AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1461860


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1461860 MtrunA17_Chr5g0414031 93.399 303 15 3 1 302 32 330 0.0 531
Msa1461860 MtrunA17_Chr5g0413991 87.356 87 11 0 216 302 20 106 3.37e-50 161
Msa1461860 MtrunA17_Chr5g0414001 52.486 181 36 5 4 184 152 282 2.30e-48 163
Msa1461860 MtrunA17_Chr5g0414011 87.143 70 9 0 233 302 1 70 4.03e-39 132
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1461860 AT1G24040.3 50.641 312 139 6 2 300 3 312 1.72e-100 298
Msa1461860 AT1G24040.2 50.641 312 139 6 2 300 3 312 1.72e-100 298
Msa1461860 AT1G24040.1 50.641 312 139 6 2 300 3 312 1.72e-100 298

Find 135 sgRNAs with CRISPR-Local

Find 314 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCTGCCACTTTCAAATTAA+AGG 0.112147 tig0041768:-6653 None:intergenic
ACACATTAATATACCCTTTC+GGG 0.235023 tig0041768:-2925 None:intergenic
ATTGGTTTGGTGTATATATA+TGG 0.247486 tig0041768:+6956 Msa1461860:three_prime_UTR
AAGTTTAGACATTAGAATTA+TGG 0.252110 tig0041768:-7082 None:intergenic
TATAGAGGAAATGGTGTTAA+TGG 0.254472 tig0041768:+3022 Msa1461860:CDS
GAATTATGGACAAATCTATT+TGG 0.256353 tig0041768:-7068 None:intergenic
ATCTGTTAGGGTTTGGGATT+GGG 0.260019 tig0041768:-2720 None:intergenic
GAAATTTCTGCGAGTGGTTT+TGG 0.263428 tig0041768:-2627 None:intergenic
AAAGAGACCTGTTGTGTTAC+AGG 0.269323 tig0041768:+6393 Msa1461860:three_prime_UTR
AGAATAATTCTGGTGTTAAT+TGG 0.269679 tig0041768:-2507 None:intergenic
GGAGAATGGAGATTGGTTTC+AGG 0.273984 tig0041768:+6341 Msa1461860:three_prime_UTR
ATACTTGTGCTGATGTTAAT+TGG 0.284151 tig0041768:+6938 Msa1461860:three_prime_UTR
GGGTTTGTTGAGGGGAAGTG+GGG 0.295210 tig0041768:-2660 None:intergenic
GGTGGAGAGGTGGTGGAGGG+TGG 0.304784 tig0041768:-2786 None:intergenic
GAAGGAATCTGTTAGGGTTT+GGG 0.335979 tig0041768:-2726 None:intergenic
GGGGTTTGTTGAGGGGAAGT+GGG 0.336254 tig0041768:-2661 None:intergenic
CAAATATAAGGCTTATCTTT+CGG 0.336668 tig0041768:-3139 None:intergenic
GGTTTGGGATTGGGAGGAAG+AGG 0.338102 tig0041768:-2711 None:intergenic
CCCTCAAATCCGGCACCGTT+TGG 0.340126 tig0041768:+2825 Msa1461860:CDS
AACACATTAATATACCCTTT+CGG 0.344759 tig0041768:-2926 None:intergenic
GGAAGGAATCTGTTAGGGTT+TGG 0.349371 tig0041768:-2727 None:intergenic
GTGGTGGAGGGTGGTGAGTT+CGG 0.353044 tig0041768:-2777 None:intergenic
GGCTTATCTTTCGGCGGATC+CGG 0.353217 tig0041768:-3130 None:intergenic
GTTTGAGGAAGGAATCTGTT+AGG 0.353565 tig0041768:-2733 None:intergenic
ATGAGGAACTAAGTCCATTA+TGG 0.354775 tig0041768:-6868 None:intergenic
TTGGGAGGAAGAGGAGGAGG+AGG 0.354971 tig0041768:-2702 None:intergenic
ACAGCCATGTTACAAATATA+AGG 0.355727 tig0041768:-3151 None:intergenic
GGATTGGGAGGAAGAGGAGG+AGG 0.356009 tig0041768:-2705 None:intergenic
GCTGTCAGTCTCTTTCTCTT+AGG 0.361531 tig0041768:+6754 Msa1461860:three_prime_UTR
AGAGGTAGGTGGAGAGGTGG+TGG 0.366726 tig0041768:-2793 None:intergenic
TTGGGATTGGGAGGAAGAGG+AGG 0.366955 tig0041768:-2708 None:intergenic
GGAGGAAGAGGAGGAGGAGG+AGG 0.373138 tig0041768:-2699 None:intergenic
AGACAACATTTATGTGTTCA+AGG 0.375671 tig0041768:+6162 Msa1461860:three_prime_UTR
GGTAGGTGGAGAGGTGGTGG+AGG 0.383109 tig0041768:-2790 None:intergenic
TGTGCTGATGTTAATTGGTT+TGG 0.388795 tig0041768:+6943 Msa1461860:three_prime_UTR
TCTTCATTCCCACAACATAA+TGG 0.390187 tig0041768:+2529 Msa1461860:exon
GGTTTGTTGAGGGGAAGTGG+GGG 0.390542 tig0041768:-2659 None:intergenic
AATCTGTTAGGGTTTGGGAT+TGG 0.394837 tig0041768:-2721 None:intergenic
CCTCAAATCCGGCACCGTTT+GGG 0.400069 tig0041768:+2826 Msa1461860:CDS
CCCAAACGGTGCCGGATTTG+AGG 0.402104 tig0041768:-2826 None:intergenic
ACCTTTAATTTGAAAGTGGC+AGG 0.420741 tig0041768:+6652 Msa1461860:three_prime_UTR
GGGAATGAAGAGAATAATTC+TGG 0.424474 tig0041768:-2517 None:intergenic
GTCTACTTCTACCACACCTT+CGG 0.425828 tig0041768:-6791 None:intergenic
AATTGGTGACGGTGGTGGTT+TGG 0.431624 tig0041768:-2490 None:intergenic
AATACACATAAAATTTGCTC+TGG 0.436805 tig0041768:+6570 Msa1461860:three_prime_UTR
TATATATTTCTCTTATCTGT+AGG 0.440142 tig0041768:+6370 Msa1461860:three_prime_UTR
TCTCCCTTCAGGAGGGGCAT+TGG 0.444220 tig0041768:+5885 Msa1461860:intron
GAGGAGTTTGATGCCGCATA+TGG 0.455455 tig0041768:+2982 Msa1461860:CDS
ATGGCATCATGTTCACCAAT+TGG 0.456064 tig0041768:-2444 None:intergenic
CCAAACGGTGCCGGATTTGA+GGG 0.458538 tig0041768:-2825 None:intergenic
TAATTCTACTCTTCCGTCGC+CGG 0.460000 tig0041768:+3111 Msa1461860:CDS
TCATTTACCTGTAACACAAC+AGG 0.460609 tig0041768:-6400 None:intergenic
GTTTACTGGAGAATGGAGAT+TGG 0.464299 tig0041768:+6334 Msa1461860:three_prime_UTR
