AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1257850


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1257850 MtrunA17_Chr4g0056591 73.984 246 63 1 2 246 456 701 2.56e-125 374
Msa1257850 MtrunA17_Chr4g0056581 95.238 126 6 0 1 126 1 126 2.96e-81 241
Msa1257850 MtrunA17_Chr7g0231931 37.398 246 150 3 3 245 427 671 4.37e-50 175
Msa1257850 MtrunA17_Chr2g0286711 38.767 227 135 3 3 226 421 646 2.27e-46 165
Msa1257850 MtrunA17_Chr4g0056571 75.641 78 15 1 177 250 1 78 1.55e-33 119
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1257850 AT1G62750.1 71.138 246 70 1 2 246 460 705 6.39e-120 361
Msa1257850 AT1G45332.2 40.244 246 143 3 3 245 250 494 4.82e-54 184
Msa1257850 AT2G45030.1 40.244 246 143 3 3 245 430 674 2.93e-53 184
Msa1257850 AT1G45332.1 40.244 246 143 3 3 245 430 674 4.14e-53 184
Msa1257850 AT1G56070.3 25.926 297 163 10 2 245 450 742 1.40e-12 68.2
Msa1257850 AT1G56070.2 25.926 297 163 10 2 245 450 742 1.40e-12 68.2
Msa1257850 AT1G56070.1 25.926 297 163 10 2 245 450 742 1.40e-12 68.2
Msa1257850 AT3G22980.1 35.345 116 72 3 2 114 502 617 8.40e-11 62.8
Msa1257850 AT3G22980.3 35.345 116 72 3 2 114 502 617 8.40e-11 62.8
Msa1257850 AT3G22980.2 35.345 116 72 3 2 114 502 617 8.40e-11 62.8

Find 71 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGTCTCAAAAGAGAATTTA+AGG 0.150654 8_2:-58838039 Msa1257850:intron
ACAATTTCAACTTTCATTAT+AGG 0.167691 8_2:+58837241 None:intergenic
CTCCATGTCAGCTTTAGTTT+TGG 0.200742 8_2:+58838184 None:intergenic
TGGTGTTCTAGCCGGCTTTC+CGG 0.222511 8_2:-58837395 Msa1257850:CDS
GTTAGTCCTGAAGAACATTT+AGG 0.254563 8_2:-58837220 Msa1257850:CDS
CTTCCAGAAGAATTCATTAC+TGG 0.320246 8_2:-58837451 Msa1257850:CDS
ACATCTCCTAAATGTTCTTC+AGG 0.323424 8_2:+58837214 None:intergenic
TCAATTGCAATCTTAATAAC+AGG 0.329367 8_2:+58838209 None:intergenic
TGCTTTCCCTATAGTTTACT+TGG 0.338998 8_2:+58837614 None:intergenic
ATGGATATTGTTACTCTTGT+TGG 0.342618 8_2:-58838311 Msa1257850:CDS
ACCCCAGTAATGAATTCTTC+TGG 0.342666 8_2:+58837448 None:intergenic
GCAATCTTAATAACAGGAAC+AGG 0.342806 8_2:+58838215 None:intergenic
TCGTCCGGTCCTCTTTATCT+TGG 0.357888 8_2:+58838105 None:intergenic
TCAATGCAGTTCGACAGTTT+TGG 0.373212 8_2:-58836809 Msa1257850:CDS
AAGCTTCTCTTGCTGCCAAC+TGG 0.389694 8_2:+58837305 None:intergenic
CGTCCGGTCCTCTTTATCTT+GGG 0.401352 8_2:+58838106 None:intergenic
TCAAATTTGTATCCACTACT+TGG 0.404077 8_2:+58837496 None:intergenic
AGGTTCAAGCATTAACGGTT+TGG 0.428422 8_2:+58837261 None:intergenic
GTATCCACTACTTGGGTCCA+TGG 0.429904 8_2:+58837504 None:intergenic
GTCCATGGGTTCAAAATGTA+TGG 0.430865 8_2:+58837519 None:intergenic
ATTATAGGTTCAAGCATTAA+CGG 0.444891 8_2:+58837256 None:intergenic
ATCAAGCACGAATGGACCCT+TGG 0.445699 8_2:+58838250 None:intergenic
TAAAGCTGACATGGAGAAGA+TGG 0.456923 8_2:-58838177 Msa1257850:CDS
TCTTGGGATAAGCGGAAAGA+AGG 0.462771 8_2:+58838122 None:intergenic
TCAAGCACGAATGGACCCTT+GGG 0.462799 8_2:+58838251 None:intergenic
ATGCCTCACTTCTGTGACTT+CGG 0.464378 8_2:+58837588 None:intergenic
GCTTTCCCTATAGTTTACTT+GGG 0.467404 8_2:+58837615 None:intergenic
CCGCTTATCCCAAGATAAAG+AGG 0.478110 8_2:-58838114 Msa1257850:CDS
TATCCACTACTTGGGTCCAT+GGG 0.482451 8_2:+58837505 None:intergenic
CATGTGTTCAATAAACAATC+AGG 0.482646 8_2:-58837568 Msa1257850:CDS
TCCATTCGTGCTTGATCAGA+TGG 0.492171 8_2:-58838243 Msa1257850:CDS
