AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1449140


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1449140 MtrunA17_Chr4g0064131 93.301 209 13 1 1 209 1 208 2.06e-122 345
Msa1449140 MtrunA17_Chr3g0137601 31.963 219 125 8 1 207 1 207 6.50e-29 107
Msa1449140 MtrunA17_Chr1g0183251 30.952 168 63 5 93 207 83 250 4.98e-19 82.8
Msa1449140 MtrunA17_Chr7g0260621 28.834 163 91 4 59 207 44 195 1.69e-18 80.1
Msa1449140 MtrunA17_Chr1g0184791 28.922 204 106 7 34 208 35 228 4.24e-18 79.7
Msa1449140 MtrunA17_Chr1g0166011 29.932 147 75 4 69 207 50 176 7.87e-18 77.8
Msa1449140 MtrunA17_Chr1g0190711 31.646 158 76 6 78 207 82 235 1.28e-16 75.9
Msa1449140 MtrunA17_Chr1g0187961 26.506 166 88 5 62 207 21 172 1.28e-16 74.3
Msa1449140 MtrunA17_Chr5g0411501 27.673 159 82 3 76 207 165 317 1.56e-16 76.6
Msa1449140 MtrunA17_Chr1g0187921 26.380 163 96 3 67 207 58 218 2.59e-16 74.7
Msa1449140 MtrunA17_Chr2g0330951 28.662 157 69 4 93 207 97 252 4.53e-16 74.7
Msa1449140 MtrunA17_Chr6g0486121 31.944 144 66 4 90 207 99 236 4.63e-16 74.3
Msa1449140 MtrunA17_Chr8g0366881 28.125 160 88 3 71 206 173 329 5.63e-16 75.1
Msa1449140 MtrunA17_Chr1g0184801 26.543 162 93 3 60 207 46 195 7.46e-16 72.8
Msa1449140 MtrunA17_Chr7g0260641 29.927 137 72 3 93 208 100 233 1.73e-15 72.8
Msa1449140 MtrunA17_Chr4g0004181 33.884 121 57 3 93 206 55 159 1.82e-15 71.2
Msa1449140 MtrunA17_Chr8g0390281 30.935 139 68 2 93 207 141 275 3.67e-15 72.4
Msa1449140 MtrunA17_Chr5g0428141 30.657 137 69 6 93 207 197 329 3.75e-15 72.8
Msa1449140 MtrunA17_Chr4g0069561 32.000 125 64 4 91 207 70 181 6.92e-15 69.7
Msa1449140 MtrunA17_Chr7g0270851 38.043 92 48 2 124 206 64 155 1.76e-13 65.5
Msa1449140 MtrunA17_Chr1g0209181 31.967 122 68 4 93 206 54 168 3.27e-13 65.1
Msa1449140 MtrunA17_Chr1g0193861 32.500 120 59 4 96 206 64 170 3.64e-13 65.1
Msa1449140 MtrunA17_Chr2g0332141 32.990 97 48 2 130 209 8 104 2.56e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1449140 AT4G32280.1 28.745 247 132 8 1 208 1 242 2.52e-26 102
Msa1449140 AT1G04550.2 35.616 146 61 4 93 205 70 215 1.21e-21 89.4
Msa1449140 AT4G32280.2 43.902 82 43 1 130 208 119 200 1.17e-20 86.3
Msa1449140 AT2G33310.3 31.169 154 62 4 93 207 76 224 6.45e-20 85.1
Msa1449140 AT2G33310.1 31.169 154 62 4 93 207 76 224 6.45e-20 85.1
Msa1449140 AT2G33310.2 31.169 154 62 4 93 207 77 225 6.98e-20 85.1
Msa1449140 AT5G25890.1 32.192 146 93 2 64 207 20 161 7.68e-20 83.2
Msa1449140 AT5G43700.1 29.927 137 78 3 79 207 49 175 2.12e-18 79.7
Msa1449140 AT4G28640.3 29.932 147 71 3 93 207 89 235 2.02e-17 78.2
Msa1449140 AT1G04240.1 31.655 139 77 3 78 207 50 179 2.16e-17 77.0
Msa1449140 AT4G28640.1 29.932 147 71 3 93 207 89 235 2.38e-17 78.2
Msa1449140 AT1G04240.2 31.655 139 77 3 78 207 150 279 3.15e-17 78.6
Msa1449140 AT4G28640.2 29.932 147 71 3 93 207 89 235 6.71e-17 77.8
Msa1449140 AT4G14550.1 30.147 136 72 2 93 207 77 210 8.73e-17 76.3