CAAGCGAGGAACTGATTTCT+CGG 0.465423 tig0041768:+5925 Msa1461860:CDS
TACACACACACCCTCAAATC+CGG 0.467839 tig0041768:+2815 Msa1461860:CDS
TCTTTCAGCCAGGATTGGTA+TGG 0.468462 tig0041768:-6693 None:intergenic
ACCAATTGGAACTAGTGTTC+TGG 0.468489 tig0041768:-2430 None:intergenic
TGCGTCTCTGCAACAACAGC+AGG 0.469429 tig0041768:-6058 None:intergenic
ACCAGAACACTAGTTCCAAT+TGG 0.471113 tig0041768:+2429 Msa1461860:five_prime_UTR
ATTTCTCGGATGAGTTCATC+AGG 0.474442 tig0041768:+5939 Msa1461860:CDS
TGAGGAATTTACCTGGTTTG+AGG 0.481394 tig0041768:-2748 None:intergenic
TTTGAGGAAGGAATCTGTTA+GGG 0.483960 tig0041768:-2732 None:intergenic
TTGTTTCAGCAATGGTATCA+AGG 0.485729 tig0041768:+6302 Msa1461860:intron
TTCAACCTTATCATCACCCT+TGG 0.487256 tig0041768:-6813 None:intergenic
GTAGACCAAGGGTGATGATA+AGG 0.487843 tig0041768:+6808 Msa1461860:three_prime_UTR
TGGAGCTTTCCATCGGTCAA+TGG 0.488831 tig0041768:-7048 None:intergenic
TGAAAGAAAATAATAATGCT+AGG 0.490110 tig0041768:+6709 Msa1461860:three_prime_UTR
CATGGCACGTTTGTTTCTGA+AGG 0.497482 tig0041768:-6119 None:intergenic
ATAAGGTTGAAGAATAGAAA+AGG 0.497657 tig0041768:+6825 Msa1461860:three_prime_UTR
ATCAACCTTTAATTTGAAAG+TGG 0.498105 tig0041768:+6648 Msa1461860:three_prime_UTR
TAATTTCTGTATGTGCATCA+AGG 0.498958 tig0041768:+6617 Msa1461860:three_prime_UTR
CTGTGGATAAATCTCTTAGA+AGG 0.499813 tig0041768:+3170 Msa1461860:CDS
GAGGAGGAGTAGAGTTTGAA+GGG 0.501235 tig0041768:-2683 None:intergenic
CTATTGAACCATACCAATCC+TGG 0.502209 tig0041768:+6685 Msa1461860:three_prime_UTR
CCTTCAGGAGGGGCATTGGA+TGG 0.505384 tig0041768:+5889 Msa1461860:intron
GTGTTAATTGGTGACGGTGG+TGG 0.507189 tig0041768:-2495 None:intergenic
TTATATTTGTAACATGGCTG+TGG 0.509146 tig0041768:+3153 Msa1461860:CDS
ATCTATTTGGAGCTTTCCAT+CGG 0.510726 tig0041768:-7055 None:intergenic
TACTCGAACCCAAACGGTGC+CGG 0.515116 tig0041768:-2834 None:intergenic
CATTGGATGGCATCTTCTAA+AGG 0.517341 tig0041768:+5902 Msa1461860:CDS
GTAGGTGGAGAGGTGGTGGA+GGG 0.517978 tig0041768:-2789 None:intergenic
GGAGGAGGAGTAGAGTTTGA+AGG 0.518472 tig0041768:-2684 None:intergenic
CGCTATTGTATGCTTGCTTG+CGG 0.520895 tig0041768:+2877 Msa1461860:CDS
GAAAGAAAATAATAATGCTA+GGG 0.523301 tig0041768:+6710 Msa1461860:three_prime_UTR
TGAAACAGTATTTGATTGAA+CGG 0.524045 tig0041768:+2960 Msa1461860:CDS
TTTGAAAGTGGCAGGCACAT+TGG 0.524645 tig0041768:+6660 Msa1461860:three_prime_UTR
GGAGGAGTAGAGTTTGAAGG+GGG 0.536412 tig0041768:-2681 None:intergenic
TGTAGAGGTAGGTGGAGAGG+TGG 0.538759 tig0041768:-2796 None:intergenic
GAAGAGGAAATGCAGTTGGC+TGG 0.547866 tig0041768:+3055 Msa1461860:CDS
AATCGATGATGTTCCCGAAA+GGG 0.553380 tig0041768:+2912 Msa1461860:CDS
GAATTTACCTGGTTTGAGGA+AGG 0.554517 tig0041768:-2744 None:intergenic
TTGGAACTAGTGTTCTGGTA+AGG 0.554720 tig0041768:-2425 None:intergenic
AGCTGTGGCCATTATGTTGT+GGG 0.555166 tig0041768:-2537 None:intergenic
GAGGGTGTGTGTGTAGAGGT+AGG 0.555175 tig0041768:-2807 None:intergenic
TTTGATGATCTTACAAGATG+AGG 0.555846 tig0041768:-6885 None:intergenic
TCTTTCGGCGGATCCGGCGA+CGG 0.556296 tig0041768:-3124 None:intergenic
GGAAATGGTGTTAATGGTGA+TGG 0.561718 tig0041768:+3028 Msa1461860:CDS
CTTTCACGTGGCCGAAGGTG+TGG 0.561849 tig0041768:+6780 Msa1461860:three_prime_UTR
AGGAGGAGTAGAGTTTGAAG+GGG 0.569010 tig0041768:-2682 None:intergenic
GTGTGTAGAGGTAGGTGGAG+AGG 0.570455 tig0041768:-2799 None:intergenic
TTACGAATATTAAAGATGCA+TGG 0.570868 tig0041768:+6545 Msa1461860:three_prime_UTR
ACGCATTACTCGAACCCAAA+CGG 0.571049 tig0041768:-2840 None:intergenic
CACACCTTCGGCCACGTGAA+AGG 0.572439 tig0041768:-6779 None:intergenic
CTAGTGTTCTGGTAAGGATG+TGG 0.573070 tig0041768:-2419 None:intergenic
GGTACCTTTCACGTGGCCGA+AGG 0.576737 tig0041768:+6775 Msa1461860:three_prime_UTR
GCAATCAACGTTGCCATATG+CGG 0.581561 tig0041768:-2995 None:intergenic
ACAGATTCCTTCCTCAAACC+AGG 0.591655 tig0041768:+2737 Msa1461860:CDS
TGTTAGGGTTTGGGATTGGG+AGG 0.593758 tig0041768:-2717 None:intergenic
GTGTTTGTGAGGAATTTACC+TGG 0.595004 tig0041768:-2755 None:intergenic
TGGTGAGTTCGGTGTTTGTG+AGG 0.598575 tig0041768:-2766 None:intergenic
TGGTGGTGATGAGGTTGAAG+CGG 0.600126 tig0041768:-2601 None:intergenic
GAGGAGTAGAGTTTGAAGGG+GGG 0.606592 tig0041768:-2680 None:intergenic
TACTCATAGTCATTAGAACA+TGG 0.612730 tig0041768:-6137 None:intergenic
GAAAGAGAAATTTCTGCGAG+TGG 0.613884 tig0041768:-2633 None:intergenic
ATATAAGGCTTATCTTTCGG+CGG 0.617990 tig0041768:-3136 None:intergenic
GAAAGAGAGTGAAAGAGCTG+TGG 0.621573 tig0041768:-2552 None:intergenic
TCTGAAGGCATACTTAAGAG+AGG 0.626310 tig0041768:-6104 None:intergenic
GGTGTGTGTGTAGAGGTAGG+TGG 0.633554 tig0041768:-2804 None:intergenic
