AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1209470

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1209470 MtrunA17_Chr4g0058701 97.558 778 19 0 1 778 1 778 0.0 1589
Msa1209470 MtrunA17_Chr3g0117141 71.242 765 208 6 21 778 27 786 0.0 1132
Msa1209470 MtrunA17_Chr6g0449521 63.764 781 264 7 5 778 19 787 0.0 1013
Msa1209470 MtrunA17_Chr4g0064311 39.050 758 401 13 20 761 102 814 0.0 549
Msa1209470 MtrunA17_Chr1g0173521 40.130 770 397 15 20 770 62 786 0.0 542
Msa1209470 MtrunA17_Chr5g0447201 40.213 751 391 15 22 746 7 725 3.71e-179 532
Msa1209470 MtrunA17_Chr7g0267991 52.542 472 213 7 296 765 383 845 6.80e-168 506
Msa1209470 MtrunA17_Chr7g0267991 44.025 318 157 6 1 308 1 307 6.74e-72 252
Msa1209470 MtrunA17_Chr3g0116641 35.995 789 427 19 23 778 8 751 8.88e-165 494
Msa1209470 MtrunA17_Chr7g0257731 39.165 623 324 14 176 766 2 601 6.84e-140 426
Msa1209470 MtrunA17_Chr8g0380141 55.357 336 148 2 303 638 377 710 1.60e-134 415
Msa1209470 MtrunA17_Chr8g0380141 41.824 318 163 6 1 308 1 306 3.30e-70 244
Msa1209470 MtrunA17_Chr1g0201161 57.792 308 128 2 289 596 367 672 1.79e-123 392
Msa1209470 MtrunA17_Chr1g0201161 42.453 318 166 5 1 308 1 311 3.10e-70 248
Msa1209470 MtrunA17_Chr1g0201161 34.078 179 113 4 589 765 734 909 1.66e-25 113
Msa1209470 MtrunA17_Chr7g0270181 48.468 359 173 5 409 765 2 350 4.16e-114 350
Msa1209470 MtrunA17_Chr5g0427081 58.065 93 39 0 541 633 12 104 4.23e-30 116
Msa1209470 MtrunA17_Chr7g0257741 39.456 147 74 4 22 162 7 144 1.11e-24 100
Msa1209470 MtrunA17_Chr8g0380131 37.255 102 60 3 665 765 5 103 2.11e-14 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1209470 AT5G40390.1 59.418 791 300 7 1 778 1 783 0.0 983
Msa1209470 AT4G01970.1 43.938 833 367 17 25 765 38 862 0.0 676
Msa1209470 AT5G20250.3 41.953 758 382 15 20 757 5 724 0.0 559
Msa1209470 AT5G20250.1 41.953 758 382 15 20 757 5 724 0.0 559
Msa1209470 AT5G20250.2 41.953 758 382 15 20 757 5 724 0.0 559
Msa1209470 AT5G20250.4 41.953 758 382 15 20 757 100 819 0.0 559
Msa1209470 AT3G57520.1 39.031 784 405 16 22 764 7 758 0.0 548
Msa1209470 AT1G55740.1 39.523 754 405 13 22 755 7 729 1.71e-171 512
Msa1209470 AT3G57520.2 40.118 678 361 12 22 685 7 653 1.61e-169 504
Msa1209470 AT4G01970.2 47.590 498 236 10 288 765 417 909 9.44e-156 477
Msa1209470 AT4G01970.2 43.949 314 157 5 25 330 85 387 9.24e-71 250
Msa1209470 AT3G57520.3 42.059 573 289 11 22 580 7 550 1.88e-148 446

Find 192 sgRNAs with CRISPR-Local

Find 303 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGATTTAAAGGAGGAATTT+AGG 0.117893 8_1:+67940991 Msa1209470:CDS
GGAATTTAGGGGTTTATTAA+AGG 0.167276 8_1:+67941004 Msa1209470:CDS
CCTGATATAGTTGATAAATT+TGG 0.170065 8_1:+67940687 Msa1209470:CDS
TCAACACCTTTCATGCAAAT+TGG 0.176895 8_1:-67943379 None:intergenic
GCAAAACAATGCTCAAAATT+TGG 0.201512 8_1:+67942787 Msa1209470:CDS
GGATTTAAAGGAGGAATTTA+GGG 0.242835 8_1:+67940992 Msa1209470:CDS
TTTAATGAACGAAGCGATTA+AGG 0.244053 8_1:+67940614 Msa1209470:CDS