Msa1449140 AT4G14550.2 30.147 136 72 2 93 207 77 210 9.13e-17 76.3
Msa1449140 AT3G23030.1 26.994 163 84 5 61 207 21 164 1.79e-16 74.3
Msa1449140 AT3G23030.2 26.994 163 84 5 61 207 108 251 5.06e-16 74.7
Msa1449140 AT3G15540.1 33.884 121 63 2 93 206 71 181 5.19e-16 73.6
Msa1449140 AT3G17600.1 30.952 126 75 2 85 206 37 154 6.09e-16 72.4
Msa1449140 AT5G65670.1 30.657 137 69 3 93 206 184 317 6.35e-16 75.5
Msa1449140 AT5G65670.2 30.657 137 69 3 93 206 184 317 6.58e-16 75.5
Msa1449140 AT2G22670.5 32.374 139 67 5 93 207 166 301 2.61e-15 73.6
Msa1449140 AT2G22670.2 32.374 139 67 5 93 207 166 301 2.61e-15 73.6
Msa1449140 AT2G22670.3 32.374 139 67 5 93 207 166 301 2.67e-15 73.6
Msa1449140 AT2G22670.1 32.374 139 67 5 93 207 166 301 2.67e-15 73.6
Msa1449140 AT2G22670.4 32.374 139 67 5 93 207 183 318 3.55e-15 73.2
Msa1449140 AT1G15580.1 33.333 120 58 5 93 206 54 157 9.37e-15 69.3
Msa1449140 AT1G52830.1 31.667 120 61 4 94 206 72 177 2.11e-14 68.9
Msa1449140 AT3G23050.1 28.205 156 85 2 79 207 69 224 3.19e-14 69.7
Msa1449140 AT1G51950.1 27.746 173 87 3 72 207 77 248 3.45e-14 69.7
Msa1449140 AT3G16500.2 27.891 147 74 3 93 207 104 250 1.30e-13 68.2
Msa1449140 AT3G16500.1 27.891 147 74 3 93 207 104 250 1.30e-13 68.2
Msa1449140 AT4G29080.1 27.778 144 75 3 93 207 144 287 1.49e-13 68.6
Msa1449140 AT1G04250.1 27.737 137 69 3 93 207 83 211 2.82e-13 66.6
Msa1449140 AT3G62100.1 38.372 86 45 1 130 207 84 169 9.78e-13 64.3
Msa1449140 AT3G04730.1 24.837 153 72 4 93 207 71 218 1.02e-12 65.5
Msa1449140 AT4G32280.3 26.471 204 109 7 1 168 1 199 1.07e-12 64.7
Msa1449140 AT2G46990.1 37.209 86 46 1 130 207 86 171 2.27e-12 63.2
Msa1449140 AT4G14550.3 29.752 121 62 2 93 192 77 195 3.98e-12 63.2
Msa1449140 AT1G15050.2 37.647 85 46 1 129 206 61 145 8.12e-12 61.2
Msa1449140 AT4G14560.1 32.558 86 50 1 130 207 76 161 1.01e-11 61.2
Msa1449140 AT1G15050.1 37.647 85 46 1 129 206 93 177 1.61e-11 61.2

Find 65 sgRNAs with CRISPR-Local

Find 145 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGTTTGGGTTTCCAATTAA+AGG 0.196606 tig0032436:-29704 Msa1449140:intergenic
TTGCTTTGCTCACCTTTAAT+TGG 0.204563 tig0032436:+29692 Msa1449140:three_prime_UTR
TCTCTTTGAATCATGATAAT+AGG 0.233271 tig0032436:+27596 Msa1449140:CDS
TCTGAGTGGCCAGGAGTTAA+TGG 0.256229 tig0032436:-27688 Msa1449140:intergenic
AATACCCATTGATTAATGTT+TGG 0.284231 tig0032436:-29719 Msa1449140:intergenic
CAAACATGTCCATCAAAGTT+TGG 0.287284 tig0032436:-28096 Msa1449140:intergenic
ATACCCATTGATTAATGTTT+GGG 0.288949 tig0032436:-29718 Msa1449140:intergenic
TACTCTCAACCAAACTTTGA+TGG 0.301864 tig0032436:+28087 Msa1449140:CDS
GAATTACGTGAAGGTGAAAA+TGG 0.315246 tig0032436:+28012 Msa1449140:CDS
TCACAATATGGAGCTTCATT+TGG 0.317095 tig0032436:+27510 Msa1449140:exon
CTCTCTACACAATCACAATA+TGG 0.343546 tig0032436:+27498 Msa1449140:exon
GAGAGAAAGAGTGGGAAGGT+TGG 0.357245 tig0032436:-27662 Msa1449140:intergenic
