AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0882970


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0882970 MtrunA17_Chr6g0463001 96.218 238 9 0 1 238 1 238 1.08e-159 441
Msa0882970 MtrunA17_Chr6g0462991 77.311 238 35 3 1 238 1 219 3.11e-118 336
Msa0882970 MtrunA17_Chr1g0202361 63.713 237 66 9 1 236 41 258 1.67e-81 244
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0882970 AT5G52900.1 40.486 247 116 12 2 236 7 234 2.43e-34 123

Find 71 sgRNAs with CRISPR-Local

Find 185 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAGCTTTGCCATCAAATT+TGG 0.085645 6_1:-33003158 Msa0882970:three_prime_UTR
TGAAGTTGTTCAACTGATTT+TGG 0.105484 6_1:-33003038 Msa0882970:three_prime_UTR
CTACTAGTGATGATGGTTTA+AGG 0.126697 6_1:+33004171 None:intergenic
TTGAACAACTTCACTGATTT+TGG 0.128505 6_1:+33003048 None:intergenic
GCCATGCCATATATCAATTT+TGG 0.147016 6_1:+33002945 None:intergenic
GGCTTCTTCTATCTACTCTT+TGG 0.209208 6_1:+33004250 None:intergenic
ATATGTATACTTATTTCTTA+TGG 0.213816 6_1:+33003198 None:intergenic
CTTCTAGAAGATGGCATTCT+TGG 0.216433 6_1:+33004074 None:intergenic
TTTATTTGTTACATGTGATA+TGG 0.284843 6_1:+33003848 None:intergenic
AGCTTCTTCCTTCATTGAAA+TGG 0.311354 6_1:-33004099 Msa0882970:CDS
GATTCTCCAAAATTGATATA+TGG 0.315311 6_1:-33002951 Msa0882970:three_prime_UTR
CCTCAATTGTGTTCGTGTTA+TGG 0.317974 6_1:+33003320 None:intergenic
TTCAATGATTCAACAAATAA+TGG 0.323139 6_1:+33003942 None:intergenic
AAGAATATTAGAGGAAATTA+TGG 0.323873 6_1:-33003657 Msa0882970:CDS
CAAGCTTTGCCATCAAATTT+GGG 0.333271 6_1:-33003157 Msa0882970:three_prime_UTR
AGTGAGAGGGGATTGTTGTA+AGG 0.366132 6_1:+33004010 None:intergenic
GAATATGCAACACTAATTCT+TGG 0.384978 6_1:+33003624 None:intergenic
TTGCATATTCCGCGGATGAT+TGG 0.394949 6_1:-33003611 Msa0882970:CDS
ATTCAACAAATAATGGCATT+AGG 0.397396 6_1:+33003949 None:intergenic
TTTGATGAATCATATTCATA+TGG 0.399205 6_1:+33003912 None:intergenic
CAATCAGTGAAGAATATTAG+AGG 0.410239 6_1:-33003666 Msa0882970:CDS
TCACTAGTAGAAAGCCTTGA+TGG 0.413442 6_1:-33004158 Msa0882970:CDS
AGAGGGGATTGTTGTAAGGT+TGG 0.430996 6_1:+33004014 None:intergenic
ATGAATCTTTGAAGATAACT+TGG 0.435778 6_1:+33004273 None:intergenic
GCCTTTGTGTAGAAGATTGA+GGG 0.450787 6_1:-33003733 Msa0882970:CDS
CTTCATTGCAAAAGATCCAT+TGG 0.453750 6_1:-33003543 Msa0882970:intron
AGGCTTTCTACTAGTGATGA+TGG 0.454755 6_1:+33004164 None:intergenic
TGGAAAGTGTGAGGGAAAGA+AGG 0.460669 6_1:+33004293 None:intergenic
GAAATAAGTATACATATGAT+TGG 0.461396 6_1:-33003192 Msa0882970:three_prime_UTR
ATTTCTTATGGATACTCCAT+TGG 0.463751 6_1:+33003210 None:intergenic
AGCATCAAGATAAGTTCTAA+AGG 0.463859 6_1:+33004130 None:intergenic
TCTTGGATCCATTTCAATGA+AGG 0.466142 6_1:+33004091 None:intergenic
