AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1331380


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1331380 MtrunA17_Chr4g0056161 97.087 206 5 1 1 205 1 206 6.23e-141 402
Msa1331380 MtrunA17_Chr8g0389541 39.344 122 66 4 88 205 31 148 3.30e-19 85.9
Msa1331380 MtrunA17_Chr7g0263951 36.719 128 67 6 88 205 48 171 1.62e-15 75.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1331380 AT4G17300.1 61.538 182 53 3 41 205 45 226 8.08e-66 213
Msa1331380 AT4G17300.2 61.538 182 53 3 41 205 65 246 1.26e-65 213
Msa1331380 AT1G70980.1 41.129 124 63 5 88 205 47 166 1.44e-19 87.4
Msa1331380 AT5G56680.1 38.235 136 74 5 76 205 38 169 5.79e-19 85.5

Find 63 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGTGGTGTCTGGCAGTTTA+TGG 0.204378 8_4:+50900682 Msa1331380:intron
CGGCAACACTCTCGTCCTTC+AGG 0.246810 8_4:+50897855 Msa1331380:CDS
TTCTAATATGCAATGTGTAT+TGG 0.346387 8_4:+50898095 Msa1331380:CDS
CGTGCAAGGACAAATACTTT+TGG 0.359093 8_4:+50899414 Msa1331380:CDS
GAGGAGGAGAAGGGAGAAGA+AGG 0.380253 8_4:-50897715 None:intergenic
ATCTACCATTGCGGCACTAT+AGG 0.397174 8_4:-50900745 None:intergenic
ATATTATTATTAGGTAGAAT+CGG 0.414667 8_4:+50899013 Msa1331380:intron
ACTGATGTTGCAGTGGTGTC+TGG 0.425768 8_4:+50900672 Msa1331380:intron
TGCAGAAGATACGGCGGCGG+TGG 0.427232 8_4:-50897738 None:intergenic
GATACGGCGGCGGTGGGAGG+AGG 0.431590 8_4:-50897731 None:intergenic
CACTCTCGTCCTTCAGGGAT+GGG 0.433306 8_4:+50897861 Msa1331380:CDS
CGACGACTTTGAGCTTCTTA+CGG 0.459788 8_4:-50897804 None:intergenic
GGCAACACTCTCGTCCTTCA+GGG 0.460545 8_4:+50897856 Msa1331380:CDS
GCGGCGGTGGGAGGAGGAGA+AGG 0.462357 8_4:-50897725 None:intergenic
TGAGAACGGAGGAGAAAAGA+AGG 0.463565 8_4:-50897685 None:intergenic
TATTATTATTAGGTAGAATC+GGG 0.472422 8_4:+50899014 Msa1331380:intron
ACACTCTCGTCCTTCAGGGA+TGG 0.477744 8_4:+50897860 Msa1331380:CDS
ACGGAATTGTGGAACCTTGT+TGG 0.481783 8_4:-50897785 None:intergenic
GAGAAGGGAGAAGAAGGAAG+AGG 0.484917 8_4:-50897709 None:intergenic
TGAGGTTGAAGGTTATGATC+AGG 0.492658 8_4:+50898122 Msa1331380:CDS
GCAAAAGCTGCGTAACTGAA+TGG 0.499500 8_4:-50897637 None:intergenic
TGTTGCGTTTAGATTAATGA+TGG 0.500436 8_4:+50898063 Msa1331380:intron
TCTGGCAGTTTATGGTGGAT+TGG 0.502069 8_4:+50900690 Msa1331380:CDS
AAGAAGGAAGAGGATGAGAA+CGG 0.507936 8_4:-50897699 None:intergenic
TTGAGCTTCTTACGGAATTG+TGG 0.508941 8_4:-50897796 None:intergenic
TGCAATCCCGCATTTATATG+TGG 0.512015 8_4:-50900721 None:intergenic
AAAATTCCACATATAAATGC+GGG 0.513250 8_4:+50900715 Msa1331380:CDS
GCAGAAGATACGGCGGCGGT+GGG 0.519517 8_4:-50897737 None:intergenic
GAGTAGCGGTGCAGAAGATA+CGG 0.525095 8_4:-50897747 None:intergenic
GGTGCATCTGTGTGGGTGCA+AGG 0.532793 8_4:+50899050 Msa1331380:CDS
