AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1301560


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1301560 MtrunA17_Chr4g0064961 97.009 468 14 0 1 468 1 468 0.0 940
Msa1301560 MtrunA17_Chr1g0149571 59.819 443 137 7 62 463 43 485 0.0 516
Msa1301560 MtrunA17_Chr3g0137381 64.225 355 122 4 113 464 14 366 1.97e-160 458
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1301560 AT4G32060.1 62.716 405 127 5 64 445 67 470 1.39e-175 502
Msa1301560 AT4G32060.2 62.873 369 113 5 64 409 67 434 1.06e-154 447

Find 106 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAGTTATGGAAAAGTTAA+TGG 0.221348 8_3:-63554845 Msa1301560:CDS
CCTTTCATCACCACCATTTC+CGG 0.227693 8_3:+63556925 None:intergenic
GTGTTAATGATTGTAATATT+AGG 0.274489 8_3:-63554187 Msa1301560:three_prime_UTR
TTGGGACCACCTTAGGCTTT+TGG 0.283646 8_3:-63556850 Msa1301560:CDS
GAAGACATTTCCTCACGTTT+TGG 0.303320 8_3:-63554559 Msa1301560:CDS
CAATGTAATGTAACTTGTTT+AGG 0.310605 8_3:+63557141 None:intergenic
AGAAGGGTGGGATATGCATT+TGG 0.312493 8_3:-63554447 Msa1301560:three_prime_UTR
TGCAAAATCCTTGGCCGAAA+TGG 0.315325 8_3:+63555033 None:intergenic
CCCTATGTTGAATCTGCATT+TGG 0.326332 8_3:+63554399 None:intergenic
TAGTTTCTGAGAGGTGAAAA+TGG 0.330278 8_3:+63554472 None:intergenic
TTTCTTAGAACAATAACTTC+TGG 0.334367 8_3:-63556884 Msa1301560:CDS
TTAAGAGGGGAACAGTTTCC+CGG 0.335893 8_3:-63555941 Msa1301560:CDS
GCCACTGAAAAGCTGGATTC+TGG 0.336535 8_3:+63555682 None:intergenic
GTGAAAACACCGATAGAAAA+TGG 0.342485 8_3:-63555412 Msa1301560:CDS
GAAGGGTGGGATATGCATTT+GGG 0.350598 8_3:-63554446 Msa1301560:three_prime_UTR
ATGTAACTTGTTTAGGTTGT+AGG 0.352050 8_3:+63557148 None:intergenic
TGGTCATCTTTATCTTCTCC+TGG 0.361095 8_3:-63556824 Msa1301560:CDS
TTCTTAGAACAATAACTTCT+GGG 0.376814 8_3:-63556883 Msa1301560:CDS
AAATCCAAGTTTCTCTTCAA+TGG 0.378137 8_3:-63556731 Msa1301560:intron
CAGATTCAACATAGGGAAAC+AGG 0.389528 8_3:-63554392 Msa1301560:three_prime_UTR
CTTCTGGGACTGTGGTTGTT+GGG 0.392623 8_3:-63556868 Msa1301560:CDS
GTGGTTGTTGGGACCACCTT+AGG 0.398220 8_3:-63556857 Msa1301560:CDS
GTTAGAGAAGGTTCTTTAAG+AGG 0.402225 8_3:-63555956 Msa1301560:CDS
TTCTCTAACACGTCTTGATT+CGG 0.416028 8_3:+63555970 None:intergenic
CAATAAAAGAGGAACCATTT+CGG 0.419212 8_3:-63555047 Msa1301560:CDS
TTTAAAAGCCACTGAAAAGC+TGG 0.420902 8_3:+63555675 None:intergenic
GCAAAAGTATTTGTATATAC+AGG 0.424468 8_3:+63554251 None:intergenic
GATAGAAAATGGCGGTCTCT+TGG 0.430949 8_3:-63555401 Msa1301560:CDS
TCTCTGGCCATATTCAGTTA+TGG 0.434138 8_3:-63554857 Msa1301560:CDS
TGGAAAAGTTAATGGAGTAT+TGG 0.435781 8_3:-63554837 Msa1301560:CDS
TGTTTGATATTGACAGTAAC+GGG 0.436083 8_3:-63555651 Msa1301560:intron
ACATAAACAAACTGTTGGAT+AGG 0.455071 8_3:-63554979 Msa1301560:CDS
CTCTTTGACACAAATAATGA+TGG 0.456116 8_3:-63555884 Msa1301560:CDS
TTGCAAATCTACATTGCTAC+AGG 0.472197 8_3:+63554356 None:intergenic
ACTTCTGGGACTGTGGTTGT+TGG 0.473411 8_3:-63556869 Msa1301560:CDS
CAAGGATAGTGCAAAATCCT+TGG 0.474280 8_3:+63555024 None:intergenic
CCGGAAATGGTGGTGATGAA+AGG 0.477987 8_3:-63556925 Msa1301560:CDS
AGACAAAAGAATTACGTTTG+AGG 0.485400 8_3:-63554924 Msa1301560:CDS
TCGAGTACTTTGCATCGAAT+CGG 0.486747 8_3:-63556063 Msa1301560:CDS
AAGAGGAACCATTTCGGCCA+AGG 0.487222 8_3:-63555041 Msa1301560:CDS
GATTCGGAAGGAGGAAATAC+AGG 0.487672 8_3:+63555986 None:intergenic