TAGACCACCACCGAGAAATA+TGG 0.358386 tig0032436:-29862 Msa1449140:intergenic
CACAATATGGAGCTTCATTT+GGG 0.385933 tig0032436:+27511 Msa1449140:exon
ATCAAGACAAAGAAGGTGAT+TGG 0.388129 tig0032436:+28276 Msa1449140:CDS
TTCTTCCTCCTACAATTAAC+CGG 0.390508 tig0032436:-27920 Msa1449140:intergenic
CCCTGCTCTTAAGCAATTTG+AGG 0.399232 tig0032436:-29606 Msa1449140:intergenic
TTCTTGCTCAAGATATTTCA+TGG 0.399762 tig0032436:+28300 Msa1449140:CDS
GATGGCCTCCGGTTAATTGT+AGG 0.427386 tig0032436:+27912 Msa1449140:CDS
GATCACGTGGTCCCCATTGA+TGG 0.439591 tig0032436:+27971 Msa1449140:CDS
CTGAGTGGCCAGGAGTTAAT+GGG 0.451365 tig0032436:-27687 Msa1449140:intergenic
GATGATGAAGAAGCTCTTGT+TGG 0.454535 tig0032436:+27890 Msa1449140:CDS
TAATGGGAGGAGAGAAAGAG+TGG 0.454609 tig0032436:-27671 Msa1449140:intergenic
GAAACCCAAACATTAATCAA+TGG 0.454852 tig0032436:+29714 Msa1449140:three_prime_UTR
TCTCTCCTCCCATTAACTCC+TGG 0.458165 tig0032436:+27679 Msa1449140:CDS
CATAGCTATTTATTAATGAA+AGG 0.459720 tig0032436:-27435 Msa1449140:intergenic
AGAAAGAGTGGGAAGGTTGG+TGG 0.462033 tig0032436:-27659 Msa1449140:intergenic
GAACTTGAAGTCTTAAACGA+TGG 0.468843 tig0032436:-29653 Msa1449140:intergenic
GCCTCAAATTGCTTAAGAGC+AGG 0.470661 tig0032436:+29605 Msa1449140:CDS
ATAGCTATTTATTAATGAAA+GGG 0.475872 tig0032436:-27434 Msa1449140:intergenic
ATGGTTCTCATGATAATCAT+AGG 0.480012 tig0032436:+27990 Msa1449140:CDS
AAATTAACTTAGTCAGAAGT+TGG 0.486091 tig0032436:-29781 Msa1449140:intergenic
ATTATCATGAGAACCATCAA+TGG 0.488136 tig0032436:-27984 Msa1449140:intergenic
AAACCCAAACATTAATCAAT+GGG 0.491770 tig0032436:+29715 Msa1449140:three_prime_UTR
AGCTCTTGTTGGATGGCCTC+CGG 0.493311 tig0032436:+27901 Msa1449140:CDS
TTACTTGGTGATGGTGGTAG+TGG 0.498349 tig0032436:-27749 Msa1449140:intergenic
TGATCAACAACAGTATGAAC+TGG 0.501567 tig0032436:+28250 Msa1449140:CDS
TTGTCCATATTTCTCGGTGG+TGG 0.504778 tig0032436:+29858 Msa1449140:three_prime_UTR
TTATCATGAGAACCATCAAT+GGG 0.508335 tig0032436:-27983 Msa1449140:intergenic
TATTAATTACTTGGTGATGG+TGG 0.510150 tig0032436:-27755 Msa1449140:intergenic
TAATATTAATTACTTGGTGA+TGG 0.522964 tig0032436:-27758 Msa1449140:intergenic
CGGACGAGAATTATTATAAG+TGG 0.529450 tig0032436:-27545 Msa1449140:intergenic
CTGGTTTATCAAGACAAAGA+AGG 0.557412 tig0032436:+28269 Msa1449140:CDS
GGTTGAGAGTATGAAATGAA+TGG 0.558722 tig0032436:-28075 Msa1449140:intergenic
TCATGATCATCTGAGTGGCC+AGG 0.559365 tig0032436:-27697 Msa1449140:intergenic
GGAGGAGAGAAAGAGTGGGA+AGG 0.576479 tig0032436:-27666 Msa1449140:intergenic
AATGGGAGGAGAGAAAGAGT+GGG 0.579242 tig0032436:-27670 Msa1449140:intergenic
ATGAAGAAGCTCTTGTTGGA+TGG 0.580018 tig0032436:+27894 Msa1449140:CDS
CCTCAAATTGCTTAAGAGCA+GGG 0.580023 tig0032436:+29606 Msa1449140:CDS
TATCATGATTCAAAGAGAAG+TGG 0.584987 tig0032436:-27591 Msa1449140:intergenic
TACGTGAAGGTGAAAATGGA+AGG 0.594315 tig0032436:+28016 Msa1449140:CDS
CTCAAATTGCTTAAGAGCAG+GGG 0.598831 tig0032436:+29607 Msa1449140:CDS