GAAGATACGGCGGCGGTGGG+AGG 0.535209 8_4:-50897734 None:intergenic
TGGAACCTTGTTGGTGGCGT+CGG 0.536323 8_4:-50897776 None:intergenic
CGGCGGTGGGAGGAGGAGAA+GGG 0.545990 8_4:-50897724 None:intergenic
GAAGCTCAACAAAATAGTAC+AGG 0.550415 8_4:+50899115 Msa1331380:CDS
GAATCGGGCTTGATTACCAC+TGG 0.564483 8_4:+50899029 Msa1331380:CDS
TGGTGTCTGGCAGTTTATGG+TGG 0.565816 8_4:+50900685 Msa1331380:CDS
GACGATCAATTCGATTCCCT+CGG 0.572461 8_4:+50897835 Msa1331380:CDS
GAGTACGAACCCATCCCTGA+AGG 0.578582 8_4:-50897870 None:intergenic
AAGGAAGAGGATGAGAACGG+AGG 0.581539 8_4:-50897696 None:intergenic
CCTTGTTGGTGGCGTCGGAA+GGG 0.582841 8_4:-50897771 None:intergenic
CAAAAGCACATCTTCGTGCA+AGG 0.585364 8_4:+50899400 Msa1331380:CDS
GAAGCAAATGAGTGTTGCAA+TGG 0.585908 8_4:+50897588 Msa1331380:exon
CCCTTCCGACGCCACCAACA+AGG 0.590417 8_4:+50897771 Msa1331380:CDS
TAAAATTCCACATATAAATG+CGG 0.592912 8_4:+50900714 Msa1331380:CDS
AACGGATATAGGAGTTGTCA+AGG 0.593144 8_4:+50897545 None:intergenic
TACCACTGGTGCATCTGTGT+GGG 0.602852 8_4:+50899043 Msa1331380:CDS
GGAGTTGTGGTTAAGAGCCA+AGG 0.604507 8_4:+50899071 Msa1331380:CDS
GAAGGACGAGAGTGTTGCCG+AGG 0.614836 8_4:-50897852 None:intergenic
GAATTGTGGAACCTTGTTGG+TGG 0.615591 8_4:-50897782 None:intergenic
AAGGACGAGAGTGTTGCCGA+GGG 0.621447 8_4:-50897851 None:intergenic
TGTGTGGGTGCAAGGAGTTG+TGG 0.625198 8_4:+50899058 Msa1331380:CDS
TGCAACCTATAGTGCCGCAA+TGG 0.625572 8_4:+50900740 Msa1331380:CDS
TTACCACTGGTGCATCTGTG+TGG 0.625856 8_4:+50899042 Msa1331380:CDS
CACCCACACAGATGCACCAG+TGG 0.627639 8_4:-50899045 None:intergenic
GTATTGGACACTGAGGTTGA+AGG 0.631094 8_4:+50898111 Msa1331380:CDS
CGGTGCAGAAGATACGGCGG+CGG 0.637252 8_4:-50897741 None:intergenic
GAGTAGCGTCACTTTCCTCG+AGG 0.642569 8_4:+50897903 Msa1331380:CDS
TGAGTGTTGCAATGGCAACA+AGG 0.644645 8_4:+50897596 Msa1331380:CDS
AATGGTTTAACTATGCGTAA+CGG 0.658463 8_4:-50897619 None:intergenic
TGAAGCGCCATCTACCATTG+CGG 0.686539 8_4:-50900754 None:intergenic
GGCGTCGGAAGGGAGAGTAG+CGG 0.696542 8_4:-50897761 None:intergenic
TAGCGGTGCAGAAGATACGG+CGG 0.728344 8_4:-50897744 None:intergenic
GCAATGTGTATTGGACACTG+AGG 0.779503 8_4:+50898104 Msa1331380:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATGTCATTTTATATTTAAAA+AGG + chr8_4:50898831-50898850 Msa1331380:intron 10.0%
!! AGCTTATTTATATTATTATT+AGG + chr8_4:50899004-50899023 Msa1331380:intron 10.0%
!!! ATTTAAATCTTTAATTTCTT+TGG + chr8_4:50899299-50899318 Msa1331380:intron 10.0%
!! ATAAATTTATTTATTCCATA+AGG + chr8_4:50899801-50899820 Msa1331380:intron 10.0%
!! AATAAAATTGACAATTGAAT+CGG - chr8_4:50897947-50897966 None:intergenic 15.0%
!! GAAAATAACAAGTTTAAAAA+TGG - chr8_4:50898311-50898330 None:intergenic 15.0%
!! ATATTATTATTAGGTAGAAT+CGG + chr8_4:50899013-50899032 Msa1331380:intron 15.0%