CACTATGATCACAATAAAAG+AGG 0.488832 8_3:-63555058 Msa1301560:CDS
TTCATAACTAATCTAGTCGT+TGG 0.489157 8_3:+63554159 None:intergenic
GTTACCATTGAAGAGAAACT+TGG 0.490627 8_3:+63556727 None:intergenic
CTTGCAAAGTCCTCCAGAAA+AGG 0.491838 8_3:-63556196 Msa1301560:intron
TGTTGGTTGAACTGTGTAAA+GGG 0.494222 8_3:-63554517 Msa1301560:CDS
ACCTCTCAGAAACTAAAAGA+AGG 0.495468 8_3:-63554464 Msa1301560:three_prime_UTR
GAAGTTGCAGTCCTTCTCTC+TGG 0.500761 8_3:-63554873 Msa1301560:CDS
ATGACGTTGAGCGTTGTGAT+TGG 0.501893 8_3:+63556981 None:intergenic
AACAATAACTTCTGGGACTG+TGG 0.505115 8_3:-63556876 Msa1301560:CDS
TTAGAGAAGGTTCTTTAAGA+GGG 0.506873 8_3:-63555955 Msa1301560:CDS
TGTTATGTCGTAGAGTCTGT+TGG 0.508095 8_3:+63557020 None:intergenic
CAATCACATAAACAAACTGT+TGG 0.511555 8_3:-63554984 Msa1301560:CDS
CCAAATGCAGATTCAACATA+GGG 0.520513 8_3:-63554399 Msa1301560:three_prime_UTR
CACAGAGACGGACGACGCCT+CGG 0.521637 8_3:-63555436 Msa1301560:CDS
AAGAGAAGAAAACGTTTGAG+AGG 0.527446 8_3:+63557189 None:intergenic
AGGTTGTAGGTAGAAATTTG+AGG 0.528830 8_3:+63557161 None:intergenic
CGGAAATGGTGGTGATGAAA+GGG 0.529236 8_3:-63556924 Msa1301560:CDS
GTCTTTGATGCTAACCGTGA+TGG 0.529666 8_3:-63554625 Msa1301560:CDS
TTGGGAATTTGATAACATGT+TGG 0.531352 8_3:-63554534 Msa1301560:CDS
TTTGCATCGAATCGGATCCC+TGG 0.540228 8_3:-63556055 Msa1301560:CDS
CCCAAGAAAACAACATGCTA+AGG 0.544582 8_3:+63557053 None:intergenic
AGACTCTACGACATAACATA+AGG 0.546354 8_3:-63557015 Msa1301560:CDS
ATGTTTGATATTGACAGTAA+CGG 0.548784 8_3:-63555652 Msa1301560:CDS
ATGGCACGCATCAAATCTGC+AGG 0.550914 8_3:+63556013 None:intergenic
ACCAAATGCAGATTCAACAT+AGG 0.551699 8_3:-63554400 Msa1301560:three_prime_UTR
GGATCGCATTCTAACGAGCC+GGG 0.556208 8_3:+63555923 None:intergenic
ATATTACAATCATTAACACT+AGG 0.557647 8_3:+63554191 None:intergenic
CATAAACAAACTGTTGGATA+GGG 0.563117 8_3:-63554978 Msa1301560:CDS
CTCAGAAACTAAAAGAAGGG+TGG 0.565109 8_3:-63554460 Msa1301560:three_prime_UTR
TGCAAAGAGTTATTAGCACC+AGG 0.565535 8_3:+63556806 None:intergenic
AGACAGAAGCCATGTCATCA+TGG 0.565536 8_3:+63554320 None:intergenic
AGGATCGCATTCTAACGAGC+CGG 0.567310 8_3:+63555922 None:intergenic
TTTCTCTGATTATGCTACTG+AGG 0.570594 8_3:-63556780 Msa1301560:CDS
ACACGTCTTGATTCGGAAGG+AGG 0.584298 8_3:+63555977 None:intergenic
AGAGAAGAAAACGTTTGAGA+GGG 0.585027 8_3:+63557190 None:intergenic
TCAGAAACTAAAAGAAGGGT+GGG 0.586401 8_3:-63554459 Msa1301560:three_prime_UTR
ATGTTGGTTGAACTGTGTAA+AGG 0.593116 8_3:-63554518 Msa1301560:CDS
ACTGAATATGGCCAGAGAGA+AGG 0.593953 8_3:+63554862 None:intergenic
TTTAGACATGAATTCATCTG+TGG 0.595345 8_3:+63554083 None:intergenic
GAATCAAGACGTGTTAGAGA+AGG 0.599612 8_3:-63555968 Msa1301560:CDS
CCTCTCAGAAACTAAAAGAA+GGG 0.603062 8_3:-63554463 Msa1301560:three_prime_UTR
GAATCGGATCCCTGGTGGCG+AGG 0.604717 8_3:-63556047 Msa1301560:CDS
TATTACAATCATTAACACTA+GGG 0.610201 8_3:+63554192 None:intergenic
CAAGGGGCTAACCACAGAGA+CGG 0.611869 8_3:-63555448 Msa1301560:CDS
TGCGATCTCAAAACAGACAA+GGG 0.611915 8_3:-63555465 Msa1301560:CDS
TGACCAATACCAAAAGCCTA+AGG 0.612300 8_3:+63556841 None:intergenic
TAGAGAAGGTTCTTTAAGAG+GGG 0.613134 8_3:-63555954 Msa1301560:CDS
TGTCAACAGCGAAATAGACA+TGG 0.617587 8_3:-63555515 Msa1301560:intron
TCTTTGATGCTAACCGTGAT+GGG 0.618328 8_3:-63554624 Msa1301560:CDS
CTAACACGTCTTGATTCGGA+AGG 0.633782 8_3:+63555974 None:intergenic
