AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0520520


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0520520 MtrunA17_Chr3g0136281 97.835 231 4 1 1 231 1 230 2.73e-163 450
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0520520 AT2G26340.1 56.306 222 91 4 16 231 32 253 1.32e-69 214
Msa0520520 AT2G26340.2 55.660 212 86 4 25 231 42 250 7.15e-65 202

Find 78 sgRNAs with CRISPR-Local

Find 262 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTATTTCCATGTTGTTTA+AGG 0.063769 3_4:-73058827 Msa0520520:three_prime_UTR
CAGTTCCAGATCAAGGATTT+AGG 0.258642 3_4:-73061203 Msa0520520:intron
TAGAGAAACATATTAACTTT+TGG 0.282146 3_4:-73058889 Msa0520520:three_prime_UTR
GAGATCGGCAGAGGGAAAAT+TGG 0.292643 3_4:+73060778 None:intergenic
TTCCATGTTGTTTAAGGACT+TGG 0.331753 3_4:-73058821 Msa0520520:three_prime_UTR
TCTCCGTTTCCACGTCTTCC+CGG 0.342386 3_4:+73059212 None:intergenic
ATCACCTGTCCAGAGCAATA+AGG 0.367512 3_4:+73059786 None:intergenic
TGCCGATCTCTACTTCGCTC+TGG 0.368041 3_4:-73060765 Msa0520520:CDS
AGATCGGCAGAGGGAAAATT+GGG 0.369482 3_4:+73060779 None:intergenic
TAAGAGTATTGTGTGGATAA+TGG 0.386551 3_4:-73062919 Msa0520520:exon
TACTGCTGAAGGAAGTATTA+TGG 0.395912 3_4:-73062606 Msa0520520:CDS
TCACCTGTCCAGAGCAATAA+GGG 0.422481 3_4:+73059787 None:intergenic
CAGTTCTGCCCTTATTGCTC+TGG 0.425958 3_4:-73059795 Msa0520520:CDS
ATTGATTTAACGGAGGCATC+AGG 0.434244 3_4:+73059830 None:intergenic
AGACGTGGAAACGGAGAACT+TGG 0.443745 3_4:-73059206 Msa0520520:CDS
ACCGTCAGACGTGTTAAGTA+AGG 0.459060 3_4:-73059263 Msa0520520:CDS
GCCGATCTCTACTTCGCTCT+GGG 0.469537 3_4:-73060764 Msa0520520:CDS
GGATAAACACCATGCCAACT+TGG 0.470426 3_4:-73059005 Msa0520520:three_prime_UTR
CTGACGGTACCGTTTGTAAG+AGG 0.470661 3_4:+73059278 None:intergenic
TAGCTGATTCATACTTGGAC+CGG 0.479874 3_4:-73059231 Msa0520520:CDS
GGTTATAGCTGATTCATACT+TGG 0.482554 3_4:-73059236 Msa0520520:CDS
CTGCCCTTATTGCTCTGGAC+AGG 0.483084 3_4:-73059790 Msa0520520:intron
CATTACCTAAATCCTTGATC+TGG 0.484328 3_4:+73061198 None:intergenic
CATGGAAATAGAAGTTCTAA+AGG 0.488268 3_4:+73058837 None:intergenic
TTTGTATGTATTAAACATGA+AGG 0.490256 3_4:-73062950 Msa0520520:five_prime_UTR
GTGGGAGAGAACAAGAGAGA+TGG 0.492502 3_4:+73062764 None:intergenic
ATTCTGTTTCTGAAGGTCAC+TGG 0.496213 3_4:-73059894 Msa0520520:intron
TTATGGACAAATATGTTAAG+AGG 0.496243 3_4:-73062589 Msa0520520:intron
GAAACGGAGAACTTGGACCC+TGG 0.503257 3_4:-73059199 Msa0520520:CDS
TGGTTTCAGCCTCTTACAAA+CGG 0.513105 3_4:-73059287 Msa0520520:intron
CACGCAGAAGCAAGGAATCA+AGG 0.516697 3_4:+73059867 None:intergenic
GGACCGGGAAGACGTGGAAA+CGG 0.519125 3_4:-73059215 Msa0520520:CDS
AGCGAAGTAGAGATCGGCAG+AGG 0.521610 3_4:+73060769 None:intergenic
GTTAGGAAAGAGAAGGAAGT+GGG 0.523483 3_4:+73062746 None:intergenic
CCTCACACAGTTCCAGATCA+AGG 0.524145 3_4:-73061210 Msa0520520:CDS
GATTCTAATTGCTTTAAACC+AGG 0.530046 3_4:+73059181 None:intergenic
CGACTTGAACAACAATGCAA+TGG 0.531568 3_4:+73062849 None:intergenic
CATTGCATTGTTGTTCAAGT+CGG 0.538107 3_4:-73062848 Msa0520520:CDS
CCCTTACTTAACACGTCTGA+CGG 0.543771 3_4:+73059262 None:intergenic
TTGATATAAGTCCACCAAGT+TGG 0.544381 3_4:+73058991 None:intergenic
GGTTAGGAAAGAGAAGGAAG+TGG 0.546811 3_4:+73062745 None:intergenic
TATGCTTCTGACAGTGGCAA+TGG 0.552161 3_4:-73060055 Msa0520520:CDS
ATTCTAATTGCTTTAAACCA+GGG 0.552324 3_4:+73059182 None:intergenic
GCTGTACTTGCTAACATGCG+CGG 0.553235 3_4:+73062875 None:intergenic
TAAACACCATGCCAACTTGG+TGG 0.553430 3_4:-73059002 Msa0520520:three_prime_UTR
CTGTACTTGCTAACATGCGC+GGG 0.554195 3_4:+73062876 None:intergenic
GCATTGTTGTTCAAGTCGGA+AGG 0.556474 3_4:-73062844 Msa0520520:CDS
TGTCGCCATCACGATCATCA+TGG 0.556725 3_4:-73062809 Msa0520520:CDS
