AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0602360


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0602360 MtrunA17_Chr4g0030011 64.135 237 25 4 1 195 1 219 5.37e-94 273
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0602360 AT5G59770.1 41.395 215 67 4 9 182 8 204 3.39e-43 144

Find 70 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGAGAAATACCTTATATTT+AGG 0.112101 4_2:-45964014 Msa0602360:three_prime_UTR
TGGAATTAGCTTTGAGAATT+AGG 0.162526 4_2:-45964034 Msa0602360:three_prime_UTR
AGGAAATCATAATAACTAAA+TGG 0.223354 4_2:+45964806 None:intergenic
GAGAGCCATTGTTGTTATTA+TGG 0.226900 4_2:+45966955 None:intergenic
CTGCACAGATTTCTACCTTA+TGG 0.243764 4_2:+45964338 None:intergenic
ATATTCTTCTCCTTTATAAT+TGG 0.246163 4_2:+45964854 None:intergenic
TCTACTAACTTTGATTCATT+GGG 0.249834 4_2:+45967042 None:intergenic
TCTTCAATGTGCTGCATTCT+TGG 0.260285 4_2:-45966693 Msa0602360:CDS
GGAGAAATACCTTATATTTA+GGG 0.264068 4_2:-45964013 Msa0602360:three_prime_UTR
TTCTACTAACTTTGATTCAT+TGG 0.266010 4_2:+45967041 None:intergenic
AACAATCAAATGGTGCAAAT+TGG 0.273132 4_2:-45967075 None:intergenic
CGAAGTCATACATACTAAAA+TGG 0.275021 4_2:+45964137 None:intergenic
GCTTGGGAAATTGTCCTTCT+TGG 0.285396 4_2:-45965229 Msa0602360:CDS
TATCCTGTGGGAGTGTTTCC+TGG 0.286736 4_2:-45965050 Msa0602360:CDS
TCTAAAATATTTCCTTTGAT+TGG 0.298079 4_2:+45964223 None:intergenic
AACTCTTCAAATACAGGCTT+GGG 0.300741 4_2:+45964164 None:intergenic
AATAATATACTGACTAATTA+AGG 0.309678 4_2:+45966802 None:intergenic
GGAATGGATAAACTATAATT+AGG 0.324528 4_2:+45964526 None:intergenic
CTTTCTGTACCATTGTTACT+AGG 0.336549 4_2:-45964381 Msa0602360:three_prime_UTR
ATAACAATTGTACGAAATAA+TGG 0.346907 4_2:+45964246 None:intergenic
CCACTGCTACCCTAAATATA+AGG 0.350505 4_2:+45964004 None:intergenic
ACCTCATTTCTCCATCAGTA+TGG 0.378253 4_2:+45965162 None:intergenic
CTTCTTGGATGACCTATATC+AGG 0.387626 4_2:-45965214 Msa0602360:CDS
GCATTATGCTTTCAGTTGCT+TGG 0.401661 4_2:-45965246 Msa0602360:CDS
CATTATGCTTTCAGTTGCTT+GGG 0.402222 4_2:-45965245 Msa0602360:CDS
CCAGGCGCTTCCAATTATAA+AGG 0.426455 4_2:-45964864 Msa0602360:CDS
CTCTCCACTTCCTCCATCAC+TGG 0.426494 4_2:-45966845 Msa0602360:CDS
TAGTTATTATGATTTCCTTA+AGG 0.432805 4_2:-45964801 Msa0602360:intron
GGAAATCATAATAACTAAAT+GGG 0.435335 4_2:+45964807 None:intergenic
GGAATAAACTCTTCAAATAC+AGG 0.446971 4_2:+45964158 None:intergenic
AAACTCTTCAAATACAGGCT+TGG 0.455897 4_2:+45964163 None:intergenic
TTATAGTTTATCCATTCCTC+TGG 0.461684 4_2:-45964521 Msa0602360:CDS
TTCTATATTCTCCATACTGA+TGG 0.480176 4_2:-45965173 Msa0602360:CDS
TACAATTGTTATCCAATCAA+AGG 0.497645 4_2:-45964235 Msa0602360:three_prime_UTR
CCTTTATAATTGGAAGCGCC+TGG 0.502979 4_2:+45964864 None:intergenic
AGTTCCAGTGATGGAGGAAG+TGG 0.507585 4_2:+45966841 None:intergenic