!!! AAAAAAAAAGTATAAGCATA+AGG - chr8_4:50899183-50899202 None:intergenic 15.0%
!! TAAAAATAACGATAAATTCT+AGG + chr8_4:50900458-50900477 Msa1331380:intron 15.0%
!!! AAGATAAATTTGAGACTTAA+AGG + chr8_4:50898633-50898652 Msa1331380:intron 20.0%
!! AAAGGTTATTAAGCATATTA+TGG + chr8_4:50898651-50898670 Msa1331380:intron 20.0%
!!! TAAAATGAAATAACCTCTTT+TGG - chr8_4:50898773-50898792 None:intergenic 20.0%
!! TATTATTATTAGGTAGAATC+GGG + chr8_4:50899014-50899033 Msa1331380:intron 20.0%
!! AGGAATAAAAAGAACAATAT+AGG - chr8_4:50899163-50899182 None:intergenic 20.0%
!! ATTTAAATCAGTCTATTAAC+AGG - chr8_4:50899287-50899306 None:intergenic 20.0%
!! TAGAAATTGCATTTCATAAT+TGG - chr8_4:50899589-50899608 None:intergenic 20.0%
!! NNNNACATTACCTGTATAAA+AGG + chr8_4:50899760-50899779 Msa1331380:intron 20.0%
!! AATTTATTTATTCCATAAGG+TGG + chr8_4:50899804-50899823 Msa1331380:intron 20.0%
!!! AAATTGCAATCCTAATTTTT+TGG + chr8_4:50900190-50900209 Msa1331380:intron 20.0%
!! CATGTATTATGAAATGTTTA+GGG + chr8_4:50900418-50900437 Msa1331380:intron 20.0%
!! TAAAATTCCACATATAAATG+CGG + chr8_4:50900714-50900733 Msa1331380:CDS 20.0%
! TTCTAATATGCAATGTGTAT+TGG + chr8_4:50898095-50898114 Msa1331380:CDS 25.0%
! AGCTTATTGGATTAACTTAA+AGG + chr8_4:50898187-50898206 Msa1331380:intron 25.0%
! TCTTAAAAATGATCAGTTGA+CGG + chr8_4:50898568-50898587 Msa1331380:intron 25.0%
! ATAAATTGCAGTAAAGATGA+AGG - chr8_4:50899523-50899542 None:intergenic 25.0%
! AATTGCATTTCATAATTGGA+TGG - chr8_4:50899585-50899604 None:intergenic 25.0%
!!! CTTAGCTTTAAGATGATTTT+TGG - chr8_4:50899918-50899937 None:intergenic 25.0%
! CAAAAATCATCTTAAAGCTA+AGG + chr8_4:50899916-50899935 Msa1331380:intron 25.0%
!!! GTAGATCTGAAGTTTTTTAT+TGG + chr8_4:50900016-50900035 Msa1331380:intron 25.0%
! TATAAAAGTTCCATACAACA+GGG - chr8_4:50900233-50900252 None:intergenic 25.0%
! ACATCAATTATAAGGATAGA+GGG - chr8_4:50900273-50900292 None:intergenic 25.0%
! AACATCAATTATAAGGATAG+AGG - chr8_4:50900274-50900293 None:intergenic 25.0%
! TAGAAGCAACATCAATTATA+AGG - chr8_4:50900281-50900300 None:intergenic 25.0%
! GCATGTATTATGAAATGTTT+AGG + chr8_4:50900417-50900436 Msa1331380:intron 25.0%
! TAATCTATATTATACGCCAA+AGG + chr8_4:50900536-50900555 Msa1331380:intron 25.0%
! AAAATTCCACATATAAATGC+GGG + chr8_4:50900715-50900734 Msa1331380:CDS 25.0%
AATGGTTTAACTATGCGTAA+CGG - chr8_4:50897622-50897641 None:intergenic 30.0%
AATTGAATCGGTGAATTGAA+TGG - chr8_4:50897935-50897954 None:intergenic 30.0%
ACTAAAATGCAATGCACATT+AGG - chr8_4:50897988-50898007 None:intergenic 30.0%
!!! GCATTGCATTTTAGTTTGAT+TGG + chr8_4:50897993-50898012 Msa1331380:intron 30.0%
TTCAATTGTTTAACTGATCG+AGG + chr8_4:50898020-50898039 Msa1331380:intron 30.0%
