AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0249230


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0249230 MtrunA17_Chr2g0304641 87.393 349 17 6 1 329 1 342 0.0 598
Msa0249230 MtrunA17_Chr3g0115691 48.718 312 139 5 38 329 31 341 1.11e-95 287
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0249230 AT2G41040.1 75.000 256 63 1 75 329 97 352 1.92e-142 407
Msa0249230 AT1G78140.1 54.615 260 111 3 76 329 96 354 1.19e-95 288

Find 104 sgRNAs with CRISPR-Local

Find 415 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGGTGCTGCTTTGCATTGC+TGG 0.079979 2_2:+35561741 Msa0249230:CDS
TGTTACAAATGGACCAAATT+TGG 0.159229 2_2:-35563795 None:intergenic
TGATTACTTGCGGCTGAAAA+TGG 0.170168 2_2:+35558468 Msa0249230:five_prime_UTR
CTGGATCTGACAGTGACTTC+TGG 0.199104 2_2:+35560446 Msa0249230:CDS
TCCCGAAAATTTGCCAAATC+TGG 0.210877 2_2:+35561430 Msa0249230:CDS
TTGTAAGAGCAGATGTTTCT+AGG 0.235494 2_2:+35561681 Msa0249230:CDS
GAGGTTGGCGTCAAAATTTC+AGG 0.262886 2_2:+35560843 Msa0249230:CDS
TTCAGGCAAAGTGGCTTTCC+TGG 0.278494 2_2:+35560860 Msa0249230:CDS
TCTTAGTACACGGGTGATTT+CGG 0.316192 2_2:-35563194 None:intergenic
GTTACACTTCATCAACTTCC+TGG 0.317997 2_2:+35563251 Msa0249230:CDS
TCCAGAGTAGGTTCCAGATT+TGG 0.320022 2_2:-35561443 None:intergenic
TTGTGTATCAGTTAACAAAA+TGG 0.324274 2_2:-35558887 None:intergenic
AGAAGCCATAAAACCAAATT+TGG 0.333090 2_2:+35563782 Msa0249230:exon
CACTAGCAAAGACGGGTATC+TGG 0.366593 2_2:+35560427 Msa0249230:CDS
TACAGATGTTATTTATAAAT+CGG 0.367282 2_2:-35563996 None:intergenic
AGGCACGAATATTGAACCTT+TGG 0.368132 2_2:-35558706 None:intergenic
AGAAATGAAAAGGTGAAAAC+TGG 0.382522 2_2:+35563898 Msa0249230:three_prime_UTR
TGGATCTGACAGTGACTTCT+GGG 0.394949 2_2:+35560447 Msa0249230:CDS
GGCACGAATATTGAACCTTT+GGG 0.413534 2_2:-35558705 None:intergenic
GACGCCAACCTCTTTCATAT+AGG 0.414654 2_2:-35560832 None:intergenic
GAAAGTGGGATTTAGTAAAA+AGG 0.418898 2_2:-35558658 None:intergenic
AATTGTATTTGATTATTAAG+AGG 0.422776 2_2:-35558620 None:intergenic
GATTACTTGCGGCTGAAAAT+GGG 0.442106 2_2:+35558469 Msa0249230:five_prime_UTR
AACAAATAAAACAACAAATA+CGG 0.446751 2_2:-35563847 None:intergenic
ATCAAATATTCTTGAAGTTG+AGG 0.451966 2_2:+35564091 Msa0249230:three_prime_UTR
AAGAAGTGGTGGAGTATTTG+TGG 0.460054 2_2:+35563213 Msa0249230:CDS
ATTGTATTTGATTATTAAGA+GGG 0.469023 2_2:-35558619 None:intergenic
CAGAGGTCTTCTCTAGGCTA+TGG 0.469989 2_2:+35563661 Msa0249230:intron
ACGAGAATCAATGTTACAAA+TGG 0.470283 2_2:-35563806 None:intergenic
TAGAAACATCTGCTCTTACA+AGG 0.471408 2_2:-35561679 None:intergenic
TTACACTTCATCAACTTCCT+GGG 0.474826 2_2:+35563252 Msa0249230:CDS
GCCAAATCTGGAACCTACTC+TGG 0.475484 2_2:+35561442 Msa0249230:CDS
TCATAGCATATCTGTCTTGT+GGG 0.476849 2_2:-35564069 None:intergenic
ATGTTGAAGTTCAACCAAAT+CGG 0.478110 2_2:+35560480 Msa0249230:CDS
TGCCTCCTCTGCTGTTGTTG+TGG 0.483280 2_2:+35558724 Msa0249230:CDS
GTTTCATTCCTATATGAAAG+AGG 0.483857 2_2:+35560824 Msa0249230:CDS
ATTGTAGTAGAATGGAGAAT+CGG 0.485004 2_2:-35558554 None:intergenic
AGGTCAGCAATATACAGGTC+TGG 0.485814 2_2:+35560374 Msa0249230:intron
TGTTAACTGATACACAACTA+AGG 0.486102 2_2:+35558893 Msa0249230:CDS
TAAATATGCCAGAAATGAAA+AGG 0.486163 2_2:+35563888 Msa0249230:three_prime_UTR
ATCATAGCATATCTGTCTTG+TGG 0.486616 2_2:-35564070 None:intergenic
ATCAACTGAACTTGATTCAA+AGG 0.486667 2_2:-35561708 None:intergenic
TAATGAAATCGTAGCATTGA+CGG 0.490015 2_2:-35561498 None:intergenic
AGACATATTACTTACAGCAT+TGG 0.490607 2_2:-35561774 None:intergenic
CTTTATAATGCAGTTCAGAA+TGG 0.495463 2_2:+35561339 Msa0249230:intron
GGAGAAGGCGAGGGCGAAAG+TGG 0.497259 2_2:-35558673 None:intergenic
ACTTCAGGTCAGCAATATAC+AGG 0.502396 2_2:+35560369 Msa0249230:intron
CATTCCTATATGAAAGAGGT+TGG 0.503405 2_2:+35560828 Msa0249230:CDS
CATATTACTTACAGCATTGG+AGG 0.505667 2_2:-35561771 None:intergenic
TTTGGGTTTGAGAGCGGAGA+AGG 0.511189 2_2:-35558688 None:intergenic
TTGTAGTAGAATGGAGAATC+GGG 0.520149 2_2:-35558553 None:intergenic
AAGCGGCCATTGTAGTAGAA+TGG 0.520954 2_2:-35558562 None:intergenic
AGCAGCGGTAGTAGCAGAAG+CGG 0.524135 2_2:-35558579 None:intergenic
CTCCACCACTTCTTAGTACA+CGG 0.524333 2_2:-35563204 None:intergenic
AAATCGTACACTAGCAAAGA+CGG 0.529071 2_2:+35560419 Msa0249230:CDS
TATTTGCAGAGGTCTTCTCT+AGG 0.530151 2_2:+35563655 Msa0249230:intron
AGAAGTGGTGGAGTATTTGT+GGG 0.536480 2_2:+35563214 Msa0249230:CDS
CTCCACAACAACAGCAGAGG+AGG 0.537134 2_2:-35558726 None:intergenic
TCTTGTAAAGGTTCACAGGT+TGG 0.538169 2_2:+35563925 Msa0249230:three_prime_UTR
GAGTACTTTGAGCCTGCTAA+AGG 0.538931 2_2:+35561367 Msa0249230:CDS
GTCGATGTTAGCTGTGGAAG+TGG 0.544771 2_2:+35561400 Msa0249230:CDS
AGTGTCTTGTAAAGGTTCAC+AGG 0.545589 2_2:+35563921 Msa0249230:three_prime_UTR
GGCTGAAAATGGGACACAGT+GGG 0.546515 2_2:+35558479 Msa0249230:five_prime_UTR
TCTGAACAAGCGTGCAACCC+AGG 0.547187 2_2:-35563269 None:intergenic
GATTCTCCATTCTACTACAA+TGG 0.548162 2_2:+35558556 Msa0249230:exon
CTTTCCTGGTCCTGATGAAG+AGG 0.548244 2_2:+35560874 Msa0249230:CDS
TCAACTGAACTTGATTCAAA+GGG 0.548708 2_2:-35561707 None:intergenic
ACAATCAGACCACCTTTAGC+AGG 0.549004 2_2:-35561379 None:intergenic
CGTCAAAATTTCAGGCAAAG+TGG 0.551579 2_2:+35560851 Msa0249230:CDS
AAAACTGGAGTGTCTTGTAA+AGG 0.553348 2_2:+35563913 Msa0249230:three_prime_UTR
CTTACAGCATTGGAGGGAGA+TGG 0.562732 2_2:-35561764 None:intergenic
CAATATATTGAAATATGTAG+TGG 0.562805 2_2:+35564119 Msa0249230:three_prime_UTR
GTTTGAGAGCGGAGAAGGCG+AGG 0.563644 2_2:-35558683 None:intergenic