GGCCTCCGGTTAATTGTAGG+AGG 0.613414 tig0032436:+27915 Msa1449140:CDS
AGGTGTAGGAATAGCTCGAA+AGG 0.621460 tig0032436:+28036 Msa1449140:CDS
TTAGTAGCAGCAATATCGTA+CGG 0.636596 tig0032436:-27565 Msa1449140:intergenic
GTGAGCAAAGCAAACAACGT+TGG 0.654677 tig0032436:-29682 Msa1449140:intergenic
TTCCTCCTACAATTAACCGG+AGG 0.665193 tig0032436:-27917 Msa1449140:intergenic
AAGGTGAAAATGGAAGGTGT+AGG 0.668997 tig0032436:+28022 Msa1449140:CDS
TGGTTGTCCATATTTCTCGG+TGG 0.670450 tig0032436:+29855 Msa1449140:three_prime_UTR
TAATCATAGGAATTACGTGA+AGG 0.675805 tig0032436:+28003 Msa1449140:CDS
AGTGGCCAGGAGTTAATGGG+AGG 0.697461 tig0032436:-27684 Msa1449140:intergenic
TTGCTCAAGATATTTCATGG+AGG 0.720826 tig0032436:+28303 Msa1449140:CDS
CATGATCATGATCATCTGAG+TGG 0.721603 tig0032436:-27702 Msa1449140:intergenic
AAATGATGTTGAAGATCACG+TGG 0.746908 tig0032436:+27958 Msa1449140:CDS
TATCATGAGAACCATCAATG+GGG 0.763816 tig0032436:-27982 Msa1449130:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACTAATAATATTAATTACT+TGG - tig0032436:27767-27786 Msa1449140:intergenic 10.0%
!! GTACATTAATATTATTTATA+TGG + tig0032436:27821-27840 Msa1449140:intron 10.0%
!! TAGAGATTAAAAAAAATATA+AGG + tig0032436:28534-28553 Msa1449140:intron 10.0%
!!! ATAAGAAAAATATTCTTTTA+AGG + tig0032436:28881-28900 Msa1449140:intron 10.0%
!! AATAAATGATGTATATAATT+TGG + tig0032436:28911-28930 Msa1449140:intron 10.0%
!! GTATAAGAATATAAATTATA+TGG - tig0032436:29109-29128 Msa1449140:intergenic 10.0%
!!! TTTTTTCTTATATTTGAAAT+CGG + tig0032436:29394-29413 Msa1449140:intron 10.0%
!! TTCACATATATTAAAAAAAT+TGG - tig0032436:29442-29461 Msa1449140:intergenic 10.0%
!! ATAGCTATTTATTAATGAAA+GGG - tig0032436:27437-27456 Msa0097230:intergenic 15.0%
!!! ATTAGTAGTACTAATTATTT+TGG - tig0032436:28163-28182 Msa1449140:intergenic 15.0%
!! TTCAATGAATGTTTATAATT+AGG - tig0032436:28370-28389 Msa1449140:intergenic 15.0%
!!! ATTTTTCTTATATTTGAGAA+GGG - tig0032436:28872-28891 Msa1449140:intergenic 15.0%
!!! TATTTTTCTTATATTTGAGA+AGG - tig0032436:28873-28892 Msa1449140:intergenic 15.0%
!!! TTAATTTGTATCTAAAAAGT+TGG + tig0032436:29749-29768 Msa1449140:three_prime_UTR 15.0%
!! CATAGCTATTTATTAATGAA+AGG - tig0032436:27438-27457 Msa0097230:intergenic 20.0%
!!! TAATATTAATTACTTGGTGA+TGG - tig0032436:27761-27780 Msa1449140:intergenic 20.0%
!! AAGTACTAACATTGAAATAT+TGG - tig0032436:27795-27814 Msa1449140:intergenic 20.0%
!! TTGAAAGATGACTTATAATT+AGG - tig0032436:28413-28432 Msa1449140:intergenic 20.0%
!! AAAAAAAATATAAGGAGCAA+AGG + tig0032436:28542-28561 Msa1449140:intron 20.0%
!!! TTGGTTTTTTCTTTTTTGTT+TGG - tig0032436:28582-28601 Msa1449140:intergenic 20.0%
!! AAAAAGAAAAAACCAACATT+AGG + tig0032436:28586-28605 Msa1449140:intron 20.0%
!!! TGTCTTTTTCTTATAAAGTA+AGG + tig0032436:29228-29247 Msa1449140:intron 20.0%
!!! GTCTTTTTCTTATAAAGTAA+GGG + tig0032436:29229-29248 Msa1449140:intron 20.0%