TGTTGCGTTTAGATTAATGA+TGG + chr8_4:50898063-50898082 Msa1331380:intron 30.0%
! TAAGCTATAAGCTAGCTTAT+TGG - chr8_4:50898173-50898192 None:intergenic 30.0%
! TAAGCTAGCTTATAGCTTAT+TGG + chr8_4:50898174-50898193 Msa1331380:intron 30.0%
TTGATAAAACTAGACGTGTT+TGG + chr8_4:50898215-50898234 Msa1331380:intron 30.0%
! ACCAGCTTATAGTTTTTCTT+TGG + chr8_4:50898253-50898272 Msa1331380:intron 30.0%
! ACTTTGTGCTTTTCATTTAG+TGG + chr8_4:50898730-50898749 Msa1331380:intron 30.0%
TTTAGTGGTAACTGAAAAGT+AGG + chr8_4:50898745-50898764 Msa1331380:intron 30.0%
GTTGACTGAAATAAAACATC+TGG - chr8_4:50898867-50898886 None:intergenic 30.0%
! TCTTTTCTTTTGGATAGGAA+AGG - chr8_4:50899358-50899377 None:intergenic 30.0%
AGGTAAACATGCTAAAGAAA+AGG - chr8_4:50899451-50899470 None:intergenic 30.0%
AAAAGATTCTCAACCAAGAA+AGG + chr8_4:50900043-50900062 Msa1331380:intron 30.0%
CAGCATTTATATTCCTTTCT+TGG - chr8_4:50900059-50900078 None:intergenic 30.0%
!! GAACTTGATCTTTGATTTGA+TGG - chr8_4:50900125-50900144 None:intergenic 30.0%
!! TTTCAATCTCCGATTTTAGT+TGG - chr8_4:50900173-50900192 None:intergenic 30.0%
CTATAAAAGTTCCATACAAC+AGG - chr8_4:50900234-50900253 None:intergenic 30.0%
!!! ATGCCTGTAGGTTATTTTTT+GGG - chr8_4:50900370-50900389 None:intergenic 30.0%
!!! TATGCCTGTAGGTTATTTTT+TGG - chr8_4:50900371-50900390 None:intergenic 30.0%
TGGCGTATAATATAGATTAG+TGG - chr8_4:50900535-50900554 None:intergenic 30.0%
ATATTATACGCCAAAGGTTA+AGG + chr8_4:50900542-50900561 Msa1331380:intron 30.0%
TATTATACGCCAAAGGTTAA+GGG + chr8_4:50900543-50900562 Msa1331380:intron 30.0%
ATTGAATGGAAATAACCTCG+AGG - chr8_4:50897921-50897940 None:intergenic 35.0%
! TGCACATTAGGTTAACTTGA+AGG - chr8_4:50897976-50897995 None:intergenic 35.0%
GCCAAAGAAAAACTATAAGC+TGG - chr8_4:50898257-50898276 None:intergenic 35.0%
AAAGAGCAATGTCATGATCA+TGG - chr8_4:50898426-50898445 None:intergenic 35.0%
ATGGAGAATAAGCGTGTTAA+AGG + chr8_4:50898670-50898689 Msa1331380:intron 35.0%
AGCGTGTTAAAGGAATTTGT+AGG + chr8_4:50898680-50898699 Msa1331380:intron 35.0%
GCGTGTTAAAGGAATTTGTA+GGG + chr8_4:50898681-50898700 Msa1331380:intron 35.0%
CGTGTTAAAGGAATTTGTAG+GGG + chr8_4:50898682-50898701 Msa1331380:intron 35.0%
! GGGAAAAAGAAGTGTGTTAA+AGG + chr8_4:50898702-50898721 Msa1331380:intron 35.0%
GAAGCTCAACAAAATAGTAC+AGG + chr8_4:50899115-50899134 Msa1331380:CDS 35.0%
!! TTCTTTGGTCTTACATGTTC+AGG + chr8_4:50899314-50899333 Msa1331380:intron 35.0%
! TTCTTTTGGATAGGAAAGGA+TGG - chr8_4:50899354-50899373 None:intergenic 35.0%
! CTGACTCTTTTCTTTTGGAT+AGG - chr8_4:50899363-50899382 None:intergenic 35.0%
CAATGACATAAGCATTAAGC+AGG - chr8_4:50899475-50899494 None:intergenic 35.0%
! ATACGTGCATCCTTTTATAC+AGG - chr8_4:50899773-50899792 None:intergenic 35.0%