TTTGATTATTAAGAGGGTGA+AGG 0.565563 2_2:-35558613 None:intergenic
AAAGACCTTTGCACTTCATG+TGG 0.572535 2_2:+35563706 Msa0249230:CDS
TGAAGTGTAACGAAGAAAAG+TGG 0.578444 2_2:-35563239 None:intergenic
TCAGTTGATGCGGTTCATGC+TGG 0.581885 2_2:+35561722 Msa0249230:CDS
TGGGGAAGAAAGAAGCTTGG+CGG 0.585272 2_2:+35558498 Msa0249230:five_prime_UTR
TTTGAGAGCGGAGAAGGCGA+GGG 0.588926 2_2:-35558682 None:intergenic
TTCATATAGGAATGAAACAA+GGG 0.589684 2_2:-35560819 None:intergenic
TGAATCAAGTTCAGTTGATG+CGG 0.590902 2_2:+35561712 Msa0249230:CDS
CATACCTCTTCATCAGGACC+AGG 0.591548 2_2:-35560878 None:intergenic
TAAAGCAATTACTCCAGAGT+AGG 0.594128 2_2:-35561455 None:intergenic
TGAACCTTTGGGTTTGAGAG+CGG 0.595270 2_2:-35558694 None:intergenic
GAGAAGGCGAGGGCGAAAGT+GGG 0.600598 2_2:-35558672 None:intergenic
AATCGTACACTAGCAAAGAC+GGG 0.601636 2_2:+35560420 Msa0249230:CDS
TGTTGTTGTGGAGTCTCCGT+CGG 0.604285 2_2:+35558736 Msa0249230:CDS
TACTTTGAGCCTGCTAAAGG+TGG 0.614743 2_2:+35561370 Msa0249230:CDS
AGAAACATCTGCTCTTACAA+GGG 0.617587 2_2:-35561678 None:intergenic
TTCTCCGCTCTCAAACCCAA+AGG 0.617708 2_2:+35558690 Msa0249230:CDS
TTTCATATAGGAATGAAACA+AGG 0.621014 2_2:-35560820 None:intergenic
AAGGAAGAAATGAGAAGCAG+CGG 0.625762 2_2:-35558594 None:intergenic
ATATTACTTACAGCATTGGA+GGG 0.629930 2_2:-35561770 None:intergenic
ATCACCCGTGTACTAAGAAG+TGG 0.637175 2_2:+35563199 Msa0249230:CDS
TAAGACCACATGAAGTGCAA+AGG 0.637387 2_2:-35563711 None:intergenic
CAGTGGGGAAGAAAGAAGCT+TGG 0.637931 2_2:+35558495 Msa0249230:five_prime_UTR
ACCCGTGTACTAAGAAGTGG+TGG 0.640111 2_2:+35563202 Msa0249230:CDS
TCCACCACTTCTTAGTACAC+GGG 0.645948 2_2:-35563203 None:intergenic
CGGCTGAAAATGGGACACAG+TGG 0.646024 2_2:+35558478 Msa0249230:five_prime_UTR
CTGATTGTCGATGTTAGCTG+TGG 0.652004 2_2:+35561394 Msa0249230:CDS
AGACTCCACAACAACAGCAG+AGG 0.656848 2_2:-35558729 None:intergenic
GCTGAAAATGGGACACAGTG+GGG 0.668207 2_2:+35558480 Msa0249230:five_prime_UTR
TCATATAGGAATGAAACAAG+GGG 0.670366 2_2:-35560818 None:intergenic
GGTTGCACGCTTGTTCAGAG+AGG 0.670495 2_2:+35563273 Msa0249230:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCAAAAATATAATAAAAAAC+GGG - chr2_2:35559140-35559159 None:intergenic 10.0%
!! GTCAAAAATATAATAAAAAA+CGG - chr2_2:35559141-35559160 None:intergenic 10.0%
!!! TTTTTTATTATATTTTTGAC+TGG + chr2_2:35559141-35559160 Msa0249230:intron 10.0%
!! AATTTCAAATCTATATATTA+AGG - chr2_2:35563054-35563073 None:intergenic 10.0%
!! AAATATAAATGTAAATCAAA+AGG - chr2_2:35563104-35563123 None:intergenic 10.0%
!! ATTGTATTTGATTATTAAGA+GGG - chr2_2:35558622-35558641 None:intergenic 15.0%
!! AATTGTATTTGATTATTAAG+AGG - chr2_2:35558623-35558642 None:intergenic 15.0%
!! AAAATTATAATTTATACCGA+CGG - chr2_2:35558755-35558774 None:intergenic 15.0%
!! TACAAATATTATTCAAGTAT+GGG - chr2_2:35560935-35560954 None:intergenic 15.0%
!!! ATTTGTAGTTATTGTTTTAA+AGG + chr2_2:35560948-35560967 Msa0249230:intron 15.0%
!!! ACAAAAAAACTTTTATTGAA+CGG - chr2_2:35561129-35561148 None:intergenic 15.0%
!! ATAAATTCAAAATCAAGTAA+AGG - chr2_2:35561562-35561581 None:intergenic 15.0%
!! TTGAAAATTCTTTGTATTAA+AGG + chr2_2:35561883-35561902 Msa0249230:intron 15.0%
!! TAAATCAACAAATATAATTG+TGG - chr2_2:35562503-35562522 None:intergenic 15.0%
!!! ACGTTATTTTTTTTAAAACT+CGG - chr2_2:35562907-35562926 None:intergenic 15.0%
!! AAATCTATATATTAAGGAAA+TGG - chr2_2:35563048-35563067 None:intergenic 15.0%
!! AACAAATAAAACAACAAATA+CGG - chr2_2:35563850-35563869 None:intergenic 15.0%
!!! TACAGATGTTATTTATAAAT+CGG - chr2_2:35563999-35564018 None:intergenic 15.0%
!! GTTAAATAGAGAAAATGAAA+AGG - chr2_2:35558784-35558803 None:intergenic 20.0%
!! AAAAGTTAGTCAAAGAAAAT+TGG + chr2_2:35559070-35559089 Msa0249230:intron 20.0%
!! TTAGAAAGAATTCAAGATAT+TGG + chr2_2:35559929-35559948 Msa0249230:intron 20.0%
!! ATTTGAGAAATCACATATAT+CGG + chr2_2:35560216-35560235 Msa0249230:intron 20.0%
!! ATACAAAATAGATTGTTACA+TGG + chr2_2:35560523-35560542 Msa0249230:intron 20.0%
!! AAAGGATATTGTACAAATAT+TGG - chr2_2:35560650-35560669 None:intergenic 20.0%
!! TGGAAAAATGGATATTTAAA+AGG - chr2_2:35560668-35560687 None:intergenic 20.0%
!! CTACAAATATTATTCAAGTA+TGG - chr2_2:35560936-35560955 None:intergenic 20.0%
!!! TTATTGTTTTAAAGGTGTTT+TGG + chr2_2:35560956-35560975 Msa0249230:intron 20.0%
!!! CAAAAAAACTTTTATTGAAC+GGG - chr2_2:35561128-35561147 None:intergenic 20.0%
!! TGTTATTAATTAAGCTCAAA+AGG - chr2_2:35561257-35561276 None:intergenic 20.0%
!!! ACTTGATTTTGAATTTATTG+CGG + chr2_2:35561564-35561583 Msa0249230:intron 20.0%
!! AACTATCATGCTAATTAATT+AGG - chr2_2:35561952-35561971 None:intergenic 20.0%
!! CACTCTTATAAACTATTATT+TGG - chr2_2:35562395-35562414 None:intergenic 20.0%
!! AAAAAAATAACGTAATGTGT+AGG + chr2_2:35562914-35562933 Msa0249230:intron 20.0%
!! ACAATTCTCATATGAAAATT+GGG - chr2_2:35562981-35563000 None:intergenic 20.0%
!! TACAATTCTCATATGAAAAT+TGG - chr2_2:35562982-35563001 None:intergenic 20.0%
!!! CTACATGTTTTGAAAAATTA+GGG - chr2_2:35563015-35563034 None:intergenic 20.0%
!!! ACTACATGTTTTGAAAAATT+AGG - chr2_2:35563016-35563035 None:intergenic 20.0%
!! AAATGTAAATCAAAAGGATA+AGG - chr2_2:35563098-35563117 None:intergenic 20.0%
!! TATTTCACACTATTTAAACT+AGG + chr2_2:35563119-35563138 Msa0249230:intron 20.0%
!! ATTTCACACTATTTAAACTA+GGG + chr2_2:35563120-35563139 Msa0249230:intron 20.0%
!! CTATTAATATCAGTTTGATA+AGG - chr2_2:35563432-35563451 None:intergenic 20.0%