ATGTTCCTAACTGCGTGAAC+CGG 0.556938 3_4:+73058748 None:intergenic
GAAGAGATAAGAGTATTGTG+TGG 0.564905 3_4:-73062926 Msa0520520:five_prime_UTR
TGCCTCCGTTAAATCAATGA+AGG 0.566338 3_4:-73059825 Msa0520520:CDS
TCTTGAAGCACGCAGAAGCA+AGG 0.570877 3_4:+73059859 None:intergenic
GATCATCATGGAAGGAAGGC+AGG 0.575507 3_4:-73062797 Msa0520520:CDS
GCCCAGAGCGAAGTAGAGAT+CGG 0.581943 3_4:+73060763 None:intergenic
AGCTGATTCATACTTGGACC+GGG 0.583181 3_4:-73059230 Msa0520520:CDS
AGACGTGTTAAGTAAGGGAA+AGG 0.583469 3_4:-73059257 Msa0520520:CDS
GTTACAGGTGCTACTGCTGA+AGG 0.587152 3_4:-73062617 Msa0520520:intron
AGATACGGTTAGGAAAGAGA+AGG 0.593425 3_4:+73062739 None:intergenic
CCTTGATCTGGAACTGTGTG+AGG 0.597626 3_4:+73061210 None:intergenic
TTCCAAGTCCTTAAACAACA+TGG 0.601597 3_4:+73058819 None:intergenic
CTTAACAACAGTTATTACAC+CGG 0.603864 3_4:-73058767 Msa0520520:three_prime_UTR
GCGAAGTAGAGATCGGCAGA+GGG 0.604621 3_4:+73060770 None:intergenic
TCACGATCATCATGGAAGGA+AGG 0.609369 3_4:-73062801 Msa0520520:CDS
ATACTTGGACCGGGAAGACG+TGG 0.614514 3_4:-73059221 Msa0520520:CDS
TCCTTCCATGATGATCGTGA+TGG 0.616802 3_4:+73062804 None:intergenic
ATAAGTCCACCAAGTTGGCA+TGG 0.618659 3_4:+73058996 None:intergenic
CCGTCAGACGTGTTAAGTAA+GGG 0.623574 3_4:-73059262 Msa0520520:CDS
GCCATCACGATCATCATGGA+AGG 0.625337 3_4:-73062805 Msa0520520:CDS
TTTACACGAAGAGATGCTGC+AGG 0.626649 3_4:+73060741 None:intergenic
TGCCTTCATTGATTTAACGG+AGG 0.631585 3_4:+73059823 None:intergenic
ATGGAAGGAAGGCAGGCGCA+TGG 0.631810 3_4:-73062790 Msa0520520:CDS
GGATGCAGATGCAAATGCAA+AGG 0.632544 3_4:+73059037 None:intergenic
AACTGTGTGAGGATTACAGC+TGG 0.642570 3_4:+73061221 None:intergenic
GCGCAATATGCTTCTGACAG+TGG 0.644065 3_4:-73060061 Msa0520520:CDS
CTGTTTCTGAAGGTCACTGG+AGG 0.644931 3_4:-73059891 Msa0520520:intron
GCTGGTACGTAAGTCTCCAG+AGG 0.686740 3_4:+73061239 None:intergenic
ACAATGTTGATGATTGTCTG+AGG 0.713768 3_4:-73060018 Msa0520520:intron
GATCGGCAGAGGGAAAATTG+GGG 0.716033 3_4:+73060780 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGATTTAATTAAACTTTA+GGG + chr3_4:73059460-73059479 None:intergenic 10.0%
!!! TATTTTCATAATAATTTTTG+CGG + chr3_4:73061734-73061753 None:intergenic 10.0%
!!! CATTTTTTTTTGCTTAAATT+TGG - chr3_4:73059150-73059169 Msa0520520:three_prime_UTR 15.0%
!!! GTTTGATTTAATTAAACTTT+AGG + chr3_4:73059461-73059480 None:intergenic 15.0%
!! TTATTTGAATGATACTTTAT+TGG - chr3_4:73059578-73059597 Msa0520520:intron 15.0%
!! ATGATACAATTAGTATTAAA+CGG - chr3_4:73059954-73059973 Msa0520520:intron 15.0%
!!! ATTTTCATAATAATTTTTGC+GGG + chr3_4:73061733-73061752 None:intergenic 15.0%
!!! AAATGTTTTCACAAAATAAA+CGG + chr3_4:73062058-73062077 None:intergenic 15.0%
!! AACAATAAAAATGTCAATAA+TGG + chr3_4:73062215-73062234 None:intergenic 15.0%
!!! TTATATCAATGTTTTTTTTC+AGG - chr3_4:73062733-73062752 Msa0520520:intron 15.0%
!! TTTGTATGTATTAAACATGA+AGG - chr3_4:73058760-73058779 Msa0520520:three_prime_UTR 20.0%
!! AAATGATTAAAAAGAGAAAG+AGG + chr3_4:73058997-73059016 None:intergenic 20.0%
!!! AATCATTTTTTTGCTGTTTA+TGG - chr3_4:73059009-73059028 Msa0520520:three_prime_UTR 20.0%
!! CATTCAAATAATGTCTAAAA+TGG + chr3_4:73059569-73059588 None:intergenic 20.0%
!!! AATAACATTGCATTCTAAAA+GGG + chr3_4:73059635-73059654 None:intergenic 20.0%
!! CTCAAAAAAAATTACGAAAT+AGG + chr3_4:73059665-73059684 None:intergenic 20.0%
!!! CTATTTCGTAATTTTTTTTG+AGG - chr3_4:73059663-73059682 Msa0520520:intron 20.0%
!!! ACATATAAGCTATACTTTTT+CGG - chr3_4:73059908-73059927 Msa0520520:intron 20.0%
!! TTATCCATATCAAAAATACT+GGG + chr3_4:73060100-73060119 None:intergenic 20.0%
!! ATTATCCATATCAAAAATAC+TGG + chr3_4:73060101-73060120 None:intergenic 20.0%