TAAGCCTTATATTTGTAACA+TGG 0.633641 tig0041768:+3147 Msa1461860:CDS
GAATCGATGATGTTCCCGAA+AGG 0.633948 tig0041768:+2911 Msa1461860:CDS
TAATGGTGATGGTGAAGAAG+AGG 0.637013 tig0041768:+3039 Msa1461860:CDS
ATTCTGGTGTTAATTGGTGA+CGG 0.638358 tig0041768:-2501 None:intergenic
GAGCTGTGGCCATTATGTTG+TGG 0.639860 tig0041768:-2538 None:intergenic
TCTCTTAGGTACCTTTCACG+TGG 0.641995 tig0041768:+6768 Msa1461860:three_prime_UTR
AAAGAAAATAATAATGCTAG+GGG 0.649762 tig0041768:+6711 Msa1461860:three_prime_UTR
ATTTGAGGGTGTGTGTGTAG+AGG 0.650216 tig0041768:-2811 None:intergenic
TGAAGAAGAGGAAATGCAGT+TGG 0.653928 tig0041768:+3051 Msa1461860:CDS
GCATCTTCTAAAGGCAAGCG+AGG 0.659909 tig0041768:+5911 Msa1461860:CDS
TGAGAAGAAGAGAAGTAACA+TGG 0.660209 tig0041768:-2463 None:intergenic
GTGTGGTAGAAGTAGACCAA+GGG 0.671408 tig0041768:+6797 Msa1461860:three_prime_UTR
ACAAGAGCACCATTGACCGA+TGG 0.679665 tig0041768:+7039 Msa1461860:three_prime_UTR
GGTGTGGTAGAAGTAGACCA+AGG 0.685219 tig0041768:+6796 Msa1461860:three_prime_UTR
AACAGTATTTGATTGAACGG+AGG 0.685549 tig0041768:+2963 Msa1461860:CDS
AAGAAAATAATAATGCTAGG+GGG 0.716639 tig0041768:+6712 Msa1461860:three_prime_UTR
CTGGTGTTAATTGGTGACGG+TGG 0.716949 tig0041768:-2498 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATGTAATTAATTTTGTAT+AGG + tig0041768:4951-4970 Msa1461860:intron 10.0%
!! AGAAAATAATAAATAGTTTA+CGG + tig0041768:5047-5066 Msa1461860:intron 10.0%
!! TAAAAATTAGTTAATGTGTT+TGG - tig0041768:3820-3839 None:intergenic 15.0%
!! TATCAAATTTGCAAAAAATT+TGG + tig0041768:3989-4008 Msa1461860:intron 15.0%
!!! AAAAATTTGGACTATTTTAA+CGG + tig0041768:4002-4021 Msa1461860:intron 15.0%
!! TTTCCATTATTTAAAGATTA+AGG + tig0041768:4245-4264 Msa1461860:intron 15.0%
!! AAATAACATTAATGTTTCAT+TGG - tig0041768:5199-5218 None:intergenic 15.0%
!! TAAATAGTTAATGGTATAAA+AGG - tig0041768:5224-5243 None:intergenic 15.0%
!! AAAGAGTAATAAATAGTTAA+TGG - tig0041768:5233-5252 None:intergenic 15.0%
!! AAATGTAATCAATTATGTAT+TGG - tig0041768:5331-5350 None:intergenic 15.0%
!! ATGTTATAATAGTTATAACA+AGG - tig0041768:5568-5587 None:intergenic 15.0%
!!! GAGATTTCTTTTAATGTTTA+TGG + tig0041768:3085-3104 Msa1461860:CDS 20.0%
!! AAATCAACTATACATTCTAT+TGG - tig0041768:3279-3298 None:intergenic 20.0%
!!! AACATAAATTTCTAGTAATG+TGG - tig0041768:3501-3520 None:intergenic 20.0%
!! GAAATGCATAAATTTAACAA+TGG - tig0041768:3764-3783 None:intergenic 20.0%
!! ACCAATATAATACATATTCT+GGG + tig0041768:4177-4196 Msa1461860:intron 20.0%
!! CAACCTTAATCTTTAAATAA+TGG - tig0041768:4251-4270 None:intergenic 20.0%
!! AGCTATATTTAATATCAAAG+AGG - tig0041768:4473-4492 None:intergenic 20.0%
!! ATATAGCTTATACATAAACA+TGG + tig0041768:4485-4504 Msa1461860:intron 20.0%
!! ACCAAAATGACTAATAATTT+GGG - tig0041768:4913-4932 None:intergenic 20.0%
!! ACAAAATTATCCTTCATTAA+CGG + tig0041768:4994-5013 Msa1461860:intron 20.0%
!! TGTAAAACGACATATAATTT+GGG - tig0041768:5173-5192 None:intergenic 20.0%
!! TTGTAAAACGACATATAATT+TGG - tig0041768:5174-5193 None:intergenic 20.0%
!! ATTTCTTAATCTGTGTAAAA+TGG + tig0041768:5347-5366 Msa1461860:intron 20.0%
!!! GTTGACATATTGATTTTTTT+GGG - tig0041768:5495-5514 None:intergenic 20.0%
!!! AGTTGACATATTGATTTTTT+TGG - tig0041768:5496-5515 None:intergenic 20.0%
!!! GTTGACATATTGATTTTTTT+TGG - tig0041768:5495-5514 None:intergenic 20.0%
!! ATGCTAAAAGTTACTATTAT+AGG - tig0041768:5704-5723 None:intergenic 20.0%
!!! AAAATTTGAGCTTTTATCAA+CGG - tig0041768:6230-6249 None:intergenic 20.0%
!! TATATATTTCTCTTATCTGT+AGG + tig0041768:6370-6389 Msa1461860:three_prime_UTR 20.0%
!! TGAAAGAAAATAATAATGCT+AGG + tig0041768:6709-6728 Msa1461860:three_prime_UTR 20.0%
!! GAAAGAAAATAATAATGCTA+GGG + tig0041768:6710-6729 Msa1461860:three_prime_UTR 20.0%
!! AAAGAAAATAATAATGCTAG+GGG + tig0041768:6711-6730 Msa1461860:three_prime_UTR 20.0%
!! AAGTTTAGACATTAGAATTA+TGG - tig0041768:7085-7104 None:intergenic 20.0%
!! AGAATAATTCTGGTGTTAAT+TGG - tig0041768:2510-2529 None:intergenic 25.0%
! AACACATTAATATACCCTTT+CGG - tig0041768:2929-2948 None:intergenic 25.0%
! TGAAACAGTATTTGATTGAA+CGG + tig0041768:2960-2979 Msa1461860:CDS 25.0%
! CAAATATAAGGCTTATCTTT+CGG - tig0041768:3142-3161 None:intergenic 25.0%
!! TAAGCCTTATATTTGTAACA+TGG + tig0041768:3147-3166 Msa1461860:CDS 25.0%
! AAAACATTACACATGCTTTA+AGG + tig0041768:3196-3215 Msa1461860:intron 25.0%
!!! TGCATTTGTTGGATTAATTT+TGG + tig0041768:3226-3245 Msa1461860:intron 25.0%
!!! AGTTGATTTGAAGAATCAAT+AGG + tig0041768:3290-3309 Msa1461860:intron 25.0%
!!! GTTGATTTGAAGAATCAATA+GGG + tig0041768:3291-3310 Msa1461860:intron 25.0%