!!! GAAGTCTTTTATTATGTTTA+CGG + chr2_2:35563756-35563775 Msa0249230:CDS 20.0%
! TAGAGAAAATGAAAAGGAAA+AGG - chr2_2:35558778-35558797 None:intergenic 25.0%
! TTGTGTATCAGTTAACAAAA+TGG - chr2_2:35558890-35558909 None:intergenic 25.0%
! CAACTAAATTTAAACCACTT+GGG - chr2_2:35558944-35558963 None:intergenic 25.0%
! ACAACTAAATTTAAACCACT+TGG - chr2_2:35558945-35558964 None:intergenic 25.0%
!!! GTCAAAAAAGTTGATGTATT+TGG - chr2_2:35559118-35559137 None:intergenic 25.0%
! AGAAAAACATGTTATAGAGT+CGG + chr2_2:35559681-35559700 Msa0249230:intron 25.0%
!!! GATTTGTTAGTTTATTCATG+AGG + chr2_2:35559856-35559875 Msa0249230:intron 25.0%
!! AGTTTGAGTTCAATTGTTAA+TGG - chr2_2:35560012-35560031 None:intergenic 25.0%
! TCAATGGTTCATAACATATA+GGG - chr2_2:35560095-35560114 None:intergenic 25.0%
! ATCAATGGTTCATAACATAT+AGG - chr2_2:35560096-35560115 None:intergenic 25.0%
! TATGAACCATTGATAAGAAA+AGG + chr2_2:35560102-35560121 Msa0249230:intron 25.0%
!! CTCAACAAATAATGGAAAAA+TGG - chr2_2:35560680-35560699 None:intergenic 25.0%
!!! CATTTTTCCATTATTTGTTG+AGG + chr2_2:35560678-35560697 Msa0249230:intron 25.0%
!!! TATAATTTAGTTCTTCTGCA+TGG + chr2_2:35560742-35560761 Msa0249230:intron 25.0%
! TTCATATAGGAATGAAACAA+GGG - chr2_2:35560822-35560841 None:intergenic 25.0%
! TTTCATATAGGAATGAAACA+AGG - chr2_2:35560823-35560842 None:intergenic 25.0%
! ATGACTAATCCTTTATAGAA+AGG + chr2_2:35561063-35561082 Msa0249230:intron 25.0%
! TGACTAATCCTTTATAGAAA+GGG + chr2_2:35561064-35561083 Msa0249230:intron 25.0%
! AAGATATTCCCTTTCTATAA+AGG - chr2_2:35561075-35561094 None:intergenic 25.0%
! TTTATAGAAAGGGAATATCT+TGG + chr2_2:35561074-35561093 Msa0249230:intron 25.0%
! AATTCAAAATCAAGTAAAGG+AGG - chr2_2:35561559-35561578 None:intergenic 25.0%
! ACATTAAATTCATACTTCGT+TGG - chr2_2:35561590-35561609 None:intergenic 25.0%
!! TTAGAATTTAAGAAAGCACA+TGG - chr2_2:35561910-35561929 None:intergenic 25.0%
! AATTCAAATATCCATAGAAG+TGG - chr2_2:35562188-35562207 None:intergenic 25.0%
! AGATCACGTTAAATAAGAAA+TGG + chr2_2:35562335-35562354 Msa0249230:intron 25.0%
! GATCACGTTAAATAAGAAAT+GGG + chr2_2:35562336-35562355 Msa0249230:intron 25.0%
!! TCAAGTAGTATTTTGTATTG+CGG + chr2_2:35562442-35562461 Msa0249230:intron 25.0%
! TCAACAAATATAATTGTGGA+GGG - chr2_2:35562499-35562518 None:intergenic 25.0%
! ATCAACAAATATAATTGTGG+AGG - chr2_2:35562500-35562519 None:intergenic 25.0%
! CAATTCTCATATGAAAATTG+GGG - chr2_2:35562980-35562999 None:intergenic 25.0%
!!! TTTTTCAAAACATGTAGTCA+TGG + chr2_2:35563018-35563037 Msa0249230:intron 25.0%
!! TTTTCAAAACATGTAGTCAT+GGG + chr2_2:35563019-35563038 Msa0249230:intron 25.0%
!! AAATTATTTTCCTGTCAATG+TGG + chr2_2:35563069-35563088 Msa0249230:intron 25.0%
!! AATTATTTTCCTGTCAATGT+GGG + chr2_2:35563070-35563089 Msa0249230:intron 25.0%
! GTCAAATTTCAACTTCTTAA+AGG + chr2_2:35563168-35563187 Msa0249230:intron 25.0%
! CAATAATGAACATCTTTAGA+AGG - chr2_2:35563362-35563381 None:intergenic 25.0%
! ACAAATGATAACTCAACAAA+AGG - chr2_2:35563391-35563410 None:intergenic 25.0%
!!! AAAGATCTTTTTATTTGCAG+AGG + chr2_2:35563644-35563663 Msa0249230:intron 25.0%
! TAAATATGCCAGAAATGAAA+AGG + chr2_2:35563888-35563907 Msa0249230:three_prime_UTR 25.0%
! TATGTGCAAAAATAGTGATT+TGG + chr2_2:35564025-35564044 Msa0249230:three_prime_UTR 25.0%
! ATCAAATATTCTTGAAGTTG+AGG + chr2_2:35564091-35564110 Msa0249230:three_prime_UTR 25.0%
ATTGTAGTAGAATGGAGAAT+CGG - chr2_2:35558557-35558576 None:intergenic 30.0%
TTTGATTATTAAGAGGGTGA+AGG - chr2_2:35558616-35558635 None:intergenic 30.0%
GAAAGTGGGATTTAGTAAAA+AGG - chr2_2:35558661-35558680 None:intergenic 30.0%
TAACGTTACACTCTGAATTA+AGG + chr2_2:35558800-35558819 Msa0249230:intron 30.0%
AATTAAGGAACGAGTTAACT+TGG + chr2_2:35558815-35558834 Msa0249230:intron 30.0%
TGTTAACTGATACACAACTA+AGG + chr2_2:35558893-35558912 Msa0249230:CDS 30.0%
CTCTTAAAACTTAAGATCAG+CGG + chr2_2:35558978-35558997 Msa0249230:intron 30.0%
! CTTTTGCTTAAAATTGAGAC+CGG - chr2_2:35559055-35559074 None:intergenic 30.0%
! GATGTATTTGGTCTAGATTT+TGG - chr2_2:35559106-35559125 None:intergenic 30.0%
TAAAAAACTGTATCGAAGGA+GGG - chr2_2:35559420-35559439 None:intergenic 30.0%
GGAAGAAATACAGAACTTTA+GGG - chr2_2:35559451-35559470 None:intergenic 30.0%
TGGAAGAAATACAGAACTTT+AGG - chr2_2:35559452-35559471 None:intergenic 30.0%
AACTTACAAGTTAAGACCAA+CGG - chr2_2:35560130-35560149 None:intergenic 30.0%
ATCGGTGTAATTATATGTGT+CGG + chr2_2:35560234-35560253 Msa0249230:intron 30.0%
ATGTTGAAGTTCAACCAAAT+CGG + chr2_2:35560480-35560499 Msa0249230:CDS 30.0%
AATGTCACCTCAACAAATAA+TGG - chr2_2:35560688-35560707 None:intergenic 30.0%
TATTTAAGAACTTCACCAAG+TGG - chr2_2:35560773-35560792 None:intergenic 30.0%
TCATATAGGAATGAAACAAG+GGG - chr2_2:35560821-35560840 None:intergenic 30.0%
GTTTCATTCCTATATGAAAG+AGG + chr2_2:35560824-35560843 Msa0249230:CDS 30.0%
! AGAGTCGGTATTTTATAAGT+AGG + chr2_2:35560994-35561013 Msa0249230:intron 30.0%
! GAGTCGGTATTTTATAAGTA+GGG + chr2_2:35560995-35561014 Msa0249230:intron 30.0%
! AGTCGGTATTTTATAAGTAG+GGG + chr2_2:35560996-35561015 Msa0249230:intron 30.0%
AAGTAGGGGAAATAAGAATA+AGG + chr2_2:35561010-35561029 Msa0249230:intron 30.0%
AGTAGGGGAAATAAGAATAA+GGG + chr2_2:35561011-35561030 Msa0249230:intron 30.0%
! TGTGAATCTAGAGCAATAAA+AGG - chr2_2:35561161-35561180 None:intergenic 30.0%
! GATTCACAACAAATCCATTT+TGG + chr2_2:35561173-35561192 Msa0249230:intron 30.0%
GGTACAAAAAGAGAGATATA+TGG - chr2_2:35561236-35561255 None:intergenic 30.0%