!! AAATGGAATGAAATAATCAT+TGG - tig0032436:29277-29296 Msa1449140:intergenic 20.0%
!! TATTCAATAAACCTAAACAA+TGG + tig0032436:29367-29386 Msa1449140:intron 20.0%
!! GAAAAAAAAATCCATTGTTT+AGG - tig0032436:29381-29400 Msa1449140:intergenic 20.0%
!! TATATGTGAAATATGAAATC+AGG + tig0032436:29452-29471 Msa1449140:intron 20.0%
!! ATATGTGAAATATGAAATCA+GGG + tig0032436:29453-29472 Msa1449140:intron 20.0%
!!! ATTAATCAATGGGTATTTTT+TGG + tig0032436:29725-29744 Msa1449140:three_prime_UTR 20.0%
!!! TTAATCAATGGGTATTTTTT+GGG + tig0032436:29726-29745 Msa1449140:three_prime_UTR 20.0%
!!! AGTAGTAGTTCAATATTTTT+TGG + tig0032436:29835-29854 Msa1449140:three_prime_UTR 20.0%
! TCTCTTTGAATCATGATAAT+AGG + tig0032436:27596-27615 Msa1449140:CDS 25.0%
! TTAGTACTACTAATTAGTTG+AGG + tig0032436:28169-28188 Msa1449140:intron 25.0%
! GTATATATAGTGTATATGCA+CGG + tig0032436:28191-28210 Msa1449140:intron 25.0%
! TGTTTATAATTAGGCATACA+AGG - tig0032436:28361-28380 Msa1449140:intergenic 25.0%
! AGTTTGCATTAAAATGTGTT+AGG + tig0032436:28482-28501 Msa1449140:intron 25.0%
!! AAAGTTGGAGTATTTATTGA+GGG - tig0032436:29171-29190 Msa1449140:intergenic 25.0%
!! AAAAGTTGGAGTATTTATTG+AGG - tig0032436:29172-29191 Msa1449140:intergenic 25.0%
! AAATATGAAATCAGGGTTTA+GGG + tig0032436:29460-29479 Msa1449140:intron 25.0%
! CAAACTTTCTCTAACAATTA+AGG + tig0032436:29505-29524 Msa1449140:intron 25.0%
! CTAAATAAAACTTGTGTGTT+TGG + tig0032436:29553-29572 Msa1449140:intron 25.0%
! AAACCCAAACATTAATCAAT+GGG + tig0032436:29715-29734 Msa1449140:three_prime_UTR 25.0%
!! ATACCCATTGATTAATGTTT+GGG - tig0032436:29721-29740 Msa1449140:intergenic 25.0%
!! AATACCCATTGATTAATGTT+TGG - tig0032436:29722-29741 Msa1449140:intergenic 25.0%
! AAATTAACTTAGTCAGAAGT+TGG - tig0032436:29784-29803 Msa1449140:intergenic 25.0%
TATCATGATTCAAAGAGAAG+TGG - tig0032436:27594-27613 Msa1449140:intergenic 30.0%
!! TATTAATTACTTGGTGATGG+TGG - tig0032436:27758-27777 Msa1449140:intergenic 30.0%
TTATCATGAGAACCATCAAT+GGG - tig0032436:27986-28005 Msa1449140:intergenic 30.0%
ATTATCATGAGAACCATCAA+TGG - tig0032436:27987-28006 Msa1449140:intergenic 30.0%
ATGGTTCTCATGATAATCAT+AGG + tig0032436:27990-28009 Msa1449140:CDS 30.0%
TAATCATAGGAATTACGTGA+AGG + tig0032436:28003-28022 Msa1449140:CDS 30.0%
TCATGTAGTTGGAAATTAAC+AGG + tig0032436:28221-28240 Msa1449140:intron 30.0%
TTCTTGCTCAAGATATTTCA+TGG + tig0032436:28300-28319 Msa1449140:CDS 30.0%
TATCATTAATTAGTGCAAGC+TGG + tig0032436:28330-28349 Msa1449140:intron 30.0%
CATTAAAATGTGTTAGGAGT+TGG + tig0032436:28488-28507 Msa1449140:intron 30.0%
ACTTAACTAAGACCTAATGT+TGG - tig0032436:28601-28620 Msa1449140:intergenic 30.0%
CATGTTAAGCAACCTAAAAA+GGG - tig0032436:29059-29078 Msa1449140:intergenic 30.0%
ACATGTTAAGCAACCTAAAA+AGG - tig0032436:29060-29079 Msa1449140:intergenic 30.0%
! AAGTGACACTCATTTTGTAA+CGG - tig0032436:29137-29156 Msa1449140:intergenic 30.0%
AAATTGTGTGAGAGAAAAGT+TGG - tig0032436:29186-29205 Msa1449140:intergenic 30.0%