! GTCTTCTATTTTCCACCTTA+TGG - chr8_4:50899819-50899838 None:intergenic 35.0%
!!! ACTAGTTTTATGTCCTCTTC+TGG - chr8_4:50899967-50899986 None:intergenic 35.0%
! TTGATGGTCATAGTAATGAG+TGG - chr8_4:50900109-50900128 None:intergenic 35.0%
!!! TGCAATCCTAATTTTTTGGC+TGG + chr8_4:50900194-50900213 Msa1331380:intron 35.0%
CAATTATAAGGATAGAGGGA+AGG - chr8_4:50900269-50900288 None:intergenic 35.0%
!!! TGTAGGTTATTTTTTGGGGA+GGG - chr8_4:50900365-50900384 None:intergenic 35.0%
!!! TGCCTGTAGGTTATTTTTTG+GGG - chr8_4:50900369-50900388 None:intergenic 35.0%
! GAAGCAAATGAGTGTTGCAA+TGG + chr8_4:50897588-50897607 Msa1331380:exon 40.0%
AAGAAGGAAGAGGATGAGAA+CGG - chr8_4:50897702-50897721 None:intergenic 40.0%
TTGAGCTTCTTACGGAATTG+TGG - chr8_4:50897799-50897818 None:intergenic 40.0%
TGAGGTTGAAGGTTATGATC+AGG + chr8_4:50898122-50898141 Msa1331380:CDS 40.0%
ATATGGAAAGAACAAGTGCG+CGG - chr8_4:50898388-50898407 None:intergenic 40.0%
GGTGCAAAGTGCATGTTATA+TGG - chr8_4:50898405-50898424 None:intergenic 40.0%
AAATGATCAGTTGACGGAGT+CGG + chr8_4:50898574-50898593 Msa1331380:intron 40.0%
TGAAAAGTAGGAGCCAAAAG+AGG + chr8_4:50898757-50898776 Msa1331380:intron 40.0%
AAACAGAGCTTTACTTGTCG+CGG + chr8_4:50898947-50898966 Msa1331380:intron 40.0%
!! CGACTTTCTGTTTTGTTCCT+TGG - chr8_4:50899091-50899110 None:intergenic 40.0%
!! TTGGTCTTACATGTTCAGGT+TGG + chr8_4:50899318-50899337 Msa1331380:intron 40.0%
!!! CTCTGCTGACTCTTTTCTTT+TGG - chr8_4:50899368-50899387 None:intergenic 40.0%
! CGTGCAAGGACAAATACTTT+TGG + chr8_4:50899414-50899433 Msa1331380:CDS 40.0%
GACATAAGCATTAAGCAGGA+AGG - chr8_4:50899471-50899490 None:intergenic 40.0%
! TTGTTCCTTTTTGCATGCTG+AGG - chr8_4:50899498-50899517 None:intergenic 40.0%
! CAGTTGGCTCCAACTAAAAT+CGG + chr8_4:50900161-50900180 Msa1331380:intron 40.0%
!!! TCCTAATTTTTTGGCTGGTC+AGG + chr8_4:50900199-50900218 Msa1331380:intron 40.0%
TCCTGACCAGCCAAAAAATT+AGG - chr8_4:50900203-50900222 None:intergenic 40.0%
!!! TAGGTTATTTTTTGGGGAGG+GGG - chr8_4:50900363-50900382 None:intergenic 40.0%
!!! GTAGGTTATTTTTTGGGGAG+GGG - chr8_4:50900364-50900383 None:intergenic 40.0%
!!! CTGTAGGTTATTTTTTGGGG+AGG - chr8_4:50900366-50900385 None:intergenic 40.0%
CTCCCCAAAAAATAACCTAC+AGG + chr8_4:50900364-50900383 Msa1331380:intron 40.0%
GCTTTGATAAGTATGCCTGT+AGG - chr8_4:50900382-50900401 None:intergenic 40.0%
TACATGCTGAGAAGCAAACA+AGG - chr8_4:50900404-50900423 None:intergenic 40.0%
AGCAATGATCCCTTAACCTT+TGG - chr8_4:50900555-50900574 None:intergenic 40.0%
TGCAATCCCGCATTTATATG+TGG - chr8_4:50900724-50900743 None:intergenic 40.0%
! TGAGTGTTGCAATGGCAACA+AGG + chr8_4:50897596-50897615 Msa1331380:CDS 45.0%
GCAAAAGCTGCGTAACTGAA+TGG - chr8_4:50897640-50897659 None:intergenic 45.0%