GAGGACCGGACGATCATTCA+AGG 0.514727 8_2:-58838095 Msa1257850:CDS
TACACCAACAACCGGAAAGC+CGG 0.518143 8_2:+58837384 None:intergenic
CCGTTCCTTGAATGATCGTC+CGG 0.518352 8_2:+58838090 None:intergenic
TGAGACGTTGTGTGACCCCA+AGG 0.519530 8_2:-58838267 Msa1257850:CDS
CAAATTTGTATCCACTACTT+GGG 0.533919 8_2:+58837497 None:intergenic
ATGCAGGTAGAAGATAATGT+TGG 0.534274 8_2:-58837643 Msa1257850:intron
ACTGCGCGTACACCAACAAC+CGG 0.534986 8_2:+58837376 None:intergenic
ATGAGCAATGGTGTTCTAGC+CGG 0.543808 8_2:-58837403 Msa1257850:CDS
TTCCAGAAGAATTCATTACT+GGG 0.551889 8_2:-58837450 Msa1257850:CDS
TCCATCTGATCAAGCACGAA+TGG 0.552084 8_2:+58838242 None:intergenic
GACATGGAGAAGATGGAAGC+TGG 0.555973 8_2:-58838170 Msa1257850:CDS
TGGTGTACGCGCAGTACTTG+TGG 0.572358 8_2:-58837368 Msa1257850:CDS
CTTTCCCTATAGTTTACTTG+GGG 0.575513 8_2:+58837616 None:intergenic
GAACCCATGGACCCAAGTAG+TGG 0.580505 8_2:-58837508 Msa1257850:CDS
AAATGTGAGGGTATTCCAGT+TGG 0.582925 8_2:-58837320 Msa1257850:CDS
CCTCTTTATCTTGGGATAAG+CGG 0.587821 8_2:+58838114 None:intergenic
GGTTTGAAAGATACTATAGC+CGG 0.593470 8_2:-58838290 Msa1257850:CDS
CTTGGGATAAGCGGAAAGAA+GGG 0.595180 8_2:+58838123 None:intergenic
ACACTTAGGGTGCTGACAGA+GGG 0.609839 8_2:-58836845 Msa1257850:intron
TACACTTAGGGTGCTGACAG+AGG 0.611332 8_2:-58836846 Msa1257850:intron
ACCCAAAACTAAAGCTGACA+TGG 0.611458 8_2:-58838186 Msa1257850:CDS
GGATGGTAATTACCATGATG+TGG 0.612641 8_2:-58837347 Msa1257850:CDS
GGGGTCACACAACGTCTCAC+CGG 0.615808 8_2:+58838271 None:intergenic
GAGACGTTGTGTGACCCCAA+GGG 0.619509 8_2:-58838266 Msa1257850:CDS
TCACATTTGAATCCACATCA+TGG 0.622810 8_2:+58837335 None:intergenic
CCGGACGATCATTCAAGGAA+CGG 0.623049 8_2:-58838090 Msa1257850:CDS
ACTGTCGAACTGCATTGAGT+AGG 0.624305 8_2:+58836814 None:intergenic
TGGTTACATCTGCAAATTGA+CGG 0.633657 8_2:+58837539 None:intergenic
TGGTTTAATCAAGCTTGCAG+AGG 0.635811 8_2:-58838150 Msa1257850:CDS
TCCAGAAGAATTCATTACTG+GGG 0.636103 8_2:-58837449 Msa1257850:CDS
CAATCTTAATAACAGGAACA+GGG 0.636579 8_2:+58838216 None:intergenic
TATCCCAAGATAAAGAGGAC+CGG 0.637725 8_2:-58838109 Msa1257850:CDS
GTGTTCAATAAACAATCAGG+TGG 0.650549 8_2:-58837565 Msa1257850:CDS
TTTCCGAAGTCACAGAAGTG+AGG 0.658776 8_2:-58837591 Msa1257850:CDS
TTGGAAGAGTGCATGAGCAA+TGG 0.663387 8_2:-58837415 Msa1257850:CDS
TGATGTGGATTCAAATGTGA+GGG 0.666011 8_2:-58837332 Msa1257850:CDS
ACTGCATTGAGTAGGATGCA+CGG 0.675584 8_2:+58836822 None:intergenic
GTACGCGCAGTACTTGTGGA+TGG 0.703304 8_2:-58837364 Msa1257850:CDS
ATGATGTGGATTCAAATGTG+AGG 0.710458 8_2:-58837333 Msa1257850:CDS
CAAGCACGAATGGACCCTTG+GGG 0.723589 8_2:+58838252 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCAAATTTAATAAATGAACA+TGG + chr8_2:58837994-58838013 None:intergenic 15.0%
!! TGTTCATTTATTAAATTTGA+AGG - chr8_2:58837994-58838013 Msa1257850:intron 15.0%
!! ATCGATAATAATTTGAAAAA+TGG + chr8_2:58838103-58838122 None:intergenic 15.0%
!! TCAAATTTAATAAATGAACA+TGG + chr8_2:58837994-58838013 None:intergenic 15.0%
!! TGTTCATTTATTAAATTTGA+AGG - chr8_2:58837994-58838013 Msa1257850:intron 15.0%
!! ATCGATAATAATTTGAAAAA+TGG + chr8_2:58838103-58838122 None:intergenic 15.0%
!! AAGGAAGTAATCATATAATA+GGG + chr8_2:58837323-58837342 None:intergenic 20.0%
!! ACAATTTCAACTTTCATTAT+AGG + chr8_2:58837855-58837874 None:intergenic 20.0%
!! AAGGAAGTAATCATATAATA+GGG + chr8_2:58837323-58837342 None:intergenic 20.0%