CTTTATAATGCAGTTCAGAA+TGG + chr2_2:35561339-35561358 Msa0249230:intron 30.0%
! TTCCAGATTTGGCAAATTTT+CGG - chr2_2:35561435-35561454 None:intergenic 30.0%
! TAATGAAATCGTAGCATTGA+CGG - chr2_2:35561501-35561520 None:intergenic 30.0%
TCAACTGAACTTGATTCAAA+GGG - chr2_2:35561710-35561729 None:intergenic 30.0%
ATCAACTGAACTTGATTCAA+AGG - chr2_2:35561711-35561730 None:intergenic 30.0%
! ATATTACTTACAGCATTGGA+GGG - chr2_2:35561773-35561792 None:intergenic 30.0%
AGACATATTACTTACAGCAT+TGG - chr2_2:35561777-35561796 None:intergenic 30.0%
TTGATGAAAACCACAATCTT+TGG + chr2_2:35561801-35561820 Msa0249230:intron 30.0%
TGATGAAAACCACAATCTTT+GGG + chr2_2:35561802-35561821 Msa0249230:intron 30.0%
ATGACCGATATTATTGTTGT+AGG + chr2_2:35561844-35561863 Msa0249230:intron 30.0%
CATGCCTACAACAATAATAT+CGG - chr2_2:35561851-35561870 None:intergenic 30.0%
! ATTAGCATGATAGTTTGTGT+TGG + chr2_2:35561957-35561976 Msa0249230:intron 30.0%
!! ATAGTTTGTGTTGGTCATTT+TGG + chr2_2:35561966-35561985 Msa0249230:intron 30.0%
!! TAGTTTGTGTTGGTCATTTT+GGG + chr2_2:35561967-35561986 Msa0249230:intron 30.0%
!! CGATTTGCTTTTGTAAGAAT+CGG - chr2_2:35562082-35562101 None:intergenic 30.0%
TTAGGTTCACACATATATTC+TGG - chr2_2:35562244-35562263 None:intergenic 30.0%
ATATGTGTGAACCTAATACA+AGG + chr2_2:35562248-35562267 Msa0249230:intron 30.0%
ATGACTGTATTGCACATTAT+AGG - chr2_2:35562530-35562549 None:intergenic 30.0%
TCAATCTCTATCTTCAAATG+AGG + chr2_2:35562661-35562680 Msa0249230:intron 30.0%
!!! TTTTTTTAAAACTCGGTACC+CGG - chr2_2:35562900-35562919 None:intergenic 30.0%
TCATCTTGAATCTGATTCAA+GGG - chr2_2:35563621-35563640 None:intergenic 30.0%
ATCATCTTGAATCTGATTCA+AGG - chr2_2:35563622-35563641 None:intergenic 30.0%
AGAAGCCATAAAACCAAATT+TGG + chr2_2:35563782-35563801 Msa0249230:exon 30.0%
!!! ATGGACCAAATTTGGTTTTA+TGG - chr2_2:35563790-35563809 None:intergenic 30.0%
TGTTACAAATGGACCAAATT+TGG - chr2_2:35563798-35563817 None:intergenic 30.0%
ACGAGAATCAATGTTACAAA+TGG - chr2_2:35563809-35563828 None:intergenic 30.0%
! AGTTTTCACCTTTTCATTTC+TGG - chr2_2:35563899-35563918 None:intergenic 30.0%
AGAAATGAAAAGGTGAAAAC+TGG + chr2_2:35563898-35563917 Msa0249230:three_prime_UTR 30.0%
!! TGATTTGGAATTCTGTTTTG+TGG + chr2_2:35564040-35564059 Msa0249230:three_prime_UTR 30.0%
TTGTAGTAGAATGGAGAATC+GGG - chr2_2:35558556-35558575 None:intergenic 35.0%
GATTCTCCATTCTACTACAA+TGG + chr2_2:35558556-35558575 Msa0249230:exon 35.0%
GGGATTTAGTAAAAAGGTGA+GGG - chr2_2:35558655-35558674 None:intergenic 35.0%
TGGGATTTAGTAAAAAGGTG+AGG - chr2_2:35558656-35558675 None:intergenic 35.0%
AACTAAGGAACGAGTTAACT+TGG + chr2_2:35558908-35558927 Msa0249230:intron 35.0%
! GCTTTGGGTGGAAAATATAT+GGG + chr2_2:35559238-35559257 Msa0249230:intron 35.0%
CTAAAAAACTGTATCGAAGG+AGG - chr2_2:35559421-35559440 None:intergenic 35.0%
! AAATACAGAACTTTAGGGAG+GGG - chr2_2:35559446-35559465 None:intergenic 35.0%
! GAAATACAGAACTTTAGGGA+GGG - chr2_2:35559447-35559466 None:intergenic 35.0%
! AGAAATACAGAACTTTAGGG+AGG - chr2_2:35559448-35559467 None:intergenic 35.0%
AGTTCTGTATTTCTTCCACT+TGG + chr2_2:35559454-35559473 Msa0249230:intron 35.0%
! TTAGACTTTGTTTGCGAGTT+TGG - chr2_2:35559518-35559537 None:intergenic 35.0%
AAACTCGCAAACAAAGTCTA+AGG + chr2_2:35559517-35559536 Msa0249230:intron 35.0%
AACTCGCAAACAAAGTCTAA+GGG + chr2_2:35559518-35559537 Msa0249230:intron 35.0%
TAACAAATCATTAGCCCCAA+GGG - chr2_2:35559845-35559864 None:intergenic 35.0%
! TGAACTCAAACTTTTCCTTC+AGG + chr2_2:35560020-35560039 Msa0249230:intron 35.0%
TTAAGTACGAAGCAGGATAA+AGG + chr2_2:35560045-35560064 Msa0249230:intron 35.0%
ACTTACAAGTTAAGACCAAC+GGG - chr2_2:35560129-35560148 None:intergenic 35.0%
!! GTTGGTCTTAACTTGTAAGT+TGG + chr2_2:35560129-35560148 Msa0249230:intron 35.0%
TATGCATGAGATATGAAGCA+CGG + chr2_2:35560157-35560176 Msa0249230:intron 35.0%
! GTAATTATATGTGTCGGTGT+CGG + chr2_2:35560240-35560259 Msa0249230:intron 35.0%
CTTAATGACTTTGCAACTTC+AGG + chr2_2:35560354-35560373 Msa0249230:intron 35.0%
AAATCGTACACTAGCAAAGA+CGG + chr2_2:35560419-35560438 Msa0249230:CDS 35.0%
CTAAAAAGTTCAGTCCGATT+TGG - chr2_2:35560497-35560516 None:intergenic 35.0%
! CAAATCGGACTGAACTTTTT+AGG + chr2_2:35560495-35560514 Msa0249230:CDS 35.0%
TGAGAAGTTACTATCACATG+AGG + chr2_2:35560618-35560637 Msa0249230:intron 35.0%
ACTGTGTCTAAACCTTTATC+AGG + chr2_2:35560792-35560811 Msa0249230:intron 35.0%
CATTCCTATATGAAAGAGGT+TGG + chr2_2:35560828-35560847 Msa0249230:CDS 35.0%
! AAAAAGCATACCTCTTCATC+AGG - chr2_2:35560887-35560906 None:intergenic 35.0%
!!! GGTGTTTTGGTAGACATAAT+CGG + chr2_2:35560969-35560988 Msa0249230:intron 35.0%
TAGACATAATCGGTTAGAGT+CGG + chr2_2:35560979-35560998 Msa0249230:intron 35.0%
GTAGGGGAAATAAGAATAAG+GGG + chr2_2:35561012-35561031 Msa0249230:intron 35.0%
TCTGTTCATTTGAGAGTTTG+TGG + chr2_2:35561039-35561058 Msa0249230:intron 35.0%
ATAGAAAGGGAATATCTTGG+AGG + chr2_2:35561077-35561096 Msa0249230:intron 35.0%
GTGTGAGTCATTAACCAAAA+TGG - chr2_2:35561190-35561209 None:intergenic 35.0%
! TCCAGATTTGGCAAATTTTC+GGG - chr2_2:35561434-35561453 None:intergenic 35.0%
TAAAGCAATTACTCCAGAGT+AGG - chr2_2:35561458-35561477 None:intergenic 35.0%
TAAAGGAGGAAAACAATACG+TGG - chr2_2:35561545-35561564 None:intergenic 35.0%
AGAAACATCTGCTCTTACAA+GGG - chr2_2:35561681-35561700 None:intergenic 35.0%
TAGAAACATCTGCTCTTACA+AGG - chr2_2:35561682-35561701 None:intergenic 35.0%
TTGTAAGAGCAGATGTTTCT+AGG + chr2_2:35561681-35561700 Msa0249230:CDS 35.0%