GTTTATTGTGATTTATCCTG+TGG 0.508886 4_2:-45965063 Msa0602360:CDS
AATCAAAGTTAGTAGAAGAG+AGG 0.511792 4_2:-45967035 Msa0602360:five_prime_UTR
CCTTATATTTAGGGTAGCAG+TGG 0.512899 4_2:-45964004 Msa0602360:three_prime_UTR
CGTGACAAGAAAAGAGCATA+AGG 0.514361 4_2:-45964444 Msa0602360:exon
GAAGTTATACACGGTGCCAT+TGG 0.515549 4_2:-45966671 Msa0602360:intron
ACTAAATGGGAGGCTTGAAA+AGG 0.523268 4_2:+45964820 None:intergenic
TGCAGTATGGTTGATGTACC+AGG 0.524168 4_2:-45964882 Msa0602360:intron
GCCGCTGCTTGAACAAATGC+AGG 0.533526 4_2:+45964487 None:intergenic
GAGTCCTATTAAAATCCATA+AGG 0.535651 4_2:-45964353 Msa0602360:three_prime_UTR
CTGATATAGGTCATCCAAGA+AGG 0.541355 4_2:+45965215 None:intergenic
CATATGAACTCACTTTCTCC+AGG 0.542825 4_2:+45965032 None:intergenic
ATACTGACTAATTAAGGTGC+CGG 0.551153 4_2:+45966808 None:intergenic
CTACTAACTTTGATTCATTG+GGG 0.563044 4_2:+45967043 None:intergenic
AAATCTGTGCAGAATAATGC+AGG 0.564159 4_2:-45964327 Msa0602360:three_prime_UTR
AGCATAAGTTCCAGTGATGG+AGG 0.564797 4_2:+45966835 None:intergenic
ACTGGAACTTATGCTTCTGC+CGG 0.569567 4_2:-45966827 Msa0602360:CDS
TTTATTGTGATTTATCCTGT+GGG 0.570256 4_2:-45965062 Msa0602360:CDS
ACTAACTTTGATTCATTGGG+GGG 0.572060 4_2:+45967045 None:intergenic
ACCTGCATTTGTTCAAGCAG+CGG 0.572458 4_2:-45964488 Msa0602360:CDS
GAAGAGAGGAGAGAATCCAT+TGG 0.582790 4_2:-45967021 Msa0602360:five_prime_UTR
TATAGTTTGAACCAGAGGAA+TGG 0.586252 4_2:+45964510 None:intergenic
CTTGAAAAGAGTTGTAAGCA+AGG 0.590281 4_2:+45966912 None:intergenic
TACTAACTTTGATTCATTGG+GGG 0.591664 4_2:+45967044 None:intergenic
CTAATCCATAATAACAACAA+TGG 0.598645 4_2:-45966960 Msa0602360:exon
ATACAGGCTTGGGGTGACAC+AGG 0.606804 4_2:+45964174 None:intergenic
TCTCCAGGAAACACTCCCAC+AGG 0.614332 4_2:+45965047 None:intergenic
GCAGGTATAGTTTGAACCAG+AGG 0.617176 4_2:+45964505 None:intergenic
TCCATACTGATGGAGAAATG+AGG 0.622962 4_2:-45965163 Msa0602360:intron
AATCATAATAACTAAATGGG+AGG 0.632223 4_2:+45964810 None:intergenic
ACTCTTTGGCCTAGTAACAA+TGG 0.641111 4_2:+45964372 None:intergenic
AGAAGCATAAGTTCCAGTGA+TGG 0.646845 4_2:+45966832 None:intergenic
ACTCTTCAAATACAGGCTTG+GGG 0.648938 4_2:+45964165 None:intergenic
GCATTCTTGGAAGTTATACA+CGG 0.672092 4_2:-45966680 Msa0602360:CDS
AGGATAAATCACAATAAACG+CGG 0.753232 4_2:+45965067 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAATATACTGACTAATTA+AGG + chr4_2:45964268-45964287 None:intergenic 15.0%
!!! ATATTTGTTTTTTTTAGAGT+TGG - chr4_2:45965148-45965167 Msa0602360:intron 15.0%
!!! TATTTGTTTTTTTTAGAGTT+GGG - chr4_2:45965149-45965168 Msa0602360:intron 15.0%
!!! TGATTTTCTCAAATTATTAA+CGG + chr4_2:45965594-45965613 None:intergenic 15.0%
!!! TTCTTTATCTTTTGATTATT+AGG - chr4_2:45965973-45965992 Msa0602360:intron 15.0%