CAAGAAGCCCTTCATTGAAA+AGG 0.483698 6_1:-33003806 Msa0882970:CDS
AAGTGTCAGTGTCGTGTCAC+CGG 0.493765 6_1:+33002870 None:intergenic
GGCCTTTGTGTAGAAGATTG+AGG 0.502821 6_1:-33003734 Msa0882970:CDS
CATATTCCGCGGATGATTGG+AGG 0.504236 6_1:-33003608 Msa0882970:CDS
AGAGTAGATAGAAGAAGCCA+TGG 0.511798 6_1:-33004246 Msa0882970:exon
TAATGGCATTAGGTAACCAT+TGG 0.512546 6_1:+33003959 None:intergenic
GGAAAGTGTGAGGGAAAGAA+GGG 0.527768 6_1:+33004294 None:intergenic
CATTGGCCTTGTCTGCACCA+TGG 0.530971 6_1:+33003227 None:intergenic
GCATGTTAGAGTGCATATCA+AGG 0.534911 6_1:-33003406 Msa0882970:three_prime_UTR
TCCAAAATTGATATATGGCA+TGG 0.535160 6_1:-33002946 Msa0882970:three_prime_UTR
TATGAAGCACGGACACTCCT+CGG 0.547584 6_1:-33002905 Msa0882970:three_prime_UTR
GAGAGGATGAGATGTTTCCA+TGG 0.551109 6_1:+33004229 None:intergenic
TCAAAACCATGGTGCAGACA+AGG 0.563779 6_1:-33003233 Msa0882970:three_prime_UTR
AAGATAACTTGGAAAGTGTG+AGG 0.569745 6_1:+33004284 None:intergenic
ATGTGATATGGAAGAAGCTA+TGG 0.572672 6_1:+33003860 None:intergenic
AAAGGTGTAGATCATTATCA+AGG 0.573283 6_1:-33003788 Msa0882970:CDS
TTCTAAAGGAAGAACCATCA+AGG 0.579632 6_1:+33004144 None:intergenic
CCATAACACGAACACAATTG+AGG 0.580401 6_1:-33003320 Msa0882970:three_prime_UTR
TCCTCGGATTAGACGTGTCC+CGG 0.580520 6_1:-33002889 Msa0882970:three_prime_UTR
AGTGTCAGTGTCGTGTCACC+GGG 0.591978 6_1:+33002871 None:intergenic
GGGCTTCTTGGATCTTCTAG+AGG 0.593121 6_1:+33003819 None:intergenic
TGCTTTCAATCTATGAAGCA+CGG 0.597624 6_1:-33002916 Msa0882970:three_prime_UTR
AGATAACTTGGAAAGTGTGA+GGG 0.605881 6_1:+33004285 None:intergenic
CATGGTGCAGACAAGGCCAA+TGG 0.606612 6_1:-33003226 Msa0882970:three_prime_UTR
CAATTGTGTTCGTGTTATGG+CGG 0.608660 6_1:+33003323 None:intergenic
TGCAACCACAATTTAGACCA+CGG 0.611255 6_1:-33003369 Msa0882970:three_prime_UTR
AAATGATTTAAAGATAGCAA+AGG 0.613534 6_1:+33004322 None:intergenic
CATCAACAAGAGTAGTGAGA+GGG 0.614657 6_1:+33003997 None:intergenic
TGACACCGTGGTCTAAATTG+TGG 0.618761 6_1:+33003364 None:intergenic
AATTGATATATGGCATGGCA+TGG 0.619144 6_1:-33002941 Msa0882970:three_prime_UTR
AATTAGTGTTGCATATTCCG+CGG 0.626302 6_1:-33003619 Msa0882970:CDS
CACGCGCCTCCAATCATCCG+CGG 0.649335 6_1:+33003602 None:intergenic
AAGTATACATATGATTGGTG+AGG 0.653104 6_1:-33003187 Msa0882970:three_prime_UTR
ACGACTGCAATTCAAAACCA+TGG 0.660406 6_1:-33003244 Msa0882970:three_prime_UTR
GCATCAACAAGAGTAGTGAG+AGG 0.665674 6_1:+33003996 None:intergenic
CCCCTCAATCTTCTACACAA+AGG 0.666242 6_1:+33003732 None:intergenic
CCTTTGTGTAGAAGATTGAG+GGG 0.676588 6_1:-33003732 Msa0882970:CDS
ACCGGGACACGTCTAATCCG+AGG 0.677375 6_1:+33002888 None:intergenic
ATCAACAAGAGTAGTGAGAG+GGG 0.692218 6_1:+33003998 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAGTATTTGAAATTTTTA+AGG - chr6_1:33003458-33003477 Msa0882970:intron 10.0%