TTTGATGGGTCCGGAAATGG+TGG 0.634496 8_3:-63556935 Msa1301560:CDS
CTTAAGACAACTGCATGATG+AGG 0.635950 8_3:-63555320 Msa1301560:intron
ATGCGATCTCAAAACAGACA+AGG 0.640169 8_3:-63555466 Msa1301560:CDS
AGGAGGAAATACAGGAACAA+TGG 0.641182 8_3:+63555994 None:intergenic
ATTCCCAAATCCAAAACGTG+AGG 0.644135 8_3:+63554549 None:intergenic
ACTATCAAACCATGATGACA+TGG 0.647117 8_3:-63554329 Msa1301560:three_prime_UTR
GATGTCTGCAGATGCAACCA+AGG 0.647201 8_3:+63555006 None:intergenic
GCATCGAATCGGATCCCTGG+TGG 0.649676 8_3:-63556052 Msa1301560:CDS
TTGCACTTAAGCTCCCATCA+CGG 0.666778 8_3:+63554611 None:intergenic
TGTAATGTCATGTAGGTATG+CGG 0.673164 8_3:-63554688 Msa1301560:intron
GACCCATCAAAAGAGCTCAA+CGG 0.680319 8_3:+63556947 None:intergenic
CCAATACCAAAAGCCTAAGG+TGG 0.680665 8_3:+63556844 None:intergenic
GCGATCTCAAAACAGACAAG+GGG 0.683071 8_3:-63555464 Msa1301560:CDS
CGTTGTGATTGGCTACACAA+CGG 0.703111 8_3:+63556992 None:intergenic
AAAACACCGATAGAAAATGG+CGG 0.758494 8_3:-63555409 Msa1301560:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTTTAATTGTTAATTTATT+TGG - chr8_3:63554966-63554985 Msa1301560:CDS 10.0%
!!! AATTGATAATCAAAGATTTT+TGG - chr8_3:63554748-63554767 Msa1301560:intron 15.0%
!! AATTGTTAATTTATTTGGTT+TGG - chr8_3:63554971-63554990 Msa1301560:CDS 15.0%
!! TCATATATTAAAACATTCAA+TGG + chr8_3:63555173-63555192 None:intergenic 15.0%
!!! ATAACAAAATATCTTGTTTT+TGG - chr8_3:63555535-63555554 Msa1301560:intron 15.0%
!! TGCATATTATAATTTATTTG+AGG - chr8_3:63556030-63556049 Msa1301560:CDS 15.0%
!!! ATATATTTTTAGGCATAATA+GGG + chr8_3:63556511-63556530 None:intergenic 15.0%
!!! AATATATTTTTAGGCATAAT+AGG + chr8_3:63556512-63556531 None:intergenic 15.0%
!!! ACTACTGTAAATATATTTTT+AGG + chr8_3:63556521-63556540 None:intergenic 15.0%
!! AGATGAATAACTTATTATTA+CGG - chr8_3:63556562-63556581 Msa1301560:intron 15.0%
!! TTTGAATCTGTTACTATATA+TGG - chr8_3:63554603-63554622 Msa1301560:CDS 20.0%
!!! TAGTATTAAAGTTGCTTTTT+TGG - chr8_3:63554677-63554696 Msa1301560:intron 20.0%
!!! AGTATTAAAGTTGCTTTTTT+GGG - chr8_3:63554678-63554697 Msa1301560:intron 20.0%
!!! TATCAATTTAAAGCTAATGT+AGG + chr8_3:63554736-63554755 None:intergenic 20.0%
!!! TTTTTATAGACAAATGTTAG+TGG - chr8_3:63554883-63554902 Msa1301560:CDS 20.0%
!! AATTCCATCAATAAAATTGA+AGG + chr8_3:63555719-63555738 None:intergenic 20.0%
!! AAATTATAATATGCAGATCT+TGG + chr8_3:63556025-63556044 None:intergenic 20.0%
!!! ATTTGAATGTAGATAACTTT+TGG - chr8_3:63556133-63556152 Msa1301560:intron 20.0%
!! TATTACAATCATTAACACTA+GGG + chr8_3:63557089-63557108 None:intergenic 20.0%
!! ATATTACAATCATTAACACT+AGG + chr8_3:63557090-63557109 None:intergenic 20.0%
!! GTGTTAATGATTGTAATATT+AGG - chr8_3:63557091-63557110 Msa1301560:five_prime_UTR 20.0%
!!! CAATGTAATGTAACTTGTTT+AGG + chr8_3:63554140-63554159 None:intergenic 25.0%
! TTTCTTAGAACAATAACTTC+TGG - chr8_3:63554394-63554413 Msa1301560:three_prime_UTR 25.0%
! TTCTTAGAACAATAACTTCT+GGG - chr8_3:63554395-63554414 Msa1301560:three_prime_UTR 25.0%
! TGAAACTTCATCAATTTCAT+GGG + chr8_3:63554642-63554661 None:intergenic 25.0%
! TTGAAACTTCATCAATTTCA+TGG + chr8_3:63554643-63554662 None:intergenic 25.0%
!!! GTATTAAAGTTGCTTTTTTG+GGG - chr8_3:63554679-63554698 Msa1301560:intron 25.0%
!!! TATTAAAGTTGCTTTTTTGG+GGG - chr8_3:63554680-63554699 Msa1301560:intron 25.0%