! TGAATCAAGTTCAGTTGATG+CGG + chr2_2:35561712-35561731 Msa0249230:CDS 35.0%
! CATATTACTTACAGCATTGG+AGG - chr2_2:35561774-35561793 None:intergenic 35.0%
GCACAATGTCATATGATAAG+TGG - chr2_2:35561996-35562015 None:intergenic 35.0%
CTTTAGTTACGACAATGAAG+TGG - chr2_2:35562141-35562160 None:intergenic 35.0%
AGTCAAGATTTCCACTTCTA+TGG + chr2_2:35562174-35562193 Msa0249230:intron 35.0%
GTTAAATAAGAAATGGGCCT+AGG + chr2_2:35562342-35562361 Msa0249230:intron 35.0%
AACCATGACTTTGTGTAAGT+GGG - chr2_2:35562702-35562721 None:intergenic 35.0%
TAACCCATCAAAATTGGCAT+CGG - chr2_2:35562794-35562813 None:intergenic 35.0%
! ATGGACTAACCCATCAAAAT+TGG - chr2_2:35562800-35562819 None:intergenic 35.0%
TCATATGAAAATTGGGGTCA+CGG - chr2_2:35562974-35562993 None:intergenic 35.0%
TGAAGTGTAACGAAGAAAAG+TGG - chr2_2:35563242-35563261 None:intergenic 35.0%
TTACACTTCATCAACTTCCT+GGG + chr2_2:35563252-35563271 Msa0249230:CDS 35.0%
TGATAACTCAACAAAAGGCA+AGG - chr2_2:35563386-35563405 None:intergenic 35.0%
! AAAACTGGAGTGTCTTGTAA+AGG + chr2_2:35563913-35563932 Msa0249230:three_prime_UTR 35.0%
TCATAGCATATCTGTCTTGT+GGG - chr2_2:35564072-35564091 None:intergenic 35.0%
ATCATAGCATATCTGTCTTG+TGG - chr2_2:35564073-35564092 None:intergenic 35.0%
TGATTACTTGCGGCTGAAAA+TGG + chr2_2:35558468-35558487 Msa0249230:five_prime_UTR 40.0%
GATTACTTGCGGCTGAAAAT+GGG + chr2_2:35558469-35558488 Msa0249230:five_prime_UTR 40.0%
AAGGAAGAAATGAGAAGCAG+CGG - chr2_2:35558597-35558616 None:intergenic 40.0%
!! TAAAAAGGTGAGGGCATTTG+GGG - chr2_2:35558646-35558665 None:intergenic 40.0%
!! GTAAAAAGGTGAGGGCATTT+GGG - chr2_2:35558647-35558666 None:intergenic 40.0%
!! AGTAAAAAGGTGAGGGCATT+TGG - chr2_2:35558648-35558667 None:intergenic 40.0%
GGCACGAATATTGAACCTTT+GGG - chr2_2:35558708-35558727 None:intergenic 40.0%
AGGCACGAATATTGAACCTT+TGG - chr2_2:35558709-35558728 None:intergenic 40.0%
TGCTTAAAATTGAGACCGGA+GGG - chr2_2:35559051-35559070 None:intergenic 40.0%
TTGCTTAAAATTGAGACCGG+AGG - chr2_2:35559052-35559071 None:intergenic 40.0%
ATTACATTTACCCCGCTCTA+AGG + chr2_2:35559183-35559202 Msa0249230:intron 40.0%
! CTCTTTGTTTGGGAGTTTGA+AGG + chr2_2:35559206-35559225 Msa0249230:intron 40.0%
!! GGCTTTGGGTGGAAAATATA+TGG + chr2_2:35559237-35559256 Msa0249230:intron 40.0%
!!! GTTTTGAGGGTGGTTTTAGA+TGG - chr2_2:35559398-35559417 None:intergenic 40.0%
GGGCTAAAAAACTGTATCGA+AGG - chr2_2:35559424-35559443 None:intergenic 40.0%
! AATACAGAACTTTAGGGAGG+GGG - chr2_2:35559445-35559464 None:intergenic 40.0%
GGAAAAATAGAAGGACCAAG+TGG - chr2_2:35559472-35559491 None:intergenic 40.0%
!! GAGGGCTTTGGAAAAATAGA+AGG - chr2_2:35559481-35559500 None:intergenic 40.0%
! ACTTTGTTTGCGAGTTTGGA+GGG - chr2_2:35559514-35559533 None:intergenic 40.0%
! ACAAAGTCTAAGGGTGTGTT+TGG + chr2_2:35559527-35559546 Msa0249230:intron 40.0%
! TAAGGGTGTGTTTGGATTGA+GGG + chr2_2:35559535-35559554 Msa0249230:intron 40.0%
TGTGTTTGGATTGAGGGTTT+AGG + chr2_2:35559541-35559560 Msa0249230:intron 40.0%
TTTGGATTGAGGGTTTAGGA+GGG + chr2_2:35559545-35559564 Msa0249230:intron 40.0%
TTTGGATTGAGGGTTTAGGA+GGG - chr2_2:35559545-35559564 None:intergenic 40.0%
TGTGTTTGGATTGAGGGTTT+AGG - chr2_2:35559541-35559560 None:intergenic 40.0%
TTAGGGTGTGTTTGGATTGA+GGG - chr2_2:35559754-35559773 None:intergenic 40.0%
TAGTTCTCTTAGGGTGTGTT+TGG - chr2_2:35559762-35559781 None:intergenic 40.0%
CAACATGTTGAATGCAAGTC+CGG + chr2_2:35559799-35559818 Msa0249230:intron 40.0%
AACAAATCATTAGCCCCAAG+GGG - chr2_2:35559844-35559863 None:intergenic 40.0%
CTAACAAATCATTAGCCCCA+AGG - chr2_2:35559846-35559865 None:intergenic 40.0%
GCTTCGTACTTAAATCCTGA+AGG - chr2_2:35560038-35560057 None:intergenic 40.0%
TCAGGATTTAAGTACGAAGC+AGG + chr2_2:35560038-35560057 Msa0249230:intron 40.0%
! ACGGGACCTTTTCTTATCAA+TGG - chr2_2:35560111-35560130 None:intergenic 40.0%
TTGATAAGAAAAGGTCCCGT+TGG + chr2_2:35560111-35560130 Msa0249230:intron 40.0%
TGAGATATGAAGCACGGATA+CGG + chr2_2:35560163-35560182 Msa0249230:intron 40.0%
ACTTCAGGTCAGCAATATAC+AGG + chr2_2:35560369-35560388 Msa0249230:intron 40.0%
AATCGTACACTAGCAAAGAC+GGG + chr2_2:35560420-35560439 Msa0249230:CDS 40.0%
CGTCAAAATTTCAGGCAAAG+TGG + chr2_2:35560851-35560870 Msa0249230:CDS 40.0%
GTGCATTACAACTACAATGC+TGG - chr2_2:35560913-35560932 None:intergenic 40.0%
TCCCGAAAATTTGCCAAATC+TGG + chr2_2:35561430-35561449 Msa0249230:CDS 40.0%
ATCAGATATCCTCACGCAAA+GGG - chr2_2:35561616-35561635 None:intergenic 40.0%
AATCAGATATCCTCACGCAA+AGG - chr2_2:35561617-35561636 None:intergenic 40.0%
GAAAACCACAATCTTTGGGT+TGG + chr2_2:35561806-35561825 Msa0249230:intron 40.0%
TTGCTAGCACTCCTTGTATT+AGG - chr2_2:35562262-35562281 None:intergenic 40.0%
CAAAGTTACGTATGCACGTT+AGG + chr2_2:35562603-35562622 Msa0249230:intron 40.0%
AACCCACTTACACAAAGTCA+TGG + chr2_2:35562697-35562716 Msa0249230:intron 40.0%
CAACCATGACTTTGTGTAAG+TGG - chr2_2:35562703-35562722 None:intergenic 40.0%
CACTTACACAAAGTCATGGT+TGG + chr2_2:35562701-35562720 Msa0249230:intron 40.0%
!!! TGTCTTGGGATTTTAGAGTG+TGG + chr2_2:35562735-35562754 Msa0249230:intron 40.0%
!!! GTCTTGGGATTTTAGAGTGT+GGG + chr2_2:35562736-35562755 Msa0249230:intron 40.0%
!!! GAGTATCGAACCTGAGATTT+TGG - chr2_2:35562770-35562789 None:intergenic 40.0%
AACCCATCAAAATTGGCATC+GGG - chr2_2:35562793-35562812 None:intergenic 40.0%
TCTTAGTACACGGGTGATTT+CGG - chr2_2:35563197-35563216 None:intergenic 40.0%