GCTTCGTTCATTAAAATATA+AGG 0.244616 8_1:-67940606 None:intergenic
TTGCTCCATTCAATGTCTTT+AGG 0.259060 8_1:-67943346 None:intergenic
ATAACAGTATAGTGGAGTTT+TGG 0.267213 8_1:+67943228 Msa1209470:intron
AAGGAGTATGATGAATCTTT+AGG 0.272087 8_1:+67940951 Msa1209470:CDS
TCCCATCCATAAGCTGTTAT+AGG 0.295635 8_1:-67942535 None:intergenic
GTCATTAGCTCGAAACTAAA+AGG 0.296547 8_1:-67943481 None:intergenic
TGTTTGGAGAAGAAGAATTT+TGG 0.297061 8_1:-67940215 None:intergenic
CCATCAATCATACAACTTAT+CGG 0.299644 8_1:-67943679 None:intergenic
GCCGGAGTCGGTGGTGGTTC+CGG 0.313171 8_1:+67941091 Msa1209470:CDS
TTGAAATCTGTTGGTATTGA+TGG 0.321054 8_1:+67941239 Msa1209470:CDS
TCTCCAAACACCACCGTTGC+TGG 0.336587 8_1:+67940228 Msa1209470:CDS
TGAGAGGTGCATGACGGATT+TGG 0.338428 8_1:+67941133 Msa1209470:CDS
TACAACCGACATGCCTCTTC+TGG 0.339765 8_1:-67941197 None:intergenic
ATGGGACTTGAGTGAGGATT+GGG 0.346557 8_1:-67940158 None:intergenic
TGGGTTTGTGAGGGATTTAA+AGG 0.350425 8_1:+67940980 Msa1209470:CDS
CAACACCTTTCATGCAAATT+GGG 0.350937 8_1:-67943378 None:intergenic
CTCCTTGAGGGTCCACCTTA+AGG 0.352532 8_1:-67940734 None:intergenic
AGTGAGGATTGGGTGGTTAT+TGG 0.355885 8_1:-67940148 None:intergenic
GCATATTCAGATTTAAACTA+TGG 0.355889 8_1:+67940334 Msa1209470:CDS
CCAAATTTATCAACTATATC+AGG 0.357607 8_1:-67940687 None:intergenic
GGAGTGAAAGAAGGTGTTAA+GGG 0.361752 8_1:+67940753 Msa1209470:CDS
CCGATAAGTTGTATGATTGA+TGG 0.367738 8_1:+67943679 Msa1209470:CDS
ACAAATAAAGAGTCTCTTGT+TGG 0.375238 8_1:-67942747 None:intergenic
GGTGTTAAGGGTTTAGTAGA+AGG 0.379904 8_1:+67940765 Msa1209470:CDS
CGGAGGTTCAATTATGTCAT+TGG 0.384333 8_1:+67943579 Msa1209470:CDS
CAACCAGCAACGGTGGTGTT+TGG 0.387982 8_1:-67940231 None:intergenic
AAGATAATGGAGATTGGAGT+TGG 0.391962 8_1:+67941164 Msa1209470:CDS
GGAGTGATGGTTATGTTTGA+TGG 0.392650 8_1:-67940177 None:intergenic
GCCGCTTCTCGTGCAATCTC+TGG 0.397589 8_1:+67942618 Msa1209470:CDS
CACCTTCTTTCACTCCTTGA+GGG 0.397852 8_1:-67940746 None:intergenic
AACGTAGGGACGTTGTTTAA+CGG 0.399851 8_1:-67940433 None:intergenic
TTGTTCTGCAAGGTTCTCAA+TGG 0.407213 8_1:+67943759 Msa1209470:CDS
GATGGGACTTGAGTGAGGAT+TGG 0.412194 8_1:-67940159 None:intergenic
CAAGTCCTAAAGACATTGAA+TGG 0.412198 8_1:+67943341 Msa1209470:CDS
TAGGTATGGGTGGGTTTGTG+AGG 0.413159 8_1:+67940970 Msa1209470:CDS
CATACAACTTATCGGCTTCT+CGG 0.415583 8_1:-67943671 None:intergenic
TCAATTCAATTTGCTCCAAT+CGG 0.425500 8_1:+67943535 Msa1209470:CDS
TCCGGCATCCCTTCAACATT+AGG 0.427596 8_1:-67941074 None:intergenic
AGGTATGGGTGGGTTTGTGA+GGG 0.427702 8_1:+67940971 Msa1209470:CDS
AGAATTGGGGTGAGAGGTCA+TGG 0.428267 8_1:+67943628 Msa1209470:CDS
GAGATGCTGTCAGAGGAATA+TGG 0.428417 8_1:+67941996 Msa1209470:CDS
TTTGGCGGTGGTGAAGATAA+TGG 0.430408 8_1:+67941151 Msa1209470:CDS
TGCAACCAATAGGTACCGTT+TGG 0.431398 8_1:-67942489 None:intergenic
TCCCTTGGCCTTGTTCTGCA+AGG 0.433474 8_1:+67943749 Msa1209470:CDS
CAAGAAGTTTGAATGTTCCT+AGG 0.437777 8_1:-67940650 None:intergenic