! TAATGTAGGAAGAAAACATT+AGG + chr8_3:63554722-63554741 None:intergenic 25.0%
! TTGAATACTAGGAATATGAA+GGG - chr8_3:63554829-63554848 Msa1301560:CDS 25.0%
! AATTAAACTGCAAGAATTCA+TGG + chr8_3:63554955-63554974 None:intergenic 25.0%
!! AAGAGCATAAAAAATTCAGA+AGG + chr8_3:63555379-63555398 None:intergenic 25.0%
! ATGTTTGATATTGACAGTAA+CGG - chr8_3:63555626-63555645 Msa1301560:intron 25.0%
!! ATGCAAACTACATTAAGTTT+TGG - chr8_3:63555693-63555712 Msa1301560:CDS 25.0%
!!! GAGTATTTTTTTGGAAAAGA+TGG - chr8_3:63555899-63555918 Msa1301560:CDS 25.0%
!! TAGTTAGATTCTGTGTTATT+AGG - chr8_3:63556073-63556092 Msa1301560:intron 25.0%
! AAAGATCTTTGCAATCTTTA+AGG + chr8_3:63556102-63556121 None:intergenic 25.0%
!! AACTTTTCCATAACTGAATA+TGG + chr8_3:63556431-63556450 None:intergenic 25.0%
! TTCAGTTATGGAAAAGTTAA+TGG - chr8_3:63556433-63556452 Msa1301560:intron 25.0%
!!! GCAAAAGTATTTGTATATAC+AGG + chr8_3:63557030-63557049 None:intergenic 25.0%
!!! TCTTAGCTTTTGTTTCTATT+TGG - chr8_3:63557053-63557072 Msa1301560:exon 25.0%
!! ATGTAACTTGTTTAGGTTGT+AGG + chr8_3:63554133-63554152 None:intergenic 30.0%
AAATCCAAGTTTCTCTTCAA+TGG - chr8_3:63554547-63554566 Msa1301560:CDS 30.0%
!!! ATTAAAGTTGCTTTTTTGGG+GGG - chr8_3:63554681-63554700 Msa1301560:intron 30.0%
! AATAGACTTACTAGCTTCTT+AGG - chr8_3:63554778-63554797 Msa1301560:intron 30.0%
!! ACACTATTGAGTTGAATACT+AGG - chr8_3:63554818-63554837 Msa1301560:CDS 30.0%
GTTGAATACTAGGAATATGA+AGG - chr8_3:63554828-63554847 Msa1301560:CDS 30.0%
TGTTAGTGGTTAATGTGTTA+AGG - chr8_3:63554897-63554916 Msa1301560:CDS 30.0%
! ACAAGATTGATTACCTTTTC+TGG + chr8_3:63555098-63555117 None:intergenic 30.0%
ATTCAATGGTAACAATTTGC+TGG + chr8_3:63555159-63555178 None:intergenic 30.0%
! TTAGAGAAGGTTCTTTAAGA+GGG - chr8_3:63555323-63555342 Msa1301560:CDS 30.0%
CTCTTTGACACAAATAATGA+TGG - chr8_3:63555394-63555413 Msa1301560:CDS 30.0%
TCATATTTCTCATGACAAAC+AGG + chr8_3:63555472-63555491 None:intergenic 30.0%
!!! ATATCTTGTTTTTGGATACC+AGG - chr8_3:63555543-63555562 Msa1301560:intron 30.0%
AGTGACAAAAAATATGTACC+TGG + chr8_3:63555564-63555583 None:intergenic 30.0%
TGTTTGATATTGACAGTAAC+GGG - chr8_3:63555627-63555646 Msa1301560:intron 30.0%
!! TTGGCCTTCAATTTTATTGA+TGG - chr8_3:63555712-63555731 Msa1301560:CDS 30.0%
CACTATGATCACAATAAAAG+AGG - chr8_3:63556220-63556239 Msa1301560:CDS 30.0%
CAATAAAAGAGGAACCATTT+CGG - chr8_3:63556231-63556250 Msa1301560:CDS 30.0%
CAATCACATAAACAAACTGT+TGG - chr8_3:63556294-63556313 Msa1301560:intron 30.0%
ACATAAACAAACTGTTGGAT+AGG - chr8_3:63556299-63556318 Msa1301560:intron 30.0%
CATAAACAAACTGTTGGATA+GGG - chr8_3:63556300-63556319 Msa1301560:intron 30.0%
! ATTCTTTTGTCTCTTAGATG+TGG + chr8_3:63556346-63556365 None:intergenic 30.0%
AGACAAAAGAATTACGTTTG+AGG - chr8_3:63556354-63556373 Msa1301560:intron 30.0%
TGGAAAAGTTAATGGAGTAT+TGG - chr8_3:63556441-63556460 Msa1301560:intron 30.0%
! TTGGGAATTTGATAACATGT+TGG - chr8_3:63556744-63556763 Msa1301560:CDS 30.0%
TTCATAACTAATCTAGTCGT+TGG + chr8_3:63557122-63557141 None:intergenic 30.0%
TTTAGACATGAATTCATCTG+TGG + chr8_3:63557198-63557217 None:intergenic 30.0%
AGAGAAGAAAACGTTTGAGA+GGG + chr8_3:63554091-63554110 None:intergenic 35.0%
AAGAGAAGAAAACGTTTGAG+AGG + chr8_3:63554092-63554111 None:intergenic 35.0%