GAAATATGAAATCAGGGTTT+AGG + tig0032436:29459-29478 Msa1449140:intron 30.0%
! AGGGTTTAGGGTTTATAATT+AGG + tig0032436:29472-29491 Msa1449140:intron 30.0%
! GGGTTTAGGGTTTATAATTA+GGG + tig0032436:29473-29492 Msa1449140:intron 30.0%
! ATGTTTGGGTTTCCAATTAA+AGG - tig0032436:29707-29726 Msa1449140:intergenic 30.0%
GAAACCCAAACATTAATCAA+TGG + tig0032436:29714-29733 Msa1449140:three_prime_UTR 30.0%
!! TTTTGGTTGTCCATATTTCT+CGG + tig0032436:29852-29871 Msa1449140:three_prime_UTR 30.0%
CTCTCTACACAATCACAATA+TGG + tig0032436:27498-27517 Msa1449140:exon 35.0%
TCACAATATGGAGCTTCATT+TGG + tig0032436:27510-27529 Msa1449140:exon 35.0%
CACAATATGGAGCTTCATTT+GGG + tig0032436:27511-27530 Msa1449140:exon 35.0%
CGGACGAGAATTATTATAAG+TGG - tig0032436:27548-27567 Msa1449140:intergenic 35.0%
TTAGTAGCAGCAATATCGTA+CGG - tig0032436:27568-27587 Msa1449140:intergenic 35.0%
! ACGTAGTTTTTCTCAACTCT+TGG + tig0032436:27621-27640 Msa1449140:CDS 35.0%
TTCTTCCTCCTACAATTAAC+CGG - tig0032436:27923-27942 Msa1449140:intergenic 35.0%
AAATGATGTTGAAGATCACG+TGG + tig0032436:27958-27977 Msa1449140:CDS 35.0%
TATCATGAGAACCATCAATG+GGG - tig0032436:27985-28004 Msa1449140:intergenic 35.0%
GAATTACGTGAAGGTGAAAA+TGG + tig0032436:28012-28031 Msa1449140:CDS 35.0%
! GGTTGAGAGTATGAAATGAA+TGG - tig0032436:28078-28097 Msa1449140:intergenic 35.0%
TACTCTCAACCAAACTTTGA+TGG + tig0032436:28087-28106 Msa1449140:CDS 35.0%
CAAACATGTCCATCAAAGTT+TGG - tig0032436:28099-28118 Msa1449140:intergenic 35.0%
ACGGCATTAATTCATGTAGT+TGG + tig0032436:28210-28229 Msa1449140:intron 35.0%
TGATCAACAACAGTATGAAC+TGG + tig0032436:28250-28269 Msa1449140:CDS 35.0%
CTGGTTTATCAAGACAAAGA+AGG + tig0032436:28269-28288 Msa1449140:CDS 35.0%
ATCAAGACAAAGAAGGTGAT+TGG + tig0032436:28276-28295 Msa1449140:CDS 35.0%
TTGCTCAAGATATTTCATGG+AGG + tig0032436:28303-28322 Msa1449140:CDS 35.0%
AAAATGTGTTAGGAGTTGGA+AGG + tig0032436:28492-28511 Msa1449140:intron 35.0%
AAATATAAGGAGCAAAGGTG+TGG + tig0032436:28547-28566 Msa1449140:intron 35.0%
! ACAACAACCTCTTCTTTTCT+GGG - tig0032436:28687-28706 Msa1449140:intergenic 35.0%
AAAAGAAGAGGTTGTTGTCA+TGG + tig0032436:28689-28708 Msa1449140:intron 35.0%
AGTGAAAGTCTATGTGAACT+AGG + tig0032436:28727-28746 Msa1449140:intron 35.0%
!!! CTAGGCATGGTAAGTTTTTT+TGG + tig0032436:28745-28764 Msa1449140:intron 35.0%
!! AATGTTAATTTGTGCCCTCA+AGG + tig0032436:28936-28955 Msa1449140:intron 35.0%
!! ATGTTAATTTGTGCCCTCAA+GGG + tig0032436:28937-28956 Msa1449140:intron 35.0%
! AATGCAAAGTTGCCCTTTTT+AGG + tig0032436:29044-29063 Msa1449140:intron 35.0%
TTGGCACACAGATTAAGAAA+TGG - tig0032436:29294-29313 Msa1449140:intergenic 35.0%
!! AAGCGACACTCATTTTGAAA+CGG + tig0032436:29320-29339 Msa1449140:intron 35.0%
GAACTTGAAGTCTTAAACGA+TGG - tig0032436:29656-29675 Msa1449140:intergenic 35.0%
TTGCTTTGCTCACCTTTAAT+TGG + tig0032436:29692-29711 Msa1449140:three_prime_UTR 35.0%