!! ACAATTTCAACTTTCATTAT+AGG + chr8_2:58837855-58837874 None:intergenic 20.0%
! TCAATTGCAATCTTAATAAC+AGG + chr8_2:58836887-58836906 None:intergenic 25.0%
!! ATTTTCTGTATCTGTTAACA+TGG - chr8_2:58837103-58837122 Msa1257850:intron 25.0%
! CCTTACTTCTTATTATGATT+TGG + chr8_2:58837177-58837196 None:intergenic 25.0%
! CCAAATCATAATAAGAAGTA+AGG - chr8_2:58837174-58837193 Msa1257850:intron 25.0%
! AACAAATAATCATCCTTGAT+CGG + chr8_2:58837280-58837299 None:intergenic 25.0%
! AGGAAGTAATCATATAATAG+GGG + chr8_2:58837322-58837341 None:intergenic 25.0%
! CAAGGAAGTAATCATATAAT+AGG + chr8_2:58837324-58837343 None:intergenic 25.0%
! TACATAAAACTGATGAAGAT+CGG + chr8_2:58837366-58837385 None:intergenic 25.0%
!! TATCTAATGTTTGTTAATGC+AGG - chr8_2:58837434-58837453 Msa1257850:CDS 25.0%
! ATTATAGGTTCAAGCATTAA+CGG + chr8_2:58837840-58837859 None:intergenic 25.0%
! TGTCACCAAAACTATTTATT+TGG + chr8_2:58837932-58837951 None:intergenic 25.0%
! CTTCATATTAATGACGTATA+TGG - chr8_2:58838045-58838064 Msa1257850:CDS 25.0%
!! GAATATTGTTTTCTTCCTTT+TGG - chr8_2:58838162-58838181 Msa1257850:CDS 25.0%
! TCAATTGCAATCTTAATAAC+AGG + chr8_2:58836887-58836906 None:intergenic 25.0%
!! ATTTTCTGTATCTGTTAACA+TGG - chr8_2:58837103-58837122 Msa1257850:intron 25.0%
! CCTTACTTCTTATTATGATT+TGG + chr8_2:58837177-58837196 None:intergenic 25.0%
! CCAAATCATAATAAGAAGTA+AGG - chr8_2:58837174-58837193 Msa1257850:intron 25.0%
! AACAAATAATCATCCTTGAT+CGG + chr8_2:58837280-58837299 None:intergenic 25.0%
! AGGAAGTAATCATATAATAG+GGG + chr8_2:58837322-58837341 None:intergenic 25.0%
! CAAGGAAGTAATCATATAAT+AGG + chr8_2:58837324-58837343 None:intergenic 25.0%
! TACATAAAACTGATGAAGAT+CGG + chr8_2:58837366-58837385 None:intergenic 25.0%
!! TATCTAATGTTTGTTAATGC+AGG - chr8_2:58837434-58837453 Msa1257850:CDS 25.0%
! ATTATAGGTTCAAGCATTAA+CGG + chr8_2:58837840-58837859 None:intergenic 25.0%
! TGTCACCAAAACTATTTATT+TGG + chr8_2:58837932-58837951 None:intergenic 25.0%
! CTTCATATTAATGACGTATA+TGG - chr8_2:58838045-58838064 Msa1257850:CDS 25.0%
!! GAATATTGTTTTCTTCCTTT+TGG - chr8_2:58838162-58838181 Msa1257850:CDS 25.0%
ATGGATATTGTTACTCTTGT+TGG - chr8_2:58836782-58836801 Msa1257850:CDS 30.0%
CAATCTTAATAACAGGAACA+GGG + chr8_2:58836880-58836899 None:intergenic 30.0%
TCGTCTCAAAAGAGAATTTA+AGG - chr8_2:58837054-58837073 Msa1257850:intron 30.0%
TCATGAAAAAAATGCTTACG+AGG - chr8_2:58837217-58837236 Msa1257850:CDS 30.0%
ACAGACATGGATTTATTCAA+GGG + chr8_2:58837254-58837273 None:intergenic 30.0%
AAGAAAAAGGAATCATCTCA+AGG + chr8_2:58837342-58837361 None:intergenic 30.0%
! TTTTCCCCAAGTAAACTATA+GGG - chr8_2:58837473-58837492 Msa1257850:CDS 30.0%
CATGTGTTCAATAAACAATC+AGG - chr8_2:58837525-58837544 Msa1257850:CDS 30.0%
CAAATTTGTATCCACTACTT+GGG + chr8_2:58837599-58837618 None:intergenic 30.0%
TCAAATTTGTATCCACTACT+TGG + chr8_2:58837600-58837619 None:intergenic 30.0%
TTCCAGAAGAATTCATTACT+GGG - chr8_2:58837643-58837662 Msa1257850:intron 30.0%
! TTCATTACTGGGGTTTTTAA+AGG - chr8_2:58837654-58837673 Msa1257850:intron 30.0%
GAACATTTAGGAGATGTAAT+TGG - chr8_2:58837885-58837904 Msa1257850:intron 30.0%
! AGAGGCCAAATAAATAGTTT+TGG - chr8_2:58837924-58837943 Msa1257850:intron 30.0%
TTGAATGTCACTACAAGTAT+TGG + chr8_2:58838074-58838093 None:intergenic 30.0%
! TATTGTTTTCTTCCTTTTGG+TGG - chr8_2:58838165-58838184 Msa1257850:CDS 30.0%