AGGTTGTAGGTAGAAATTTG+AGG + chr8_3:63554120-63554139 None:intergenic 35.0%
!!! ACCTTAGCATGTTGTTTTCT+TGG - chr8_3:63554224-63554243 Msa1301560:three_prime_UTR 35.0%
!!! CCTTAGCATGTTGTTTTCTT+GGG - chr8_3:63554225-63554244 Msa1301560:three_prime_UTR 35.0%
!!! CTTAGCATGTTGTTTTCTTG+GGG - chr8_3:63554226-63554245 Msa1301560:three_prime_UTR 35.0%
AGACTCTACGACATAACATA+AGG - chr8_3:63554263-63554282 Msa1301560:three_prime_UTR 35.0%
TTTCTCTGATTATGCTACTG+AGG - chr8_3:63554498-63554517 Msa1301560:exon 35.0%
GTTACCATTGAAGAGAAACT+TGG + chr8_3:63554554-63554573 None:intergenic 35.0%
! TTACTAGCTTCTTAGGACTT+AGG - chr8_3:63554785-63554804 Msa1301560:intron 35.0%
! TACTAGCTTCTTAGGACTTA+GGG - chr8_3:63554786-63554805 Msa1301560:intron 35.0%
! TAGGAATATGAAGGGTATGA+TGG - chr8_3:63554837-63554856 Msa1301560:CDS 35.0%
! AGATTGATTACCTTTTCTGG+AGG + chr8_3:63555095-63555114 None:intergenic 35.0%
TTCTCTAACACGTCTTGATT+CGG + chr8_3:63555311-63555330 None:intergenic 35.0%
GTTAGAGAAGGTTCTTTAAG+AGG - chr8_3:63555322-63555341 Msa1301560:CDS 35.0%
! TAGAGAAGGTTCTTTAAGAG+GGG - chr8_3:63555324-63555343 Msa1301560:CDS 35.0%
!!! TGATGGACTCATTTCTTTTG+CGG - chr8_3:63555411-63555430 Msa1301560:CDS 35.0%
TTTAAAAGCCACTGAAAAGC+TGG + chr8_3:63555606-63555625 None:intergenic 35.0%
TCCTTTCCTTTCGTAAATGT+CGG - chr8_3:63555661-63555680 Msa1301560:CDS 35.0%
TAACTTCCGACATTTACGAA+AGG + chr8_3:63555670-63555689 None:intergenic 35.0%
GTGAAAACACCGATAGAAAA+TGG - chr8_3:63555866-63555885 Msa1301560:CDS 35.0%
AAAACACCGATAGAAAATGG+CGG - chr8_3:63555869-63555888 Msa1301560:CDS 35.0%
!!! GGTCTCTTGGAGTATTTTTT+TGG - chr8_3:63555890-63555909 Msa1301560:CDS 35.0%
TGTAATGTCATGTAGGTATG+CGG - chr8_3:63556590-63556609 Msa1301560:intron 35.0%
!! ATTTCCTCACGTTTTGGATT+TGG - chr8_3:63556725-63556744 Msa1301560:intron 35.0%
!! TTTCCTCACGTTTTGGATTT+GGG - chr8_3:63556726-63556745 Msa1301560:intron 35.0%
! ATGTTGGTTGAACTGTGTAA+AGG - chr8_3:63556760-63556779 Msa1301560:CDS 35.0%
! TGTTGGTTGAACTGTGTAAA+GGG - chr8_3:63556761-63556780 Msa1301560:CDS 35.0%
! TAGTTTCTGAGAGGTGAAAA+TGG + chr8_3:63556809-63556828 None:intergenic 35.0%
ACCTCTCAGAAACTAAAAGA+AGG - chr8_3:63556814-63556833 Msa1301560:CDS 35.0%
CCTCTCAGAAACTAAAAGAA+GGG - chr8_3:63556815-63556834 Msa1301560:CDS 35.0%
TCAGAAACTAAAAGAAGGGT+GGG - chr8_3:63556819-63556838 Msa1301560:CDS 35.0%
!! GCATTTGGGTTTTACAGTAA+TGG - chr8_3:63556846-63556865 Msa1301560:CDS 35.0%
ACCAAATGCAGATTCAACAT+AGG - chr8_3:63556878-63556897 Msa1301560:CDS 35.0%
CCAAATGCAGATTCAACATA+GGG - chr8_3:63556879-63556898 Msa1301560:CDS 35.0%
TTGCAAATCTACATTGCTAC+AGG + chr8_3:63556925-63556944 None:intergenic 35.0%
ACTATCAAACCATGATGACA+TGG - chr8_3:63556949-63556968 Msa1301560:CDS 35.0%
CCCAAGAAAACAACATGCTA+AGG + chr8_3:63554228-63554247 None:intergenic 40.0%
TGTTATGTCGTAGAGTCTGT+TGG + chr8_3:63554261-63554280 None:intergenic 40.0%
!! AACAATAACTTCTGGGACTG+TGG - chr8_3:63554402-63554421 Msa1301560:three_prime_UTR 40.0%
TGACCAATACCAAAAGCCTA+AGG + chr8_3:63554440-63554459 None:intergenic 40.0%
TGGTCATCTTTATCTTCTCC+TGG - chr8_3:63554454-63554473 Msa1301560:three_prime_UTR 40.0%
TGCAAAGAGTTATTAGCACC+AGG + chr8_3:63554475-63554494 None:intergenic 40.0%
! ATGAAGGGTATGATGGAAGT+AGG - chr8_3:63554844-63554863 Msa1301560:CDS 40.0%
