTTAGCA+AGG - chr7_1:54115387-54115406 None:intergenic 45.0%
!! ATAATTATTTATTCTAAATT+TGG + chr7_1:54114305-54114324 Msa1024610:intron 5.0%
!! TAATTATTTATTCTAAATTT+GGG + chr7_1:54114306-54114325 Msa1024610:intron 5.0%
AACACGGGTCAGGTCAAATC+GGG + chr7_1:54109236-54109255 Msa1024610:five_prime_UTR 50.0%
ATGCAGAAAGAGCCACGAGT+CGG - chr7_1:54109280-54109299 None:intergenic 50.0%
GTTAGCAGCAGCAATGCTTG+TGG + chr7_1:54109862-54109881 Msa1024610:intron 50.0%
GCTATAGCGCTATAGTGCAG+CGG - chr7_1:54110136-54110155 None:intergenic 50.0%
!! CATGTCAGTGTCGACACATG+TGG + chr7_1:54110221-54110240 Msa1024610:intron 50.0%
ACCATGGCAACAGGCAAACA+CGG - chr7_1:54110325-54110344 None:intergenic 50.0%
GACTATCCTGGCTTCCAGAT+AGG + chr7_1:54110724-54110743 Msa1024610:CDS 50.0%
ATTCTACCTGCAGGCTTTCC+CGG + chr7_1:54110759-54110778 Msa1024610:CDS 50.0%
TAATTACCGGGAAAGCCTGC+AGG - chr7_1:54110768-54110787 None:intergenic 50.0%
CAGTTCCCTACCAATGTGAC+TGG + chr7_1:54111221-54111240 Msa1024610:CDS 50.0%
TCCCTACCAATGTGACTGGA+TGG + chr7_1:54111225-54111244 Msa1024610:CDS 50.0%
TGTCCGTGCATGTGCTTCAT+AGG - chr7_1:54111592-54111611 None:intergenic 50.0%
TGACGTGTCAGTATCCCATC+CGG - chr7_1:54111615-54111634 None:intergenic 50.0%
GTCAAGTGTCCGGTTGTTGT+CGG - chr7_1:54111695-54111714 None:intergenic 50.0%
ACAACAACCGGACACTTGAC+AGG + chr7_1:54111695-54111714 Msa1024610:intron 50.0%
ACCAACAGCCTGCAAGTGAA+GGG - chr7_1:54111873-54111892 None:intergenic 50.0%
! GGGCGCTTATTCATTGGTCT+GGG + chr7_1:54112122-54112141 Msa1024610:intron 50.0%
! GTTTTTCCAGGTGGGCGATT+TGG + chr7_1:54112216-54112235 Msa1024610:intron 50.0%
AGATTTCCAAATCGCCCACC+TGG - chr7_1:54112225-54112244 None:intergenic 50.0%
! ACTTCATTGGCAGTGCTGGA+AGG + chr7_1:54112283-54112302 Msa1024610:CDS 50.0%
GTCAATCCGAACAAACCCCA+AGG - chr7_1:54112612-54112631 None:intergenic 50.0%
CATGGCAACCAACGGTATTG+TGG - chr7_1:54113673-54113692 None:intergenic 50.0%
! TTTTGACCGCAGGATACACC+CGG + chr7_1:54113708-54113727 Msa1024610:intron 50.0%
CACGGTAAGCATGTACTGTG+TGG + chr7_1:54113830-54113849 Msa1024610:intron 50.0%
CGGTTCACCCTTAGACAAGA+TGG + chr7_1:54114201-54114220 Msa1024610:CDS 50.0%
GGTTGGAGCTACAAGTGTCT+CGG + chr7_1:54114823-54114842 Msa1024610:intron 50.0%
GATCAACTCTCGAAAACCCC+GGG - chr7_1:54115104-54115123 None:intergenic 50.0%
CGATCAACTCTCGAAAACCC+CGG - chr7_1:54115105-54115124 None:intergenic 50.0%