ATGGATATTGTTACTCTTGT+TGG - chr8_2:58836782-58836801 Msa1257850:CDS 30.0%
CAATCTTAATAACAGGAACA+GGG + chr8_2:58836880-58836899 None:intergenic 30.0%
TCGTCTCAAAAGAGAATTTA+AGG - chr8_2:58837054-58837073 Msa1257850:intron 30.0%
TCATGAAAAAAATGCTTACG+AGG - chr8_2:58837217-58837236 Msa1257850:CDS 30.0%
ACAGACATGGATTTATTCAA+GGG + chr8_2:58837254-58837273 None:intergenic 30.0%
AAGAAAAAGGAATCATCTCA+AGG + chr8_2:58837342-58837361 None:intergenic 30.0%
! TTTTCCCCAAGTAAACTATA+GGG - chr8_2:58837473-58837492 Msa1257850:CDS 30.0%
CATGTGTTCAATAAACAATC+AGG - chr8_2:58837525-58837544 Msa1257850:CDS 30.0%
CAAATTTGTATCCACTACTT+GGG + chr8_2:58837599-58837618 None:intergenic 30.0%
TCAAATTTGTATCCACTACT+TGG + chr8_2:58837600-58837619 None:intergenic 30.0%
TTCCAGAAGAATTCATTACT+GGG - chr8_2:58837643-58837662 Msa1257850:intron 30.0%
! TTCATTACTGGGGTTTTTAA+AGG - chr8_2:58837654-58837673 Msa1257850:intron 30.0%
GAACATTTAGGAGATGTAAT+TGG - chr8_2:58837885-58837904 Msa1257850:intron 30.0%
! AGAGGCCAAATAAATAGTTT+TGG - chr8_2:58837924-58837943 Msa1257850:intron 30.0%
TTGAATGTCACTACAAGTAT+TGG + chr8_2:58838074-58838093 None:intergenic 30.0%
! TATTGTTTTCTTCCTTTTGG+TGG - chr8_2:58838165-58838184 Msa1257850:CDS 30.0%
GGTTTGAAAGATACTATAGC+CGG - chr8_2:58836803-58836822 Msa1257850:CDS 35.0%
GCAATCTTAATAACAGGAAC+AGG + chr8_2:58836881-58836900 None:intergenic 35.0%
!!! TCCATGTCAGCTTTAGTTTT+GGG + chr8_2:58836911-58836930 None:intergenic 35.0%
!!! TCTTTTGAGACGATCAACAA+TGG + chr8_2:58837047-58837066 None:intergenic 35.0%
GACAGACATGGATTTATTCA+AGG + chr8_2:58837255-58837274 None:intergenic 35.0%
GATGAAGATCGGAAAGAAAA+AGG + chr8_2:58837355-58837374 None:intergenic 35.0%
ATGCAGGTAGAAGATAATGT+TGG - chr8_2:58837450-58837469 Msa1257850:CDS 35.0%
! GTTTTCCCCAAGTAAACTAT+AGG - chr8_2:58837472-58837491 Msa1257850:CDS 35.0%
CTTTCCCTATAGTTTACTTG+GGG + chr8_2:58837480-58837499 None:intergenic 35.0%
GCTTTCCCTATAGTTTACTT+GGG + chr8_2:58837481-58837500 None:intergenic 35.0%
TGCTTTCCCTATAGTTTACT+TGG + chr8_2:58837482-58837501 None:intergenic 35.0%
GTGTTCAATAAACAATCAGG+TGG - chr8_2:58837528-58837547 Msa1257850:CDS 35.0%
TGGTTACATCTGCAAATTGA+CGG + chr8_2:58837557-58837576 None:intergenic 35.0%
! AACCATACATTTTGAACCCA+TGG - chr8_2:58837572-58837591 Msa1257850:CDS 35.0%
CTTCCAGAAGAATTCATTAC+TGG - chr8_2:58837642-58837661 Msa1257850:intron 35.0%
TCCAGAAGAATTCATTACTG+GGG - chr8_2:58837644-58837663 Msa1257850:intron 35.0%
!! TACTGGGGTTTTTAAAGGAT+TGG - chr8_2:58837659-58837678 Msa1257850:intron 35.0%
TCACATTTGAATCCACATCA+TGG + chr8_2:58837761-58837780 None:intergenic 35.0%
ATGATGTGGATTCAAATGTG+AGG - chr8_2:58837760-58837779 Msa1257850:intron 35.0%
TGATGTGGATTCAAATGTGA+GGG - chr8_2:58837761-58837780 Msa1257850:intron 35.0%
GTTAGTCCTGAAGAACATTT+AGG - chr8_2:58837873-58837892 Msa1257850:intron 35.0%
ACATCTCCTAAATGTTCTTC+AGG + chr8_2:58837882-58837901 None:intergenic 35.0%
!!! AATAGTTTTGGTGACAAACC+AGG - chr8_2:58837936-58837955 Msa1257850:intron 35.0%
TACAGAAACATCTCAGCAAT+AGG + chr8_2:58838221-58838240 None:intergenic 35.0%
TTCTGTATGTCGATACACTT+AGG - chr8_2:58838234-58838253 Msa1257850:CDS 35.0%
TCTGTATGTCGATACACTTA+GGG - chr8_2:58838235-58838254 Msa1257850:CDS 35.0%
GGTTTGAAAGATACTATAGC+CGG - chr8_2:58836803-58836822 Msa1257850:CDS 35.0%
GCAATCTTAATAACAGGAAC+AGG + chr8_2:58836881-58836900 None:intergenic 35.0%