!!! AAAAGTATTTGAAATTTTTA+AGG - chr6_1:33003458-33003477 Msa0882970:intron 10.0%
!!! TAATTATTTTGATATTGACA+AGG - chr6_1:33003749-33003768 Msa0882970:CDS 15.0%
!!! ATATGTATACTTATTTCTTA+TGG + chr6_1:33004018-33004037 None:intergenic 15.0%
!!! TAATTATTTTGATATTGACA+AGG - chr6_1:33003749-33003768 Msa0882970:CDS 15.0%
!!! ATATGTATACTTATTTCTTA+TGG + chr6_1:33004018-33004037 None:intergenic 15.0%
!! AAATGATTTAAAGATAGCAA+AGG + chr6_1:33002894-33002913 None:intergenic 20.0%
!!! TAGAAAGTTTTTCATATAGT+TGG - chr6_1:33003011-33003030 Msa0882970:three_prime_UTR 20.0%
!!! ATAAAAAATCTTCTAGAAGA+TGG + chr6_1:33003151-33003170 None:intergenic 20.0%
!! TTCAATGATTCAACAAATAA+TGG + chr6_1:33003274-33003293 None:intergenic 20.0%
!! TTTGATGAATCATATTCATA+TGG + chr6_1:33003304-33003323 None:intergenic 20.0%
!!! TTTATTTGTTACATGTGATA+TGG + chr6_1:33003368-33003387 None:intergenic 20.0%
!! AAGAATATTAGAGGAAATTA+TGG - chr6_1:33003556-33003575 Msa0882970:CDS 20.0%
!!! TTTTTTTTTTGACATACCAA+TGG + chr6_1:33003689-33003708 None:intergenic 20.0%
!! GAAATAAGTATACATATGAT+TGG - chr6_1:33004021-33004040 Msa0882970:CDS 20.0%
!!! ATATATCAATTTTGGAGAAT+CGG + chr6_1:33004263-33004282 None:intergenic 20.0%
!! AAATGATTTAAAGATAGCAA+AGG + chr6_1:33002894-33002913 None:intergenic 20.0%
!!! TAGAAAGTTTTTCATATAGT+TGG - chr6_1:33003011-33003030 Msa0882970:three_prime_UTR 20.0%
!!! ATAAAAAATCTTCTAGAAGA+TGG + chr6_1:33003151-33003170 None:intergenic 20.0%
!! TTCAATGATTCAACAAATAA+TGG + chr6_1:33003274-33003293 None:intergenic 20.0%
!! TTTGATGAATCATATTCATA+TGG + chr6_1:33003304-33003323 None:intergenic 20.0%
!!! TTTATTTGTTACATGTGATA+TGG + chr6_1:33003368-33003387 None:intergenic 20.0%
!! AAGAATATTAGAGGAAATTA+TGG - chr6_1:33003556-33003575 Msa0882970:CDS 20.0%
!!! TTTTTTTTTTGACATACCAA+TGG + chr6_1:33003689-33003708 None:intergenic 20.0%
!! GAAATAAGTATACATATGAT+TGG - chr6_1:33004021-33004040 Msa0882970:CDS 20.0%
!!! ATATATCAATTTTGGAGAAT+CGG + chr6_1:33004263-33004282 None:intergenic 20.0%
!! ATGAATCTTTGAAGATAACT+TGG + chr6_1:33002943-33002962 None:intergenic 25.0%
! ATTCAACAAATAATGGCATT+AGG + chr6_1:33003267-33003286 None:intergenic 25.0%
!! TTCACAACATTTTCATGTTT+TGG + chr6_1:33003520-33003539 None:intergenic 25.0%
! TAGACATTCACGAAAAATTT+CGG + chr6_1:33003938-33003957 None:intergenic 25.0%
!! TTTTCTTTTCCCAAATTTGA+TGG + chr6_1:33004068-33004087 None:intergenic 25.0%
! GATTCTCCAAAATTGATATA+TGG - chr6_1:33004262-33004281 Msa0882970:five_prime_UTR 25.0%
!! ATGAATCTTTGAAGATAACT+TGG + chr6_1:33002943-33002962 None:intergenic 25.0%
! ATTCAACAAATAATGGCATT+AGG + chr6_1:33003267-33003286 None:intergenic 25.0%