GTACCGTTTGGATCCCCAGC+TGG 0.439136 8_1:-67942477 None:intergenic
ACCGTTGCTGGTTGTTTCGT+CGG 0.446457 8_1:+67940240 Msa1209470:CDS
TGCTGCTTATAACAGTATAG+TGG 0.447051 8_1:+67943220 Msa1209470:intron
GGGATCCAAACGGTACCTAT+TGG 0.449564 8_1:+67942484 Msa1209470:CDS
CATTCTCATTTGAAATCTGT+TGG 0.452232 8_1:+67941230 Msa1209470:CDS
ACCAACTCGTCCAAGTGAAA+TGG 0.458370 8_1:-67942147 None:intergenic
GTTCCGGCGAAATTGTCACC+TGG 0.461142 8_1:+67941107 Msa1209470:CDS
AGGAGTGAAAGAAGGTGTTA+AGG 0.465288 8_1:+67940752 Msa1209470:CDS
TTTGGTGCACGGACCCAGCT+GGG 0.466953 8_1:+67942463 Msa1209470:CDS
ACAGAATCGCTAACATATAT+CGG 0.467807 8_1:-67942645 None:intergenic
CTTCCCAACATTTGTTCACC+AGG 0.470201 8_1:-67940897 None:intergenic
CAGAACAAGGCCAAGGGACA+TGG 0.470570 8_1:-67943744 None:intergenic
TCATCAATGATTACAAAACT+TGG 0.472983 8_1:-67940798 None:intergenic
AACTATGGTGGAGCACTCAC+TGG 0.477809 8_1:+67940349 Msa1209470:CDS
GTTAAGGGTTTAGTAGAAGG+TGG 0.483094 8_1:+67940768 Msa1209470:CDS
GCCGGAACCACCACCGACTC+CGG 0.483490 8_1:-67941092 None:intergenic
CAGGGCACCACCCTCCTCCT+TGG 0.486184 8_1:-67943264 None:intergenic
GTATGATGAATCTTTAGGTA+TGG 0.486382 8_1:+67940956 Msa1209470:CDS
GTGACATCCTTGCAACCAAT+AGG 0.487759 8_1:-67942499 None:intergenic
TATGATGAATCTTTAGGTAT+GGG 0.490779 8_1:+67940957 Msa1209470:CDS
TGCAACGATTTCATGTTCCT+TGG 0.491430 8_1:+67942116 Msa1209470:CDS
AAGACATTGAATGGAGCAAA+GGG 0.491837 8_1:+67943350 Msa1209470:CDS
TTTGTGAGGTGGTGGAGTGA+TGG 0.492340 8_1:-67940190 None:intergenic
TATACCTGGTGAACAAATGT+TGG 0.493359 8_1:+67940893 Msa1209470:CDS
ACCATTTCACTTGGACGAGT+TGG 0.498213 8_1:+67942146 Msa1209470:CDS
TCAATTTGCTCCAATCGGAT+TGG 0.498694 8_1:+67943540 Msa1209470:CDS
ACACCTTCTTTCACTCCTTG+AGG 0.501161 8_1:-67940747 None:intergenic
TTCCGGCGAAATTGTCACCT+GGG 0.502369 8_1:+67941108 Msa1209470:CDS
ATACCTGGTGAACAAATGTT+GGG 0.502624 8_1:+67940894 Msa1209470:CDS
TTTGTAGACCCTTTACATGA+TGG 0.502816 8_1:+67942765 Msa1209470:CDS
TGCCTATAACAGCTTATGGA+TGG 0.503918 8_1:+67942533 Msa1209470:CDS
GAGTGATGGTTATGTTTGAT+GGG 0.503927 8_1:-67940176 None:intergenic
AATGGAGATTGGAGTTGGAT+TGG 0.504103 8_1:+67941169 Msa1209470:CDS
GGGATTAGACCTAATGTTGA+AGG 0.504892 8_1:+67941065 Msa1209470:CDS
ATCGTTGCACTGTTGCATAC+TGG 0.507352 8_1:-67942102 None:intergenic
TGAGAGGTCATGGAGAAATG+AGG 0.508249 8_1:+67943638 Msa1209470:CDS
TGGTGGGATGGGAATTGGCA+TGG 0.509869 8_1:-67940098 None:intergenic
CTTCAAGTTACTCAAGAAGC+TGG 0.516648 8_1:+67942680 Msa1209470:CDS
AGGGATGCCGGAGTCGGTGG+TGG 0.517467 8_1:+67941085 Msa1209470:CDS
GTGGTGAAGATAATGGAGAT+TGG 0.519138 8_1:+67941158 Msa1209470:CDS
ATAAATTTGGATGGTGTACA+TGG 0.521845 8_1:+67940700 Msa1209470:CDS
AGTTTGAATTGTTCTATACC+TGG 0.521967 8_1:+67940879 Msa1209470:CDS
ACCTAATGTTGAAGGGATGC+CGG 0.522847 8_1:+67941073 Msa1209470:CDS
TGGTGGAGCACTCACTGGAC+AGG 0.523576 8_1:+67940354 Msa1209470:CDS
CTATTCAATTGCCAAGGAGG+AGG 0.523965 8_1:+67943253 Msa1209470:CDS
GGTGGGATGGGAATTGGCAT+GGG 0.524201 8_1:-67940097 None:intergenic