TGAGAACGGAGGAGAAAAGA+AGG - chr8_4:50897688-50897707 None:intergenic 45.0%
GAATTGTGGAACCTTGTTGG+TGG - chr8_4:50897785-50897804 None:intergenic 45.0%
ACGGAATTGTGGAACCTTGT+TGG - chr8_4:50897788-50897807 None:intergenic 45.0%
CGACGACTTTGAGCTTCTTA+CGG - chr8_4:50897807-50897826 None:intergenic 45.0%
GACGATCAATTCGATTCCCT+CGG + chr8_4:50897835-50897854 Msa1331380:CDS 45.0%
GCAATGTGTATTGGACACTG+AGG + chr8_4:50898104-50898123 Msa1331380:CDS 45.0%
GTATTGGACACTGAGGTTGA+AGG + chr8_4:50898111-50898130 Msa1331380:CDS 45.0%
!! GCGGGCTTATATTTTGAGTG+TGG - chr8_4:50898369-50898388 None:intergenic 45.0%
TATGGAAAGAACAAGTGCGC+GGG - chr8_4:50898387-50898406 None:intergenic 45.0%
GTTGACGGAGTCGGAAAAAA+AGG + chr8_4:50898583-50898602 Msa1331380:intron 45.0%
GCGACAAGTAAAGCTCTGTT+TGG - chr8_4:50898948-50898967 None:intergenic 45.0%
! CAAAAGCACATCTTCGTGCA+AGG + chr8_4:50899400-50899419 Msa1331380:CDS 45.0%
CATTGCCTCAGCATGCAAAA+AGG + chr8_4:50899490-50899509 Msa1331380:intron 45.0%
TCCTCTTCTGGTAACTAGCT+GGG - chr8_4:50899955-50899974 None:intergenic 45.0%
AAATGACGTCCTGCTTAGCT+TGG + chr8_4:50900312-50900331 Msa1331380:intron 45.0%
AATGACGTCCTGCTTAGCTT+GGG + chr8_4:50900313-50900332 Msa1331380:intron 45.0%
TGAAATAGCCCAAGCTAAGC+AGG - chr8_4:50900324-50900343 None:intergenic 45.0%
GGATCATTGCTACATCCTGA+AGG + chr8_4:50900564-50900583 Msa1331380:intron 45.0%
TCATTGCTACATCCTGAAGG+TGG + chr8_4:50900567-50900586 Msa1331380:intron 45.0%
CTACATCCTGAAGGTGGAAA+AGG + chr8_4:50900573-50900592 Msa1331380:intron 45.0%
ATCCTGAAGGTGGAAAAGGA+GGG + chr8_4:50900577-50900596 Msa1331380:intron 45.0%
ACTGCAACATCAGTTCAAGC+TGG - chr8_4:50900666-50900685 None:intergenic 45.0%
AGCTTGAACTGATGTTGCAG+TGG + chr8_4:50900665-50900684 Msa1331380:intron 45.0%
!! TCTGGCAGTTTATGGTGGAT+TGG + chr8_4:50900690-50900709 Msa1331380:CDS 45.0%
AAGGAAGAGGATGAGAACGG+AGG - chr8_4:50897699-50897718 None:intergenic 50.0%
GAGAAGGGAGAAGAAGGAAG+AGG - chr8_4:50897712-50897731 None:intergenic 50.0%
GAGTAGCGGTGCAGAAGATA+CGG - chr8_4:50897750-50897769 None:intergenic 50.0%
GAATCGGGCTTGATTACCAC+TGG + chr8_4:50899029-50899048 Msa1331380:CDS 50.0%
TTACCACTGGTGCATCTGTG+TGG + chr8_4:50899042-50899061 Msa1331380:CDS 50.0%
TACCACTGGTGCATCTGTGT+GGG + chr8_4:50899043-50899062 Msa1331380:CDS 50.0%
GGAGTTGTGGTTAAGAGCCA+AGG + chr8_4:50899071-50899090 Msa1331380:CDS 50.0%
TGGTAACTAGCTGGGTGGTT+TGG - chr8_4:50899947-50899966 None:intergenic 50.0%
TCTTCTGGTAACTAGCTGGG+TGG - chr8_4:50899952-50899971 None:intergenic 50.0%
ACCCAGCTAGTTACCAGAAG+AGG + chr8_4:50899951-50899970 Msa1331380:intron 50.0%
GTCCTCTTCTGGTAACTAGC+TGG - chr8_4:50899956-50899975 None:intergenic 50.0%
CAACTGTCACTCTGTCGAAG+AGG - chr8_4:50900147-50900166 None:intergenic 50.0%