! TTAATGAGTTAGATCGAAAT+AGG + tig0041768:3666-3685 Msa1461860:intron 25.0%
! TAATGAGTTAGATCGAAATA+GGG + tig0041768:3667-3686 Msa1461860:intron 25.0%
! TGACATAGTAAATGAATATG+TGG - tig0041768:3898-3917 None:intergenic 25.0%
! TTATCAGAGAAATAAGTTCA+GGG - tig0041768:4122-4141 None:intergenic 25.0%
! TTTATCAGAGAAATAAGTTC+AGG - tig0041768:4123-4142 None:intergenic 25.0%
! GACCAATATAATACATATTC+TGG + tig0041768:4176-4195 Msa1461860:intron 25.0%
! TCCCAGAATATGTATTATAT+TGG - tig0041768:4181-4200 None:intergenic 25.0%
! GAGCTTATGTAAATAGTTTA+TGG + tig0041768:4352-4371 Msa1461860:intron 25.0%
!! AGCTTAAAACAAGTTGAAAT+TGG - tig0041768:4390-4409 None:intergenic 25.0%
!!! TAATTTTTTACTCTTCTGCT+AGG + tig0041768:4623-4642 Msa1461860:intron 25.0%
!!! AGGTTAAGTAGGATATTTTT+TGG + tig0041768:4643-4662 Msa1461860:intron 25.0%
!!! GGTTAAGTAGGATATTTTTT+GGG + tig0041768:4644-4663 Msa1461860:intron 25.0%
!!! GAAAGTATTTAACACTAACA+AGG - tig0041768:4686-4705 None:intergenic 25.0%
! AGCTTAATTATTTATACTGC+AGG - tig0041768:4829-4848 None:intergenic 25.0%
!! TACAATTTGGAATTCATTGA+TGG - tig0041768:4862-4881 None:intergenic 25.0%
!! GAGAGTACATTATTACAATT+TGG - tig0041768:4875-4894 None:intergenic 25.0%
!! TCCCAAATTATTAGTCATTT+TGG + tig0041768:4909-4928 Msa1461860:intron 25.0%
! GACCAAAATGACTAATAATT+TGG - tig0041768:4914-4933 None:intergenic 25.0%
! TAAATAGTTTACGGTATAGT+AGG + tig0041768:5056-5075 Msa1461860:intron 25.0%
! ACAAAATTATCCTTCGTTAA+TGG - tig0041768:5284-5303 None:intergenic 25.0%
! GTCAAAACGACTTATAATTT+GGG + tig0041768:5369-5388 Msa1461860:intron 25.0%
!!! TTTTTTTTTACCTTTTCCTG+TGG + tig0041768:5642-5661 Msa1461860:intron 25.0%
!! GCTTTTGTATACATGTTAAA+TGG - tig0041768:6002-6021 None:intergenic 25.0%
!! ACAGAAACATTTTACGTATA+AGG - tig0041768:6271-6290 None:intergenic 25.0%
!! TTATACGTAAAATGTTTCTG+TGG + tig0041768:6270-6289 Msa1461860:intron 25.0%
!!! TTTATGTTTTGTTTCAGCAA+TGG + tig0041768:6294-6313 Msa1461860:intron 25.0%
! GTACTTCATTATAAATTACC+AGG + tig0041768:6495-6514 Msa1461860:intron 25.0%
! TTACGAATATTAAAGATGCA+TGG + tig0041768:6545-6564 Msa1461860:three_prime_UTR 25.0%
!! AATACACATAAAATTTGCTC+TGG + tig0041768:6570-6589 Msa1461860:three_prime_UTR 25.0%
!!! ATCAACCTTTAATTTGAAAG+TGG + tig0041768:6648-6667 Msa1461860:three_prime_UTR 25.0%
!! ATTATTATTTTCTTTCAGCC+AGG - tig0041768:6706-6725 None:intergenic 25.0%
! AAGAAAATAATAATGCTAGG+GGG + tig0041768:6712-6731 Msa1461860:three_prime_UTR 25.0%
! ATAAGGTTGAAGAATAGAAA+AGG + tig0041768:6825-6844 Msa1461860:three_prime_UTR 25.0%
!! TCTTTTAGATTTGTCCATAA+TGG + tig0041768:6854-6873 Msa1461860:three_prime_UTR 25.0%
!!! ATTGGTTTGGTGTATATATA+TGG + tig0041768:6956-6975 Msa1461860:three_prime_UTR 25.0%
! AAAAAAGAGTGAACTCTATT+TGG - tig0041768:6989-7008 None:intergenic 25.0%
! GAATTATGGACAAATCTATT+TGG - tig0041768:7071-7090 None:intergenic 25.0%
ACACATTAATATACCCTTTC+GGG - tig0041768:2928-2947 None:intergenic 30.0%
! ATTGCGTTTTATAGAGGAAA+TGG + tig0041768:3013-3032 Msa1461860:CDS 30.0%
! TATAGAGGAAATGGTGTTAA+TGG + tig0041768:3022-3041 Msa1461860:CDS 30.0%
ACAGCCATGTTACAAATATA+AGG - tig0041768:3154-3173 None:intergenic 30.0%
TTATATTTGTAACATGGCTG+TGG + tig0041768:3153-3172 Msa1461860:CDS 30.0%
TGAAGAATCAATAGGGAAAT+TGG + tig0041768:3298-3317 Msa1461860:intron 30.0%
!! ATTGGTGTTTGACTTGATAT+TGG + tig0041768:3316-3335 Msa1461860:intron 30.0%
!! TTGGTGTTTGACTTGATATT+GGG + tig0041768:3317-3336 Msa1461860:intron 30.0%
ATTGGGAGGACTAATTAAAA+TGG + tig0041768:3334-3353 Msa1461860:intron 30.0%
CATTTAACATGCAATGTCAT+AGG - tig0041768:3454-3473 None:intergenic 30.0%
! GACATGTGAATTTTGTAGTA+AGG + tig0041768:3570-3589 Msa1461860:intron 30.0%
AAGGAAAGTAAGTCAAATAG+AGG + tig0041768:3589-3608 Msa1461860:intron 30.0%
AAGTAAGTCAAATAGAGGAT+AGG + tig0041768:3594-3613 Msa1461860:intron 30.0%
ATGCATTTCATGTCAACATT+AGG + tig0041768:3775-3794 Msa1461860:intron 30.0%
TGCATTTCATGTCAACATTA+GGG + tig0041768:3776-3795 Msa1461860:intron 30.0%
TAACTGTAGAAGTTATGAGA+GGG + tig0041768:3927-3946 Msa1461860:intron 30.0%
CATTCAAACTAGAGTGAATA+AGG - tig0041768:4054-4073 None:intergenic 30.0%
AGATACTTGAGCTTATCTAT+TGG + tig0041768:4299-4318 Msa1461860:intron 30.0%
ATAGTTTATGGCATGTCTAT+AGG + tig0041768:4364-4383 Msa1461860:intron 30.0%
TTAATATCAAAGAGGAAACG+TGG - tig0041768:4465-4484 None:intergenic 30.0%
TAAGCTAGAACTATTAGAAG+TGG + tig0041768:4568-4587 Msa1461860:intron 30.0%
AAGCTAGAACTATTAGAAGT+GGG + tig0041768:4569-4588 Msa1461860:intron 30.0%
! TAAAAGTTCAAGTTCAAGCA+AGG - tig0041768:4719-4738 None:intergenic 30.0%