!!! TCCATGTCAGCTTTAGTTTT+GGG + chr8_2:58836911-58836930 None:intergenic 35.0%
!!! TCTTTTGAGACGATCAACAA+TGG + chr8_2:58837047-58837066 None:intergenic 35.0%
GACAGACATGGATTTATTCA+AGG + chr8_2:58837255-58837274 None:intergenic 35.0%
GATGAAGATCGGAAAGAAAA+AGG + chr8_2:58837355-58837374 None:intergenic 35.0%
ATGCAGGTAGAAGATAATGT+TGG - chr8_2:58837450-58837469 Msa1257850:CDS 35.0%
! GTTTTCCCCAAGTAAACTAT+AGG - chr8_2:58837472-58837491 Msa1257850:CDS 35.0%
CTTTCCCTATAGTTTACTTG+GGG + chr8_2:58837480-58837499 None:intergenic 35.0%
GCTTTCCCTATAGTTTACTT+GGG + chr8_2:58837481-58837500 None:intergenic 35.0%
TGCTTTCCCTATAGTTTACT+TGG + chr8_2:58837482-58837501 None:intergenic 35.0%
GTGTTCAATAAACAATCAGG+TGG - chr8_2:58837528-58837547 Msa1257850:CDS 35.0%
TGGTTACATCTGCAAATTGA+CGG + chr8_2:58837557-58837576 None:intergenic 35.0%
! AACCATACATTTTGAACCCA+TGG - chr8_2:58837572-58837591 Msa1257850:CDS 35.0%
CTTCCAGAAGAATTCATTAC+TGG - chr8_2:58837642-58837661 Msa1257850:intron 35.0%
TCCAGAAGAATTCATTACTG+GGG - chr8_2:58837644-58837663 Msa1257850:intron 35.0%
!! TACTGGGGTTTTTAAAGGAT+TGG - chr8_2:58837659-58837678 Msa1257850:intron 35.0%
TCACATTTGAATCCACATCA+TGG + chr8_2:58837761-58837780 None:intergenic 35.0%
ATGATGTGGATTCAAATGTG+AGG - chr8_2:58837760-58837779 Msa1257850:intron 35.0%
TGATGTGGATTCAAATGTGA+GGG - chr8_2:58837761-58837780 Msa1257850:intron 35.0%
GTTAGTCCTGAAGAACATTT+AGG - chr8_2:58837873-58837892 Msa1257850:intron 35.0%
ACATCTCCTAAATGTTCTTC+AGG + chr8_2:58837882-58837901 None:intergenic 35.0%
!!! AATAGTTTTGGTGACAAACC+AGG - chr8_2:58837936-58837955 Msa1257850:intron 35.0%
TACAGAAACATCTCAGCAAT+AGG + chr8_2:58838221-58838240 None:intergenic 35.0%
TTCTGTATGTCGATACACTT+AGG - chr8_2:58838234-58838253 Msa1257850:CDS 35.0%
TCTGTATGTCGATACACTTA+GGG - chr8_2:58838235-58838254 Msa1257850:CDS 35.0%
ACCCAAAACTAAAGCTGACA+TGG - chr8_2:58836907-58836926 Msa1257850:intron 40.0%
!! CTCCATGTCAGCTTTAGTTT+TGG + chr8_2:58836912-58836931 None:intergenic 40.0%
TAAAGCTGACATGGAGAAGA+TGG - chr8_2:58836916-58836935 Msa1257850:intron 40.0%
TGGTTTAATCAAGCTTGCAG+AGG - chr8_2:58836943-58836962 Msa1257850:intron 40.0%
CCTCTTTATCTTGGGATAAG+CGG + chr8_2:58836982-58837001 None:intergenic 40.0%
TATCCCAAGATAAAGAGGAC+CGG - chr8_2:58836984-58837003 Msa1257850:intron 40.0%
GTCCATGGGTTCAAAATGTA+TGG + chr8_2:58837577-58837596 None:intergenic 40.0%
ACCCCAGTAATGAATTCTTC+TGG + chr8_2:58837648-58837667 None:intergenic 40.0%
GGATGGTAATTACCATGATG+TGG - chr8_2:58837746-58837765 Msa1257850:intron 40.0%
!! AAATGTGAGGGTATTCCAGT+TGG - chr8_2:58837773-58837792 Msa1257850:intron 40.0%
AGGTTCAAGCATTAACGGTT+TGG + chr8_2:58837835-58837854 None:intergenic 40.0%
! GGAGATGTAATTGGTGATCT+CGG - chr8_2:58837894-58837913 Msa1257850:intron 40.0%
! CTGTTTTCACAACCACCAAA+AGG + chr8_2:58838180-58838199 None:intergenic 40.0%
!! CTTTTGGTGGTTGTGAAAAC+AGG - chr8_2:58838178-58838197 Msa1257850:CDS 40.0%
! TCAATGCAGTTCGACAGTTT+TGG - chr8_2:58838284-58838303 Msa1257850:CDS 40.0%
ACCCAAAACTAAAGCTGACA+TGG - chr8_2:58836907-58836926 Msa1257850:intron 40.0%
!! CTCCATGTCAGCTTTAGTTT+TGG + chr8_2:58836912-58836931 None:intergenic 40.0%
TAAAGCTGACATGGAGAAGA+TGG - chr8_2:58836916-58836935 Msa1257850:intron 40.0%
TGGTTTAATCAAGCTTGCAG+AGG - chr8_2:58836943-58836962 Msa1257850:intron 40.0%
CCTCTTTATCTTGGGATAAG+CGG + chr8_2:58836982-58837001 None:intergenic 40.0%