CTCTTCGACAGAGTGACAGT+TGG + chr8_4:50900145-50900164 Msa1331380:intron 50.0%
! AAGGATAGAGGGAAGGCATG+CGG - chr8_4:50900262-50900281 None:intergenic 50.0%
GCTAAGCAGGACGTCATTTC+AGG - chr8_4:50900311-50900330 None:intergenic 50.0%
CATCCTGAAGGTGGAAAAGG+AGG + chr8_4:50900576-50900595 Msa1331380:intron 50.0%
TGAAGGTGGAAAAGGAGGGT+GGG + chr8_4:50900581-50900600 Msa1331380:intron 50.0%
ACTGATGTTGCAGTGGTGTC+TGG + chr8_4:50900672-50900691 Msa1331380:intron 50.0%
CAGTGGTGTCTGGCAGTTTA+TGG + chr8_4:50900682-50900701 Msa1331380:intron 50.0%
TGGTGTCTGGCAGTTTATGG+TGG + chr8_4:50900685-50900704 Msa1331380:CDS 50.0%
TGCAACCTATAGTGCCGCAA+TGG + chr8_4:50900740-50900759 Msa1331380:CDS 50.0%
GAGGAGGAGAAGGGAGAAGA+AGG - chr8_4:50897718-50897737 None:intergenic 55.0%
TAGCGGTGCAGAAGATACGG+CGG - chr8_4:50897747-50897766 None:intergenic 55.0%
!! TGGAACCTTGTTGGTGGCGT+CGG - chr8_4:50897779-50897798 None:intergenic 55.0%
!! AAGGACGAGAGTGTTGCCGA+GGG - chr8_4:50897854-50897873 None:intergenic 55.0%
GGCAACACTCTCGTCCTTCA+GGG + chr8_4:50897856-50897875 Msa1331380:CDS 55.0%
ACACTCTCGTCCTTCAGGGA+TGG + chr8_4:50897860-50897879 Msa1331380:CDS 55.0%
CACTCTCGTCCTTCAGGGAT+GGG + chr8_4:50897861-50897880 Msa1331380:CDS 55.0%
GAGTACGAACCCATCCCTGA+AGG - chr8_4:50897873-50897892 None:intergenic 55.0%
! GAGTAGCGTCACTTTCCTCG+AGG + chr8_4:50897903-50897922 Msa1331380:CDS 55.0%
TGTGTGGGTGCAAGGAGTTG+TGG + chr8_4:50899058-50899077 Msa1331380:CDS 55.0%
! GGAGCACTCTCCCTGTTGTA+TGG + chr8_4:50900220-50900239 Msa1331380:intron 55.0%
! AGGATAGAGGGAAGGCATGC+GGG - chr8_4:50900261-50900280 None:intergenic 55.0%
! CACCCTCCTTTTCCACCTTC+AGG - chr8_4:50900582-50900601 None:intergenic 55.0%
CTGAAGGTGGAAAAGGAGGG+TGG + chr8_4:50900580-50900599 Msa1331380:intron 55.0%
!! CCTTGTTGGTGGCGTCGGAA+GGG - chr8_4:50897774-50897793 None:intergenic 60.0%
!! ACCTTGTTGGTGGCGTCGGA+AGG - chr8_4:50897775-50897794 None:intergenic 60.0%
!! GAAGGACGAGAGTGTTGCCG+AGG - chr8_4:50897855-50897874 None:intergenic 60.0%
CGGCAACACTCTCGTCCTTC+AGG + chr8_4:50897855-50897874 Msa1331380:CDS 60.0%
CACCCACACAGATGCACCAG+TGG - chr8_4:50899048-50899067 None:intergenic 60.0%
GGTGCATCTGTGTGGGTGCA+AGG + chr8_4:50899050-50899069 Msa1331380:CDS 60.0%
! GATAGAGGGAAGGCATGCGG+GGG - chr8_4:50900259-50900278 None:intergenic 60.0%
! GGATAGAGGGAAGGCATGCG+GGG - chr8_4:50900260-50900279 None:intergenic 60.0%
GGAAAAGGAGGGTGGGAGCA+AGG + chr8_4:50900588-50900607 Msa1331380:intron 60.0%
GCAGAAGATACGGCGGCGGT+GGG - chr8_4:50897740-50897759 None:intergenic 65.0%
TGCAGAAGATACGGCGGCGG+TGG - chr8_4:50897741-50897760 None:intergenic 65.0%
CGGTGCAGAAGATACGGCGG+CGG - chr8_4:50897744-50897763 None:intergenic 65.0%
! GGCGTCGGAAGGGAGAGTAG+CGG - chr8_4:50897764-50897783 None:intergenic 65.0%