! CTTTTCAATACCATTAACGA+AGG + tig0041768:5271-5290 Msa1461860:intron 30.0%
GGTCAAAACGACTTATAATT+TGG + tig0041768:5368-5387 Msa1461860:intron 30.0%
AAACGACTTATAATTTGGGA+CGG + tig0041768:5373-5392 Msa1461860:intron 30.0%
TCTCAAAGCGACTTATAATT+TGG + tig0041768:5424-5443 Msa1461860:intron 30.0%
CTCAAAGCGACTTATAATTT+GGG + tig0041768:5425-5444 Msa1461860:intron 30.0%
! GTTTTACACCTGAATGTAAT+TGG + tig0041768:5842-5861 Msa1461860:intron 30.0%
GTTAGAATCCAATTACATTC+AGG - tig0041768:5853-5872 None:intergenic 30.0%
TACTCATAGTCATTAGAACA+TGG - tig0041768:6140-6159 None:intergenic 30.0%
AGACAACATTTATGTGTTCA+AGG + tig0041768:6162-6181 Msa1461860:three_prime_UTR 30.0%
TTATCAACGGTAAGAGATAA+TGG - tig0041768:6217-6236 None:intergenic 30.0%
! ATTTTACGTATAAGGTAGTG+GGG - tig0041768:6263-6282 None:intergenic 30.0%
! CATTTTACGTATAAGGTAGT+GGG - tig0041768:6264-6283 None:intergenic 30.0%
! ACATTTTACGTATAAGGTAG+TGG - tig0041768:6265-6284 None:intergenic 30.0%
!!! GTTTTAAGTTTACTGGAGAA+TGG + tig0041768:6327-6346 Msa1461860:three_prime_UTR 30.0%
! CTTTTCATCATTTAGCTATC+AGG - tig0041768:6463-6482 None:intergenic 30.0%
TAATTTCTGTATGTGCATCA+AGG + tig0041768:6617-6636 Msa1461860:three_prime_UTR 30.0%
! TTTGATGATCTTACAAGATG+AGG - tig0041768:6888-6907 None:intergenic 30.0%
! ATACTTGTGCTGATGTTAAT+TGG + tig0041768:6938-6957 Msa1461860:three_prime_UTR 30.0%
TGAGAAGAAGAGAAGTAACA+TGG - tig0041768:2466-2485 None:intergenic 35.0%
! ATTCTGGTGTTAATTGGTGA+CGG - tig0041768:2504-2523 None:intergenic 35.0%
GGGAATGAAGAGAATAATTC+TGG - tig0041768:2520-2539 None:intergenic 35.0%
TCTTCATTCCCACAACATAA+TGG + tig0041768:2529-2548 Msa1461860:exon 35.0%
! ATGATTTTGTGGGTCTAATG+AGG - tig0041768:2579-2598 None:intergenic 35.0%
! TGAAGCGGTTATGATTTTGT+GGG - tig0041768:2589-2608 None:intergenic 35.0%
! TTGAAGCGGTTATGATTTTG+TGG - tig0041768:2590-2609 None:intergenic 35.0%
TTTGAGGAAGGAATCTGTTA+GGG - tig0041768:2735-2754 None:intergenic 35.0%
AACAGTATTTGATTGAACGG+AGG + tig0041768:2963-2982 Msa1461860:CDS 35.0%
!! ACGTTGATTGCGTTTTATAG+AGG + tig0041768:3007-3026 Msa1461860:CDS 35.0%
ATATAAGGCTTATCTTTCGG+CGG - tig0041768:3139-3158 None:intergenic 35.0%
CTGTGGATAAATCTCTTAGA+AGG + tig0041768:3170-3189 Msa1461860:CDS 35.0%
!! AAGGCTTGATTTGCATTTGT+TGG + tig0041768:3215-3234 Msa1461860:intron 35.0%
TGAACATGTGATCTTACATG+TGG + tig0041768:3472-3491 Msa1461860:intron 35.0%
GCACGTTAAATTCATGCATT+TGG + tig0041768:3521-3540 Msa1461860:intron 35.0%
ATTAGGGCTATTATCACTTC+AGG + tig0041768:3792-3811 Msa1461860:intron 35.0%
CATGTTCAATTTAATCCCCA+TGG + tig0041768:3852-3871 Msa1461860:intron 35.0%
CTAACTGTAGAAGTTATGAG+AGG + tig0041768:3926-3945 Msa1461860:intron 35.0%
TCGTAACGAGTTAGTCAAAA+TGG - tig0041768:3954-3973 None:intergenic 35.0%
ATTGGTCAAATTTGTCCTCA+TGG - tig0041768:4163-4182 None:intergenic 35.0%
!! TATTCTGGGACTAATTTGTG+TGG + tig0041768:4191-4210 Msa1461860:intron 35.0%
TGTGGCTAAATGCATATTCA+GGG + tig0041768:4209-4228 Msa1461860:intron 35.0%
!!! CAACTTGTTTTAAGCTCTCA+AGG + tig0041768:4394-4413 Msa1461860:intron 35.0%
TTACACATCTATATACGCTC+CGG - tig0041768:4551-4570 None:intergenic 35.0%
ACTATTAGAAGTGGGTGAAA+AGG + tig0041768:4577-4596 Msa1461860:intron 35.0%
CTATTAGAAGTGGGTGAAAA+GGG + tig0041768:4578-4597 Msa1461860:intron 35.0%
CTTTCTCATACCGTTAATGA+AGG - tig0041768:5007-5026 None:intergenic 35.0%
AAGCGACTTATAATTTGGGA+CGG - tig0041768:5429-5448 None:intergenic 35.0%
TCCCAAATTATAAGTCGCTT+CGG + tig0041768:5134-5153 Msa1461860:intron 35.0%
AAGCGACTTATAATTTGGGA+TGG + tig0041768:5429-5448 Msa1461860:intron 35.0%
! GACTTATAATTTGGGATGGA+GGG + tig0041768:5433-5452 Msa1461860:intron 35.0%
AGCATCCAAGATTAAGATTG+AGG + tig0041768:5719-5738 Msa1461860:intron 35.0%
GGTTACCTCAATCTTAATCT+TGG - tig0041768:5727-5746 None:intergenic 35.0%
TCAGGAGGAGAATATATCTT+TGG - tig0041768:5748-5767 None:intergenic 35.0%
TTCTCCTCCTGAAATTCTAA+TGG + tig0041768:5756-5775 Msa1461860:intron 35.0%
ATGCAAGCCATTAGAATTTC+AGG - tig0041768:5766-5785 None:intergenic 35.0%
TTGTTTCAGCAATGGTATCA+AGG + tig0041768:6302-6321 Msa1461860:intron 35.0%
!!! CAAGGTCGTTTTAAGTTTAC+TGG + tig0041768:6320-6339 Msa1461860:three_prime_UTR 35.0%
TCATTTACCTGTAACACAAC+AGG - tig0041768:6403-6422 None:intergenic 35.0%
GAAAGAATGATGTCATAACC+TGG - tig0041768:6516-6535 None:intergenic 35.0%
!! ACCTTTAATTTGAAAGTGGC+AGG + tig0041768:6652-6671 Msa1461860:three_prime_UTR 35.0%
! TATTTTCTTTCAGCCAGGAT+TGG - tig0041768:6701-6720 None:intergenic 35.0%
ATGAGGAACTAAGTCCATTA+TGG - tig0041768:6871-6890 None:intergenic 35.0%