!!! TTAATTCAGCAATATTTTGT+TGG - chr4_2:45964341-45964360 Msa0602360:three_prime_UTR 20.0%
!! TATGACTTATATTCAGAAAT+TGG - chr4_2:45964949-45964968 Msa0602360:intron 20.0%
!! AGCAAAAAAGAAAAAGAAAA+AGG + chr4_2:45965518-45965537 None:intergenic 20.0%
!!! TAACACAATTTTTATGGATT+TGG + chr4_2:45965731-45965750 None:intergenic 20.0%
!! ATATTCTTCTCCTTTATAAT+TGG + chr4_2:45966216-45966235 None:intergenic 20.0%
!! GGAAATCATAATAACTAAAT+GGG + chr4_2:45966263-45966282 None:intergenic 20.0%
!! AGGAAATCATAATAACTAAA+TGG + chr4_2:45966264-45966283 None:intergenic 20.0%
!! TAGTTATTATGATTTCCTTA+AGG - chr4_2:45966266-45966285 Msa0602360:intron 20.0%
!! AAAACAACATTTATATCACA+GGG + chr4_2:45966394-45966413 None:intergenic 20.0%
!! TGTAATAATCTACAATTCAT+AGG + chr4_2:45966493-45966512 None:intergenic 20.0%
!!! TCAGTAATGATTAAGATTTT+AGG + chr4_2:45966790-45966809 None:intergenic 20.0%
!! ATAACAATTGTACGAAATAA+TGG + chr4_2:45966824-45966843 None:intergenic 20.0%
!!! TCTAAAATATTTCCTTTGAT+TGG + chr4_2:45966847-45966866 None:intergenic 20.0%
! TCTACTAACTTTGATTCATT+GGG + chr4_2:45964028-45964047 None:intergenic 25.0%
! TTCTACTAACTTTGATTCAT+TGG + chr4_2:45964029-45964048 None:intergenic 25.0%
! CTAATCCATAATAACAACAA+TGG - chr4_2:45964107-45964126 Msa0602360:three_prime_UTR 25.0%
! TGATTAATAATGTGTGAGTA+AGG + chr4_2:45964321-45964340 None:intergenic 25.0%
! TAAAGCATATAACAGTTAGA+AGG + chr4_2:45964451-45964470 None:intergenic 25.0%
! CAAATCATGAAATGAATTTC+AGG - chr4_2:45964496-45964515 Msa0602360:CDS 25.0%
! ATTCAAAATTACTATCGCTA+TGG + chr4_2:45964696-45964715 None:intergenic 25.0%
! TTGAATCCAAAATACTTATC+TGG - chr4_2:45964710-45964729 Msa0602360:intron 25.0%
! ACTTATATTCAGAAATTGGT+GGG - chr4_2:45964953-45964972 Msa0602360:intron 25.0%
! AAATATAAAAAAACGCAGAC+AGG + chr4_2:45965134-45965153 None:intergenic 25.0%
!! CAATTTATGATAAGCATTGT+TGG - chr4_2:45965247-45965266 Msa0602360:CDS 25.0%
!! TTATACCTAACTCATTTTCA+TGG - chr4_2:45965688-45965707 Msa0602360:intron 25.0%
!! CCTCTATAACACAATTTTTA+TGG + chr4_2:45965737-45965756 None:intergenic 25.0%
! CCATAAAAATTGTGTTATAG+AGG - chr4_2:45965734-45965753 Msa0602360:intron 25.0%
! TTTATTGTGATTTATCCTGT+GGG - chr4_2:45966005-45966024 Msa0602360:intron 25.0%
! AACAAAACTTAACGATAAGA+GGG + chr4_2:45966070-45966089 None:intergenic 25.0%
! AAACAAAACTTAACGATAAG+AGG + chr4_2:45966071-45966090 None:intergenic 25.0%
! AATCATAATAACTAAATGGG+AGG + chr4_2:45966260-45966279 None:intergenic 25.0%
! GCATATAAAATGTTACCTTA+AGG + chr4_2:45966284-45966303 None:intergenic 25.0%
! CAAAACAACATTTATATCAC+AGG + chr4_2:45966395-45966414 None:intergenic 25.0%
! TCAAACATAATTGAGTAGAA+AGG + chr4_2:45966420-45966439 None:intergenic 25.0%
! GGAATGGATAAACTATAATT+AGG + chr4_2:45966544-45966563 None:intergenic 25.0%