! AAGAAGTGGTGGAGTATTTG+TGG + chr2_2:35563213-35563232 Msa0249230:CDS 40.0%
! AGAAGTGGTGGAGTATTTGT+GGG + chr2_2:35563214-35563233 Msa0249230:CDS 40.0%
GTTACACTTCATCAACTTCC+TGG + chr2_2:35563251-35563270 Msa0249230:CDS 40.0%
GACTTTATGACCTCAAGAGA+CGG - chr2_2:35563496-35563515 None:intergenic 40.0%
CTAAGATGACACCTCATGAA+CGG + chr2_2:35563528-35563547 Msa0249230:intron 40.0%
TAGTCAATACTCCGTTCATG+AGG - chr2_2:35563542-35563561 None:intergenic 40.0%
TATTTGCAGAGGTCTTCTCT+AGG + chr2_2:35563655-35563674 Msa0249230:intron 40.0%
AAAGACCTTTGCACTTCATG+TGG + chr2_2:35563706-35563725 Msa0249230:CDS 40.0%
TAAGACCACATGAAGTGCAA+AGG - chr2_2:35563714-35563733 None:intergenic 40.0%
AGTGTCTTGTAAAGGTTCAC+AGG + chr2_2:35563921-35563940 Msa0249230:three_prime_UTR 40.0%
TCTTGTAAAGGTTCACAGGT+TGG + chr2_2:35563925-35563944 Msa0249230:three_prime_UTR 40.0%
AAGCGGCCATTGTAGTAGAA+TGG - chr2_2:35558565-35558584 None:intergenic 45.0%
! TGAACCTTTGGGTTTGAGAG+CGG - chr2_2:35558697-35558716 None:intergenic 45.0%
TTGGATTGTTCTTGCCCAAG+TGG + chr2_2:35558927-35558946 Msa0249230:intron 45.0%
TGACACTCTAGTCCAAAGGA+AGG + chr2_2:35559002-35559021 Msa0249230:intron 45.0%
AGCTAGAGGTTTCCTTCCTT+TGG - chr2_2:35559017-35559036 None:intergenic 45.0%
!! GGGAGTACTTACTAAGCTAG+AGG - chr2_2:35559031-35559050 None:intergenic 45.0%
AGCTTAGTAAGTACTCCCTC+CGG + chr2_2:35559033-35559052 Msa0249230:intron 45.0%
AAACAAAGAGCCTTAGAGCG+GGG - chr2_2:35559196-35559215 None:intergenic 45.0%
CAAACAAAGAGCCTTAGAGC+GGG - chr2_2:35559197-35559216 None:intergenic 45.0%
CCAAACAAAGAGCCTTAGAG+CGG - chr2_2:35559198-35559217 None:intergenic 45.0%
!! CGCTCTAAGGCTCTTTGTTT+GGG + chr2_2:35559196-35559215 Msa0249230:intron 45.0%
!! GTATCGAAGGAGGGTTTTGA+GGG - chr2_2:35559411-35559430 None:intergenic 45.0%
! TGTATCGAAGGAGGGTTTTG+AGG - chr2_2:35559412-35559431 None:intergenic 45.0%
! ATACAGAACTTTAGGGAGGG+GGG - chr2_2:35559444-35559463 None:intergenic 45.0%
! CTTTGTTTGCGAGTTTGGAG+GGG - chr2_2:35559513-35559532 None:intergenic 45.0%
! GACTTTGTTTGCGAGTTTGG+AGG - chr2_2:35559515-35559534 None:intergenic 45.0%
! CTAAGGGTGTGTTTGGATTG+AGG + chr2_2:35559534-35559553 Msa0249230:intron 45.0%
GTTTGGATTGAGGGTTTAGG+AGG + chr2_2:35559544-35559563 Msa0249230:intron 45.0%
TTGGATTGAGGGTTTAGGAG+GGG + chr2_2:35559546-35559565 Msa0249230:intron 45.0%
TTGGATTGAGGGTTTAGGAG+GGG - chr2_2:35559546-35559565 None:intergenic 45.0%
GTTTGGATTGAGGGTTTAGG+AGG - chr2_2:35559544-35559563 None:intergenic 45.0%
CTTAGGGTGTGTTTGGATTG+AGG - chr2_2:35559755-35559774 None:intergenic 45.0%
ACACACCCTAAGAGAACTAG+TGG + chr2_2:35559763-35559782 Msa0249230:intron 45.0%
! CTCCTCCACTAGTTCTCTTA+GGG - chr2_2:35559771-35559790 None:intergenic 45.0%
! TCTCCTCCACTAGTTCTCTT+AGG - chr2_2:35559772-35559791 None:intergenic 45.0%
TTGGTCTAATAGAGCAGGAC+CGG - chr2_2:35559821-35559840 None:intergenic 45.0%
CTCTATTAGACCAACCCCTT+GGG + chr2_2:35559827-35559846 Msa0249230:intron 45.0%
TCTATTAGACCAACCCCTTG+GGG + chr2_2:35559828-35559847 Msa0249230:intron 45.0%
AATGCACTATGAAGCACGGA+CGG - chr2_2:35560279-35560298 None:intergenic 45.0%
TCCGTGCTTCATAGTGCATT+AGG + chr2_2:35560279-35560298 Msa0249230:intron 45.0%
CCCTAATGCACTATGAAGCA+CGG - chr2_2:35560283-35560302 None:intergenic 45.0%
CCGTGCTTCATAGTGCATTA+GGG + chr2_2:35560280-35560299 Msa0249230:intron 45.0%
GCTTCATAGTGCATTAGGGA+AGG + chr2_2:35560284-35560303 Msa0249230:intron 45.0%
AGGTCAGCAATATACAGGTC+TGG + chr2_2:35560374-35560393 Msa0249230:intron 45.0%
TGGATCTGACAGTGACTTCT+GGG + chr2_2:35560447-35560466 Msa0249230:CDS 45.0%
TTCTGCATGGTTCAACCACT+TGG + chr2_2:35560755-35560774 Msa0249230:intron 45.0%
AACAAGGGGACTCCTGATAA+AGG - chr2_2:35560807-35560826 None:intergenic 45.0%
GACGCCAACCTCTTTCATAT+AGG - chr2_2:35560835-35560854 None:intergenic 45.0%
GAGGTTGGCGTCAAAATTTC+AGG + chr2_2:35560843-35560862 Msa0249230:CDS 45.0%
GACTCACACACATCACACAA+AGG + chr2_2:35561201-35561220 Msa0249230:intron 45.0%
ACATCACACAAAGGAAGCTG+CGG + chr2_2:35561210-35561229 Msa0249230:intron 45.0%
GAGTACTTTGAGCCTGCTAA+AGG + chr2_2:35561367-35561386 Msa0249230:CDS 45.0%
TACTTTGAGCCTGCTAAAGG+TGG + chr2_2:35561370-35561389 Msa0249230:CDS 45.0%
ACAATCAGACCACCTTTAGC+AGG - chr2_2:35561382-35561401 None:intergenic 45.0%
CTGATTGTCGATGTTAGCTG+TGG + chr2_2:35561394-35561413 Msa0249230:CDS 45.0%
TCCAGAGTAGGTTCCAGATT+TGG - chr2_2:35561446-35561465 None:intergenic 45.0%
TAATGTTTCCCCTTTGCGTG+AGG + chr2_2:35561604-35561623 Msa0249230:intron 45.0%
TCAGATATCCTCACGCAAAG+GGG - chr2_2:35561615-35561634 None:intergenic 45.0%
!! AACCACAATCTTTGGGTTGG+CGG + chr2_2:35561809-35561828 Msa0249230:intron 45.0%
ATGGGCCTAGGCTATTTACT+TGG + chr2_2:35562354-35562373 Msa0249230:intron 45.0%
TCGCTCCAAGTAAATAGCCT+AGG - chr2_2:35562362-35562381 None:intergenic 45.0%
!! ATCGAACCTGAGATTTTGGC+AGG - chr2_2:35562766-35562785 None:intergenic 45.0%
!! TCCCCGATGCCAATTTTGAT+GGG + chr2_2:35562788-35562807 Msa0249230:intron 45.0%
ACCCATCAAAATTGGCATCG+GGG - chr2_2:35562792-35562811 None:intergenic 45.0%
GTCCATACATAGCATTGCTC+TGG + chr2_2:35562814-35562833 Msa0249230:intron 45.0%
AGCCAGAGCAATGCTATGTA+TGG - chr2_2:35562819-35562838 None:intergenic 45.0%
!! AGCATTGCTCTGGCTTTACA+TGG + chr2_2:35562824-35562843 Msa0249230:intron 45.0%
!! GCATTGCTCTGGCTTTACAT+GGG + chr2_2:35562825-35562844 Msa0249230:intron 45.0%
!! CATTGCTCTGGCTTTACATG+GGG + chr2_2:35562826-35562845 Msa0249230:intron 45.0%