!! TTCACAACATTTTCATGTTT+TGG + chr6_1:33003520-33003539 None:intergenic 25.0%
! TAGACATTCACGAAAAATTT+CGG + chr6_1:33003938-33003957 None:intergenic 25.0%
!! TTTTCTTTTCCCAAATTTGA+TGG + chr6_1:33004068-33004087 None:intergenic 25.0%
! GATTCTCCAAAATTGATATA+TGG - chr6_1:33004262-33004281 Msa0882970:five_prime_UTR 25.0%
GAAAAACTTTCTATTGAGAG+AGG + chr6_1:33003004-33003023 None:intergenic 30.0%
! AGCATCAAGATAAGTTCTAA+AGG + chr6_1:33003086-33003105 None:intergenic 30.0%
! ATCTACACCTTTTCAATGAA+GGG + chr6_1:33003417-33003436 None:intergenic 30.0%
! AAAGGTGTAGATCATTATCA+AGG - chr6_1:33003425-33003444 Msa0882970:intron 30.0%
CAATCAGTGAAGAATATTAG+AGG - chr6_1:33003547-33003566 Msa0882970:CDS 30.0%
GAATATGCAACACTAATTCT+TGG + chr6_1:33003592-33003611 None:intergenic 30.0%
ACTCTATGTATTAACACACA+TGG + chr6_1:33003723-33003742 None:intergenic 30.0%
ATTTCTTATGGATACTCCAT+TGG + chr6_1:33004006-33004025 None:intergenic 30.0%
AAGTATACATATGATTGGTG+AGG - chr6_1:33004026-33004045 Msa0882970:CDS 30.0%
!!! TTGAACAACTTCACTGATTT+TGG + chr6_1:33004168-33004187 None:intergenic 30.0%
!! TGAAGTTGTTCAACTGATTT+TGG - chr6_1:33004175-33004194 Msa0882970:CDS 30.0%
!! GAAGTTGTTCAACTGATTTT+GGG - chr6_1:33004176-33004195 Msa0882970:CDS 30.0%
!! TTTTGGAGAATCGGAAATAA+CGG + chr6_1:33004254-33004273 None:intergenic 30.0%
TCCAAAATTGATATATGGCA+TGG - chr6_1:33004267-33004286 Msa0882970:five_prime_UTR 30.0%
GAAAAACTTTCTATTGAGAG+AGG + chr6_1:33003004-33003023 None:intergenic 30.0%
! AGCATCAAGATAAGTTCTAA+AGG + chr6_1:33003086-33003105 None:intergenic 30.0%
! ATCTACACCTTTTCAATGAA+GGG + chr6_1:33003417-33003436 None:intergenic 30.0%
! AAAGGTGTAGATCATTATCA+AGG - chr6_1:33003425-33003444 Msa0882970:intron 30.0%
CAATCAGTGAAGAATATTAG+AGG - chr6_1:33003547-33003566 Msa0882970:CDS 30.0%
GAATATGCAACACTAATTCT+TGG + chr6_1:33003592-33003611 None:intergenic 30.0%
ACTCTATGTATTAACACACA+TGG + chr6_1:33003723-33003742 None:intergenic 30.0%
ATTTCTTATGGATACTCCAT+TGG + chr6_1:33004006-33004025 None:intergenic 30.0%
AAGTATACATATGATTGGTG+AGG - chr6_1:33004026-33004045 Msa0882970:CDS 30.0%
!!! TTGAACAACTTCACTGATTT+TGG + chr6_1:33004168-33004187 None:intergenic 30.0%
!! TGAAGTTGTTCAACTGATTT+TGG - chr6_1:33004175-33004194 Msa0882970:CDS 30.0%
!! GAAGTTGTTCAACTGATTTT+GGG - chr6_1:33004176-33004195 Msa0882970:CDS 30.0%
!! TTTTGGAGAATCGGAAATAA+CGG + chr6_1:33004254-33004273 None:intergenic 30.0%
TCCAAAATTGATATATGGCA+TGG - chr6_1:33004267-33004286 Msa0882970:five_prime_UTR 30.0%
! AGATAACTTGGAAAGTGTGA+GGG + chr6_1:33002931-33002950 None:intergenic 35.0%
! AAGATAACTTGGAAAGTGTG+AGG + chr6_1:33002932-33002951 None:intergenic 35.0%
!! CTACTAGTGATGATGGTTTA+AGG + chr6_1:33003045-33003064 None:intergenic 35.0%