!!! TTGCTTTTTATAATTTGTAC+TGG - chr3_4:73060345-73060364 Msa0520520:intron 20.0%
!!! TGCTTTTTATAATTTGTACT+GGG - chr3_4:73060346-73060365 Msa0520520:intron 20.0%
!! TTACGTATTTATATCATACT+TGG - chr3_4:73060605-73060624 Msa0520520:intron 20.0%
!! TATTACAGAAAAAACTTTAG+AGG - chr3_4:73060899-73060918 Msa0520520:intron 20.0%
!! ATTACAGAAAAAACTTTAGA+GGG - chr3_4:73060900-73060919 Msa0520520:intron 20.0%
!! AAGTGTATATATACTTAAGT+CGG - chr3_4:73061199-73061218 Msa0520520:intron 20.0%
!! CTTCTTCAAAAAAAAACAAT+GGG + chr3_4:73061386-73061405 None:intergenic 20.0%
!! ACAAATATCATATCAACAAT+GGG + chr3_4:73061526-73061545 None:intergenic 20.0%
!! AACAAATATCATATCAACAA+TGG + chr3_4:73061527-73061546 None:intergenic 20.0%
!! AAAGTAAATGATGATAAACA+TGG + chr3_4:73061571-73061590 None:intergenic 20.0%
!!! GTTTTTCATAATCATAAAAC+TGG + chr3_4:73061778-73061797 None:intergenic 20.0%
!! CTTATTATGTACAAGAAAAA+GGG + chr3_4:73061974-73061993 None:intergenic 20.0%
!!! AATGTTTTCACAAAATAAAC+GGG + chr3_4:73062057-73062076 None:intergenic 20.0%
!!! GAACAATTGTTTACATTTTT+TGG + chr3_4:73062239-73062258 None:intergenic 20.0%
!!! AAAATGTTTTCGCAAAATAA+TGG - chr3_4:73062322-73062341 Msa0520520:intron 20.0%
!!! AAATGTTTTCGCAAAATAAT+GGG - chr3_4:73062323-73062342 Msa0520520:intron 20.0%
!! ATATTAAGAATATCATCAGA+TGG + chr3_4:73062398-73062417 None:intergenic 20.0%
!!! TGATATTCTTAATATGCTTT+TGG - chr3_4:73062403-73062422 Msa0520520:intron 20.0%
!!! TAGAGAAACATATTAACTTT+TGG - chr3_4:73062821-73062840 Msa0520520:CDS 20.0%
!! TTTTCTTTCTTCTATGTTAC+AGG - chr3_4:73059078-73059097 Msa0520520:three_prime_UTR 25.0%
! TTATGGACAAATATGTTAAG+AGG - chr3_4:73059121-73059140 Msa0520520:three_prime_UTR 25.0%
! AAATCACAAATCCAAAACAA+GGG + chr3_4:73059200-73059219 None:intergenic 25.0%
!! GAATCCAATTTGTTTAATCA+AGG - chr3_4:73059252-73059271 Msa0520520:CDS 25.0%
! TAAGCCTTGATTAAACAAAT+TGG + chr3_4:73059259-73059278 None:intergenic 25.0%
!!! AATTAAACTTTAGGGCTATT+TGG + chr3_4:73059452-73059471 None:intergenic 25.0%
!! GGAAAACTAAGATAAGTTTT+TGG + chr3_4:73059499-73059518 None:intergenic 25.0%
!! TCAAATAATGTCTAAAATGG+AGG + chr3_4:73059566-73059585 None:intergenic 25.0%
! GAATAACATTGCATTCTAAA+AGG + chr3_4:73059636-73059655 None:intergenic 25.0%
! GATAAAGTGCAAACATATTA+GGG - chr3_4:73059700-73059719 Msa0520520:intron 25.0%
! TAATAACATGACAAAGAACA+AGG + chr3_4:73059728-73059747 None:intergenic 25.0%
! TTCTCAAAGAATGAACAAAA+AGG + chr3_4:73059771-73059790 None:intergenic 25.0%
! AACCAAGACTTATTTCAATT+AGG - chr3_4:73060009-73060028 Msa0520520:intron 25.0%
! ACCAAGACTTATTTCAATTA+GGG - chr3_4:73060010-73060029 Msa0520520:intron 25.0%
!!! ATTTCCCAGTATTTTTGATA+TGG - chr3_4:73060093-73060112 Msa0520520:intron 25.0%
!!! TTTTTGTTATGATCACAAGT+AGG - chr3_4:73060139-73060158 Msa0520520:intron 25.0%
! AGCTACTCTAATTTAATTCA+AGG + chr3_4:73060318-73060337 None:intergenic 25.0%
! GAATCAGAATTATCATTCTT+TGG + chr3_4:73060415-73060434 None:intergenic 25.0%
!! TATTTGTAAACCTCTGATTT+TGG - chr3_4:73060580-73060599 Msa0520520:intron 25.0%
!! TATATCATACTTGGTTCTTA+TGG - chr3_4:73060614-73060633 Msa0520520:intron 25.0%
! TCTTCTTTCATTGGTAAATT+TGG - chr3_4:73060704-73060723 Msa0520520:intron 25.0%
! TTCTGTAATAGTAGAAAGAA+AGG + chr3_4:73060889-73060908 None:intergenic 25.0%
!! GAAAAACTTTTAACATCCAA+AGG + chr3_4:73061061-73061080 None:intergenic 25.0%
!!! TCTTTTATTTTTCCTTCCAT+GGG + chr3_4:73061261-73061280 None:intergenic 25.0%
! GCTTCTTCAAAAAAAAACAA+TGG + chr3_4:73061387-73061406 None:intergenic 25.0%
!!! TTTTGCCTTCATTGATTTAA+CGG + chr3_4:73061893-73061912 None:intergenic 25.0%
! CCTTATTATGTACAAGAAAA+AGG + chr3_4:73061975-73061994 None:intergenic 25.0%