!!! TCTACCTTATGGATTTTAAT+AGG + chr4_2:45966721-45966740 None:intergenic 25.0%
! TACAATTGTTATCCAATCAA+AGG - chr4_2:45966832-45966851 Msa0602360:CDS 25.0%
!!! CATTTTAGTATGTATGACTT+CGG - chr4_2:45966931-45966950 Msa0602360:CDS 25.0%
! AGGAGAAATACCTTATATTT+AGG - chr4_2:45967053-45967072 Msa0602360:five_prime_UTR 25.0%
! GGAGAAATACCTTATATTTA+GGG - chr4_2:45967054-45967073 Msa0602360:five_prime_UTR 25.0%
TACTAACTTTGATTCATTGG+GGG + chr4_2:45964026-45964045 None:intergenic 30.0%
CTACTAACTTTGATTCATTG+GGG + chr4_2:45964027-45964046 None:intergenic 30.0%
AATCAAAGTTAGTAGAAGAG+AGG - chr4_2:45964032-45964051 Msa0602360:three_prime_UTR 30.0%
!! TACAACTCTTTTCAAGCAAT+TGG - chr4_2:45964162-45964181 Msa0602360:three_prime_UTR 30.0%
!!! AGCAATATTTTGTTGGTTCA+AGG - chr4_2:45964348-45964367 Msa0602360:three_prime_UTR 30.0%
ATCCAAAATACTTATCTGGT+AGG - chr4_2:45964714-45964733 Msa0602360:intron 30.0%
! ATCCTACCAGATAAGTATTT+TGG + chr4_2:45964719-45964738 None:intergenic 30.0%
GCAAGAAAAGTGATAAAAAC+GGG + chr4_2:45964855-45964874 None:intergenic 30.0%
CGCAAGAAAAGTGATAAAAA+CGG + chr4_2:45964856-45964875 None:intergenic 30.0%
!! TTTTTATCACTTTTCTTGCG+TGG - chr4_2:45964856-45964875 Msa0602360:CDS 30.0%
!! TACTTTTTATTCGATCGAAC+TGG - chr4_2:45964901-45964920 Msa0602360:intron 30.0%
GACTTATATTCAGAAATTGG+TGG - chr4_2:45964952-45964971 Msa0602360:intron 30.0%
TATATCTCTACTCTAACAAC+TGG - chr4_2:45965026-45965045 Msa0602360:intron 30.0%
AACAGTTTAAACAGAAAGCA+AGG + chr4_2:45965204-45965223 None:intergenic 30.0%
TTAGGTACTCATATTCATCA+AGG - chr4_2:45965272-45965291 Msa0602360:intron 30.0%
! ATTCTCTAAAAAAAGGGGAA+GGG + chr4_2:45965463-45965482 None:intergenic 30.0%
! CTGACATTCTCTAAAAAAAG+GGG + chr4_2:45965468-45965487 None:intergenic 30.0%
! CCTGACATTCTCTAAAAAAA+GGG + chr4_2:45965469-45965488 None:intergenic 30.0%
! ACCTGACATTCTCTAAAAAA+AGG + chr4_2:45965470-45965489 None:intergenic 30.0%
TCTCAAATTATTAACGGTGT+CGG + chr4_2:45965588-45965607 None:intergenic 30.0%
AGTTAGGTATAAATGAAGCA+CGG + chr4_2:45965680-45965699 None:intergenic 30.0%
GTATACCATGAAAATGAGTT+AGG + chr4_2:45965696-45965715 None:intergenic 30.0%
! GATGATTTTGCTTCAATCTT+TGG - chr4_2:45965776-45965795 Msa0602360:intron 30.0%
GATAGAAAAATGCCTGATAT+AGG + chr4_2:45965868-45965887 None:intergenic 30.0%
TTCTATATTCTCCATACTGA+TGG - chr4_2:45965894-45965913 Msa0602360:intron 30.0%
AGGATAAATCACAATAAACG+CGG + chr4_2:45966003-45966022 None:intergenic 30.0%
GTTTATTGTGATTTATCCTG+TGG - chr4_2:45966004-45966023 Msa0602360:intron 30.0%
! TATATGCAACTGATTAGTCA+TGG - chr4_2:45966297-45966316 Msa0602360:intron 30.0%
TTATAGTTTATCCATTCCTC+TGG - chr4_2:45966546-45966565 Msa0602360:intron 30.0%
!! TGGATTTTAATAGGACTCTT+TGG + chr4_2:45966712-45966731 None:intergenic 30.0%