! TTCTAAAGGAAGAACCATCA+AGG + chr6_1:33003072-33003091 None:intergenic 35.0%
AGCTTCTTCCTTCATTGAAA+TGG - chr6_1:33003114-33003133 Msa0882970:three_prime_UTR 35.0%
TCTTGGATCCATTTCAATGA+AGG + chr6_1:33003125-33003144 None:intergenic 35.0%
TAATGGCATTAGGTAACCAT+TGG + chr6_1:33003257-33003276 None:intergenic 35.0%
ATGTGATATGGAAGAAGCTA+TGG + chr6_1:33003356-33003375 None:intergenic 35.0%
! GATCTACACCTTTTCAATGA+AGG + chr6_1:33003418-33003437 None:intergenic 35.0%
AATTAGTGTTGCATATTCCG+CGG - chr6_1:33003594-33003613 Msa0882970:CDS 35.0%
CTTCATTGCAAAAGATCCAT+TGG - chr6_1:33003670-33003689 Msa0882970:CDS 35.0%
TCAAGCTTTGCCATCAAATT+TGG - chr6_1:33004055-33004074 Msa0882970:CDS 35.0%
CAAGCTTTGCCATCAAATTT+GGG - chr6_1:33004056-33004075 Msa0882970:CDS 35.0%
!!! ACAACTTCACTGATTTTGGA+AGG + chr6_1:33004164-33004183 None:intergenic 35.0%
!!! TGTTCAACTGATTTTGGGAT+TGG - chr6_1:33004181-33004200 Msa0882970:CDS 35.0%
! GCCATGCCATATATCAATTT+TGG + chr6_1:33004271-33004290 None:intergenic 35.0%
AATTGATATATGGCATGGCA+TGG - chr6_1:33004272-33004291 Msa0882970:five_prime_UTR 35.0%
TGCTTTCAATCTATGAAGCA+CGG - chr6_1:33004297-33004316 Msa0882970:five_prime_UTR 35.0%
! AGATAACTTGGAAAGTGTGA+GGG + chr6_1:33002931-33002950 None:intergenic 35.0%
! AAGATAACTTGGAAAGTGTG+AGG + chr6_1:33002932-33002951 None:intergenic 35.0%
!! CTACTAGTGATGATGGTTTA+AGG + chr6_1:33003045-33003064 None:intergenic 35.0%
! TTCTAAAGGAAGAACCATCA+AGG + chr6_1:33003072-33003091 None:intergenic 35.0%
AGCTTCTTCCTTCATTGAAA+TGG - chr6_1:33003114-33003133 Msa0882970:three_prime_UTR 35.0%
TCTTGGATCCATTTCAATGA+AGG + chr6_1:33003125-33003144 None:intergenic 35.0%
TAATGGCATTAGGTAACCAT+TGG + chr6_1:33003257-33003276 None:intergenic 35.0%
ATGTGATATGGAAGAAGCTA+TGG + chr6_1:33003356-33003375 None:intergenic 35.0%
! GATCTACACCTTTTCAATGA+AGG + chr6_1:33003418-33003437 None:intergenic 35.0%
AATTAGTGTTGCATATTCCG+CGG - chr6_1:33003594-33003613 Msa0882970:CDS 35.0%
CTTCATTGCAAAAGATCCAT+TGG - chr6_1:33003670-33003689 Msa0882970:CDS 35.0%
TCAAGCTTTGCCATCAAATT+TGG - chr6_1:33004055-33004074 Msa0882970:CDS 35.0%
CAAGCTTTGCCATCAAATTT+GGG - chr6_1:33004056-33004075 Msa0882970:CDS 35.0%
!!! ACAACTTCACTGATTTTGGA+AGG + chr6_1:33004164-33004183 None:intergenic 35.0%
!!! TGTTCAACTGATTTTGGGAT+TGG - chr6_1:33004181-33004200 Msa0882970:CDS 35.0%
! GCCATGCCATATATCAATTT+TGG + chr6_1:33004271-33004290 None:intergenic 35.0%
AATTGATATATGGCATGGCA+TGG - chr6_1:33004272-33004291 Msa0882970:five_prime_UTR 35.0%
TGCTTTCAATCTATGAAGCA+CGG - chr6_1:33004297-33004316 Msa0882970:five_prime_UTR 35.0%
GGCTTCTTCTATCTACTCTT+TGG + chr6_1:33002966-33002985 None:intergenic 40.0%
AGAGTAGATAGAAGAAGCCA+TGG - chr6_1:33002967-33002986 Msa0882970:three_prime_UTR 40.0%