!! CCTTTTTCTTGTACATAATA+AGG - chr3_4:73061972-73061991 Msa0520520:intron 25.0%
! TCTTGTACATAATAAGGATT+TGG - chr3_4:73061978-73061997 Msa0520520:intron 25.0%
!! ATTCTAATTGCTTTAAACCA+GGG + chr3_4:73062531-73062550 None:intergenic 25.0%
!!! TATCAATGTTTTTTTTCAGG+AGG - chr3_4:73062736-73062755 Msa0520520:intron 25.0%
!! TTCTATTTCCATGTTGTTTA+AGG - chr3_4:73062883-73062902 Msa0520520:CDS 25.0%
!! TAAGAGTATTGTGTGGATAA+TGG - chr3_4:73058791-73058810 Msa0520520:three_prime_UTR 30.0%
AAAAAGAGAAAGAGGAGATA+CGG + chr3_4:73058989-73059008 None:intergenic 30.0%
!! TTTTTCATACACCCTTGTTT+TGG - chr3_4:73059186-73059205 Msa0520520:CDS 30.0%
CAAATCACAAATCCAAAACA+AGG + chr3_4:73059201-73059220 None:intergenic 30.0%
AACAAATTGGATTCCAAACA+GGG + chr3_4:73059246-73059265 None:intergenic 30.0%
AAACAAATTGGATTCCAAAC+AGG + chr3_4:73059247-73059266 None:intergenic 30.0%
! GCTATTATTATTAGCTCTTC+CGG - chr3_4:73059372-73059391 Msa0520520:intron 30.0%
GGATAAAGTGCAAACATATT+AGG - chr3_4:73059699-73059718 Msa0520520:intron 30.0%
AAAAAGACATGCATGATCAT+AGG - chr3_4:73059798-73059817 Msa0520520:CDS 30.0%
!! TGTTGCATTTTGACATTAGT+TGG - chr3_4:73060047-73060066 Msa0520520:CDS 30.0%
!! GTTGCATTTTGACATTAGTT+GGG - chr3_4:73060048-73060067 Msa0520520:CDS 30.0%
!! TTGCATTTTGACATTAGTTG+GGG - chr3_4:73060049-73060068 Msa0520520:CDS 30.0%
CTAAAGATATGATACAACGT+AGG + chr3_4:73060294-73060313 None:intergenic 30.0%
TCAGAATTATCATTCTTTGG+AGG + chr3_4:73060412-73060431 None:intergenic 30.0%
ATCAGAGGTTTACAAATATC+TGG + chr3_4:73060578-73060597 None:intergenic 30.0%
AATATTCGAGCAGTAAGTAA+AGG - chr3_4:73060990-73061009 Msa0520520:intron 30.0%
AAGAAGAACTCAGAAGTTAA+AGG + chr3_4:73061019-73061038 None:intergenic 30.0%
CAAAAAAATGAATTCCCTGT+TGG - chr3_4:73061098-73061117 Msa0520520:intron 30.0%
!!! CTCTTTTATTTTTCCTTCCA+TGG + chr3_4:73061262-73061281 None:intergenic 30.0%
!! TTTCTGAAATCTGCATGATA+TGG + chr3_4:73061308-73061327 None:intergenic 30.0%
! TCTATTGTTCTATGCTGTTT+GGG + chr3_4:73061334-73061353 None:intergenic 30.0%
ATCTATTGTTCTATGCTGTT+TGG + chr3_4:73061335-73061354 None:intergenic 30.0%
AGAAACAGAATTCTTCAGTT+GGG + chr3_4:73061807-73061826 None:intergenic 30.0%
ATTATGTACAAGAAAAAGGG+AGG + chr3_4:73061971-73061990 None:intergenic 30.0%
! TTTGAAACGAATCATTGTGA+TGG - chr3_4:73062137-73062156 Msa0520520:intron 30.0%
! GATTCTAATTGCTTTAAACC+AGG + chr3_4:73062532-73062551 None:intergenic 30.0%
TGGTGTTTATCCAAAAAATG+AGG + chr3_4:73062697-73062716 None:intergenic 30.0%
!!! GTTTTTTTTCAGGAGGAATA+TGG - chr3_4:73062743-73062762 Msa0520520:intron 30.0%
! CATGGAAATAGAAGTTCTAA+AGG + chr3_4:73062876-73062895 None:intergenic 30.0%
CTTAACAACAGTTATTACAC+CGG - chr3_4:73062943-73062962 Msa0520520:five_prime_UTR 30.0%
!! GAAGAGATAAGAGTATTGTG+TGG - chr3_4:73058784-73058803 Msa0520520:three_prime_UTR 35.0%
! CATTGCATTGTTGTTCAAGT+CGG - chr3_4:73058862-73058881 Msa0520520:three_prime_UTR 35.0%
!! TACTGCTGAAGGAAGTATTA+TGG - chr3_4:73059104-73059123 Msa0520520:three_prime_UTR 35.0%
GATTCCAAACAGGGAATAAT+GGG + chr3_4:73059237-73059256 None:intergenic 35.0%
CTTAAGTTTATCTACTTGCC+CGG + chr3_4:73059420-73059439 None:intergenic 35.0%
GTACTTGCCCATTAAGAATT+GGG - chr3_4:73059538-73059557 Msa0520520:intron 35.0%
AAAGTACGTCTACGCTATAT+AGG - chr3_4:73059603-73059622 Msa0520520:intron 35.0%
! AAGGAGTATGTACTTCGATT+CGG + chr3_4:73059752-73059771 None:intergenic 35.0%
CATGCATGATCATAGGATAT+TGG - chr3_4:73059805-73059824 Msa0520520:CDS 35.0%
CATGATCATAGGATATTGGT+GGG - chr3_4:73059809-73059828 Msa0520520:CDS 35.0%
ATGATCATAGGATATTGGTG+GGG - chr3_4:73059810-73059829 Msa0520520:CDS 35.0%
GTACATGATTCGTTTGATGA+TGG - chr3_4:73059835-73059854 Msa0520520:CDS 35.0%