!! ATTGCTCTGGCTTTACATGG+GGG + chr2_2:35562827-35562846 Msa0249230:intron 45.0%
GGTCACGGAAAGAAATTTGG+AGG - chr2_2:35562959-35562978 None:intergenic 45.0%
TGGGGTCACGGAAAGAAATT+TGG - chr2_2:35562962-35562981 None:intergenic 45.0%
! GATAAGGTACCCACATTGAC+AGG - chr2_2:35563082-35563101 None:intergenic 45.0%
ATCACCCGTGTACTAAGAAG+TGG + chr2_2:35563199-35563218 Msa0249230:CDS 45.0%
TCCACCACTTCTTAGTACAC+GGG - chr2_2:35563206-35563225 None:intergenic 45.0%
CTCCACCACTTCTTAGTACA+CGG - chr2_2:35563207-35563226 None:intergenic 45.0%
GGCTGAAAATGGGACACAGT+GGG + chr2_2:35558479-35558498 Msa0249230:five_prime_UTR 50.0%
GCTGAAAATGGGACACAGTG+GGG + chr2_2:35558480-35558499 Msa0249230:five_prime_UTR 50.0%
CAGTGGGGAAGAAAGAAGCT+TGG + chr2_2:35558495-35558514 Msa0249230:five_prime_UTR 50.0%
TGGGGAAGAAAGAAGCTTGG+CGG + chr2_2:35558498-35558517 Msa0249230:five_prime_UTR 50.0%
! TTTGGGTTTGAGAGCGGAGA+AGG - chr2_2:35558691-35558710 None:intergenic 50.0%
TTCTCCGCTCTCAAACCCAA+AGG + chr2_2:35558690-35558709 Msa0249230:CDS 50.0%
AGACTCCACAACAACAGCAG+AGG - chr2_2:35558732-35558751 None:intergenic 50.0%
TGTTGTTGTGGAGTCTCCGT+CGG + chr2_2:35558736-35558755 Msa0249230:CDS 50.0%
CGGATGACACTCTAGTCCAA+AGG + chr2_2:35558998-35559017 Msa0249230:intron 50.0%
!! CCGCTCTAAGGCTCTTTGTT+TGG + chr2_2:35559195-35559214 Msa0249230:intron 50.0%
GTTTGGGAGTTTGAAGGCGA+AGG + chr2_2:35559212-35559231 Msa0249230:intron 50.0%
TTTGCGAGTTTGGAGGGGAA+GGG - chr2_2:35559508-35559527 None:intergenic 50.0%
ATTGAGGGTTTAGGAGGGGA+GGG + chr2_2:35559550-35559569 Msa0249230:intron 50.0%
TTGAGGGTTTAGGAGGGGAA+GGG - chr2_2:35559738-35559757 None:intergenic 50.0%
ATTGAGGGTTTAGGAGGGGA+AGG - chr2_2:35559550-35559569 None:intergenic 50.0%
CACCCTAAGAGAACTAGTGG+AGG + chr2_2:35559766-35559785 Msa0249230:intron 50.0%
!! AGGGGTTGGTCTAATAGAGC+AGG - chr2_2:35559826-35559845 None:intergenic 50.0%
GCTCTATTAGACCAACCCCT+TGG + chr2_2:35559826-35559845 Msa0249230:intron 50.0%
AATCATTAGCCCCAAGGGGT+TGG - chr2_2:35559840-35559859 None:intergenic 50.0%
CACTAGCAAAGACGGGTATC+TGG + chr2_2:35560427-35560446 Msa0249230:CDS 50.0%
CTGGATCTGACAGTGACTTC+TGG + chr2_2:35560446-35560465 Msa0249230:CDS 50.0%
TTCAGGCAAAGTGGCTTTCC+TGG + chr2_2:35560860-35560879 Msa0249230:CDS 50.0%
CTTTCCTGGTCCTGATGAAG+AGG + chr2_2:35560874-35560893 Msa0249230:CDS 50.0%
CATACCTCTTCATCAGGACC+AGG - chr2_2:35560881-35560900 None:intergenic 50.0%
GTCGATGTTAGCTGTGGAAG+TGG + chr2_2:35561400-35561419 Msa0249230:CDS 50.0%
! GCCAAATCTGGAACCTACTC+TGG + chr2_2:35561442-35561461 Msa0249230:CDS 50.0%
! TCAGTTGATGCGGTTCATGC+TGG + chr2_2:35561722-35561741 Msa0249230:CDS 50.0%
! CTTACAGCATTGGAGGGAGA+TGG - chr2_2:35561767-35561786 None:intergenic 50.0%
TACCGCCAACCCAAAGATTG+TGG - chr2_2:35561814-35561833 None:intergenic 50.0%
! ACACAAAGTCATGGTTGGCC+TGG + chr2_2:35562706-35562725 Msa0249230:intron 50.0%
!! AAAGTCATGGTTGGCCTGGT+GGG + chr2_2:35562710-35562729 Msa0249230:intron 50.0%
! CTCCCCGATGCCAATTTTGA+TGG + chr2_2:35562787-35562806 Msa0249230:intron 50.0%
AATCCAACCGTCCACTTGTG+GGG - chr2_2:35562853-35562872 None:intergenic 50.0%
CAATCCAACCGTCCACTTGT+GGG - chr2_2:35562854-35562873 None:intergenic 50.0%
! TTGGATTGGACCCCTCGAAT+CGG + chr2_2:35562866-35562885 Msa0249230:intron 50.0%
ACCCGTGTACTAAGAAGTGG+TGG + chr2_2:35563202-35563221 Msa0249230:CDS 50.0%
AGGCACAATGTTGACGACTC+AGG - chr2_2:35563342-35563361 None:intergenic 50.0%
TGGTTGAACTCCGTCTCTTG+AGG + chr2_2:35563483-35563502 Msa0249230:intron 50.0%
CAGAGGTCTTCTCTAGGCTA+TGG + chr2_2:35563661-35563680 Msa0249230:intron 50.0%
CGGCTGAAAATGGGACACAG+TGG + chr2_2:35558478-35558497 Msa0249230:five_prime_UTR 55.0%
AGCAGCGGTAGTAGCAGAAG+CGG - chr2_2:35558582-35558601 None:intergenic 55.0%
TTTGAGAGCGGAGAAGGCGA+GGG - chr2_2:35558685-35558704 None:intergenic 55.0%
TGCCTCCTCTGCTGTTGTTG+TGG + chr2_2:35558724-35558743 Msa0249230:CDS 55.0%
CTCCACAACAACAGCAGAGG+AGG - chr2_2:35558729-35558748 None:intergenic 55.0%
TGGGAGTTTGAAGGCGAAGG+AGG + chr2_2:35559215-35559234 Msa0249230:intron 55.0%
GGGAGTTTGAAGGCGAAGGA+GGG + chr2_2:35559216-35559235 Msa0249230:intron 55.0%
TTGAAGGCGAAGGAGGGCTT+TGG + chr2_2:35559222-35559241 Msa0249230:intron 55.0%
TGAAGGCGAAGGAGGGCTTT+GGG + chr2_2:35559223-35559242 Msa0249230:intron 55.0%
!!! TCGAAGGAGGGTTTTGAGGG+TGG - chr2_2:35559408-35559427 None:intergenic 55.0%
GTTTGCGAGTTTGGAGGGGA+AGG - chr2_2:35559509-35559528 None:intergenic 55.0%
GATTGAGGGTTTAGGAGGGG+AGG + chr2_2:35559549-35559568 Msa0249230:intron 55.0%
TGAAGCACGGATACGGACAC+CGG + chr2_2:35560170-35560189 Msa0249230:intron 55.0%
AGCAGTGTCTGTGTCGTGTC+CGG - chr2_2:35560192-35560211 None:intergenic 55.0%
!! CTGGTGCTGCTTTGCATTGC+TGG + chr2_2:35561741-35561760 Msa0249230:CDS 55.0%
!! CAAAGTCATGGTTGGCCTGG+TGG + chr2_2:35562709-35562728 Msa0249230:intron 55.0%
!! AAGTCATGGTTGGCCTGGTG+GGG + chr2_2:35562711-35562730 Msa0249230:intron 55.0%
AATCCCAAGACAACCCCACC+AGG - chr2_2:35562727-35562746 None:intergenic 55.0%
GGTGCTCCTGCCAAAATCTC+AGG + chr2_2:35562757-35562776 Msa0249230:intron 55.0%
CCAATCCAACCGTCCACTTG+TGG - chr2_2:35562855-35562874 None:intergenic 55.0%
CCACAAGTGGACGGTTGGAT+TGG + chr2_2:35562852-35562871 Msa0249230:intron 55.0%
AAAACTCGGTACCCGGCACA+AGG - chr2_2:35562893-35562912 None:intergenic 55.0%
TCTGAACAAGCGTGCAACCC+AGG - chr2_2:35563272-35563291 None:intergenic 55.0%
GGTTGCACGCTTGTTCAGAG+AGG + chr2_2:35563273-35563292 Msa0249230:CDS 55.0%