AGGCTTTCTACTAGTGATGA+TGG + chr6_1:33003052-33003071 None:intergenic 40.0%
TCACTAGTAGAAAGCCTTGA+TGG - chr6_1:33003055-33003074 Msa0882970:three_prime_UTR 40.0%
! CTTCTAGAAGATGGCATTCT+TGG + chr6_1:33003142-33003161 None:intergenic 40.0%
ATCAACAAGAGTAGTGAGAG+GGG + chr6_1:33003218-33003237 None:intergenic 40.0%
CATCAACAAGAGTAGTGAGA+GGG + chr6_1:33003219-33003238 None:intergenic 40.0%
! GCAGATCAACTCTTTTCCAA+TGG - chr6_1:33003238-33003257 Msa0882970:three_prime_UTR 40.0%
! CTTTTCAATGAAGGGCTTCT+TGG + chr6_1:33003409-33003428 None:intergenic 40.0%
CAAGAAGCCCTTCATTGAAA+AGG - chr6_1:33003407-33003426 Msa0882970:three_prime_UTR 40.0%
GCCTTTGTGTAGAAGATTGA+GGG - chr6_1:33003480-33003499 Msa0882970:intron 40.0%
CCTTTGTGTAGAAGATTGAG+GGG - chr6_1:33003481-33003500 Msa0882970:intron 40.0%
AGATTGAGGGGTCAAAAATC+AGG - chr6_1:33003493-33003512 Msa0882970:intron 40.0%
GCATGTTAGAGTGCATATCA+AGG - chr6_1:33003807-33003826 Msa0882970:CDS 40.0%
TGCAACCACAATTTAGACCA+CGG - chr6_1:33003844-33003863 Msa0882970:CDS 40.0%
! CATCAACATTTTTGACACCG+TGG + chr6_1:33003864-33003883 None:intergenic 40.0%
CAATTGTGTTCGTGTTATGG+CGG + chr6_1:33003893-33003912 None:intergenic 40.0%
CCTCAATTGTGTTCGTGTTA+TGG + chr6_1:33003896-33003915 None:intergenic 40.0%
CCATAACACGAACACAATTG+AGG - chr6_1:33003893-33003912 Msa0882970:CDS 40.0%
ACGACTGCAATTCAAAACCA+TGG - chr6_1:33003969-33003988 Msa0882970:CDS 40.0%
GGCTTCTTCTATCTACTCTT+TGG + chr6_1:33002966-33002985 None:intergenic 40.0%
AGAGTAGATAGAAGAAGCCA+TGG - chr6_1:33002967-33002986 Msa0882970:three_prime_UTR 40.0%
AGGCTTTCTACTAGTGATGA+TGG + chr6_1:33003052-33003071 None:intergenic 40.0%
TCACTAGTAGAAAGCCTTGA+TGG - chr6_1:33003055-33003074 Msa0882970:three_prime_UTR 40.0%
! CTTCTAGAAGATGGCATTCT+TGG + chr6_1:33003142-33003161 None:intergenic 40.0%
ATCAACAAGAGTAGTGAGAG+GGG + chr6_1:33003218-33003237 None:intergenic 40.0%
CATCAACAAGAGTAGTGAGA+GGG + chr6_1:33003219-33003238 None:intergenic 40.0%
! GCAGATCAACTCTTTTCCAA+TGG - chr6_1:33003238-33003257 Msa0882970:three_prime_UTR 40.0%
! CTTTTCAATGAAGGGCTTCT+TGG + chr6_1:33003409-33003428 None:intergenic 40.0%
CAAGAAGCCCTTCATTGAAA+AGG - chr6_1:33003407-33003426 Msa0882970:three_prime_UTR 40.0%
GCCTTTGTGTAGAAGATTGA+GGG - chr6_1:33003480-33003499 Msa0882970:intron 40.0%
CCTTTGTGTAGAAGATTGAG+GGG - chr6_1:33003481-33003500 Msa0882970:intron 40.0%
AGATTGAGGGGTCAAAAATC+AGG - chr6_1:33003493-33003512 Msa0882970:intron 40.0%
GCATGTTAGAGTGCATATCA+AGG - chr6_1:33003807-33003826 Msa0882970:CDS 40.0%
TGCAACCACAATTTAGACCA+CGG - chr6_1:33003844-33003863 Msa0882970:CDS 40.0%
! CATCAACATTTTTGACACCG+TGG + chr6_1:33003864-33003883 None:intergenic 40.0%
CAATTGTGTTCGTGTTATGG+CGG + chr6_1:33003893-33003912 None:intergenic 40.0%