TATCCCAAGATAAAGAGGAC+CGG - chr8_2:58836984-58837003 Msa1257850:intron 40.0%
GTCCATGGGTTCAAAATGTA+TGG + chr8_2:58837577-58837596 None:intergenic 40.0%
ACCCCAGTAATGAATTCTTC+TGG + chr8_2:58837648-58837667 None:intergenic 40.0%
GGATGGTAATTACCATGATG+TGG - chr8_2:58837746-58837765 Msa1257850:intron 40.0%
!! AAATGTGAGGGTATTCCAGT+TGG - chr8_2:58837773-58837792 Msa1257850:intron 40.0%
AGGTTCAAGCATTAACGGTT+TGG + chr8_2:58837835-58837854 None:intergenic 40.0%
! GGAGATGTAATTGGTGATCT+CGG - chr8_2:58837894-58837913 Msa1257850:intron 40.0%
! CTGTTTTCACAACCACCAAA+AGG + chr8_2:58838180-58838199 None:intergenic 40.0%
!! CTTTTGGTGGTTGTGAAAAC+AGG - chr8_2:58838178-58838197 Msa1257850:CDS 40.0%
! TCAATGCAGTTCGACAGTTT+TGG - chr8_2:58838284-58838303 Msa1257850:CDS 40.0%
TCCATTCGTGCTTGATCAGA+TGG - chr8_2:58836850-58836869 Msa1257850:intron 45.0%
TCCATCTGATCAAGCACGAA+TGG + chr8_2:58836854-58836873 None:intergenic 45.0%
CTTGGGATAAGCGGAAAGAA+GGG + chr8_2:58836973-58836992 None:intergenic 45.0%
TCTTGGGATAAGCGGAAAGA+AGG + chr8_2:58836974-58836993 None:intergenic 45.0%
CCGCTTATCCCAAGATAAAG+AGG - chr8_2:58836979-58836998 Msa1257850:intron 45.0%
TTTCCGAAGTCACAGAAGTG+AGG - chr8_2:58837502-58837521 Msa1257850:CDS 45.0%
ATGCCTCACTTCTGTGACTT+CGG + chr8_2:58837508-58837527 None:intergenic 45.0%
TATCCACTACTTGGGTCCAT+GGG + chr8_2:58837591-58837610 None:intergenic 45.0%
! TTGGAAGAGTGCATGAGCAA+TGG - chr8_2:58837678-58837697 Msa1257850:intron 45.0%
ATGAGCAATGGTGTTCTAGC+CGG - chr8_2:58837690-58837709 Msa1257850:intron 45.0%
! TGGCAGCAAGAGAAGCTTTT+AGG - chr8_2:58837793-58837812 Msa1257850:intron 45.0%
! GGCAGCAAGAGAAGCTTTTA+GGG - chr8_2:58837794-58837813 Msa1257850:intron 45.0%
!! GCAAGAGAAGCTTTTAGGGA+AGG - chr8_2:58837798-58837817 Msa1257850:intron 45.0%
!! AGTTTTGGTGACAAACCAGG+TGG - chr8_2:58837939-58837958 Msa1257850:intron 45.0%
! TTGGTGGTTGTGAAAACAGG+TGG - chr8_2:58838181-58838200 Msa1257850:CDS 45.0%
ACTGCATTGAGTAGGATGCA+CGG + chr8_2:58838274-58838293 None:intergenic 45.0%
ACTGTCGAACTGCATTGAGT+AGG + chr8_2:58838282-58838301 None:intergenic 45.0%
!! GCAGTTCGACAGTTTTGGTA+CGG - chr8_2:58838289-58838308 Msa1257850:CDS 45.0%
TCCATTCGTGCTTGATCAGA+TGG - chr8_2:58836850-58836869 Msa1257850:intron 45.0%
TCCATCTGATCAAGCACGAA+TGG + chr8_2:58836854-58836873 None:intergenic 45.0%
CTTGGGATAAGCGGAAAGAA+GGG + chr8_2:58836973-58836992 None:intergenic 45.0%
TCTTGGGATAAGCGGAAAGA+AGG + chr8_2:58836974-58836993 None:intergenic 45.0%
CCGCTTATCCCAAGATAAAG+AGG - chr8_2:58836979-58836998 Msa1257850:intron 45.0%
TTTCCGAAGTCACAGAAGTG+AGG - chr8_2:58837502-58837521 Msa1257850:CDS 45.0%
ATGCCTCACTTCTGTGACTT+CGG + chr8_2:58837508-58837527 None:intergenic 45.0%
TATCCACTACTTGGGTCCAT+GGG + chr8_2:58837591-58837610 None:intergenic 45.0%
! TTGGAAGAGTGCATGAGCAA+TGG - chr8_2:58837678-58837697 Msa1257850:intron 45.0%
ATGAGCAATGGTGTTCTAGC+CGG - chr8_2:58837690-58837709 Msa1257850:intron 45.0%
! TGGCAGCAAGAGAAGCTTTT+AGG - chr8_2:58837793-58837812 Msa1257850:intron 45.0%
! GGCAGCAAGAGAAGCTTTTA+GGG - chr8_2:58837794-58837813 Msa1257850:intron 45.0%
!! GCAAGAGAAGCTTTTAGGGA+AGG - chr8_2:58837798-58837817 Msa1257850:intron 45.0%
!! AGTTTTGGTGACAAACCAGG+TGG - chr8_2:58837939-58837958 Msa1257850:intron 45.0%
! TTGGTGGTTGTGAAAACAGG+TGG - chr8_2:58838181-58838200 Msa1257850:CDS 45.0%