GAGTCCTATTAAAATCCATA+AGG - chr4_2:45966714-45966733 Msa0602360:CDS 30.0%
GGAATAAACTCTTCAAATAC+AGG + chr4_2:45966912-45966931 None:intergenic 30.0%
CGAAGTCATACATACTAAAA+TGG + chr4_2:45966933-45966952 None:intergenic 30.0%
! TTTTAATCTTGCAAGTCGAA+AGG - chr4_2:45966954-45966973 Msa0602360:exon 30.0%
TTCTTCAAAGCAAAAACAAG+AGG + chr4_2:45966994-45967013 None:intergenic 30.0%
!! ACTACTCACTGTATTTTTGT+TGG - chr4_2:45967013-45967032 Msa0602360:five_prime_UTR 30.0%
!! TGGAATTAGCTTTGAGAATT+AGG - chr4_2:45967033-45967052 Msa0602360:five_prime_UTR 30.0%
ACTAACTTTGATTCATTGGG+GGG + chr4_2:45964025-45964044 None:intergenic 35.0%
!! CCTTTTTCACAAAACACCAA+TGG + chr4_2:45964065-45964084 None:intergenic 35.0%
!! CCATTGGTGTTTTGTGAAAA+AGG - chr4_2:45964062-45964081 Msa0602360:three_prime_UTR 35.0%
! GAGAGCCATTGTTGTTATTA+TGG + chr4_2:45964115-45964134 None:intergenic 35.0%
CTTGAAAAGAGTTGTAAGCA+AGG + chr4_2:45964158-45964177 None:intergenic 35.0%
!! ACTCTTTTCAAGCAATTGGA+TGG - chr4_2:45964166-45964185 Msa0602360:three_prime_UTR 35.0%
! ATACTGACTAATTAAGGTGC+CGG + chr4_2:45964262-45964281 None:intergenic 35.0%
GCATTCTTGGAAGTTATACA+CGG - chr4_2:45964387-45964406 Msa0602360:three_prime_UTR 35.0%
CATGAAATGAATTTCAGGAC+TGG - chr4_2:45964501-45964520 Msa0602360:CDS 35.0%
! TTGATGCATCTTGATGACAT+AGG - chr4_2:45964623-45964642 Msa0602360:intron 35.0%
AGAAAAGTGATAAAAACGGG+AGG + chr4_2:45964852-45964871 None:intergenic 35.0%
TTAAACAGAAAGCAAGGTCA+AGG + chr4_2:45965198-45965217 None:intergenic 35.0%
! TGATAAGCATTGTTGGTGTT+AGG - chr4_2:45965254-45965273 Msa0602360:CDS 35.0%
! TTCTCTAAAAAAAGGGGAAG+GGG + chr4_2:45965462-45965481 None:intergenic 35.0%
! CATTCTCTAAAAAAAGGGGA+AGG + chr4_2:45965464-45965483 None:intergenic 35.0%
!!! CCCTTTTTTTAGAGAATGTC+AGG - chr4_2:45965466-45965485 Msa0602360:intron 35.0%
TGCTTATACCCTATGAAACA+CGG - chr4_2:45965534-45965553 Msa0602360:intron 35.0%
CATTATGCTTTCAGTTGCTT+GGG - chr4_2:45965822-45965841 Msa0602360:intron 35.0%
TTAGTCGATACAATGCAGTA+TGG - chr4_2:45966172-45966191 Msa0602360:intron 35.0%
TTCTTCTATAACCTCACTCT+TGG - chr4_2:45966330-45966349 Msa0602360:intron 35.0%
ATTGCACGTAGAATTTCGTT+CGG - chr4_2:45966365-45966384 Msa0602360:intron 35.0%
TATAGTTTGAACCAGAGGAA+TGG + chr4_2:45966560-45966579 None:intergenic 35.0%
! CTTATGCTCTTTTCTTGTCA+CGG + chr4_2:45966625-45966644 None:intergenic 35.0%
CTTTCTGTACCATTGTTACT+AGG - chr4_2:45966686-45966705 Msa0602360:CDS 35.0%
AAATCTGTGCAGAATAATGC+AGG - chr4_2:45966740-45966759 Msa0602360:intron 35.0%
AACTCTTCAAATACAGGCTT+GGG + chr4_2:45966906-45966925 None:intergenic 35.0%
AAACTCTTCAAATACAGGCT+TGG + chr4_2:45966907-45966926 None:intergenic 35.0%
! AGAAGCATAAGTTCCAGTGA+TGG + chr4_2:45964238-45964257 None:intergenic 40.0%