! TGTGCTGATGTTAATTGGTT+TGG + tig0041768:6943-6962 Msa1461860:three_prime_UTR 35.0%
! ATCTATTTGGAGCTTTCCAT+CGG - tig0041768:7058-7077 None:intergenic 35.0%
TTGGAACTAGTGTTCTGGTA+AGG - tig0041768:2428-2447 None:intergenic 40.0%
ACCAGAACACTAGTTCCAAT+TGG + tig0041768:2429-2448 Msa1461860:five_prime_UTR 40.0%
ACCAATTGGAACTAGTGTTC+TGG - tig0041768:2433-2452 None:intergenic 40.0%
ATGGCATCATGTTCACCAAT+TGG - tig0041768:2447-2466 None:intergenic 40.0%
! GAAATTTCTGCGAGTGGTTT+TGG - tig0041768:2630-2649 None:intergenic 40.0%
GAAAGAGAAATTTCTGCGAG+TGG - tig0041768:2636-2655 None:intergenic 40.0%
! ATCTGTTAGGGTTTGGGATT+GGG - tig0041768:2723-2742 None:intergenic 40.0%
! AATCTGTTAGGGTTTGGGAT+TGG - tig0041768:2724-2743 None:intergenic 40.0%
GAAGGAATCTGTTAGGGTTT+GGG - tig0041768:2729-2748 None:intergenic 40.0%
GTTTGAGGAAGGAATCTGTT+AGG - tig0041768:2736-2755 None:intergenic 40.0%
! GAATTTACCTGGTTTGAGGA+AGG - tig0041768:2747-2766 None:intergenic 40.0%
! TGAGGAATTTACCTGGTTTG+AGG - tig0041768:2751-2770 None:intergenic 40.0%
GTGTTTGTGAGGAATTTACC+TGG - tig0041768:2758-2777 None:intergenic 40.0%
AATCGATGATGTTCCCGAAA+GGG + tig0041768:2912-2931 Msa1461860:CDS 40.0%
! GGAAATGGTGTTAATGGTGA+TGG + tig0041768:3028-3047 Msa1461860:CDS 40.0%
!! TAATGGTGATGGTGAAGAAG+AGG + tig0041768:3039-3058 Msa1461860:CDS 40.0%
TGAAGAAGAGGAAATGCAGT+TGG + tig0041768:3051-3070 Msa1461860:CDS 40.0%
!! GTGTTTGACTTGATATTGGG+AGG + tig0041768:3320-3339 Msa1461860:intron 40.0%
CAATTTAATCCCCATGGTGT+AGG + tig0041768:3858-3877 Msa1461860:intron 40.0%
!! TAGAAGTGTCAAGAACCATG+AGG + tig0041768:4145-4164 Msa1461860:intron 40.0%
GTGTGGCTAAATGCATATTC+AGG + tig0041768:4208-4227 Msa1461860:intron 40.0%
GTGGCTAAATGCATATTCAG+GGG + tig0041768:4210-4229 Msa1461860:intron 40.0%
TCACAAACCAATTCACGTGT+AGG - tig0041768:4276-4295 None:intergenic 40.0%
GTTGTTTATTCAAACCCTCC+CGG + tig0041768:4529-4548 Msa1461860:intron 40.0%
TACACATCTATATACGCTCC+GGG - tig0041768:4550-4569 None:intergenic 40.0%
ACTCTTCTGCTAGGTTAAGT+AGG + tig0041768:4632-4651 Msa1461860:intron 40.0%
! ACTTTTAGCACAGACAGAGT+AGG + tig0041768:4732-4751 Msa1461860:intron 40.0%
! CTTTTAGCACAGACAGAGTA+GGG + tig0041768:4733-4752 Msa1461860:intron 40.0%
! GACTTATAATTTGGGACGGA+GGG - tig0041768:5377-5396 None:intergenic 40.0%
CCCGAAGCGACTTATAATTT+GGG - tig0041768:5138-5157 None:intergenic 40.0%
CCCAAATTATAAGTCGCTTC+GGG + tig0041768:5135-5154 Msa1461860:intron 40.0%
TCCCGAAGCGACTTATAATT+TGG - tig0041768:5139-5158 None:intergenic 40.0%
! GACTTATAATTTGGGACGGA+GGG + tig0041768:5377-5396 Msa1461860:intron 40.0%
! CGACTTATAATTTGGGATGG+AGG + tig0041768:5432-5451 Msa1461860:intron 40.0%
AGAAAGTAGACCACAGGAAA+AGG - tig0041768:5655-5674 None:intergenic 40.0%
ACTCAAAGAAAGTAGACCAC+AGG - tig0041768:5661-5680 None:intergenic 40.0%
CTTTGAGTCAATGCATGCTA+TGG + tig0041768:5673-5692 Msa1461860:intron 40.0%
CAAGCCATTAGAATTTCAGG+AGG - tig0041768:5763-5782 None:intergenic 40.0%
CATTGGATGGCATCTTCTAA+AGG + tig0041768:5902-5921 Msa1461860:CDS 40.0%
ATTTCTCGGATGAGTTCATC+AGG + tig0041768:5939-5958 Msa1461860:CDS 40.0%
! TCTGAAGGCATACTTAAGAG+AGG - tig0041768:6107-6126 None:intergenic 40.0%
GTTTACTGGAGAATGGAGAT+TGG + tig0041768:6334-6353 Msa1461860:three_prime_UTR 40.0%
AAAGAGACCTGTTGTGTTAC+AGG + tig0041768:6393-6412 Msa1461860:three_prime_UTR 40.0%
!! GCCTGCCACTTTCAAATTAA+AGG - tig0041768:6656-6675 None:intergenic 40.0%
CTATTGAACCATACCAATCC+TGG + tig0041768:6685-6704 Msa1461860:three_prime_UTR 40.0%
TTCAACCTTATCATCACCCT+TGG - tig0041768:6816-6835 None:intergenic 40.0%
AGCTGTGGCCATTATGTTGT+GGG - tig0041768:2540-2559 None:intergenic 45.0%
GAAAGAGAGTGAAAGAGCTG+TGG - tig0041768:2555-2574 None:intergenic 45.0%
!! TTTTGGTTGTGGTGGTGATG+AGG - tig0041768:2613-2632 None:intergenic 45.0%
!! TTTGAAGGGGGGTTTGTTGA+GGG - tig0041768:2672-2691 None:intergenic 45.0%
AGGAGGAGTAGAGTTTGAAG+GGG - tig0041768:2685-2704 None:intergenic 45.0%
GAGGAGGAGTAGAGTTTGAA+GGG - tig0041768:2686-2705 None:intergenic 45.0%
GGAAGGAATCTGTTAGGGTT+TGG - tig0041768:2730-2749 None:intergenic 45.0%
ACAGATTCCTTCCTCAAACC+AGG + tig0041768:2737-2756 Msa1461860:CDS 45.0%
! ATTTGAGGGTGTGTGTGTAG+AGG - tig0041768:2814-2833 None:intergenic 45.0%
TACACACACACCCTCAAATC+CGG + tig0041768:2815-2834 Msa1461860:CDS 45.0%
ACGCATTACTCGAACCCAAA+CGG - tig0041768:2843-2862 None:intergenic 45.0%
CGCTATTGTATGCTTGCTTG+CGG + tig0041768:2877-2896 Msa1461860:CDS 45.0%
GAATCGATGATGTTCCCGAA+AGG + tig0041768:2911-2930 Msa1461860:CDS 45.0%
GCAATCAACGTTGCCATATG+CGG - tig0041768:2998-3017 None:intergenic 45.0%