GAAAGAGCCACGAGTCGGAT+CGG - chr7_1:54109275-54109294 None:intergenic 55.0%
GGCCGTAAGCCTCATTGACA+TGG - chr7_1:54111427-54111446 None:intergenic 55.0%
TGAAGCACATGCACGGACAC+CGG + chr7_1:54111593-54111612 Msa1024610:intron 55.0%
TGAAGGGCCTGTCAAGTGTC+CGG - chr7_1:54111705-54111724 None:intergenic 55.0%
CCAACAGCCTGCAAGTGAAG+GGG - chr7_1:54111872-54111891 None:intergenic 55.0%
CACCAACAGCCTGCAAGTGA+AGG - chr7_1:54111874-54111893 None:intergenic 55.0%
CACTTGCAGGCTGTTGGTGT+TGG + chr7_1:54111875-54111894 Msa1024610:intron 55.0%
TGGGTCTCAAAGGACGGCAT+TGG + chr7_1:54112092-54112111 Msa1024610:CDS 55.0%
! AAGGACGGCATTGGAGCTGT+CGG + chr7_1:54112101-54112120 Msa1024610:CDS 55.0%
GCTGTCGGGCGCTTATTCAT+TGG + chr7_1:54112116-54112135 Msa1024610:CDS 55.0%
CGGGCGCTTATTCATTGGTC+TGG + chr7_1:54112121-54112140 Msa1024610:intron 55.0%
GCAGACTTCATTGGCAGTGC+TGG + chr7_1:54112279-54112298 Msa1024610:CDS 55.0%
GCCGATGGACATGCCATAAG+TGG - chr7_1:54112687-54112706 None:intergenic 55.0%
TCTGGGAGAGGTAGCAGCAA+AGG + chr7_1:54113085-54113104 Msa1024610:CDS 55.0%
TGGCAGCACCACAATACCGT+TGG + chr7_1:54113662-54113681 Msa1024610:intron 55.0%
! AGAAGCTCCGATCCGACTCG+TGG + chr7_1:54109265-54109284 Msa1024610:five_prime_UTR 60.0%
GCCGTGTTTGCCTGTTGCCA+TGG + chr7_1:54110321-54110340 Msa1024610:intron 60.0%
CACATGCACGGACACCGGAT+GGG + chr7_1:54111598-54111617 Msa1024610:intron 60.0%
CCCCTTCACTTGCAGGCTGT+TGG + chr7_1:54111869-54111888 Msa1024610:intron 60.0%
AGCAGCAGAAGCAGCTGCTG+TGG - chr7_1:54111915-54111934 None:intergenic 60.0%
CTGCTTCTGCTGCTGCCATC+AGG + chr7_1:54111921-54111940 Msa1024610:CDS 60.0%
! AGGACGGCATTGGAGCTGTC+GGG + chr7_1:54112102-54112121 Msa1024610:CDS 60.0%
ACAAGGCCGGGTGTATCCTG+CGG - chr7_1:54113717-54113736 None:intergenic 60.0%
GCACATGCACGGACACCGGA+TGG + chr7_1:54111597-54111616 Msa1024610:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 54109236 54115438 54109236 ID=Msa1024610;Name=Msa1024610
chr7_1 mRNA 54109236 54115438 54109236 ID=Msa1024610-mRNA-1;Parent=Msa1024610;Name=Msa1024610-mRNA-1;_AED=0.16;_eAED=0.16;_QI=142|1|1|1|1|1|15|384|497
chr7_1 exon 54109236 54109529 54109236 ID=Msa1024610-mRNA-1:exon:10737;Parent=Msa1024610-mRNA-1
chr7_1 exon 54109651 54109710 54109651 ID=Msa1024610-mRNA-1:exon:10738;Parent=Msa1024610-mRNA-1
chr7_1 exon 54110626 54110780 54110626 ID=Msa1024610-mRNA-1:exon:10739;Parent=Msa1024610-mRNA-1