TCTTCAATGTGCTGCATTCT+TGG - chr4_2:45964374-45964393 Msa0602360:three_prime_UTR 40.0%
GACAGTGTAAAACCTACCAA+TGG + chr4_2:45964415-45964434 None:intergenic 40.0%
GTTGCTTCCTTTGATGCAAT+GGG - chr4_2:45964537-45964556 Msa0602360:intron 40.0%
TTGCTTCCTTTGATGCAATG+GGG - chr4_2:45964538-45964557 Msa0602360:intron 40.0%
GAGATGGGATCGAATTACAT+CGG + chr4_2:45964784-45964803 None:intergenic 40.0%
GAAACACCTGAGTTAGAGAT+GGG + chr4_2:45964799-45964818 None:intergenic 40.0%
GGAATACAAACGATTGATCG+TGG + chr4_2:45965113-45965132 None:intergenic 40.0%
GTTCGTATCCGTGTTTCATA+GGG + chr4_2:45965545-45965564 None:intergenic 40.0%
TGTTCGTATCCGTGTTTCAT+AGG + chr4_2:45965546-45965565 None:intergenic 40.0%
GCATTATGCTTTCAGTTGCT+TGG - chr4_2:45965821-45965840 Msa0602360:intron 40.0%
CTGATATAGGTCATCCAAGA+AGG + chr4_2:45965855-45965874 None:intergenic 40.0%
CTTCTTGGATGACCTATATC+AGG - chr4_2:45965853-45965872 Msa0602360:intron 40.0%
TCCATACTGATGGAGAAATG+AGG - chr4_2:45965904-45965923 Msa0602360:intron 40.0%
ACCTCATTTCTCCATCAGTA+TGG + chr4_2:45965908-45965927 None:intergenic 40.0%
CATATGAACTCACTTTCTCC+AGG + chr4_2:45966038-45966057 None:intergenic 40.0%
ACTAAATGGGAGGCTTGAAA+AGG + chr4_2:45966250-45966269 None:intergenic 40.0%
TGAGTCAATTTCCAAGAGTG+AGG + chr4_2:45966344-45966363 None:intergenic 40.0%
ATGCTTCATTTCTCTCGATC+AGG - chr4_2:45966517-45966536 Msa0602360:intron 40.0%
! CGTGACAAGAAAAGAGCATA+AGG - chr4_2:45966623-45966642 Msa0602360:intron 40.0%
ACTCTTTGGCCTAGTAACAA+TGG + chr4_2:45966698-45966717 None:intergenic 40.0%
CTGCACAGATTTCTACCTTA+TGG + chr4_2:45966732-45966751 None:intergenic 40.0%
ACTCTTCAAATACAGGCTTG+GGG + chr4_2:45966905-45966924 None:intergenic 40.0%
CCACTGCTACCCTAAATATA+AGG + chr4_2:45967066-45967085 None:intergenic 40.0%
! CCTTATATTTAGGGTAGCAG+TGG - chr4_2:45967063-45967082 Msa0602360:five_prime_UTR 40.0%
AACTTTGATTCATTGGGGGG+AGG + chr4_2:45964022-45964041 None:intergenic 45.0%
GAAGAGAGGAGAGAATCCAT+TGG - chr4_2:45964046-45964065 Msa0602360:three_prime_UTR 45.0%
AGCATAAGTTCCAGTGATGG+AGG + chr4_2:45964235-45964254 None:intergenic 45.0%
ACTGGAACTTATGCTTCTGC+CGG - chr4_2:45964240-45964259 Msa0602360:three_prime_UTR 45.0%
!! GAAGTTATACACGGTGCCAT+TGG - chr4_2:45964396-45964415 Msa0602360:three_prime_UTR 45.0%
!! TTATACACGGTGCCATTGGT+AGG - chr4_2:45964400-45964419 Msa0602360:three_prime_UTR 45.0%
CGTTGCTTCCTTTGATGCAA+TGG - chr4_2:45964536-45964555 Msa0602360:intron 45.0%
ACTTTGTCCTTGCCATTGTC+AGG - chr4_2:45964572-45964591 Msa0602360:intron 45.0%
CTTTGTCCTTGCCATTGTCA+GGG - chr4_2:45964573-45964592 Msa0602360:intron 45.0%
TTTGTCCTTGCCATTGTCAG+GGG - chr4_2:45964574-45964593 Msa0602360:intron 45.0%
CTCATGAATTCCCCTGACAA+TGG + chr4_2:45964587-45964606 None:intergenic 45.0%