CCCTTCCGACGCCACCAACA+AGG + chr8_4:50897771-50897790 Msa1331380:CDS 65.0%
CGGCGGTGGGAGGAGGAGAA+GGG - chr8_4:50897727-50897746 None:intergenic 70.0%
GAAGATACGGCGGCGGTGGG+AGG - chr8_4:50897737-50897756 None:intergenic 70.0%
GCGGCGGTGGGAGGAGGAGA+AGG - chr8_4:50897728-50897747 None:intergenic 75.0%
GATACGGCGGCGGTGGGAGG+AGG - chr8_4:50897734-50897753 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 50897552 50900765 50897552 ID=Msa1331380;Name=Msa1331380
chr8_4 mRNA 50897552 50900765 50897552 ID=Msa1331380-mRNA-1;Parent=Msa1331380;Name=Msa1331380-mRNA-1;_AED=0.06;_eAED=0.06;_QI=43|0.75|0.6|0.8|1|1|5|0|231
chr8_4 exon 50897552 50897924 50897552 ID=Msa1331380-mRNA-1:exon:14944;Parent=Msa1331380-mRNA-1
chr8_4 exon 50898075 50898143 50898075 ID=Msa1331380-mRNA-1:exon:14945;Parent=Msa1331380-mRNA-1
chr8_4 exon 50899026 50899136 50899026 ID=Msa1331380-mRNA-1:exon:14946;Parent=Msa1331380-mRNA-1
chr8_4 exon 50899336 50899440 50899336 ID=Msa1331380-mRNA-1:exon:14947;Parent=Msa1331380-mRNA-1
chr8_4 exon 50900685 50900765 50900685 ID=Msa1331380-mRNA-1:exon:14948;Parent=Msa1331380-mRNA-1
chr8_4 five_prime_UTR 50897552 50897594 50897552 ID=Msa1331380-mRNA-1:five_prime_utr;Parent=Msa1331380-mRNA-1
chr8_4 CDS 50897595 50897924 50897595 ID=Msa1331380-mRNA-1:cds;Parent=Msa1331380-mRNA-1
chr8_4 CDS 50898075 50898143 50898075 ID=Msa1331380-mRNA-1:cds;Parent=Msa1331380-mRNA-1
chr8_4 CDS 50899026 50899136 50899026 ID=Msa1331380-mRNA-1:cds;Parent=Msa1331380-mRNA-1
chr8_4 CDS 50899336 50899440 50899336 ID=Msa1331380-mRNA-1:cds;Parent=Msa1331380-mRNA-1
chr8_4 CDS 50900685 50900765 50900685 ID=Msa1331380-mRNA-1:cds;Parent=Msa1331380-mRNA-1
Gene Sequence

>Msa1331380

ATGAGTGTTGCAATGGCAACAAGGCCGTTACGCATAGTTAAACCATTCAGTTACGCAGCTTTTGCTTATCTCAACGCTTCATCACTTAAACCTTCTTTTCTCCTCCGTTCTCATCCTCTTCCTTCTTCTCCCTTCTCCTCCTCCCACCGCCGCCGTATCTTCTGCACCGCTACTCTCCCTTCCGACGCCACCAACAAGGTTCCACAATTCCGTAAGAAGCTCAAAGTCGTCGATGTAAAAGACGATCAATTCGATTCCCTCGGCAACACTCTCGTCCTTCAGGGATGGGTTCGTACTCTTCGTCTTCAGAGTAGCGTCACTTTCCTCGAGATTAATGATGGTTCGTGTCTTTCTAATATGCAATGTGTATTGGACACTGAGGTTGAAGGTTATGATCAGGTAGAATCGGGCTTGATTACCACTGGTGCATCTGTGTGGGTGCAAGGAGTTGTGGTTAAGAGCCAAGGAACAAAACAGAAAGTCGAATTGAAGCTCAACAAAATAGTACAGGTTGGCAAGAGTGATCCATCCTTTCCTATCCAAAAGAAAAGAGTCAGCAGAGAATTTTTAAGAACAAAAGCACATCTTCGTGCAAGGACAAATACTTTTGGTGCTTGGTGTCTGGCAGTTTATGGTGGATTGGCTAAAATTCCACATATAAATGCGGGATTGCAACCTATAGTGCCGCAATGGTAG

Protein sequence

>Msa1331380

MSVAMATRPLRIVKPFSYAAFAYLNASSLKPSFLLRSHPLPSSPFSSSHRRRIFCTATLPSDATNKVPQFRKKLKVVDVKDDQFDSLGNTLVLQGWVRTLRLQSSVTFLEINDGSCLSNMQCVLDTEVEGYDQVESGLITTGASVWVQGVVVKSQGTKQKVELKLNKIVQVGKSDPSFPIQKKRVSREFLRTKAHLRARTNTFGAWCLAVYGGLAKIPHINAGLQPIVPQW*