CCTCAATTGTGTTCGTGTTA+TGG + chr6_1:33003896-33003915 None:intergenic 40.0%
CCATAACACGAACACAATTG+AGG - chr6_1:33003893-33003912 Msa0882970:CDS 40.0%
ACGACTGCAATTCAAAACCA+TGG - chr6_1:33003969-33003988 Msa0882970:CDS 40.0%
! GGAAAGTGTGAGGGAAAGAA+GGG + chr6_1:33002922-33002941 None:intergenic 45.0%
! TGGAAAGTGTGAGGGAAAGA+AGG + chr6_1:33002923-33002942 None:intergenic 45.0%
GAGAGGATGAGATGTTTCCA+TGG + chr6_1:33002987-33003006 None:intergenic 45.0%
AGAGGGGATTGTTGTAAGGT+TGG + chr6_1:33003202-33003221 None:intergenic 45.0%
AGTGAGAGGGGATTGTTGTA+AGG + chr6_1:33003206-33003225 None:intergenic 45.0%
GCATCAACAAGAGTAGTGAG+AGG + chr6_1:33003220-33003239 None:intergenic 45.0%
GGCCTTTGTGTAGAAGATTG+AGG - chr6_1:33003479-33003498 Msa0882970:intron 45.0%
CCCCTCAATCTTCTACACAA+AGG + chr6_1:33003484-33003503 None:intergenic 45.0%
TTGCATATTCCGCGGATGAT+TGG - chr6_1:33003602-33003621 Msa0882970:CDS 45.0%
TGACACCGTGGTCTAAATTG+TGG + chr6_1:33003852-33003871 None:intergenic 45.0%
TCAAAACCATGGTGCAGACA+AGG - chr6_1:33003980-33003999 Msa0882970:CDS 45.0%
! GGAAAGTGTGAGGGAAAGAA+GGG + chr6_1:33002922-33002941 None:intergenic 45.0%
! TGGAAAGTGTGAGGGAAAGA+AGG + chr6_1:33002923-33002942 None:intergenic 45.0%
GAGAGGATGAGATGTTTCCA+TGG + chr6_1:33002987-33003006 None:intergenic 45.0%
AGAGGGGATTGTTGTAAGGT+TGG + chr6_1:33003202-33003221 None:intergenic 45.0%
AGTGAGAGGGGATTGTTGTA+AGG + chr6_1:33003206-33003225 None:intergenic 45.0%
GCATCAACAAGAGTAGTGAG+AGG + chr6_1:33003220-33003239 None:intergenic 45.0%
GGCCTTTGTGTAGAAGATTG+AGG - chr6_1:33003479-33003498 Msa0882970:intron 45.0%
CCCCTCAATCTTCTACACAA+AGG + chr6_1:33003484-33003503 None:intergenic 45.0%
TTGCATATTCCGCGGATGAT+TGG - chr6_1:33003602-33003621 Msa0882970:CDS 45.0%
TGACACCGTGGTCTAAATTG+TGG + chr6_1:33003852-33003871 None:intergenic 45.0%
TCAAAACCATGGTGCAGACA+AGG - chr6_1:33003980-33003999 Msa0882970:CDS 45.0%
GGGCTTCTTGGATCTTCTAG+AGG + chr6_1:33003397-33003416 None:intergenic 50.0%
CATATTCCGCGGATGATTGG+AGG - chr6_1:33003605-33003624 Msa0882970:CDS 50.0%
TATGAAGCACGGACACTCCT+CGG - chr6_1:33004308-33004327 Msa0882970:five_prime_UTR 50.0%
AAGTGTCAGTGTCGTGTCAC+CGG + chr6_1:33004346-33004365 None:intergenic 50.0%
GGGCTTCTTGGATCTTCTAG+AGG + chr6_1:33003397-33003416 None:intergenic 50.0%
CATATTCCGCGGATGATTGG+AGG - chr6_1:33003605-33003624 Msa0882970:CDS 50.0%
TATGAAGCACGGACACTCCT+CGG - chr6_1:33004308-33004327 Msa0882970:five_prime_UTR 50.0%
AAGTGTCAGTGTCGTGTCAC+CGG + chr6_1:33004346-33004365 None:intergenic 50.0%
!! CATTGGCCTTGTCTGCACCA+TGG + chr6_1:33003989-33004008 None:intergenic 55.0%
CATGGTGCAGACAAGGCCAA+TGG - chr6_1:33003987-33004006 Msa0882970:CDS 55.0%