CATGATCATGATCATCTGAG+TGG - tig0032436:27705-27724 Msa1449140:intergenic 40.0%
GATGATGAAGAAGCTCTTGT+TGG + tig0032436:27890-27909 Msa1449140:CDS 40.0%
ATGAAGAAGCTCTTGTTGGA+TGG + tig0032436:27894-27913 Msa1449140:CDS 40.0%
TACGTGAAGGTGAAAATGGA+AGG + tig0032436:28016-28035 Msa1449140:CDS 40.0%
! AAGGTGAAAATGGAAGGTGT+AGG + tig0032436:28022-28041 Msa1449140:CDS 40.0%
AATGAAGCCCAGAAAAGAAG+AGG + tig0032436:28677-28696 Msa1449140:intron 40.0%
! GACAACAACCTCTTCTTTTC+TGG - tig0032436:28688-28707 Msa1449140:intergenic 40.0%
AAGTCTATGTGAACTAGGCA+TGG + tig0032436:28732-28751 Msa1449140:intron 40.0%
TTGCTTAACATGTGCCCTTA+GGG + tig0032436:29067-29086 Msa1449140:intron 40.0%
!! CATGTTAACTTGTGCCCTAA+GGG - tig0032436:29084-29103 Msa1449140:intergenic 40.0%
!! TCATGTTAACTTGTGCCCTA+AGG - tig0032436:29085-29104 Msa1449140:intergenic 40.0%
!! GACACTCATTTTGTAACGGA+AGG - tig0032436:29133-29152 Msa1449140:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + tig0032436:29324-29343 Msa1449140:intron 40.0%
CCTCAAATTGCTTAAGAGCA+GGG + tig0032436:29606-29625 Msa1449140:CDS 40.0%
CTCAAATTGCTTAAGAGCAG+GGG + tig0032436:29607-29626 Msa1449140:CDS 40.0%
AATGGGAGGAGAGAAAGAGT+GGG - tig0032436:27673-27692 Msa1449140:intergenic 45.0%
TAATGGGAGGAGAGAAAGAG+TGG - tig0032436:27674-27693 Msa1449140:intergenic 45.0%
!! TTACTTGGTGATGGTGGTAG+TGG - tig0032436:27752-27771 Msa1449140:intergenic 45.0%
TTCCTCCTACAATTAACCGG+AGG - tig0032436:27920-27939 Msa1449140:intergenic 45.0%
AGGTGTAGGAATAGCTCGAA+AGG + tig0032436:28036-28055 Msa1449140:CDS 45.0%
TGTGTTAGGAGTTGGAAGGA+TGG + tig0032436:28496-28515 Msa1449140:intron 45.0%
GTGTTAGGAGTTGGAAGGAT+GGG + tig0032436:28497-28516 Msa1449140:intron 45.0%
TCCTTAACATGTGCCCTTGA+GGG - tig0032436:28953-28972 Msa1449140:intergenic 45.0%
TTCCTTAACATGTGCCCTTG+AGG - tig0032436:28954-28973 Msa1449140:intergenic 45.0%
GTTGCTTAACATGTGCCCTT+AGG + tig0032436:29066-29085 Msa1449140:intron 45.0%
!! ATGAGTGTCGCTTTACGCTT+TGG - tig0032436:29313-29332 Msa1449140:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + tig0032436:29323-29342 Msa1449140:intron 45.0%
GCCTCAAATTGCTTAAGAGC+AGG + tig0032436:29605-29624 Msa1449140:CDS 45.0%
CCCTGCTCTTAAGCAATTTG+AGG - tig0032436:29609-29628 Msa1449140:intergenic 45.0%
GTGAGCAAAGCAAACAACGT+TGG - tig0032436:29685-29704 Msa1449140:intergenic 45.0%
TGGTTGTCCATATTTCTCGG+TGG + tig0032436:29855-29874 Msa1449140:three_prime_UTR 45.0%
TTGTCCATATTTCTCGGTGG+TGG + tig0032436:29858-29877 Msa1449140:three_prime_UTR 45.0%
TAGACCACCACCGAGAAATA+TGG - tig0032436:29865-29884 Msa1449140:intergenic 45.0%
!! TTAATTTATTTGATTAATTT+AGG + tig0032436:27858-27877 Msa1449140:intron 5.0%
!! TATAAGAATATAAATTATAT+GGG - tig0032436:29108-29127 Msa1449140:intergenic 5.0%
AGAAAGAGTGGGAAGGTTGG+TGG - tig0032436:27662-27681 Msa1449140:intergenic 50.0%
GAGAGAAAGAGTGGGAAGGT+TGG - tig0032436:27665-27684 Msa1449140:intergenic 50.0%