!! TTTTTCGGATGATGAGAACA+CGG - chr3_4:73059923-73059942 Msa0520520:intron 35.0%
GCCCTAATTGAAATAAGTCT+TGG + chr3_4:73060014-73060033 None:intergenic 35.0%
CATTACCTAAATCCTTGATC+TGG + chr3_4:73060515-73060534 None:intergenic 35.0%
ATACGTAACACCAAAATCAG+AGG + chr3_4:73060593-73060612 None:intergenic 35.0%
TGCATTCGTTTATCAGAATG+AGG + chr3_4:73060730-73060749 None:intergenic 35.0%
! TTGGACTGACTCAATCAAAA+GGG + chr3_4:73061137-73061156 None:intergenic 35.0%
! TTTGGACTGACTCAATCAAA+AGG + chr3_4:73061138-73061157 None:intergenic 35.0%
AATGAAGTCTCAGATTGCTT+TGG + chr3_4:73061156-73061175 None:intergenic 35.0%
CTGCATGATATGGAAGAAAT+TGG + chr3_4:73061298-73061317 None:intergenic 35.0%
!! CCACTAATTAACTTGCATAC+AGG + chr3_4:73061608-73061627 None:intergenic 35.0%
CCTGTATGCAAGTTAATTAG+TGG - chr3_4:73061605-73061624 Msa0520520:intron 35.0%
!! GTGGTTCACAAACTTTTTCT+AGG - chr3_4:73061624-73061643 Msa0520520:intron 35.0%
!! ACAATGTTGATGATTGTCTG+AGG - chr3_4:73061692-73061711 Msa0520520:intron 35.0%
CAGAAACAGAATTCTTCAGT+TGG + chr3_4:73061808-73061827 None:intergenic 35.0%
!! CTGAAGAATTCTGTTTCTGA+AGG - chr3_4:73061809-73061828 Msa0520520:intron 35.0%
GATTAAGAGAGATTCTGCAA+AGG + chr3_4:73062006-73062025 None:intergenic 35.0%
TCTCTTAATCTTACAGCCTT+TGG - chr3_4:73062016-73062035 Msa0520520:intron 35.0%
! AACGAATCATTGTGATGGAA+AGG - chr3_4:73062142-73062161 Msa0520520:intron 35.0%
AAGGAGATGAAATGTTAGCT+AGG - chr3_4:73062161-73062180 Msa0520520:intron 35.0%
AGGAGATGAAATGTTAGCTA+GGG - chr3_4:73062162-73062181 Msa0520520:intron 35.0%
GCTGTGTGTAAACTGTAAAT+TGG + chr3_4:73062374-73062393 None:intergenic 35.0%
! GGTTATAGCTGATTCATACT+TGG - chr3_4:73062474-73062493 Msa0520520:intron 35.0%
TTGATATAAGTCCACCAAGT+TGG + chr3_4:73062722-73062741 None:intergenic 35.0%
! ATATGGCATGCATCATTTTC+AGG - chr3_4:73062760-73062779 Msa0520520:CDS 35.0%
!! CATCATTTTCAGGAGGAATA+TGG - chr3_4:73062770-73062789 Msa0520520:CDS 35.0%
!!! CTCGTACTTTTGATTTCTGT+TGG + chr3_4:73062851-73062870 None:intergenic 35.0%
! TTCCATGTTGTTTAAGGACT+TGG - chr3_4:73062889-73062908 Msa0520520:CDS 35.0%
TTCCAAGTCCTTAAACAACA+TGG + chr3_4:73062894-73062913 None:intergenic 35.0%
CGACTTGAACAACAATGCAA+TGG + chr3_4:73058864-73058883 None:intergenic 40.0%
GTTAGGAAAGAGAAGGAAGT+GGG + chr3_4:73058967-73058986 None:intergenic 40.0%
AGATACGGTTAGGAAAGAGA+AGG + chr3_4:73058974-73058993 None:intergenic 40.0%
AGTTCCCATTATTCCCTGTT+TGG - chr3_4:73059230-73059249 Msa0520520:CDS 40.0%
GGATTCCAAACAGGGAATAA+TGG + chr3_4:73059238-73059257 None:intergenic 40.0%
!! CTTATCTTAGTTTTCCCCAG+TGG - chr3_4:73059503-73059522 Msa0520520:intron 40.0%
GGTACTTGCCCATTAAGAAT+TGG - chr3_4:73059537-73059556 Msa0520520:intron 40.0%
!! GGAGGTACCCAATTCTTAAT+GGG + chr3_4:73059548-73059567 None:intergenic 40.0%
!! TGGAGGTACCCAATTCTTAA+TGG + chr3_4:73059549-73059568 None:intergenic 40.0%
!!! TTTTTGAGGTGCTAGCTTGA+AGG - chr3_4:73059677-73059696 Msa0520520:intron 40.0%
!!! TTTTGAGGTGCTAGCTTGAA+GGG - chr3_4:73059678-73059697 Msa0520520:intron 40.0%
GCATGATCATAGGATATTGG+TGG - chr3_4:73059808-73059827 Msa0520520:CDS 40.0%
!! CATGATTCGTTTGATGATGG+TGG - chr3_4:73059838-73059857 Msa0520520:CDS 40.0%
TAGAAAAAAGCTAGAGCCTC+TGG - chr3_4:73060455-73060474 Msa0520520:intron 40.0%
CAGTTCCAGATCAAGGATTT+AGG - chr3_4:73060507-73060526 Msa0520520:intron 40.0%
ATCTAGCATGACAGAGAAAG+CGG + chr3_4:73060553-73060572 None:intergenic 40.0%
ACGCGTTTCTCTTCTTTCAT+TGG - chr3_4:73060695-73060714 Msa0520520:intron 40.0%
CTAGTTGTGAAGAGTGAACA+TGG + chr3_4:73060798-73060817 None:intergenic 40.0%
CATGTTCACTCTTCACAACT+AGG - chr3_4:73060796-73060815 Msa0520520:CDS 40.0%