ATTGTGCCTATAACAGCTTA+TGG 0.524942 8_1:+67942529 Msa1209470:CDS
CAATGACATAATTGAACCTC+CGG 0.526517 8_1:-67943578 None:intergenic
GAGGCATGTCGGTTGTATGA+TGG 0.527459 8_1:+67941203 Msa1209470:CDS
ATGAATCTTTAGGTATGGGT+GGG 0.527854 8_1:+67940961 Msa1209470:CDS
GATTGAAACATGTCCCAATC+TGG 0.528396 8_1:-67942570 None:intergenic
GCTTCTCGTGCAATCTCTGG+TGG 0.532644 8_1:+67942621 Msa1209470:CDS
GAGAGGTCATGGAGAAATGA+GGG 0.532941 8_1:+67943639 Msa1209470:CDS
TAGTTTAAATCTGAATATGC+TGG 0.534012 8_1:-67940331 None:intergenic
GAAACTATGTGTCGGCTGCT+TGG 0.534850 8_1:-67940279 None:intergenic
GTCATGCACCTCTCAGCCCC+AGG 0.535544 8_1:-67941125 None:intergenic
GATGAATCTTTAGGTATGGG+TGG 0.539180 8_1:+67940960 Msa1209470:CDS
GGTGGTTAAGCTTGGCGCCA+TGG 0.539230 8_1:-67940055 None:intergenic
GTGGACATTTGCATGGAAAG+TGG 0.540244 8_1:+67940522 Msa1209470:CDS
GCCTTTGAAATGTTTCCTCA+CGG 0.541118 8_1:-67942066 None:intergenic
ATATATGTTAGCGATTCTGT+TGG 0.541338 8_1:+67942648 Msa1209470:CDS
ATTTAGGGGTTTATTAAAGG+AGG 0.543379 8_1:+67941007 Msa1209470:CDS
TGGTAATGCTCCATGTCCCT+TGG 0.545376 8_1:+67943734 Msa1209470:CDS
GGTACAGAAACCATTTCACT+TGG 0.545490 8_1:+67942137 Msa1209470:CDS
TACCGTTTGGATCCCCAGCT+GGG 0.547039 8_1:-67942476 None:intergenic
TTCAGAGCTTGTCTTCAACC+AGG 0.549536 8_1:+67940483 Msa1209470:CDS
AGCCGACACATAGTTTCCAT+TGG 0.550893 8_1:+67940285 Msa1209470:CDS
GATTTAAAGGAGGAATTTAG+GGG 0.551825 8_1:+67940993 Msa1209470:CDS
TACCTTAAGGTGGACCCTCA+AGG 0.552311 8_1:+67940732 Msa1209470:CDS
TTAAGGGTTTAGTAGAAGGT+GGG 0.552737 8_1:+67940769 Msa1209470:CDS
ACCAGAGATTGCACGAGAAG+CGG 0.555134 8_1:-67942619 None:intergenic
AAAGACATTGAATGGAGCAA+AGG 0.557425 8_1:+67943349 Msa1209470:CDS
AGCATGTTAACCAATCCGAT+TGG 0.559198 8_1:-67943550 None:intergenic
AACGGTACCTATTGGTTGCA+AGG 0.559469 8_1:+67942492 Msa1209470:CDS
TCTTGAGTAACTTGAAGTTG+TGG 0.560897 8_1:-67942674 None:intergenic
CACCGCAAAATCGATCCATC+CGG 0.565004 8_1:-67942708 None:intergenic
TTGTAATCATTGATGATGGT+TGG 0.565983 8_1:+67940805 Msa1209470:CDS
GACCCAGCTGGGGATCCAAA+CGG 0.566099 8_1:+67942474 Msa1209470:CDS
GATTCCGTTGAGGTGGCCAA+TGG 0.571489 8_1:-67940301 None:intergenic
TTGGGTCTATTCAATTGCCA+AGG 0.572201 8_1:+67943247 Msa1209470:CDS
TATTCAGATTTAAACTATGG+TGG 0.572892 8_1:+67940337 Msa1209470:CDS
GCCTATAACAGCTTATGGAT+GGG 0.572937 8_1:+67942534 Msa1209470:CDS
AGGAAACATTTCAAAGGCAA+TGG 0.572988 8_1:+67942071 Msa1209470:CDS
GGACTTGAGTGAGGATTGGG+TGG 0.573160 8_1:-67940155 None:intergenic
GCCCCAGGTGACAATTTCGC+CGG 0.575474 8_1:-67941110 None:intergenic
GACCCTCAAGGAGTGAAAGA+AGG 0.577697 8_1:+67940744 Msa1209470:CDS
GTTTCCATTGGCCACCTCAA+CGG 0.578401 8_1:+67940297 Msa1209470:CDS
AATGACAGTTTCTCCTGTGA+TGG 0.579467 8_1:+67943498 Msa1209470:CDS
TCAATGATTACAAAACTTGG+AGG 0.580200 8_1:-67940795 None:intergenic
TGTTTGATGGGACTTGAGTG+AGG 0.584642 8_1:-67940164 None:intergenic
ATTTGATTATGATGATAGCA+TGG 0.586434 8_1:+67943714 Msa1209470:CDS
TAACAACGTGGACATTTGCA+TGG 0.587528 8_1:+67940515 Msa1209470:CDS