TCTCTCCTCCCATTAACTCC+TGG + tig0032436:27679-27698 Msa1449140:CDS 50.0%
CTGAGTGGCCAGGAGTTAAT+GGG - tig0032436:27690-27709 Msa1449140:intergenic 50.0%
TCTGAGTGGCCAGGAGTTAA+TGG - tig0032436:27691-27710 Msa1449140:intergenic 50.0%
TCATGATCATCTGAGTGGCC+AGG - tig0032436:27700-27719 Msa1449140:intergenic 50.0%
GATGGCCTCCGGTTAATTGT+AGG + tig0032436:27912-27931 Msa1449140:CDS 50.0%
GGAGGAGAGAAAGAGTGGGA+AGG - tig0032436:27669-27688 Msa1449140:intergenic 55.0%
AGTGGCCAGGAGTTAATGGG+AGG - tig0032436:27687-27706 Msa1449140:intergenic 55.0%
AGCTCTTGTTGGATGGCCTC+CGG + tig0032436:27901-27920 Msa1449140:CDS 55.0%
GGCCTCCGGTTAATTGTAGG+AGG + tig0032436:27915-27934 Msa1449140:CDS 55.0%
GATCACGTGGTCCCCATTGA+TGG + tig0032436:27971-27990 Msa1449140:CDS 55.0%
! GCCCTCAAGGGCACATGTTA+AGG + tig0032436:28949-28968 Msa1449140:intron 55.0%
Chromosome Type Strat End Strand Name
tig0032436 gene 27315 29885 27315 ID=Msa1449140;Name=Msa1449140
tig0032436 mRNA 27315 29885 27315 ID=Msa1449140-mRNA-1;Parent=Msa1449140;Name=Msa1449140-mRNA-1;_AED=0.10;_eAED=0.10;_QI=202|1|1|1|1|1|4|252|209
tig0032436 exon 27315 27767 27315 ID=Msa1449140-mRNA-1:exon:16788;Parent=Msa1449140-mRNA-1
tig0032436 exon 27880 28124 27880 ID=Msa1449140-mRNA-1:exon:16789;Parent=Msa1449140-mRNA-1
tig0032436 exon 28243 28324 28243 ID=Msa1449140-mRNA-1:exon:16790;Parent=Msa1449140-mRNA-1
tig0032436 exon 29582 29885 29582 ID=Msa1449140-mRNA-1:exon:16791;Parent=Msa1449140-mRNA-1
tig0032436 five_prime_UTR 27315 27516 27315 ID=Msa1449140-mRNA-1:five_prime_utr;Parent=Msa1449140-mRNA-1
tig0032436 CDS 27517 27767 27517 ID=Msa1449140-mRNA-1:cds;Parent=Msa1449140-mRNA-1
tig0032436 CDS 27880 28124 27880 ID=Msa1449140-mRNA-1:cds;Parent=Msa1449140-mRNA-1
tig0032436 CDS 28243 28324 28243 ID=Msa1449140-mRNA-1:cds;Parent=Msa1449140-mRNA-1
tig0032436 CDS 29582 29633 29582 ID=Msa1449140-mRNA-1:cds;Parent=Msa1449140-mRNA-1
tig0032436 three_prime_UTR 29634 29885 29634 ID=Msa1449140-mRNA-1:three_prime_utr;Parent=Msa1449140-mRNA-1
Gene Sequence

>Msa1449140

ATGGAGCTTCATTTGGGTCTTGCTCTCTCCACTTATAATAATTCTCGTCCGTACGATATTGCTGCTACTAATAGCCACTTCTCTTTGAATCATGATAATAGGAAACGTAGTTTTTCTCAACTCTTGGAGCATGCAGCAGAAACCACCAACCTTCCCACTCTTTCTCTCCTCCCATTAACTCCTGGCCACTCAGATGATCATGATCATGATGATCAACACTGCTCTCACAGCTCCACTACCACCATCACCAAGAGCAATGAAGATGATGAAGAAGCTCTTGTTGGATGGCCTCCGGTTAATTGTAGGAGGAAGAAAATTCGTTCTAATGAAAATGATGTTGAAGATCACGTGGTCCCCATTGATGGTTCTCATGATAATCATAGGAATTACGTGAAGGTGAAAATGGAAGGTGTAGGAATAGCTCGAAAGGTTAATCTTAGCATGCACCATTCATTTCATACTCTCAACCAAACTTTGATGGACATGTTTGAAAAATGTGATCATGATCAACAACAGTATGAACTGGTTTATCAAGACAAAGAAGGTGATTGGCTTCTTGCTCAAGATATTTCATGGAGAAGTTTCATTGAGTGTGCGCAACGCCTCAAATTGCTTAAGAGCAGGGGATAG

Protein sequence

>Msa1449140

MELHLGLALSTYNNSRPYDIAATNSHFSLNHDNRKRSFSQLLEHAAETTNLPTLSLLPLTPGHSDDHDHDDQHCSHSSTTTITKSNEDDEEALVGWPPVNCRRKKIRSNENDVEDHVVPIDGSHDNHRNYVKVKMEGVGIARKVNLSMHHSFHTLNQTLMDMFEKCDHDQQQYELVYQDKEGDWLLAQDISWRSFIECAQRLKLLKSRG*