TAATTCTACTCTTCCGTCGC+CGG + tig0041768:3111-3130 Msa1461860:CDS 45.0%
GTCAAATAGAGGATAGGCAG+AGG + tig0041768:3600-3619 Msa1461860:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - tig0041768:3736-3755 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - tig0041768:3737-3756 None:intergenic 45.0%
! TCAAGCCTTATCCCACTAAG+TGG - tig0041768:3738-3757 None:intergenic 45.0%
CACGTAAATCCTACACCATG+GGG - tig0041768:3870-3889 None:intergenic 45.0%
CCACGTAAATCCTACACCAT+GGG - tig0041768:3871-3890 None:intergenic 45.0%
TCCACGTAAATCCTACACCA+TGG - tig0041768:3872-3891 None:intergenic 45.0%
! CGACTTATAATTTGGGACGG+AGG - tig0041768:5376-5395 None:intergenic 45.0%
! CGACTTATAATTTGGGACGG+AGG + tig0041768:5376-5395 Msa1461860:intron 45.0%
! GGACGGAGGGAGTATAATTT+GGG + tig0041768:5390-5409 Msa1461860:intron 45.0%
!! TTCTAAGAGTGTCTCCCTTC+AGG + tig0041768:5874-5893 Msa1461860:intron 45.0%
! CAAGCGAGGAACTGATTTCT+CGG + tig0041768:5925-5944 Msa1461860:CDS 45.0%
!! CATGGCACGTTTGTTTCTGA+AGG - tig0041768:6122-6141 None:intergenic 45.0%
!! GGAGAATGGAGATTGGTTTC+AGG + tig0041768:6341-6360 Msa1461860:three_prime_UTR 45.0%
TTTGAAAGTGGCAGGCACAT+TGG + tig0041768:6660-6679 Msa1461860:three_prime_UTR 45.0%
! TCTTTCAGCCAGGATTGGTA+TGG - tig0041768:6696-6715 None:intergenic 45.0%
GCTGTCAGTCTCTTTCTCTT+AGG + tig0041768:6754-6773 Msa1461860:three_prime_UTR 45.0%
TCTCTTAGGTACCTTTCACG+TGG + tig0041768:6768-6787 Msa1461860:three_prime_UTR 45.0%
GTCTACTTCTACCACACCTT+CGG - tig0041768:6794-6813 None:intergenic 45.0%
GTGTGGTAGAAGTAGACCAA+GGG + tig0041768:6797-6816 Msa1461860:three_prime_UTR 45.0%
GTAGACCAAGGGTGATGATA+AGG + tig0041768:6808-6827 Msa1461860:three_prime_UTR 45.0%
!! AATTGGTGACGGTGGTGGTT+TGG - tig0041768:2493-2512 None:intergenic 50.0%
!! GTGTTAATTGGTGACGGTGG+TGG - tig0041768:2498-2517 None:intergenic 50.0%
!! CTGGTGTTAATTGGTGACGG+TGG - tig0041768:2501-2520 None:intergenic 50.0%
GAGCTGTGGCCATTATGTTG+TGG - tig0041768:2541-2560 None:intergenic 50.0%
! TGGTGGTGATGAGGTTGAAG+CGG - tig0041768:2604-2623 None:intergenic 50.0%
!!! TCTGCGAGTGGTTTTGGTTG+TGG - tig0041768:2624-2643 None:intergenic 50.0%
!! TTGAAGGGGGGTTTGTTGAG+GGG - tig0041768:2671-2690 None:intergenic 50.0%
!! GTTTGAAGGGGGGTTTGTTG+AGG - tig0041768:2673-2692 None:intergenic 50.0%
GAGGAGTAGAGTTTGAAGGG+GGG - tig0041768:2683-2702 None:intergenic 50.0%
GGAGGAGTAGAGTTTGAAGG+GGG - tig0041768:2684-2703 None:intergenic 50.0%
GGAGGAGGAGTAGAGTTTGA+AGG - tig0041768:2687-2706 None:intergenic 50.0%
! TGTTAGGGTTTGGGATTGGG+AGG - tig0041768:2720-2739 None:intergenic 50.0%
!! TGGTGAGTTCGGTGTTTGTG+AGG - tig0041768:2769-2788 None:intergenic 50.0%
GAGGAGTTTGATGCCGCATA+TGG + tig0041768:2982-3001 Msa1461860:CDS 50.0%
GAAGAGGAAATGCAGTTGGC+TGG + tig0041768:3055-3074 Msa1461860:CDS 50.0%
CTTATCCCACTAAGTGGGGT+CGG - tig0041768:3732-3751 None:intergenic 50.0%
CCCATGGTGTAGGATTTACG+TGG + tig0041768:3868-3887 Msa1461860:intron 50.0%
GCTCTCAACACACTCACAAG+TGG - tig0041768:4336-4355 None:intergenic 50.0%
CATCTATATACGCTCCGGGA+GGG - tig0041768:4546-4565 None:intergenic 50.0%
ACATCTATATACGCTCCGGG+AGG - tig0041768:4547-4566 None:intergenic 50.0%
! GGGACGGAGGGAGTATAATT+TGG + tig0041768:5389-5408 Msa1461860:intron 50.0%
!! TAAGAGTGTCTCCCTTCAGG+AGG + tig0041768:5877-5896 Msa1461860:intron 50.0%
!! AAGAGTGTCTCCCTTCAGGA+GGG + tig0041768:5878-5897 Msa1461860:intron 50.0%
! GCATCTTCTAAAGGCAAGCG+AGG + tig0041768:5911-5930 Msa1461860:CDS 50.0%
GGTGTGGTAGAAGTAGACCA+AGG + tig0041768:6796-6815 Msa1461860:three_prime_UTR 50.0%
!! ACAAGAGCACCATTGACCGA+TGG + tig0041768:7039-7058 Msa1461860:three_prime_UTR 50.0%
TGGAGCTTTCCATCGGTCAA+TGG - tig0041768:7051-7070 None:intergenic 50.0%
!!! GCGAGTGGTTTTGGTTGTGG+TGG - tig0041768:2621-2640 None:intergenic 55.0%
!! GGTTTGTTGAGGGGAAGTGG+GGG - tig0041768:2662-2681 None:intergenic 55.0%
!! GGGTTTGTTGAGGGGAAGTG+GGG - tig0041768:2663-2682 None:intergenic 55.0%
!! GGGGTTTGTTGAGGGGAAGT+GGG - tig0041768:2664-2683 None:intergenic 55.0%
TTGGGATTGGGAGGAAGAGG+AGG - tig0041768:2711-2730 None:intergenic 55.0%
! GGTTTGGGATTGGGAGGAAG+AGG - tig0041768:2714-2733 None:intergenic 55.0%
TGTAGAGGTAGGTGGAGAGG+TGG - tig0041768:2799-2818 None:intergenic 55.0%
GTGTGTAGAGGTAGGTGGAG+AGG - tig0041768:2802-2821 None:intergenic 55.0%
GGTGTGTGTGTAGAGGTAGG+TGG - tig0041768:2807-2826 None:intergenic 55.0%
! GAGGGTGTGTGTGTAGAGGT+AGG - tig0041768:2810-2829 None:intergenic 55.0%
! CCAAACGGTGCCGGATTTGA+GGG - tig0041768:2828-2847 None:intergenic 55.0%
CCTCAAATCCGGCACCGTTT+GGG + tig0041768:2826-2845 Msa1461860:CDS 55.0%