CATTGTCAGGGGAATTCATG+AGG - chr4_2:45964585-45964604 Msa0602360:intron 45.0%
ATGGGATCGAATTACATCGG+AGG + chr4_2:45964781-45964800 None:intergenic 45.0%
TTCGATCCCATCTCTAACTC+AGG - chr4_2:45964790-45964809 Msa0602360:intron 45.0%
CGAAACACCTGAGTTAGAGA+TGG + chr4_2:45964800-45964819 None:intergenic 45.0%
TTTCGTTGTGTGCTTTCTCC+AGG - chr4_2:45964815-45964834 Msa0602360:CDS 45.0%
TAAAAACGGGAGGTAACTCC+TGG + chr4_2:45964842-45964861 None:intergenic 45.0%
! ACTTTTCTTGCGTGGAGCAT+AGG - chr4_2:45964864-45964883 Msa0602360:CDS 45.0%
CACTATATTGTCCGAGACGT+AGG - chr4_2:45965071-45965090 Msa0602360:CDS 45.0%
AAAAGGGGAAGGGGTTGTAA+AGG + chr4_2:45965453-45965472 None:intergenic 45.0%
! TTCTTGGATTAGGTGTGTCC+TGG + chr4_2:45965653-45965672 None:intergenic 45.0%
AATGAAGCACGGACACTTCT+TGG + chr4_2:45965669-45965688 None:intergenic 45.0%
GCTTGGGAAATTGTCCTTCT+TGG - chr4_2:45965838-45965857 Msa0602360:intron 45.0%
! TGCAGTATGGTTGATGTACC+AGG - chr4_2:45966185-45966204 Msa0602360:intron 45.0%
!! CCTTTATAATTGGAAGCGCC+TGG + chr4_2:45966206-45966225 None:intergenic 45.0%
CCAGGCGCTTCCAATTATAA+AGG - chr4_2:45966203-45966222 Msa0602360:intron 45.0%
GCAGGTATAGTTTGAACCAG+AGG + chr4_2:45966565-45966584 None:intergenic 45.0%
ACCTGCATTTGTTCAAGCAG+CGG - chr4_2:45966579-45966598 Msa0602360:intron 45.0%
TTTGATTCATTGGGGGGAGG+TGG + chr4_2:45964019-45964038 None:intergenic 50.0%
! AGTTCCAGTGATGGAGGAAG+TGG + chr4_2:45964229-45964248 None:intergenic 50.0%
!! ATTTCAGGACTGGTTCCGAG+CGG - chr4_2:45964511-45964530 Msa0602360:CDS 50.0%
CTTCCTTTGATGCAATGGGG+AGG - chr4_2:45964541-45964560 Msa0602360:intron 50.0%
CTTCCTCCCCATTGCATCAA+AGG + chr4_2:45964547-45964566 None:intergenic 50.0%
CTTTGATGCAATGGGGAGGA+AGG - chr4_2:45964545-45964564 Msa0602360:intron 50.0%
GAATTCCCCTGACAATGGCA+AGG + chr4_2:45964582-45964601 None:intergenic 50.0%
GACCAATTGTGCCTACGTCT+CGG + chr4_2:45965085-45965104 None:intergenic 50.0%
ACACGGATACGAACACGACA+TGG - chr4_2:45965551-45965570 Msa0602360:intron 50.0%
TATGTGACATGTCCGACACC+AGG - chr4_2:45965632-45965651 Msa0602360:intron 50.0%
GATTAGGTGTGTCCTGGTGT+CGG + chr4_2:45965647-45965666 None:intergenic 50.0%
GCACGGACACTTCTTGGATT+AGG + chr4_2:45965663-45965682 None:intergenic 50.0%
!! TATCCTGTGGGAGTGTTTCC+TGG - chr4_2:45966017-45966036 Msa0602360:intron 50.0%
CTCTCCACTTCCTCCATCAC+TGG - chr4_2:45964222-45964241 Msa0602360:three_prime_UTR 55.0%
AAAGGAAGCAACGCTCCGCT+CGG + chr4_2:45964529-45964548 None:intergenic 55.0%
TGTGTGCTTTCTCCAGGTCC+AGG - chr4_2:45964821-45964840 Msa0602360:CDS 55.0%
GTCCGAGACGTAGGCACAAT+TGG - chr4_2:45965080-45965099 Msa0602360:intron 55.0%
TCTCCAGGAAACACTCCCAC+AGG + chr4_2:45966023-45966042 None:intergenic 55.0%