TTCACAACTAGGATTGCTCT+AGG - chr3_4:73060807-73060826 Msa0520520:intron 40.0%
TCTCGCATCTCTTATACCTT+TGG - chr3_4:73061042-73061061 Msa0520520:intron 40.0%
! ACTGACTCAATCAAAAGGGA+GGG + chr3_4:73061133-73061152 None:intergenic 40.0%
!!! CTCTAGATTTTCAAGTCCCA+TGG - chr3_4:73061242-73061261 Msa0520520:CDS 40.0%
!!! AGATTTTCAAGTCCCATGGA+AGG - chr3_4:73061246-73061265 Msa0520520:CDS 40.0%
! ATTCTCACCGGTGTCAATTT+AGG + chr3_4:73061422-73061441 None:intergenic 40.0%
!! ATTCTGTTTCTGAAGGTCAC+TGG - chr3_4:73061816-73061835 Msa0520520:intron 40.0%
!! ATTGATTTAACGGAGGCATC+AGG + chr3_4:73061883-73061902 None:intergenic 40.0%
TGCCTCCGTTAAATCAATGA+AGG - chr3_4:73061885-73061904 Msa0520520:intron 40.0%
!! TGCCTTCATTGATTTAACGG+AGG + chr3_4:73061890-73061909 None:intergenic 40.0%
TGGTTTCAGCCTCTTACAAA+CGG - chr3_4:73062423-73062442 Msa0520520:intron 40.0%
AGACGTGTTAAGTAAGGGAA+AGG - chr3_4:73062453-73062472 Msa0520520:intron 40.0%
! TAGCTGATTCATACTTGGAC+CGG - chr3_4:73062479-73062498 Msa0520520:intron 40.0%
!!! GCATCTGCATCCTCATTTTT+TGG - chr3_4:73062684-73062703 Msa0520520:intron 40.0%
! GCATTGTTGTTCAAGTCGGA+AGG - chr3_4:73058866-73058885 Msa0520520:three_prime_UTR 45.0%
TCCTTCCATGATGATCGTGA+TGG + chr3_4:73058909-73058928 None:intergenic 45.0%
TCACGATCATCATGGAAGGA+AGG - chr3_4:73058909-73058928 Msa0520520:three_prime_UTR 45.0%
GGTTAGGAAAGAGAAGGAAG+TGG + chr3_4:73058968-73058987 None:intergenic 45.0%
GAGAAAGAGGAGATACGGTT+AGG + chr3_4:73058984-73059003 None:intergenic 45.0%
GTGCAGATGCAGAACAAAGA+AGG + chr3_4:73059046-73059065 None:intergenic 45.0%
CTAACAGTCTCTCCAGTAAC+CGG - chr3_4:73059398-73059417 Msa0520520:intron 45.0%
TAACAGTCTCTCCAGTAACC+GGG - chr3_4:73059399-73059418 Msa0520520:intron 45.0%
TTATCTACTTGCCCGGTTAC+TGG + chr3_4:73059413-73059432 None:intergenic 45.0%
!! ATCTTAGTTTTCCCCAGTGG+TGG - chr3_4:73059506-73059525 Msa0520520:intron 45.0%
TACCATTAAGCACCACCACT+GGG + chr3_4:73059521-73059540 None:intergenic 45.0%
AACTGTGTGAGGATTACAGC+TGG + chr3_4:73060492-73060511 None:intergenic 45.0%
GAAAGCGGTTCACGAAAAAC+TGG + chr3_4:73060538-73060557 None:intergenic 45.0%
AGATCGGCAGAGGGAAAATT+GGG + chr3_4:73060934-73060953 None:intergenic 45.0%
TTTACACGAAGAGATGCTGC+AGG + chr3_4:73060972-73060991 None:intergenic 45.0%
TGACTCAATCAAAAGGGAGG+GGG + chr3_4:73061131-73061150 None:intergenic 45.0%
CTGACTCAATCAAAAGGGAG+GGG + chr3_4:73061132-73061151 None:intergenic 45.0%
! GACTGACTCAATCAAAAGGG+AGG + chr3_4:73061134-73061153 None:intergenic 45.0%
TAGCCCACCTAAATTGACAC+CGG - chr3_4:73061412-73061431 Msa0520520:intron 45.0%
! TCACCGGTGTCAATTTAGGT+GGG + chr3_4:73061418-73061437 None:intergenic 45.0%
TATGCTTCTGACAGTGGCAA+TGG - chr3_4:73061655-73061674 Msa0520520:intron 45.0%
TCACCTGTCCAGAGCAATAA+GGG + chr3_4:73061926-73061945 None:intergenic 45.0%
ATCACCTGTCCAGAGCAATA+AGG + chr3_4:73061927-73061946 None:intergenic 45.0%
TAAACGGGACCTTAGCTAGT+CGG + chr3_4:73062042-73062061 None:intergenic 45.0%
ACCGTCAGACGTGTTAAGTA+AGG - chr3_4:73062447-73062466 Msa0520520:intron 45.0%
CCCTTACTTAACACGTCTGA+CGG + chr3_4:73062451-73062470 None:intergenic 45.0%
CCGTCAGACGTGTTAAGTAA+GGG - chr3_4:73062448-73062467 Msa0520520:intron 45.0%
! AGCTGATTCATACTTGGACC+GGG - chr3_4:73062480-73062499 Msa0520520:intron 45.0%
GGATGCAGATGCAAATGCAA+AGG + chr3_4:73062676-73062695 None:intergenic 45.0%
GGATAAACACCATGCCAACT+TGG - chr3_4:73062705-73062724 Msa0520520:intron 45.0%
TAAACACCATGCCAACTTGG+TGG - chr3_4:73062708-73062727 Msa0520520:intron 45.0%
! ATAAGTCCACCAAGTTGGCA+TGG + chr3_4:73062717-73062736 None:intergenic 45.0%
!! TGGCATGCATCATTTTCAGG+AGG - chr3_4:73062763-73062782 Msa0520520:CDS 45.0%