TGAAGGGATGCCGGAGTCGG+TGG 0.587896 8_1:+67941082 Msa1209470:CDS
CTGAAAGAACCTTCGATGAG+TGG 0.589033 8_1:-67940465 None:intergenic
TTGGTTAACATGCTCAACTC+CGG 0.595231 8_1:+67943559 Msa1209470:CDS
GTTTGTGAGGGATTTAAAGG+AGG 0.595260 8_1:+67940983 Msa1209470:CDS
GCTTGCAAAAGCGTACTACA+AGG 0.596101 8_1:+67942031 Msa1209470:CDS
TTGGTGCACGGACCCAGCTG+GGG 0.596662 8_1:+67942464 Msa1209470:CDS
GTGCATGACGGATTTGGCGG+TGG 0.598460 8_1:+67941139 Msa1209470:CDS
TGTTGAAGGGATGCCGGAGT+CGG 0.599281 8_1:+67941079 Msa1209470:CDS
ATTGAGAACCTTGCAGAACA+AGG 0.602231 8_1:-67943757 None:intergenic
CTGGTGAACAAATGTTGGGA+AGG 0.602925 8_1:+67940898 Msa1209470:CDS
GGATTGGGTGGTTATTGGCG+AGG 0.609307 8_1:-67940143 None:intergenic
TGGACATTTGCATGGAAAGT+GGG 0.609974 8_1:+67940523 Msa1209470:CDS
CTGGTGAGAATTGGGGTGAG+AGG 0.613729 8_1:+67943622 Msa1209470:CDS
GGTCTATTCAATTGCCAAGG+AGG 0.616757 8_1:+67943250 Msa1209470:CDS
TATTCAATTGCCAAGGAGGA+GGG 0.618004 8_1:+67943254 Msa1209470:CDS
GAGGTGCATGACGGATTTGG+CGG 0.618063 8_1:+67941136 Msa1209470:CDS
TCCGTGAGGAAACATTTCAA+AGG 0.621108 8_1:+67942065 Msa1209470:CDS
TCCGGCGAAATTGTCACCTG+GGG 0.621421 8_1:+67941109 Msa1209470:CDS
GTTAACATGCTCAACTCCGG+AGG 0.626212 8_1:+67943562 Msa1209470:CDS
GCCGACGAAACAACCAGCAA+CGG 0.633768 8_1:-67940241 None:intergenic
GGATTAGACCTAATGTTGAA+GGG 0.633952 8_1:+67941066 Msa1209470:CDS
TGGATTGGTGAAGCCAGAAG+AGG 0.637487 8_1:+67941184 Msa1209470:CDS
GTGAAATGGTTTCTGTACCA+AGG 0.638102 8_1:-67942133 None:intergenic
AGTGGTAAAAGAAGAACGTA+GGG 0.639687 8_1:-67940447 None:intergenic
GGTTCTAGAGATGCTGTCAG+AGG 0.645061 8_1:+67941989 Msa1209470:intron
TCAATTGCCAAGGAGGAGGG+TGG 0.646161 8_1:+67943257 Msa1209470:CDS
AACCTTGCAGAACAAGGCCA+AGG 0.647712 8_1:-67943751 None:intergenic
ACCTTGCAGAACAAGGCCAA+GGG 0.647834 8_1:-67943750 None:intergenic
AATTGTCACCTGGGGCTGAG+AGG 0.650965 8_1:+67941117 Msa1209470:CDS
GGTTGATTCAACAACACGTG+TGG 0.655311 8_1:-67940547 None:intergenic
ATATAGTTGATAAATTTGGA+TGG 0.656069 8_1:+67940691 Msa1209470:CDS
ACTCACTGGACAGGAACCAA+AGG 0.659950 8_1:+67940363 Msa1209470:CDS
TAAATTTGGATGGTGTACAT+GGG 0.660395 8_1:+67940701 Msa1209470:CDS
TGGGGCTGAGAGGTGCATGA+CGG 0.661779 8_1:+67941127 Msa1209470:CDS
TGAAGCCAGAAGAGGCATGT+CGG 0.661984 8_1:+67941192 Msa1209470:CDS
GAGTGGTAAAAGAAGAACGT+AGG 0.662123 8_1:-67940448 None:intergenic
GAAGTTTGAATGTTCCTAGG+TGG 0.665970 8_1:-67940647 None:intergenic
GACGAAACAACCAGCAACGG+TGG 0.666404 8_1:-67940238 None:intergenic
TATTAAAGGAGGTTTATGTG+TGG 0.666878 8_1:+67941018 Msa1209470:CDS
TGAATCTGATTCCGTTGAGG+TGG 0.668028 8_1:-67940308 None:intergenic
CACAGAGTGCGAAAACTCAG+AGG 0.690041 8_1:-67943308 None:intergenic
TGGTGAATCTGATTCCGTTG+AGG 0.696113 8_1:-67940311 None:intergenic
AAGGTTGTTAGAGACCACCT+AGG 0.723577 8_1:+67940633 Msa1209470:CDS
GGCCAATGGAAACTATGTGT+CGG 0.724946 8_1:-67940287 None:intergenic
ATGCTGTCAGAGGAATATGG+TGG 0.725576 8_1:+67941999 Msa1209470:CDS
TTGGTTGCAAGGATGTCACA+TGG 0.743481 8_1:+67942503 Msa1209470:CDS