! ATGACACCTTGTTTGATTCC+AGG - chr8_3:63555189-63555208 Msa1301560:intron 40.0%
CGAAAACCTGGAATCAAACA+AGG + chr8_3:63555198-63555217 None:intergenic 40.0%
! ATGCAAAGTACTCGAAAACC+TGG + chr8_3:63555210-63555229 None:intergenic 40.0%
TCGAGTACTTTGCATCGAAT+CGG - chr8_3:63555215-63555234 Msa1301560:intron 40.0%
AGGAGGAAATACAGGAACAA+TGG + chr8_3:63555287-63555306 None:intergenic 40.0%
GAATCAAGACGTGTTAGAGA+AGG - chr8_3:63555310-63555329 Msa1301560:intron 40.0%
TCCGACATTTACGAAAGGAA+AGG + chr8_3:63555665-63555684 None:intergenic 40.0%
TGTCAACAGCGAAATAGACA+TGG - chr8_3:63555763-63555782 Msa1301560:intron 40.0%
ATGCGATCTCAAAACAGACA+AGG - chr8_3:63555812-63555831 Msa1301560:intron 40.0%
TGCGATCTCAAAACAGACAA+GGG - chr8_3:63555813-63555832 Msa1301560:intron 40.0%
!! AAGAGACCGCCATTTTCTAT+CGG + chr8_3:63555878-63555897 None:intergenic 40.0%
CTTAAGACAACTGCATGATG+AGG - chr8_3:63555958-63555977 Msa1301560:CDS 40.0%
CAAGGATAGTGCAAAATCCT+TGG + chr8_3:63556257-63556276 None:intergenic 40.0%
! CAAGGATTTTGCACTATCCT+TGG - chr8_3:63556255-63556274 Msa1301560:intron 40.0%
! TGAGGAGTTCAAAGCTTTTG+CGG - chr8_3:63556372-63556391 Msa1301560:intron 40.0%
TCTCTGGCCATATTCAGTTA+TGG - chr8_3:63556421-63556440 Msa1301560:intron 40.0%
! TTTTCAAAGAGCAGCATCTC+AGG - chr8_3:63556474-63556493 Msa1301560:intron 40.0%
GGTCTCATGTAATGTCATGT+AGG - chr8_3:63556583-63556602 Msa1301560:intron 40.0%
TCTTTGATGCTAACCGTGAT+GGG - chr8_3:63556654-63556673 Msa1301560:intron 40.0%
! GAAGACATTTCCTCACGTTT+TGG - chr8_3:63556719-63556738 Msa1301560:intron 40.0%
ATTCCCAAATCCAAAACGTG+AGG + chr8_3:63556732-63556751 None:intergenic 40.0%
!!! CCCTTCTTTTAGTTTCTGAG+AGG + chr8_3:63556818-63556837 None:intergenic 40.0%
CTCAGAAACTAAAAGAAGGG+TGG - chr8_3:63556818-63556837 Msa1301560:CDS 40.0%
CCCTATGTTGAATCTGCATT+TGG + chr8_3:63556882-63556901 None:intergenic 40.0%
CAGATTCAACATAGGGAAAC+AGG - chr8_3:63556886-63556905 Msa1301560:CDS 40.0%
! CGTTGTGATTGGCTACACAA+CGG + chr8_3:63554289-63554308 None:intergenic 45.0%
! ATGACGTTGAGCGTTGTGAT+TGG + chr8_3:63554300-63554319 None:intergenic 45.0%
! TCTCCGTTGAGCTCTTTTGA+TGG - chr8_3:63554328-63554347 Msa1301560:three_prime_UTR 45.0%
! CTCCGTTGAGCTCTTTTGAT+GGG - chr8_3:63554329-63554348 Msa1301560:three_prime_UTR 45.0%
GACCCATCAAAAGAGCTCAA+CGG + chr8_3:63554334-63554353 None:intergenic 45.0%
!! TTGAGCTCTTTTGATGGGTC+CGG - chr8_3:63554334-63554353 Msa1301560:three_prime_UTR 45.0%
!! TCTTTTGATGGGTCCGGAAA+TGG - chr8_3:63554340-63554359 Msa1301560:three_prime_UTR 45.0%
CCTTTCATCACCACCATTTC+CGG + chr8_3:63554356-63554375 None:intergenic 45.0%
! CGGAAATGGTGGTGATGAAA+GGG - chr8_3:63554354-63554373 Msa1301560:three_prime_UTR 45.0%
CCAATACCAAAAGCCTAAGG+TGG + chr8_3:63554437-63554456 None:intergenic 45.0%
! CCACCTTAGGCTTTTGGTAT+TGG - chr8_3:63554434-63554453 Msa1301560:three_prime_UTR 45.0%
!! TTTGGTTTGGCGCAAACACT+TGG - chr8_3:63554984-63555003 Msa1301560:CDS 45.0%
!! TTGGTTTGGCGCAAACACTT+GGG - chr8_3:63554985-63555004 Msa1301560:CDS 45.0%
CTTGCAAAGTCCTCCAGAAA+AGG - chr8_3:63555082-63555101 Msa1301560:CDS 45.0%
TCATAAAAACCTCGCCACCA+GGG + chr8_3:63555243-63555262 None:intergenic 45.0%
GATTCGGAAGGAGGAAATAC+AGG + chr8_3:63555295-63555314 None:intergenic 45.0%
!! CTAACACGTCTTGATTCGGA+AGG + chr8_3:63555307-63555326 None:intergenic 45.0%