GAGAAGGCGAGGGCGAAAGT+GGG - chr2_2:35558675-35558694 None:intergenic 60.0%
GTTTGAGAGCGGAGAAGGCG+AGG - chr2_2:35558686-35558705 None:intergenic 60.0%
GAGTTTGGAGGGGAAGGGAG+GGG - chr2_2:35559503-35559522 None:intergenic 60.0%
CGAGTTTGGAGGGGAAGGGA+GGG - chr2_2:35559504-35559523 None:intergenic 60.0%
GGTTTAGGAGGGGAAGGGAG+GGG - chr2_2:35559733-35559752 None:intergenic 60.0%
GGGTTTAGGAGGGGAAGGGA+GGG - chr2_2:35559734-35559753 None:intergenic 60.0%
AGGGTTTAGGAGGGGAAGGG+AGG - chr2_2:35559735-35559754 None:intergenic 60.0%
TTGGCCTGGTGGGGTTGTCT+TGG + chr2_2:35562720-35562739 Msa0249230:intron 60.0%
TGGCCTGGTGGGGTTGTCTT+GGG + chr2_2:35562721-35562740 Msa0249230:intron 60.0%
TTACATGGGGGCCCCACAAG+TGG + chr2_2:35562839-35562858 Msa0249230:intron 60.0%
!! GGCACAAGGACCGATTCGAG+GGG - chr2_2:35562879-35562898 None:intergenic 60.0%
!! CGGCACAAGGACCGATTCGA+GGG - chr2_2:35562880-35562899 None:intergenic 60.0%
CCTCGAATCGGTCCTTGTGC+CGG + chr2_2:35562878-35562897 Msa0249230:intron 60.0%
CTCGAATCGGTCCTTGTGCC+GGG + chr2_2:35562879-35562898 Msa0249230:intron 60.0%
GGAGAAGGCGAGGGCGAAAG+TGG - chr2_2:35558676-35558695 None:intergenic 65.0%
!! AGGCGAAGGAGGGCTTTGGG+TGG + chr2_2:35559226-35559245 Msa0249230:intron 65.0%
TTGGAGGGGAAGGGAGGGGA+GGG - chr2_2:35559499-35559518 None:intergenic 65.0%
TTTGGAGGGGAAGGGAGGGG+AGG - chr2_2:35559500-35559519 None:intergenic 65.0%
GCGAGTTTGGAGGGGAAGGG+AGG - chr2_2:35559505-35559524 None:intergenic 65.0%
TAGGAGGGGAAGGGAGGGGA+GGG - chr2_2:35559729-35559748 None:intergenic 65.0%
TTAGGAGGGGAAGGGAGGGG+AGG - chr2_2:35559730-35559749 None:intergenic 65.0%
GAAGCACGGACGGACACGTG+TGG - chr2_2:35560269-35560288 None:intergenic 65.0%
ATGGGGGCCCCACAAGTGGA+CGG + chr2_2:35562843-35562862 Msa0249230:intron 65.0%
!! CCGGCACAAGGACCGATTCG+AGG - chr2_2:35562881-35562900 None:intergenic 65.0%
GGGAAGGGAGGGGAGGGCTT+TGG - chr2_2:35559493-35559512 None:intergenic 70.0%
GGGCCCCACAAGTGGACGGT+TGG + chr2_2:35562847-35562866 Msa0249230:intron 70.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 35558467 35564141 35558467 ID=Msa0249230;Name=Msa0249230
chr2_2 mRNA 35558467 35564141 35558467 ID=Msa0249230-mRNA-1;Parent=Msa0249230;Name=Msa0249230-mRNA-1;_AED=0.08;_eAED=0.08;_QI=108|0.71|0.87|0.87|0.71|0.87|8|349|329
chr2_2 exon 35558467 35558757 35558467 ID=Msa0249230-mRNA-1:exon:11461;Parent=Msa0249230-mRNA-1
chr2_2 exon 35558877 35558920 35558877 ID=Msa0249230-mRNA-1:exon:11462;Parent=Msa0249230-mRNA-1
chr2_2 exon 35560376 35560516 35560376 ID=Msa0249230-mRNA-1:exon:11463;Parent=Msa0249230-mRNA-1
chr2_2 exon 35560814 35560895 35560814 ID=Msa0249230-mRNA-1:exon:11464;Parent=Msa0249230-mRNA-1
chr2_2 exon 35561352 35561545 35561352 ID=Msa0249230-mRNA-1:exon:11465;Parent=Msa0249230-mRNA-1
chr2_2 exon 35561670 35561781 35561670 ID=Msa0249230-mRNA-1:exon:11466;Parent=Msa0249230-mRNA-1
chr2_2 exon 35563190 35563294 35563190 ID=Msa0249230-mRNA-1:exon:11467;Parent=Msa0249230-mRNA-1
chr2_2 exon 35563664 35564141 35563664 ID=Msa0249230-mRNA-1:exon:11468;Parent=Msa0249230-mRNA-1
chr2_2 five_prime_UTR 35558467 35558574 35558467 ID=Msa0249230-mRNA-1:five_prime_utr;Parent=Msa0249230-mRNA-1
chr2_2 CDS 35558575 35558757 35558575 ID=Msa0249230-mRNA-1:cds;Parent=Msa0249230-mRNA-1
chr2_2 CDS 35558877 35558920 35558877 ID=Msa0249230-mRNA-1:cds;Parent=Msa0249230-mRNA-1
chr2_2 CDS 35560376 35560516 35560376 ID=Msa0249230-mRNA-1:cds;Parent=Msa0249230-mRNA-1
chr2_2 CDS 35560814 35560895 35560814 ID=Msa0249230-mRNA-1:cds;Parent=Msa0249230-mRNA-1
chr2_2 CDS 35561352 35561545 35561352 ID=Msa0249230-mRNA-1:cds;Parent=Msa0249230-mRNA-1
chr2_2 CDS 35561670 35561781 35561670 ID=Msa0249230-mRNA-1:cds;Parent=Msa0249230-mRNA-1
chr2_2 CDS 35563190 35563294 35563190 ID=Msa0249230-mRNA-1:cds;Parent=Msa0249230-mRNA-1
chr2_2 CDS 35563664 35563792 35563664 ID=Msa0249230-mRNA-1:cds;Parent=Msa0249230-mRNA-1
chr2_2 three_prime_UTR 35563793 35564141 35563793 ID=Msa0249230-mRNA-1:three_prime_utr;Parent=Msa0249230-mRNA-1
Gene Sequence

>Msa0249230

ATGGCCGCTTCTGCTACTACCGCTGCTTCTCATTTCTTCCTTCACCCTCTTAATAATCAAATACAATTCCCCAAATGCCCTCACCTTTTTACTAAATCCCACTTTCGCCCTCGCCTTCTCCGCTCTCAAACCCAAAGGTTCAATATTCGTGCCTCCTCTGCTGTTGTTGTGGAGTCTCCGTCGATTAGTTTATCCATTTTGTTAACTGATACACAACTAAGGAACGAGTCAGCAATATACAGGTCTGGTTTCAAGTGTAAGAGATGTCAAAAATCGTACACTAGCAAAGACGGGTATCTGGATCTGACAGTGACTTCTGGGTTGAGAGATTATGTTGAAGTTCAACCAAATCGGACTGAACTTTTTAGGAGTCCCCTTGTTTCATTCCTATATGAAAGAGGTTGGCGTCAAAATTTCAGGCAAAGTGGCTTTCCTGGTCCTGATGAAGAGTTCAGAATGGCTCAAGAGTACTTTGAGCCTGCTAAAGGTGGTCTGATTGTCGATGTTAGCTGTGGAAGTGGTCTATTTTCCCGAAAATTTGCCAAATCTGGAACCTACTCTGGAGTAATTGCTTTAGATTTTTCTGAAAATATGCTCCGTCAATGCTACGATTTCATTAAGAAAGATGACACACTATCAACCACTAATCTTGCCCTTGTAAGAGCAGATGTTTCTAGGCTTCCCTTTGAATCAAGTTCAGTTGATGCGGTTCATGCTGGTGCTGCTTTGCATTGCTGGCCATCTCCCTCCAATGCTGTTGCCGAAATCACCCGTGTACTAAGAAGTGGTGGAGTATTTGTGGGAACCACTTTTCTTCGTTACACTTCATCAACTTCCTGGGTTGCACGCTTGTTCAGAGAGAGGTCTTCTCTAGGCTATGGCTACTTAACAGAAGAAGAAATTAAAGACCTTTGCACTTCATGTGGTCTTACAAATTACTCATGCAAAATTCAGAAGTCTTTTATTATGTTTACGGCTCAGAAGCCATAA

Protein sequence

>Msa0249230

MAASATTAASHFFLHPLNNQIQFPKCPHLFTKSHFRPRLLRSQTQRFNIRASSAVVVESPSISLSILLTDTQLRNESAIYRSGFKCKRCQKSYTSKDGYLDLTVTSGLRDYVEVQPNRTELFRSPLVSFLYERGWRQNFRQSGFPGPDEEFRMAQEYFEPAKGGLIVDVSCGSGLFSRKFAKSGTYSGVIALDFSENMLRQCYDFIKKDDTLSTTNLALVRADVSRLPFESSSVDAVHAGAALHCWPSPSNAVAEITRVLRSGGVFVGTTFLRYTSSTSWVARLFRERSSLGYGYLTEEEIKDLCTSCGLTNYSCKIQKSFIMFTAQKP*