TACTCGAACCCAAACGGTGC+CGG - tig0041768:2837-2856 None:intergenic 55.0%
GGCTTATCTTTCGGCGGATC+CGG - tig0041768:3133-3152 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG + tig0041768:3723-3742 Msa1461860:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG + tig0041768:3724-3743 Msa1461860:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG + tig0041768:3730-3749 Msa1461860:intron 55.0%
GGTTGCGCCTACACGTGAAT+TGG + tig0041768:4266-4285 Msa1461860:intron 55.0%
! AGAGTGTCTCCCTTCAGGAG+GGG + tig0041768:5879-5898 Msa1461860:intron 55.0%
CATCCAATGCCCCTCCTGAA+GGG - tig0041768:5891-5910 None:intergenic 55.0%
TGCGTCTCTGCAACAACAGC+AGG - tig0041768:6061-6080 None:intergenic 55.0%
!! GGGGGTTTGTTGAGGGGAAG+TGG - tig0041768:2665-2684 None:intergenic 60.0%
TTGGGAGGAAGAGGAGGAGG+AGG - tig0041768:2705-2724 None:intergenic 60.0%
GGATTGGGAGGAAGAGGAGG+AGG - tig0041768:2708-2727 None:intergenic 60.0%
! GTGGTGGAGGGTGGTGAGTT+CGG - tig0041768:2780-2799 None:intergenic 60.0%
!! GTAGGTGGAGAGGTGGTGGA+GGG - tig0041768:2792-2811 None:intergenic 60.0%
AGAGGTAGGTGGAGAGGTGG+TGG - tig0041768:2796-2815 None:intergenic 60.0%
CCCTCAAATCCGGCACCGTT+TGG + tig0041768:2825-2844 Msa1461860:CDS 60.0%
! CCCAAACGGTGCCGGATTTG+AGG - tig0041768:2829-2848 None:intergenic 60.0%
! TCTCCCTTCAGGAGGGGCAT+TGG + tig0041768:5885-5904 Msa1461860:intron 60.0%
CCATCCAATGCCCCTCCTGA+AGG - tig0041768:5892-5911 None:intergenic 60.0%
!! CCTTCAGGAGGGGCATTGGA+TGG + tig0041768:5889-5908 Msa1461860:intron 60.0%
GGTACCTTTCACGTGGCCGA+AGG + tig0041768:6775-6794 Msa1461860:three_prime_UTR 60.0%
CACACCTTCGGCCACGTGAA+AGG - tig0041768:6782-6801 None:intergenic 60.0%
CTTTCACGTGGCCGAAGGTG+TGG + tig0041768:6780-6799 Msa1461860:three_prime_UTR 60.0%
GGAGGAAGAGGAGGAGGAGG+AGG - tig0041768:2702-2721 None:intergenic 65.0%
! GGTAGGTGGAGAGGTGGTGG+AGG - tig0041768:2793-2812 None:intergenic 65.0%
TCTTTCGGCGGATCCGGCGA+CGG - tig0041768:3127-3146 None:intergenic 65.0%
!! GGTGGAGAGGTGGTGGAGGG+TGG - tig0041768:2789-2808 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0041768 gene 2420 7130 2420 ID=Msa1461860;Name=Msa1461860
tig0041768 mRNA 2420 7130 2420 ID=Msa1461860-mRNA-1;Parent=Msa1461860;Name=Msa1461860-mRNA-1;_AED=0.25;_eAED=0.25;_QI=128|1|1|1|0.33|0.5|4|762|302
tig0041768 exon 2420 3191 2420 ID=Msa1461860-mRNA-1:exon:23384;Parent=Msa1461860-mRNA-1
tig0041768 exon 5896 6204 5896 ID=Msa1461860-mRNA-1:exon:23385;Parent=Msa1461860-mRNA-1
tig0041768 exon 6311 6414 6311 ID=Msa1461860-mRNA-1:exon:23386;Parent=Msa1461860-mRNA-1
tig0041768 exon 6517 7130 6517 ID=Msa1461860-mRNA-1:exon:23387;Parent=Msa1461860-mRNA-1
tig0041768 five_prime_UTR 2420 2547 2420 ID=Msa1461860-mRNA-1:five_prime_utr;Parent=Msa1461860-mRNA-1
tig0041768 CDS 2548 3191 2548 ID=Msa1461860-mRNA-1:cds;Parent=Msa1461860-mRNA-1
tig0041768 CDS 5896 6160 5896 ID=Msa1461860-mRNA-1:cds;Parent=Msa1461860-mRNA-1
tig0041768 three_prime_UTR 6161 6204 6161 ID=Msa1461860-mRNA-1:three_prime_utr;Parent=Msa1461860-mRNA-1
tig0041768 three_prime_UTR 6311 6414 6311 ID=Msa1461860-mRNA-1:three_prime_utr;Parent=Msa1461860-mRNA-1
tig0041768 three_prime_UTR 6517 7130 6517 ID=Msa1461860-mRNA-1:three_prime_utr;Parent=Msa1461860-mRNA-1
Gene Sequence

>Msa1461860

ATGGCCACAGCTCTTTCACTCTCTTTCTCCTCATTAGACCCACAAAATCATAACCGCTTCAACCTCATCACCACCACAACCAAAACCACTCGCAGAAATTTCTCTTTCACACCCCCACTTCCCCTCAACAAACCCCCCTTCAAACTCTACTCCTCCTCCTCCTCCTCTTCCTCCCAATCCCAAACCCTAACAGATTCCTTCCTCAAACCAGGTAAATTCCTCACAAACACCGAACTCACCACCCTCCACCACCTCTCCACCTACCTCTACACACACACCCTCAAATCCGGCACCGTTTGGGTTCGAGTAATGCGTGACAGCGAAGTTGACGCTATTGTATGCTTGCTTGCGGATTCTTTCGCTGAATCGATGATGTTCCCGAAAGGGTATATTAATGTGTTGAGATTTCTTGTGAAACAGTATTTGATTGAACGGAGGAGTTTGATGCCGCATATGGCAACGTTGATTGCGTTTTATAGAGGAAATGGTGTTAATGGTGATGGTGAAGAAGAGGAAATGCAGTTGGCTGGTACTGTTGAGATTTCTTTTAATGTTTATGGTGCTAATTCTACTCTTCCGTCGCCGGATCCGCCGAAAGATAAGCCTTATATTTGTAACATGGCTGTGGATAAATCTCTTAGAAGGAGGGGCATTGGATGGCATCTTCTAAAGGCAAGCGAGGAACTGATTTCTCGGATGAGTTCATCAGGAGAAGTTTACTTGCATTGCAGAATGATTGATGAAGCTCCATTTAACATGTATACAAAAGCTGATTACAAAATTGTAACGACAGATAGTATTTTAGTCCTGCTGTTGTTGCAGAGACGCAAACACTTGATGTGCAAGAAACTTCCTCTCTTAAGTATGCCTTCAGAAACAAACGTGCCATGTTCTAATGACTATGAGTAA

Protein sequence

>Msa1461860

MATALSLSFSSLDPQNHNRFNLITTTTKTTRRNFSFTPPLPLNKPPFKLYSSSSSSSSQSQTLTDSFLKPGKFLTNTELTTLHHLSTYLYTHTLKSGTVWVRVMRDSEVDAIVCLLADSFAESMMFPKGYINVLRFLVKQYLIERRSLMPHMATLIAFYRGNGVNGDGEEEEMQLAGTVEISFNVYGANSTLPSPDPPKDKPYICNMAVDKSLRRRGIGWHLLKASEELISRMSSSGEVYLHCRMIDEAPFNMYTKADYKIVTTDSILVLLLLQRRKHLMCKKLPLLSMPSETNVPCSNDYE*