ACTGCATTGAGTAGGATGCA+CGG + chr8_2:58838274-58838293 None:intergenic 45.0%
ACTGTCGAACTGCATTGAGT+AGG + chr8_2:58838282-58838301 None:intergenic 45.0%
!! GCAGTTCGACAGTTTTGGTA+CGG - chr8_2:58838289-58838308 Msa1257850:CDS 45.0%
TCAAGCACGAATGGACCCTT+GGG + chr8_2:58836845-58836864 None:intergenic 50.0%
ATCAAGCACGAATGGACCCT+TGG + chr8_2:58836846-58836865 None:intergenic 50.0%
GACATGGAGAAGATGGAAGC+TGG - chr8_2:58836923-58836942 Msa1257850:intron 50.0%
CGTCCGGTCCTCTTTATCTT+GGG + chr8_2:58836990-58837009 None:intergenic 50.0%
TCGTCCGGTCCTCTTTATCT+TGG + chr8_2:58836991-58837010 None:intergenic 50.0%
CCGTTCCTTGAATGATCGTC+CGG + chr8_2:58837006-58837025 None:intergenic 50.0%
CCGGACGATCATTCAAGGAA+CGG - chr8_2:58837003-58837022 Msa1257850:intron 50.0%
CGGACGATCATTCAAGGAAC+GGG - chr8_2:58837004-58837023 Msa1257850:intron 50.0%
CCTTGATCGGATGACAGACA+TGG + chr8_2:58837267-58837286 None:intergenic 50.0%
CCATGTCTGTCATCCGATCA+AGG - chr8_2:58837264-58837283 Msa1257850:CDS 50.0%
GTATCCACTACTTGGGTCCA+TGG + chr8_2:58837592-58837611 None:intergenic 50.0%
TACACCAACAACCGGAAAGC+CGG + chr8_2:58837712-58837731 None:intergenic 50.0%
AAGCTTCTCTTGCTGCCAAC+TGG + chr8_2:58837791-58837810 None:intergenic 50.0%
GGTGATCTCGGCAGAAAAAG+AGG - chr8_2:58837906-58837925 Msa1257850:intron 50.0%
! TGACAAACCAGGTGGACTCA+AGG - chr8_2:58837947-58837966 Msa1257850:intron 50.0%
TGACTTACCTTGAGTCCACC+TGG + chr8_2:58837957-58837976 None:intergenic 50.0%
!! TACACTTAGGGTGCTGACAG+AGG - chr8_2:58838247-58838266 Msa1257850:CDS 50.0%
!! ACACTTAGGGTGCTGACAGA+GGG - chr8_2:58838248-58838267 Msa1257850:CDS 50.0%
TCAAGCACGAATGGACCCTT+GGG + chr8_2:58836845-58836864 None:intergenic 50.0%
ATCAAGCACGAATGGACCCT+TGG + chr8_2:58836846-58836865 None:intergenic 50.0%
GACATGGAGAAGATGGAAGC+TGG - chr8_2:58836923-58836942 Msa1257850:intron 50.0%
CGTCCGGTCCTCTTTATCTT+GGG + chr8_2:58836990-58837009 None:intergenic 50.0%
TCGTCCGGTCCTCTTTATCT+TGG + chr8_2:58836991-58837010 None:intergenic 50.0%
CCGTTCCTTGAATGATCGTC+CGG + chr8_2:58837006-58837025 None:intergenic 50.0%
CCGGACGATCATTCAAGGAA+CGG - chr8_2:58837003-58837022 Msa1257850:intron 50.0%
CGGACGATCATTCAAGGAAC+GGG - chr8_2:58837004-58837023 Msa1257850:intron 50.0%
CCTTGATCGGATGACAGACA+TGG + chr8_2:58837267-58837286 None:intergenic 50.0%
CCATGTCTGTCATCCGATCA+AGG - chr8_2:58837264-58837283 Msa1257850:CDS 50.0%
GTATCCACTACTTGGGTCCA+TGG + chr8_2:58837592-58837611 None:intergenic 50.0%
TACACCAACAACCGGAAAGC+CGG + chr8_2:58837712-58837731 None:intergenic 50.0%
AAGCTTCTCTTGCTGCCAAC+TGG + chr8_2:58837791-58837810 None:intergenic 50.0%
GGTGATCTCGGCAGAAAAAG+AGG - chr8_2:58837906-58837925 Msa1257850:intron 50.0%
! TGACAAACCAGGTGGACTCA+AGG - chr8_2:58837947-58837966 Msa1257850:intron 50.0%
TGACTTACCTTGAGTCCACC+TGG + chr8_2:58837957-58837976 None:intergenic 50.0%
!! TACACTTAGGGTGCTGACAG+AGG - chr8_2:58838247-58838266 Msa1257850:CDS 50.0%
!! ACACTTAGGGTGCTGACAGA+GGG - chr8_2:58838248-58838267 Msa1257850:CDS 50.0%
TGAGACGTTGTGTGACCCCA+AGG - chr8_2:58836826-58836845 Msa1257850:CDS 55.0%
GAGACGTTGTGTGACCCCAA+GGG - chr8_2:58836827-58836846 Msa1257850:CDS 55.0%
CAAGCACGAATGGACCCTTG+GGG + chr8_2:58836844-58836863 None:intergenic 55.0%
GAGGACCGGACGATCATTCA+AGG - chr8_2:58836998-58837017 Msa1257850:intron 55.0%
GAACCCATGGACCCAAGTAG+TGG - chr8_2:58837585-58837604 Msa1257850:CDS 55.0%