chr7_1 exon 54111183 54111283 54111183 ID=Msa1024610-mRNA-1:exon:10740;Parent=Msa1024610-mRNA-1
chr7_1 exon 54111884 54111942 54111884 ID=Msa1024610-mRNA-1:exon:10741;Parent=Msa1024610-mRNA-1
chr7_1 exon 54112091 54112137 54112091 ID=Msa1024610-mRNA-1:exon:10742;Parent=Msa1024610-mRNA-1
chr7_1 exon 54112226 54112304 54112226 ID=Msa1024610-mRNA-1:exon:10743;Parent=Msa1024610-mRNA-1
chr7_1 exon 54112394 54112466 54112394 ID=Msa1024610-mRNA-1:exon:10744;Parent=Msa1024610-mRNA-1
chr7_1 exon 54113017 54113106 54113017 ID=Msa1024610-mRNA-1:exon:10745;Parent=Msa1024610-mRNA-1
chr7_1 exon 54113562 54113621 54113562 ID=Msa1024610-mRNA-1:exon:10746;Parent=Msa1024610-mRNA-1
chr7_1 exon 54113720 54113833 54113720 ID=Msa1024610-mRNA-1:exon:10747;Parent=Msa1024610-mRNA-1
chr7_1 exon 54113984 54114044 54113984 ID=Msa1024610-mRNA-1:exon:10748;Parent=Msa1024610-mRNA-1
chr7_1 exon 54114131 54114249 54114131 ID=Msa1024610-mRNA-1:exon:10749;Parent=Msa1024610-mRNA-1
chr7_1 exon 54114361 54114453 54114361 ID=Msa1024610-mRNA-1:exon:10750;Parent=Msa1024610-mRNA-1
chr7_1 exon 54114824 54115438 54114824 ID=Msa1024610-mRNA-1:exon:10751;Parent=Msa1024610-mRNA-1
chr7_1 five_prime_UTR 54109236 54109377 54109236 ID=Msa1024610-mRNA-1:five_prime_utr;Parent=Msa1024610-mRNA-1
chr7_1 CDS 54109378 54109529 54109378 ID=Msa1024610-mRNA-1:cds;Parent=Msa1024610-mRNA-1
chr7_1 CDS 54109651 54109710 54109651 ID=Msa1024610-mRNA-1:cds;Parent=Msa1024610-mRNA-1
chr7_1 CDS 54110626 54110780 54110626 ID=Msa1024610-mRNA-1:cds;Parent=Msa1024610-mRNA-1
chr7_1 CDS 54111183 54111283 54111183 ID=Msa1024610-mRNA-1:cds;Parent=Msa1024610-mRNA-1
chr7_1 CDS 54111884 54111942 54111884 ID=Msa1024610-mRNA-1:cds;Parent=Msa1024610-mRNA-1
chr7_1 CDS 54112091 54112137 54112091 ID=Msa1024610-mRNA-1:cds;Parent=Msa1024610-mRNA-1
chr7_1 CDS 54112226 54112304 54112226 ID=Msa1024610-mRNA-1:cds;Parent=Msa1024610-mRNA-1
chr7_1 CDS 54112394 54112466 54112394 ID=Msa1024610-mRNA-1:cds;Parent=Msa1024610-mRNA-1
chr7_1 CDS 54113017 54113106 54113017 ID=Msa1024610-mRNA-1:cds;Parent=Msa1024610-mRNA-1
chr7_1 CDS 54113562 54113621 54113562 ID=Msa1024610-mRNA-1:cds;Parent=Msa1024610-mRNA-1
chr7_1 CDS 54113720 54113833 54113720 ID=Msa1024610-mRNA-1:cds;Parent=Msa1024610-mRNA-1
chr7_1 CDS 54113984 54114044 54113984 ID=Msa1024610-mRNA-1:cds;Parent=Msa1024610-mRNA-1
chr7_1 CDS 54114131 54114249 54114131 ID=Msa1024610-mRNA-1:cds;Parent=Msa1024610-mRNA-1