! TCCTCGGATTAGACGTGTCC+CGG - chr6_1:33004324-33004343 Msa0882970:five_prime_UTR 55.0%
AGTGTCAGTGTCGTGTCACC+GGG + chr6_1:33004345-33004364 None:intergenic 55.0%
GGTGACACGACACTGACACT+TGG - chr6_1:33004345-33004364 Msa0882970:five_prime_UTR 55.0%
!! CATTGGCCTTGTCTGCACCA+TGG + chr6_1:33003989-33004008 None:intergenic 55.0%
CATGGTGCAGACAAGGCCAA+TGG - chr6_1:33003987-33004006 Msa0882970:CDS 55.0%
! TCCTCGGATTAGACGTGTCC+CGG - chr6_1:33004324-33004343 Msa0882970:five_prime_UTR 55.0%
AGTGTCAGTGTCGTGTCACC+GGG + chr6_1:33004345-33004364 None:intergenic 55.0%
ACCGGGACACGTCTAATCCG+AGG + chr6_1:33004328-33004347 None:intergenic 60.0%
ACCGGGACACGTCTAATCCG+AGG + chr6_1:33004328-33004347 None:intergenic 60.0%
CACGCGCCTCCAATCATCCG+CGG + chr6_1:33003614-33003633 None:intergenic 65.0%
CACGCGCCTCCAATCATCCG+CGG + chr6_1:33003614-33003633 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 33002869 33004366 33002869 ID=Msa0882970;Name=Msa0882970
chr6_1 mRNA 33002869 33004366 33002869 ID=Msa0882970-mRNA-1;Parent=Msa0882970;Name=Msa0882970-mRNA-1;_AED=0.01;_eAED=0.01;_QI=117|1|1|1|1|1|2|560|238
chr6_1 exon 33002869 33003439 33002869 ID=Msa0882970-mRNA-1:exon:8100;Parent=Msa0882970-mRNA-1
chr6_1 exon 33003544 33004366 33003544 ID=Msa0882970-mRNA-1:exon:8099;Parent=Msa0882970-mRNA-1
chr6_1 five_prime_UTR 33004250 33004366 33004250 ID=Msa0882970-mRNA-1:five_prime_utr;Parent=Msa0882970-mRNA-1
chr6_1 CDS 33003544 33004249 33003544 ID=Msa0882970-mRNA-1:cds;Parent=Msa0882970-mRNA-1
chr6_1 CDS 33003429 33003439 33003429 ID=Msa0882970-mRNA-1:cds;Parent=Msa0882970-mRNA-1
chr6_1 three_prime_UTR 33002869 33003428 33002869 ID=Msa0882970-mRNA-1:three_prime_utr;Parent=Msa0882970-mRNA-1
Gene Sequence

>Msa0882970

ATGGAAACATCTCATCCTCTCTCAATAGAAAGTTTTTCATATAGTTGGTTAGTAAACCTTAAACCATCATCACTAGTAGAAAGCCTTGATGGTTCTTCCTTTAGAACTTATCTTGATGCTTCTGATGAAGCTTCTTCCTTCATTGAAATGGATCCAAGAATGCCATCTTCTAGAAGATTTTTTATAAACTCACAAGATTTAAAATTTGACTTTCCAACCTTACAACAATCCCCTCTCACTACTCTTGTTGATGCAGATCAACTCTTTTCCAATGGTTACCTAATGCCATTATTTGTTGAATCATTGAATATAGAACCATATGAATATGATTCATCAAATTCTAATTCAAATTCAGATTCAAATTCAACCATAGCTTCTTCCATATCACATGTAACAAATAAAGTTGTTCCTCTAGAAGATCCAAGAAGCCCTTCATTGAAAAGGTGTAGATCATTATCAAGGAGCATGTTTCAAAAGTATTTGAAATTTTTAAGGCCTTTGTGTAGAAGATTGAGGGGTCAAAAATCAGGACCAAAACATGAAAATGTTGTGAAAAGAACTCAATCAGTGAAGAATATTAGAGGAAATTATGGTGATTCATCTCCAAGAATTAGTGTTGCATATTCCGCGGATGATTGGAGGCGCGTGTCTTGTGATTCTGATTGTTCAATTTATGAAGCTGTTCTTCATTGCAAAAGATCCATTGAAATGAGCTAA

Protein sequence

>Msa0882970

METSHPLSIESFSYSWLVNLKPSSLVESLDGSSFRTYLDASDEASSFIEMDPRMPSSRRFFINSQDLKFDFPTLQQSPLTTLVDADQLFSNGYLMPLFVESLNIEPYEYDSSNSNSNSDSNSTIASSISHVTNKVVPLEDPRSPSLKRCRSLSRSMFQKYLKFLRPLCRRLRGQKSGPKHENVVKRTQSVKNIRGNYGDSSPRISVAYSADDWRRVSCDSDCSIYEAVLHCKRSIEMS*