AGGCACTAACTGAATCCGTG+AGG 0.754937 8_1:+67942051 Msa1209470:CDS
AGGACAAAACAATAACAACG+TGG 0.807452 8_1:+67940503 Msa1209470:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATATTTAAAATTTAATATA+AGG + chr8_1:67941415-67941434 Msa1209470:intron 0.0%
!! TGAAGAAAATAAAAAATTTA+AGG + chr8_1:67940932-67940951 Msa1209470:CDS 10.0%
!! AAAAATATATGTTATGATTT+AGG - chr8_1:67941317-67941336 None:intergenic 10.0%
!!! AAATCATAACATATATTTTT+TGG + chr8_1:67941317-67941336 Msa1209470:intron 10.0%
!! AAATTTAATATATAAGGATT+AGG + chr8_1:67941451-67941470 Msa1209470:intron 10.0%
!! AAATTTAATTGGTATATATT+TGG - chr8_1:67941536-67941555 None:intergenic 10.0%
!! CATATGCAAAAATATAATTT+AGG + chr8_1:67941378-67941397 Msa1209470:intron 15.0%
!! CATCACATAAAAAATTTAAT+TGG - chr8_1:67941547-67941566 None:intergenic 15.0%
!! AAAAAATACAAACTTATTGT+TGG - chr8_1:67941827-67941846 None:intergenic 15.0%
!! TAAATTTAACATATACAAGT+TGG + chr8_1:67941880-67941899 Msa1209470:intron 15.0%
!!! TTTCTAGTATTAAAAAATCA+GGG - chr8_1:67941909-67941928 None:intergenic 15.0%
!!! ATTTCTAGTATTAAAAAATC+AGG - chr8_1:67941910-67941929 None:intergenic 15.0%
!!! AATGTATAAACATGTTTTGA+AGG - chr8_1:67940571-67940590 None:intergenic 20.0%
!!! ATATAGTTGATAAATTTGGA+TGG + chr8_1:67940691-67940710 Msa1209470:CDS 20.0%
!!! TTTTGCATATGTTATGATAT+AGG - chr8_1:67941369-67941388 None:intergenic 20.0%
!! ATGCAAAAATATAATTTAGG+CGG + chr8_1:67941381-67941400 Msa1209470:intron 20.0%
!!! GATGAAAGTATTTTTTATCT+GGG + chr8_1:67941585-67941604 Msa1209470:intron 20.0%
!!! TGTATTTTTTTAGCAATTAG+AGG + chr8_1:67941837-67941856 Msa1209470:intron 20.0%
!!! GTATTTTTTTAGCAATTAGA+GGG + chr8_1:67941838-67941857 Msa1209470:intron 20.0%
!!! AAAAATAGAGTATTAACTTC+TGG - chr8_1:67941956-67941975 None:intergenic 20.0%
!!! TATCATAAAATGATTTTTGC+AGG + chr8_1:67942432-67942451 Msa1209470:intron 20.0%
!!! AAATTTTATACAACCAGATT+GGG + chr8_1:67942557-67942576 Msa1209470:CDS 20.0%
!! AATTTGAAGGATTGAATTAA+CGG - chr8_1:67942847-67942866 None:intergenic 20.0%
!!! TTACTATAGTGATATTTTGA+TGG + chr8_1:67942965-67942984 Msa1209470:intron 20.0%
!!! CAATTTTCATATTGTTACTT+CGG + chr8_1:67943158-67943177 Msa1209470:intron 20.0%
!!! GCAAATTGAATTGAATTTTT+CGG - chr8_1:67943529-67943548 None:intergenic 20.0%
!!! GGAAAGATTTGTTTCTTTTA+CGG - chr8_1:67940079-67940098 None:intergenic 25.0%
!!! TGTTGAGTTTTCTAGTTTTA+TGG - chr8_1:67940121-67940140 None:intergenic 25.0%
! TAGTTTAAATCTGAATATGC+TGG - chr8_1:67940334-67940353 None:intergenic 25.0%
! GCATATTCAGATTTAAACTA+TGG + chr8_1:67940334-67940353 Msa1209470:CDS 25.0%
! TATTCAGATTTAAACTATGG+TGG + chr8_1:67940337-67940356 Msa1209470:CDS 25.0%
! GCTTCGTTCATTAAAATATA+AGG - chr8_1:67940609-67940628 None:intergenic 25.0%
! CCAAATTTATCAACTATATC+AGG - chr8_1:67940690-67940709 None:intergenic 25.0%
!!! CCTGATATAGTTGATAAATT+TGG + chr8_1:67940687-67940706 Msa1209470:CDS 25.0%
! TCATCAATGATTACAAAACT+TGG - chr8_1:67940801-67940820 None:intergenic 25.0%