! CTGTACTTGCTAACATGCGC+GGG + chr3_4:73058837-73058856 None:intergenic 50.0%
! GCTGTACTTGCTAACATGCG+CGG + chr3_4:73058838-73058857 None:intergenic 50.0%
TGTCGCCATCACGATCATCA+TGG - chr3_4:73058901-73058920 Msa0520520:three_prime_UTR 50.0%
GCCATCACGATCATCATGGA+AGG - chr3_4:73058905-73058924 Msa0520520:three_prime_UTR 50.0%
GATCATCATGGAAGGAAGGC+AGG - chr3_4:73058913-73058932 Msa0520520:three_prime_UTR 50.0%
GTGGGAGAGAACAAGAGAGA+TGG + chr3_4:73058949-73058968 None:intergenic 50.0%
!! GTTACAGGTGCTACTGCTGA+AGG - chr3_4:73059093-73059112 Msa0520520:three_prime_UTR 50.0%
CTGGAGAGACTGTTAGGAAC+CGG + chr3_4:73059394-73059413 None:intergenic 50.0%
CGGTTACTGGAGAGACTGTT+AGG + chr3_4:73059400-73059419 None:intergenic 50.0%
ACCATTAAGCACCACCACTG+GGG + chr3_4:73059520-73059539 None:intergenic 50.0%
GTACCATTAAGCACCACCAC+TGG + chr3_4:73059522-73059541 None:intergenic 50.0%
! CCTTGATCTGGAACTGTGTG+AGG + chr3_4:73060503-73060522 None:intergenic 50.0%
CCTCACACAGTTCCAGATCA+AGG - chr3_4:73060500-73060519 Msa0520520:intron 50.0%
GATCGGCAGAGGGAAAATTG+GGG + chr3_4:73060933-73060952 None:intergenic 50.0%
GAGATCGGCAGAGGGAAAAT+TGG + chr3_4:73060935-73060954 None:intergenic 50.0%
GAGGGGGAAAACTTCCAACA+GGG + chr3_4:73061115-73061134 None:intergenic 50.0%
! CTCACCGGTGTCAATTTAGG+TGG + chr3_4:73061419-73061438 None:intergenic 50.0%
GTCTCAGGTTCGATTCTCAC+CGG + chr3_4:73061434-73061453 None:intergenic 50.0%
!! GTGGTATTGGCTTGAGACCT+GGG + chr3_4:73061475-73061494 None:intergenic 50.0%
!! AGTGGTATTGGCTTGAGACC+TGG + chr3_4:73061476-73061495 None:intergenic 50.0%
GGTCTCAAGCCAATACCACT+AGG - chr3_4:73061476-73061495 Msa0520520:intron 50.0%
!! TTGGGTTGGCCTAGTGGTAT+TGG + chr3_4:73061488-73061507 None:intergenic 50.0%
GCGCAATATGCTTCTGACAG+TGG - chr3_4:73061649-73061668 Msa0520520:intron 50.0%
!! CTGTTTCTGAAGGTCACTGG+AGG - chr3_4:73061819-73061838 Msa0520520:intron 50.0%
CACGCAGAAGCAAGGAATCA+AGG + chr3_4:73061846-73061865 None:intergenic 50.0%
TCTTGAAGCACGCAGAAGCA+AGG + chr3_4:73061854-73061873 None:intergenic 50.0%
CAGTTCTGCCCTTATTGCTC+TGG - chr3_4:73061915-73061934 Msa0520520:intron 50.0%
CTGACGGTACCGTTTGTAAG+AGG + chr3_4:73062435-73062454 None:intergenic 50.0%
AGACGTGGAAACGGAGAACT+TGG - chr3_4:73062504-73062523 Msa0520520:intron 50.0%
! TCCCCAGTGGTGGTGCTTAA+TGG - chr3_4:73059516-73059535 Msa0520520:intron 55.0%
GCTGGTACGTAAGTCTCCAG+AGG + chr3_4:73060474-73060493 None:intergenic 55.0%
GCGAAGTAGAGATCGGCAGA+GGG + chr3_4:73060943-73060962 None:intergenic 55.0%
AGCGAAGTAGAGATCGGCAG+AGG + chr3_4:73060944-73060963 None:intergenic 55.0%
TGCCGATCTCTACTTCGCTC+TGG - chr3_4:73060945-73060964 Msa0520520:intron 55.0%
GCCGATCTCTACTTCGCTCT+GGG - chr3_4:73060946-73060965 Msa0520520:intron 55.0%
GCCCAGAGCGAAGTAGAGAT+CGG + chr3_4:73060950-73060969 None:intergenic 55.0%
GGAGGGGGAAAACTTCCAAC+AGG + chr3_4:73061116-73061135 None:intergenic 55.0%
TCGAACCTGAGACCTCGAGA+AGG - chr3_4:73061441-73061460 Msa0520520:intron 55.0%
TACCACTAGGCCAACCCAAG+TGG - chr3_4:73061489-73061508 Msa0520520:intron 55.0%
ACCACTAGGCCAACCCAAGT+GGG - chr3_4:73061490-73061509 Msa0520520:intron 55.0%
CGAGCTTAACCCACTTGGGT+TGG + chr3_4:73061502-73061521 None:intergenic 55.0%
GGGTCGAGCTTAACCCACTT+GGG + chr3_4:73061506-73061525 None:intergenic 55.0%
TGGGTCGAGCTTAACCCACT+TGG + chr3_4:73061507-73061526 None:intergenic 55.0%
! CTGCCCTTATTGCTCTGGAC+AGG - chr3_4:73061920-73061939 Msa0520520:intron 55.0%
! AGCCTTTGGCCGACTAGCTA+AGG - chr3_4:73062030-73062049 Msa0520520:intron 55.0%
GACCTTAGCTAGTCGGCCAA+AGG + chr3_4:73062035-73062054 None:intergenic 55.0%
ATACTTGGACCGGGAAGACG+TGG - chr3_4:73062489-73062508 Msa0520520:intron 55.0%