! TGGTGTTCTAGCCGGCTTTC+CGG - chr8_2:58837698-58837717 Msa1257850:intron 55.0%
ACTGCGCGTACACCAACAAC+CGG + chr8_2:58837720-58837739 None:intergenic 55.0%
TGGTGTACGCGCAGTACTTG+TGG - chr8_2:58837725-58837744 Msa1257850:intron 55.0%
GTACGCGCAGTACTTGTGGA+TGG - chr8_2:58837729-58837748 Msa1257850:intron 55.0%
TGAGACGTTGTGTGACCCCA+AGG - chr8_2:58836826-58836845 Msa1257850:CDS 55.0%
GAGACGTTGTGTGACCCCAA+GGG - chr8_2:58836827-58836846 Msa1257850:CDS 55.0%
CAAGCACGAATGGACCCTTG+GGG + chr8_2:58836844-58836863 None:intergenic 55.0%
GAGGACCGGACGATCATTCA+AGG - chr8_2:58836998-58837017 Msa1257850:intron 55.0%
GAACCCATGGACCCAAGTAG+TGG - chr8_2:58837585-58837604 Msa1257850:CDS 55.0%
! TGGTGTTCTAGCCGGCTTTC+CGG - chr8_2:58837698-58837717 Msa1257850:intron 55.0%
ACTGCGCGTACACCAACAAC+CGG + chr8_2:58837720-58837739 None:intergenic 55.0%
TGGTGTACGCGCAGTACTTG+TGG - chr8_2:58837725-58837744 Msa1257850:intron 55.0%
GTACGCGCAGTACTTGTGGA+TGG - chr8_2:58837729-58837748 Msa1257850:intron 55.0%
GGGGTCACACAACGTCTCAC+CGG + chr8_2:58836825-58836844 None:intergenic 60.0%
! CTAGCCGGCTTTCCGGTTGT+TGG - chr8_2:58837705-58837724 Msa1257850:intron 60.0%
GGGGTCACACAACGTCTCAC+CGG + chr8_2:58836825-58836844 None:intergenic 60.0%
! CTAGCCGGCTTTCCGGTTGT+TGG - chr8_2:58837705-58837724 Msa1257850:intron 60.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 58836782 58838333 58836782 ID=Msa1257850;Name=Msa1257850
chr8_2 mRNA 58836782 58838333 58836782 ID=Msa1257850-mRNA-1;Parent=Msa1257850;Name=Msa1257850-mRNA-1;_AED=0.41;_eAED=0.47;_QI=0|0.5|0|1|1|1|3|0|271
chr8_2 exon 58838040 58838333 58838040 ID=Msa1257850-mRNA-1:exon:18223;Parent=Msa1257850-mRNA-1
chr8_2 exon 58837216 58837659 58837216 ID=Msa1257850-mRNA-1:exon:18222;Parent=Msa1257850-mRNA-1
chr8_2 exon 58836782 58836859 58836782 ID=Msa1257850-mRNA-1:exon:18221;Parent=Msa1257850-mRNA-1
chr8_2 CDS 58838040 58838333 58838040 ID=Msa1257850-mRNA-1:cds;Parent=Msa1257850-mRNA-1
chr8_2 CDS 58837216 58837659 58837216 ID=Msa1257850-mRNA-1:cds;Parent=Msa1257850-mRNA-1
chr8_2 CDS 58836782 58836859 58836782 ID=Msa1257850-mRNA-1:cds;Parent=Msa1257850-mRNA-1
Gene Sequence

>Msa1257850

ATGGATATTGTTACTCTTGTTGGTTTGAAAGATACTATAGCCGGTGAGACGTTGTGTGACCCCAAGGGTCCATTCGTGCTTGATCAGATGGACTTCCCTGTTCCTGTTATTAAGATTGCAATTGAACCCAAAACTAAAGCTGACATGGAGAAGATGGAAGCTGGTTTAATCAAGCTTGCAGAGGAAGACCCTTCTTTCCGCTTATCCCAAGATAAAGAGGACCGGACGATCATTCAAGGAACGGGAGAATTGCATCTTGAAACCATTGTTGATCGTCTCAAAAGAGAATTTAAGGTAGAAGATAATGTTGGTTTTCCCCAAGTAAACTATAGGGAAAGCATTTCCGAAGTCACAGAAGTGAGGCATGTGTTCAATAAACAATCAGGTGGACACCGTCAATTTGCAGATGTAACCATACATTTTGAACCCATGGACCCAAGTAGTGGATACAAATTTGAGAATAAAATCAAAGAAGAAGCACTTCCAGAAGAATTCATTACTGGGGTTTTTAAAGGATTGGAAGAGTGCATGAGCAATGGTGTTCTAGCCGGCTTTCCGGTTGTTGGTGTACGCGCAGTACTTGTGGATGGTAATTACCATGATGTGGATTCAAATGTGAGGGTATTCCAGTTGGCAGCAAGAGAAGCTTTTAGGGAAGGAATGAGAAAAGCCAAACCGTTAATGCTTGAACCTATAATGAAAGTTGAAATTGTTAGTCCTGAAGAACATTTAGGAGATGGTGCTGACAGAGGGCCGTGCATCCTACTCAATGCAGTTCGACAGTTTTGGTACGGTATCTCGAAACATTCAGAATGA

Protein sequence

>Msa1257850

MDIVTLVGLKDTIAGETLCDPKGPFVLDQMDFPVPVIKIAIEPKTKADMEKMEAGLIKLAEEDPSFRLSQDKEDRTIIQGTGELHLETIVDRLKREFKVEDNVGFPQVNYRESISEVTEVRHVFNKQSGGHRQFADVTIHFEPMDPSSGYKFENKIKEEALPEEFITGVFKGLEECMSNGVLAGFPVVGVRAVLVDGNYHDVDSNVRVFQLAAREAFREGMRKAKPLMLEPIMKVEIVSPEEHLGDGADRGPCILLNAVRQFWYGISKHSE*