!!! AGTTTTGTAATCATTGATGA+TGG + chr8_1:67940801-67940820 Msa1209470:CDS 25.0%
!!! GATGATGAAGATTTTTTGAA+CGG + chr8_1:67940843-67940862 Msa1209470:CDS 25.0%
! TATGATGAATCTTTAGGTAT+GGG + chr8_1:67940957-67940976 Msa1209470:CDS 25.0%
! GTTATGATTTAGGCAAAATA+TGG - chr8_1:67941307-67941326 None:intergenic 25.0%
! AATATATAAGGATTAGGACT+AGG + chr8_1:67941457-67941476 Msa1209470:intron 25.0%
! GATGTAAATTATTCTTGACA+AGG + chr8_1:67941563-67941582 Msa1209470:intron 25.0%
!!! GGATGAAAGTATTTTTTATC+TGG + chr8_1:67941584-67941603 Msa1209470:intron 25.0%
!! TTAACCGATTAAAAGTTGAT+TGG + chr8_1:67941729-67941748 Msa1209470:intron 25.0%
! AATTTAGAAAGTTGCTCTTT+AGG - chr8_1:67941866-67941885 None:intergenic 25.0%
!! GAAATTTTATACAACCAGAT+TGG + chr8_1:67942556-67942575 Msa1209470:CDS 25.0%
!!! TTGCTATTTCGTAAATTTGA+AGG - chr8_1:67942860-67942879 None:intergenic 25.0%
!!! CATTTCTTTTATTGATTCGA+TGG + chr8_1:67942938-67942957 Msa1209470:intron 25.0%
! TACATGTTTCAAAGATTAAG+AGG - chr8_1:67943114-67943133 None:intergenic 25.0%
! ATTTGATTATGATGATAGCA+TGG + chr8_1:67943714-67943733 Msa1209470:CDS 25.0%
!! AAGATTTGTTTCTTTTACGG+TGG - chr8_1:67940076-67940095 None:intergenic 30.0%
!!! GAGTTTTCTAGTTTTATGGT+GGG - chr8_1:67940117-67940136 None:intergenic 30.0%
!!! TGAGTTTTCTAGTTTTATGG+TGG - chr8_1:67940118-67940137 None:intergenic 30.0%
! TGTTTGGAGAAGAAGAATTT+TGG - chr8_1:67940218-67940237 None:intergenic 30.0%
TTTAATGAACGAAGCGATTA+AGG + chr8_1:67940614-67940633 Msa1209470:CDS 30.0%
ATAAATTTGGATGGTGTACA+TGG + chr8_1:67940700-67940719 Msa1209470:CDS 30.0%
TAAATTTGGATGGTGTACAT+GGG + chr8_1:67940701-67940720 Msa1209470:CDS 30.0%
TCAATGATTACAAAACTTGG+AGG - chr8_1:67940798-67940817 None:intergenic 30.0%
!! TTGTAATCATTGATGATGGT+TGG + chr8_1:67940805-67940824 Msa1209470:CDS 30.0%
AGTTTGAATTGTTCTATACC+TGG + chr8_1:67940879-67940898 Msa1209470:CDS 30.0%
! AAGGAGTATGATGAATCTTT+AGG + chr8_1:67940951-67940970 Msa1209470:CDS 30.0%
GTATGATGAATCTTTAGGTA+TGG + chr8_1:67940956-67940975 Msa1209470:CDS 30.0%
GGATTTAAAGGAGGAATTTA+GGG + chr8_1:67940992-67941011 Msa1209470:CDS 30.0%
GATTTAAAGGAGGAATTTAG+GGG + chr8_1:67940993-67941012 Msa1209470:CDS 30.0%
GGAATTTAGGGGTTTATTAA+AGG + chr8_1:67941004-67941023 Msa1209470:CDS 30.0%
ATTTAGGGGTTTATTAAAGG+AGG + chr8_1:67941007-67941026 Msa1209470:CDS 30.0%
TATTAAAGGAGGTTTATGTG+TGG + chr8_1:67941018-67941037 Msa1209470:CDS 30.0%
! CATTCTCATTTGAAATCTGT+TGG + chr8_1:67941230-67941249 Msa1209470:CDS 30.0%
! TTGAAATCTGTTGGTATTGA+TGG + chr8_1:67941239-67941258 Msa1209470:CDS 30.0%
! CCTTCCAATCAACTTTTAAT+CGG - chr8_1:67941736-67941755 None:intergenic 30.0%
!! AACTACCGTTAGCTTTAAAA+CGG - chr8_1:67941789-67941808 None:intergenic 30.0%
!!! CTATTTTTGTTGCATATGAC+AGG + chr8_1:67941968-67941987 Msa1209470:intron 30.0%
!! TTTACCATATCGATTTCAAG+TGG - chr8_1:67942201-67942220 None:intergenic 30.0%
! GTTACAAAGGTTAAGGTTTT+TGG - chr8_1:67942238-67942257 None:intergenic 30.0%