chr7_1 CDS 54114361 54114453 54114361 ID=Msa1024610-mRNA-1:cds;Parent=Msa1024610-mRNA-1
chr7_1 CDS 54114824 54115054 54114824 ID=Msa1024610-mRNA-1:cds;Parent=Msa1024610-mRNA-1
chr7_1 three_prime_UTR 54115055 54115438 54115055 ID=Msa1024610-mRNA-1:three_prime_utr;Parent=Msa1024610-mRNA-1
Gene Sequence

>Msa1024610

ATGTCTCAAACTTTGCAATTTTCATTATCTTCAACTGCATTCAATTCTTCTTCACTGAATTTGAAGAAGTTGAAGAAAGTTAAGCCTCGTAGTTTTCAAATTCTATGCTCCTCCAAACATTCCAGTTTCAAAGATGATGATGTTAATAAAGGAGGTGAAGGATTATCAAGGGTGATATTGGTGGAGAGATATAGCAATGGTACTGCTAAGAGATACGTAATTGGTGATGATTCGCAATTGCAAACCATTCTAGTTGAGGAGGATAGGTCTCTGCAAAACAGGTTTGGGGTTTTGCATTCTCCTGATAAAAGACTATCCTGGCTTCCAGATAGGATTAAAGATTTTATTCTACCTGCAGGCTTTCCCGGATCAGTCTCAGATGATTATTTGCAATACATGTTACTACAGTTCCCTACCAATGTGACTGGATGGATATGTCACACCATAGTCACTTCAAGTCTCCTAAAGGCTGTTGGTGTTGGTTCTTTCTCTGGAACCACAGCAGCTGCTTCTGCTGCTGCCATCAGATGGGTCTCAAAGGACGGCATTGGAGCTGTCGGGCGCTTATTCATTGGTGGGCGATTTGGAAATCTTTTCGACGATGATCCAAAACAATGGAGAATGTATGCAGACTTCATTGGCAGTGCTGGAAGCATTTTTGATCTGACAACCCAGTTATATCCCGGATACTTTCTTCCTTTGGCATCTCTTGGAAATCTTACTAAGGCTATAGCAAGAGGACTAAAAGATCCTTCTTCTAGAGTGATTCAAAGCCACTTTGCAATTTCAGTAAATCTGGGAGAGGTAGCAGCAAAGGAAGAAGTTTGGGAAGTTGTAGCTCAATTGGTTGGTCTTGGTTTGGGCATATTGATACTGGATACACCCGGCCTTGTAAAATCATATACTGTACTTTCATCAACTTGGTTGATTGTACGGCTTCTTCATCTTTGGCTACGCTACGAATCACTTTCAGTTCTCCAGTTTAACACGATAAATATTAAGCGTGCTCGCATACTGGTAAAATCACATGTTTTACATTCCACTGTTCCAGGATGCTTGGATTGCAACAAGGAAGAGAATATATTAGTGTGGTCACAGTTCATGAAGCCAATAATAATTTTCGGTTCACCCTTAGACAAGATGGATGGAATGGAGAGATCTCATTTTATGGTAGAGGCTCTTCTAGAGTTATATGCAAATGAGAAATATATTCTTGTGGTAAATCAGCAACTAGATGATTTGAAGTTTTATGTTTCTTTCAAGGTTGGAGCTACAAGTGTCTCGGTATTGCGAAGCATATGGCAGACATTCTGGCTTAGTGAGAATTGGGAGAGAAAGGGTAACGTCTGTGATCAACTTGCCAGTAGCCTAATGGAATTGGAAAATAGGTTTGATGATTTCATTCAAAAGTTGAAAGATGCTGAATGGGATACTCAACAATTAAATTTGAAGGTTCCCAAAGAAATTTCAATTGATGATATCAATACTTTTTAA

Protein sequence

>Msa1024610

MSQTLQFSLSSTAFNSSSLNLKKLKKVKPRSFQILCSSKHSSFKDDDVNKGGEGLSRVILVERYSNGTAKRYVIGDDSQLQTILVEEDRSLQNRFGVLHSPDKRLSWLPDRIKDFILPAGFPGSVSDDYLQYMLLQFPTNVTGWICHTIVTSSLLKAVGVGSFSGTTAAASAAAIRWVSKDGIGAVGRLFIGGRFGNLFDDDPKQWRMYADFIGSAGSIFDLTTQLYPGYFLPLASLGNLTKAIARGLKDPSSRVIQSHFAISVNLGEVAAKEEVWEVVAQLVGLGLGILILDTPGLVKSYTVLSSTWLIVRLLHLWLRYESLSVLQFNTINIKRARILVKSHVLHSTVPGCLDCNKEENILVWSQFMKPIIIFGSPLDKMDGMERSHFMVEALLELYANEKYILVVNQQLDDLKFYVSFKVGATSVSVLRSIWQTFWLSENWERKGNVCDQLASSLMELENRFDDFIQKLKDAEWDTQQLNLKVPKEISIDDINTF*