TTAAGAGGGGAACAGTTTCC+CGG - chr8_3:63555337-63555356 Msa1301560:CDS 45.0%
! ACCAGAATCCAGCTTTTCAG+TGG - chr8_3:63555595-63555614 Msa1301560:intron 45.0%
GCGATCTCAAAACAGACAAG+GGG - chr8_3:63555814-63555833 Msa1301560:intron 45.0%
GATAGAAAATGGCGGTCTCT+TGG - chr8_3:63555877-63555896 Msa1301560:CDS 45.0%
AAAGATGCTGCAAGACCATG+AGG + chr8_3:63556001-63556020 None:intergenic 45.0%
TGCAAAATCCTTGGCCGAAA+TGG + chr8_3:63556248-63556267 None:intergenic 45.0%
ACTGAATATGGCCAGAGAGA+AGG + chr8_3:63556419-63556438 None:intergenic 45.0%
GTCTTTGATGCTAACCGTGA+TGG - chr8_3:63556653-63556672 Msa1301560:intron 45.0%
TTGCACTTAAGCTCCCATCA+CGG + chr8_3:63556670-63556689 None:intergenic 45.0%
AGAAGGGTGGGATATGCATT+TGG - chr8_3:63556831-63556850 Msa1301560:CDS 45.0%
GAAGGGTGGGATATGCATTT+GGG - chr8_3:63556832-63556851 Msa1301560:CDS 45.0%
AGACAGAAGCCATGTCATCA+TGG + chr8_3:63556961-63556980 None:intergenic 45.0%
! TTTGATGGGTCCGGAAATGG+TGG - chr8_3:63554343-63554362 Msa1301560:three_prime_UTR 50.0%
! CCGGAAATGGTGGTGATGAA+AGG - chr8_3:63554353-63554372 Msa1301560:three_prime_UTR 50.0%
!! ACTTCTGGGACTGTGGTTGT+TGG - chr8_3:63554409-63554428 Msa1301560:three_prime_UTR 50.0%
!! CTTCTGGGACTGTGGTTGTT+GGG - chr8_3:63554410-63554429 Msa1301560:three_prime_UTR 50.0%
! TTGGGACCACCTTAGGCTTT+TGG - chr8_3:63554428-63554447 Msa1301560:three_prime_UTR 50.0%
TTTGCATCGAATCGGATCCC+TGG - chr8_3:63555223-63555242 Msa1301560:intron 50.0%
GTCATAAAAACCTCGCCACC+AGG + chr8_3:63555244-63555263 None:intergenic 50.0%
ATGGCACGCATCAAATCTGC+AGG + chr8_3:63555268-63555287 None:intergenic 50.0%
!! ACACGTCTTGATTCGGAAGG+AGG + chr8_3:63555304-63555323 None:intergenic 50.0%
AGGATCGCATTCTAACGAGC+CGG + chr8_3:63555359-63555378 None:intergenic 50.0%
GCCACTGAAAAGCTGGATTC+TGG + chr8_3:63555599-63555618 None:intergenic 50.0%
TGTGAGCCTCTCAAACCTCA+TGG - chr8_3:63555983-63556002 Msa1301560:CDS 50.0%
GCAAGACCATGAGGTTTGAG+AGG + chr8_3:63555992-63556011 None:intergenic 50.0%
AAGAGGAACCATTTCGGCCA+AGG - chr8_3:63556237-63556256 Msa1301560:CDS 50.0%
GATGTCTGCAGATGCAACCA+AGG + chr8_3:63556275-63556294 None:intergenic 50.0%
GAAGTTGCAGTCCTTCTCTC+TGG - chr8_3:63556405-63556424 Msa1301560:intron 50.0%
GTGGTTGTTGGGACCACCTT+AGG - chr8_3:63554421-63554440 Msa1301560:three_prime_UTR 55.0%
GGATCGCATTCTAACGAGCC+GGG + chr8_3:63555358-63555377 None:intergenic 55.0%
CAAGGGGCTAACCACAGAGA+CGG - chr8_3:63555830-63555849 Msa1301560:intron 55.0%
!! CTATCGGTGTTTTCACGCCG+AGG + chr8_3:63555862-63555881 None:intergenic 55.0%
GCATCGAATCGGATCCCTGG+TGG - chr8_3:63555226-63555245 Msa1301560:intron 60.0%
! GAATCGGATCCCTGGTGGCG+AGG - chr8_3:63555231-63555250 Msa1301560:intron 65.0%
CACAGAGACGGACGACGCCT+CGG - chr8_3:63555842-63555861 Msa1301560:intron 65.0%
!! CGAGGCGTCGTCCGTCTCTG+TGG + chr8_3:63555844-63555863 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 63554083 63557217 63554083 ID=Msa1301560;Name=Msa1301560
chr8_3 mRNA 63554083 63557217 63554083 ID=Msa1301560-mRNA-1;Parent=Msa1301560;Name=Msa1301560-mRNA-1;_AED=0.10;_eAED=0.10;_QI=149|1|1|1|1|1|7|424|468
chr8_3 exon 63554083 63554695 63554083 ID=Msa1301560-mRNA-1:exon:19074;Parent=Msa1301560-mRNA-1
chr8_3 exon 63554805 63555101 63554805 ID=Msa1301560-mRNA-1:exon:19073;Parent=Msa1301560-mRNA-1