GCCGCTGCTTGAACAAATGC+AGG + chr4_2:45966583-45966602 None:intergenic 55.0%
ATACAGGCTTGGGGTGACAC+AGG + chr4_2:45966896-45966915 None:intergenic 55.0%
TCTTGCGTGGAGCATAGGCG+AGG - chr4_2:45964869-45964888 Msa0602360:CDS 60.0%
CGGGAGGTAACTCCTGGACC+TGG + chr4_2:45964836-45964855 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 45964003 45967086 45964003 ID=Msa0602360;Name=Msa0602360
chr4_2 mRNA 45964003 45967086 45964003 ID=Msa0602360-mRNA-1;Parent=Msa0602360;Name=Msa0602360-mRNA-1;_AED=0.17;_eAED=0.17;_QI=123|0.6|0.83|1|0.2|0.33|6|443|195
chr4_2 exon 45964003 45964550 45964003 ID=Msa0602360-mRNA-1:exon:10345;Parent=Msa0602360-mRNA-1
chr4_2 exon 45964802 45964899 45964802 ID=Msa0602360-mRNA-1:exon:10344;Parent=Msa0602360-mRNA-1
chr4_2 exon 45965045 45965094 45965045 ID=Msa0602360-mRNA-1:exon:10343;Parent=Msa0602360-mRNA-1
chr4_2 exon 45965164 45965282 45965164 ID=Msa0602360-mRNA-1:exon:10342;Parent=Msa0602360-mRNA-1
chr4_2 exon 45966672 45966739 45966672 ID=Msa0602360-mRNA-1:exon:10341;Parent=Msa0602360-mRNA-1
chr4_2 exon 45966816 45967086 45966816 ID=Msa0602360-mRNA-1:exon:10340;Parent=Msa0602360-mRNA-1
chr4_2 five_prime_UTR 45966964 45967086 45966964 ID=Msa0602360-mRNA-1:five_prime_utr;Parent=Msa0602360-mRNA-1
chr4_2 CDS 45966816 45966963 45966816 ID=Msa0602360-mRNA-1:cds;Parent=Msa0602360-mRNA-1
chr4_2 CDS 45966672 45966739 45966672 ID=Msa0602360-mRNA-1:cds;Parent=Msa0602360-mRNA-1
chr4_2 CDS 45965164 45965282 45965164 ID=Msa0602360-mRNA-1:cds;Parent=Msa0602360-mRNA-1
chr4_2 CDS 45965045 45965094 45965045 ID=Msa0602360-mRNA-1:cds;Parent=Msa0602360-mRNA-1
chr4_2 CDS 45964802 45964899 45964802 ID=Msa0602360-mRNA-1:cds;Parent=Msa0602360-mRNA-1
chr4_2 CDS 45964446 45964550 45964446 ID=Msa0602360-mRNA-1:cds;Parent=Msa0602360-mRNA-1
chr4_2 three_prime_UTR 45964003 45964445 45964003 ID=Msa0602360-mRNA-1:three_prime_utr;Parent=Msa0602360-mRNA-1
Gene Sequence

>Msa0602360

ATGGCTCTCAAACTATCAACACTTTATCTCCTTGCTTACAACTCTTTTCAAGCAATTGGATGGTTCGTATCATTAATCATCATTTTGTACAATCTTCTCTCCACTTCCTCCATCACTGGAACTTATGCTTCTGCCGGCACCTTAATTACAATATTTTGTTGGTTCAAGGTTTTCTTCAATGTGCTGCATTCTTGGAAGTTATACACGGTGCCATTGATCATTAGATATTCGCATTATGCTTTCAGTTGCTTGGGAAATTGTCCTTCTTGGATGACCTATATCAGGCATTTTTCTATCTTACTATTCTATATTCTCCATACTGATGGAGAAATGAGGTACACCGCGTTTATTGTGATTTATCCTGTGGGAGTGTTTCCTGGAGAAATATGGTTGATGTACCAGGCGCTTCCAATTATAAAGGAGAAGAATATCTATGCAGATTCCTTTTCAAGCCTCCCATTTAGTTATTATGATTTCCTTAAGGTCCTAATTATAGTTTATCCATTCCTCTGGTTCAAACTATACCTGCATTTGTTCAAGCAGCGGCGTTCAAAACTTTATAAACGCCGTGACAAGAAAAGAGCATAA

Protein sequence

>Msa0602360

MALKLSTLYLLAYNSFQAIGWFVSLIIILYNLLSTSSITGTYASAGTLITIFCWFKVFFNVLHSWKLYTVPLIIRYSHYAFSCLGNCPSWMTYIRHFSILLFYILHTDGEMRYTAFIVIYPVGVFPGEIWLMYQALPIIKEKNIYADSFSSLPFSYYDFLKVLIIVYPFLWFKLYLHLFKQRRSKLYKRRDKKRA*