TCTCCGTTTCCACGTCTTCC+CGG + chr3_4:73062501-73062520 None:intergenic 55.0%
GAAACGGAGAACTTGGACCC+TGG - chr3_4:73062511-73062530 Msa0520520:intron 55.0%
ATGGAAGGAAGGCAGGCGCA+TGG - chr3_4:73058920-73058939 Msa0520520:three_prime_UTR 60.0%
GTGCTCCTTCTCGAGGTCTC+AGG + chr3_4:73061449-73061468 None:intergenic 60.0%
! TGGGAGTGTGCTCCTTCTCG+AGG + chr3_4:73061456-73061475 None:intergenic 60.0%
! TCGAGAAGGAGCACACTCCC+AGG - chr3_4:73061455-73061474 Msa0520520:intron 60.0%
!! ACCCACTTGGGTTGGCCTAG+TGG + chr3_4:73061494-73061513 None:intergenic 60.0%
GGACCGGGAAGACGTGGAAA+CGG - chr3_4:73062495-73062514 Msa0520520:intron 60.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 73058760 73062972 73058760 ID=Msa0520520;Name=Msa0520520
chr3_4 mRNA 73058760 73062972 73058760 ID=Msa0520520-mRNA-1;Parent=Msa0520520;Name=Msa0520520-mRNA-1;_AED=0.16;_eAED=0.16;_QI=50|1|1|1|0.85|0.75|8|384|231
chr3_4 exon 73058760 73058950 73058760 ID=Msa0520520-mRNA-1:exon:20357;Parent=Msa0520520-mRNA-1
chr3_4 exon 73058978 73059300 73058978 ID=Msa0520520-mRNA-1:exon:20356;Parent=Msa0520520-mRNA-1
chr3_4 exon 73059791 73059901 73059791 ID=Msa0520520-mRNA-1:exon:20355;Parent=Msa0520520-mRNA-1
chr3_4 exon 73060019 73060086 73060019 ID=Msa0520520-mRNA-1:exon:20354;Parent=Msa0520520-mRNA-1
chr3_4 exon 73060731 73060825 73060731 ID=Msa0520520-mRNA-1:exon:20353;Parent=Msa0520520-mRNA-1
chr3_4 exon 73061204 73061274 73061204 ID=Msa0520520-mRNA-1:exon:20352;Parent=Msa0520520-mRNA-1
chr3_4 exon 73062590 73062632 73062590 ID=Msa0520520-mRNA-1:exon:20351;Parent=Msa0520520-mRNA-1
chr3_4 exon 73062745 73062972 73062745 ID=Msa0520520-mRNA-1:exon:20350;Parent=Msa0520520-mRNA-1
chr3_4 five_prime_UTR 73062923 73062972 73062923 ID=Msa0520520-mRNA-1:five_prime_utr;Parent=Msa0520520-mRNA-1
chr3_4 CDS 73062745 73062922 73062745 ID=Msa0520520-mRNA-1:cds;Parent=Msa0520520-mRNA-1
chr3_4 CDS 73062590 73062632 73062590 ID=Msa0520520-mRNA-1:cds;Parent=Msa0520520-mRNA-1
chr3_4 CDS 73061204 73061274 73061204 ID=Msa0520520-mRNA-1:cds;Parent=Msa0520520-mRNA-1
chr3_4 CDS 73060731 73060825 73060731 ID=Msa0520520-mRNA-1:cds;Parent=Msa0520520-mRNA-1
chr3_4 CDS 73060019 73060086 73060019 ID=Msa0520520-mRNA-1:cds;Parent=Msa0520520-mRNA-1
chr3_4 CDS 73059791 73059901 73059791 ID=Msa0520520-mRNA-1:cds;Parent=Msa0520520-mRNA-1
chr3_4 CDS 73059171 73059300 73059171 ID=Msa0520520-mRNA-1:cds;Parent=Msa0520520-mRNA-1
chr3_4 three_prime_UTR 73058978 73059170 73058978 ID=Msa0520520-mRNA-1:three_prime_utr;Parent=Msa0520520-mRNA-1
chr3_4 three_prime_UTR 73058760 73058950 73058760 ID=Msa0520520-mRNA-1:three_prime_utr;Parent=Msa0520520-mRNA-1
Gene Sequence

>Msa0520520

ATGGCATCATCATCAGTTGTGAGTCCCGCGCATGTTAGCAAGTACAGCAAACCATTGCATTGTTGTTCAAGTCGGAAGGTGAAGTGTGAACTGTCGCCATCACGATCATCATGGAAGGAAGGCAGGCGCATGGTCTCCATCTCTCTTGTTCTCTCCCACTTCCTTCTCTTTCCTAACCGTGCTACTGCTGAAGGAAGTATTATGGACAAATATGTTAAGAGAAAAAAGCTAGAGCCTCTGGAGACTTACGTACCAGCTGTAATCCTCACACAGTTCCAGATCAAGGATTTAGAAAAAACTTTAGAGGGTAATGAGCCCCAATTTTCCCTCTGCCGATCTCTACTTCGCTCTGGGCCTGCAGCATCTCTTCGTGTAAATATTCGAGCAGTCGCGCAATATGCTTCTGACAGTGGCAATGGTAAAACTGCATTGAACAATGTTGATGATTGTCTGAGGTCACTGGAGGACCTTGATTCCTTGCTTCTGCGTGCTTCAAGAAATGATCCTGATGCCTCCGTTAAATCAATGAAGGCAAAAGTCAGTTCTGCCCTTATTGCTCTGGACAGCCTCTTACAAACGGTACCGTCAGACGTGTTAAGTAAGGGAAAGGTTATAGCTGATTCATACTTGGACCGGGAAGACGTGGAAACGGAGAACTTGGACCCTGGTTTAAAGCAATTAGAATCAATACTGTGA

Protein sequence

>Msa0520520

MASSSVVSPAHVSKYSKPLHCCSSRKVKCELSPSRSSWKEGRRMVSISLVLSHFLLFPNRATAEGSIMDKYVKRKKLEPLETYVPAVILTQFQIKDLEKTLEGNEPQFSLCRSLLRSGPAASLRVNIRAVAQYASDSGNGKTALNNVDDCLRSLEDLDSLLLRASRNDPDASVKSMKAKVSSALIALDSLLQTVPSDVLSKGKVIADSYLDREDVETENLDPGLKQLESIL*