chr8_3 exon 63555321 63555528 63555321 ID=Msa1301560-mRNA-1:exon:19072;Parent=Msa1301560-mRNA-1
chr8_3 exon 63555652 63555735 63555652 ID=Msa1301560-mRNA-1:exon:19071;Parent=Msa1301560-mRNA-1
chr8_3 exon 63555866 63556089 63555866 ID=Msa1301560-mRNA-1:exon:19070;Parent=Msa1301560-mRNA-1
chr8_3 exon 63556197 63556264 63556197 ID=Msa1301560-mRNA-1:exon:19069;Parent=Msa1301560-mRNA-1
chr8_3 exon 63556732 63557217 63556732 ID=Msa1301560-mRNA-1:exon:19068;Parent=Msa1301560-mRNA-1
chr8_3 five_prime_UTR 63557069 63557217 63557069 ID=Msa1301560-mRNA-1:five_prime_utr;Parent=Msa1301560-mRNA-1
chr8_3 CDS 63556732 63557068 63556732 ID=Msa1301560-mRNA-1:cds;Parent=Msa1301560-mRNA-1
chr8_3 CDS 63556197 63556264 63556197 ID=Msa1301560-mRNA-1:cds;Parent=Msa1301560-mRNA-1
chr8_3 CDS 63555866 63556089 63555866 ID=Msa1301560-mRNA-1:cds;Parent=Msa1301560-mRNA-1
chr8_3 CDS 63555652 63555735 63555652 ID=Msa1301560-mRNA-1:cds;Parent=Msa1301560-mRNA-1
chr8_3 CDS 63555321 63555528 63555321 ID=Msa1301560-mRNA-1:cds;Parent=Msa1301560-mRNA-1
chr8_3 CDS 63554805 63555101 63554805 ID=Msa1301560-mRNA-1:cds;Parent=Msa1301560-mRNA-1
chr8_3 CDS 63554507 63554695 63554507 ID=Msa1301560-mRNA-1:cds;Parent=Msa1301560-mRNA-1
chr8_3 three_prime_UTR 63554083 63554506 63554083 ID=Msa1301560-mRNA-1:three_prime_utr;Parent=Msa1301560-mRNA-1
Gene Sequence

>Msa1301560

ATGTTGTTTTCTTGGGGAAGAAGATTCCAACAGACTCTACGACATAACATAAGGCCGTTGTGTAGCCAATCACAACGCTCAACGTCATCGTCTTCTTCTCCGTTGAGCTCTTTTGATGGGTCCGGAAATGGTGGTGATGAAAGGGTTAGAGATTTTGAGTATTTTCTTAGAACAATAACTTCTGGGACTGTGGTTGTTGGGACCACCTTAGGCTTTTGGTATTGGTCATCTTTATCTTCTCCTGGTGCTAATAACTCTTTGCATTCTTTCTCTGATTATGCTACTGAGGATCAGTTTCAACAAAACTATCAAAATAAATCCAAGTTTCTCTTCAATGATAGTTATCGAAGAAGAGTATTCTTCAACTACGAAAAACGTCTTCGCTTGCAAAGTCCTCCAGAAAAGGTTTTCGAGTACTTTGCATCGAATCGGATCCCTGGTGGCGAGGTTTTTATGACACCTGCAGATTTGATGCGTGCCATTGTTCCTGTATTTCCTCCTTCCGAATCAAGACGTGTTAGAGAAGGTTCTTTAAGAGGGGAACAGTTTCCCGGCTCGTTAGAATGCGATCCTTCTGAATTTTTTATGCTCTTTGACACAAATAATGATGGACTCATTTCTTTTGCGGAGTACATATTTTTTGTCACTCTTCTCAGCATACCAGAATCCAGCTTTTCAGTGGCTTTTAAAATGTTTGATATTGACAGTAACGGCGAAATAGACATGGAAGAATTCAAGAAAGTGATGACGTTGATGCGATCTCAAAACAGACAAGGGGCTAACCACAGAGACGGACGACGCCTCGGCGTGAAAACACCGATAGAAAATGGCGGTCTCTTGGAGTATTTTTTTGGAAAAGATGGAAAAGATTGCTTACAACATGACAAATTTGTTCAATTCTTAAGACAACTGCATGATGAGATCTTGAGATTAGAATTTTCTCACTATGATCACAATAAAAGAGGAACCATTTCGGCCAAGGATTTTGCACTATCCTTGGTTGCATCTGCAGACATCAATCACATAAACAAACTGTTGGATAGGGTCGACGAATTAGACAATGATCCACATCTAAGAGACAAAAGAATTACGTTTGAGGAGTTCAAAGCTTTTGCGGAATTGCGCAAGAAGTTGCAGTCCTTCTCTCTGGCCATATTCAGTTATGGAAAAGTTAATGGAGTATTGGCAAAAAATGATTTTCAAAGAGCAGCATCTCAGGTATGCGGCGTCGATATTACAGAGAATGTACTTGACATAATTTTTCATGTCTTTGATGCTAACCGTGATGGGAGCTTAAGTGCAAGCGAGTTTGTTCGAGTTATACAAAGAAGAGAAGACATTTCCTCACGTTTTGGATTTGGGAATTTGATAACATGTTGGTTGAACTGTGTAAAGGGTAAATGTTAA

Protein sequence

>Msa1301560

MLFSWGRRFQQTLRHNIRPLCSQSQRSTSSSSSPLSSFDGSGNGGDERVRDFEYFLRTITSGTVVVGTTLGFWYWSSLSSPGANNSLHSFSDYATEDQFQQNYQNKSKFLFNDSYRRRVFFNYEKRLRLQSPPEKVFEYFASNRIPGGEVFMTPADLMRAIVPVFPPSESRRVREGSLRGEQFPGSLECDPSEFFMLFDTNNDGLISFAEYIFFVTLLSIPESSFSVAFKMFDIDSNGEIDMEEFKKVMTLMRSQNRQGANHRDGRRLGVKTPIENGGLLEYFFGKDGKDCLQHDKFVQFLRQLHDEILRLEFSHYDHNKRGTISAKDFALSLVASADINHINKLLDRVDELDNDPHLRDKRITFEEFKAFAELRKKLQSFSLAIFSYGKVNGVLAKNDFQRAASQVCGVDITENVLDIIFHVFDANRDGSLSASEFVRVIQRREDISSRFGFGNLITCWLNCVKGKC*