CACAAACACATATCAAACAT+CGG - chr8_1:67942287-67942306 None:intergenic 30.0%
! TTTTTGCAGGTGATGATTTT+TGG + chr8_1:67942445-67942464 Msa1209470:intron 30.0%
ACAGAATCGCTAACATATAT+CGG - chr8_1:67942648-67942667 None:intergenic 30.0%
ATATATGTTAGCGATTCTGT+TGG + chr8_1:67942648-67942667 Msa1209470:CDS 30.0%
ACAAATAAAGAGTCTCTTGT+TGG - chr8_1:67942750-67942769 None:intergenic 30.0%
!! TTGTTTTGCCATCATGTAAA+GGG - chr8_1:67942776-67942795 None:intergenic 30.0%
!! ATTGTTTTGCCATCATGTAA+AGG - chr8_1:67942777-67942796 None:intergenic 30.0%
GCAAAACAATGCTCAAAATT+TGG + chr8_1:67942787-67942806 Msa1209470:CDS 30.0%
AAGGATTGAATTAACGGAAT+AGG - chr8_1:67942841-67942860 None:intergenic 30.0%
!! AAGAGACTAAATTGATTCGA+TGG + chr8_1:67943019-67943038 Msa1209470:intron 30.0%
CTTAAGTCCTCAAAATTCTA+AGG - chr8_1:67943081-67943100 None:intergenic 30.0%
!! ATAACAGTATAGTGGAGTTT+TGG + chr8_1:67943228-67943247 Msa1209470:intron 30.0%
!! TAACAGTATAGTGGAGTTTT+GGG + chr8_1:67943229-67943248 Msa1209470:intron 30.0%
!! TTTTGTTTCTTCTAGTCACA+GGG - chr8_1:67943285-67943304 None:intergenic 30.0%
AAAAACCCAATTTGCATGAA+AGG + chr8_1:67943373-67943392 Msa1209470:CDS 30.0%
! TCAATTCAATTTGCTCCAAT+CGG + chr8_1:67943535-67943554 Msa1209470:CDS 30.0%
GTTTGATGAAGAGAAAAATC+TGG + chr8_1:67943603-67943622 Msa1209470:CDS 30.0%
AGAAAAATCTGGTGAGAATT+GGG + chr8_1:67943614-67943633 Msa1209470:CDS 30.0%
CCATCAATCATACAACTTAT+CGG - chr8_1:67943682-67943701 None:intergenic 30.0%
!!! TTCTAGTTTTATGGTGGGAT+GGG - chr8_1:67940112-67940131 None:intergenic 35.0%
!!! TTTCTAGTTTTATGGTGGGA+TGG - chr8_1:67940113-67940132 None:intergenic 35.0%
GAGTGATGGTTATGTTTGAT+GGG - chr8_1:67940179-67940198 None:intergenic 35.0%
!!! GAAGAATTTTGGTGTTTGTG+AGG - chr8_1:67940207-67940226 None:intergenic 35.0%
! GTTTTCTATGTCATTGCCTT+TGG - chr8_1:67940382-67940401 None:intergenic 35.0%
AGTGGTAAAAGAAGAACGTA+GGG - chr8_1:67940450-67940469 None:intergenic 35.0%
!! ACGTTGTTATTGTTTTGTCC+TGG - chr8_1:67940504-67940523 None:intergenic 35.0%
AGGACAAAACAATAACAACG+TGG + chr8_1:67940503-67940522 Msa1209470:CDS 35.0%
CAAGAAGTTTGAATGTTCCT+AGG - chr8_1:67940653-67940672 None:intergenic 35.0%
! ATGGGATGCATTTTACCTTA+AGG + chr8_1:67940719-67940738 Msa1209470:CDS 35.0%
TTAAGGGTTTAGTAGAAGGT+GGG + chr8_1:67940769-67940788 Msa1209470:CDS 35.0%
!!! GATGAAGATTTTTTGAACGG+TGG + chr8_1:67940846-67940865 Msa1209470:CDS 35.0%
TATACCTGGTGAACAAATGT+TGG + chr8_1:67940893-67940912 Msa1209470:CDS 35.0%
ATACCTGGTGAACAAATGTT+GGG + chr8_1:67940894-67940913 Msa1209470:CDS 35.0%
ATGAATCTTTAGGTATGGGT+GGG + chr8_1:67940961-67940980 Msa1209470:CDS 35.0%
GGGATTTAAAGGAGGAATTT+AGG + chr8_1:67940991-67941010 Msa1209470:CDS 35.0%
GGATTAGACCTAATGTTGAA+GGG + chr8_1:67941066-67941085 Msa1209470:CDS 35.0%
!! AAGATAATGGAGATTGGAGT+TGG + chr8_1:67941164-67941183 Msa1209470:CDS 35.0%
ATCTCATGCACTTTGAATTG+AGG + chr8_1:67941658-67941677 Msa1209470:intron 35.0%
TGAATTGAGGAAAATGCATC+CGG + chr8_1:67941671-67941690 Msa1209470:intron 35.0%
TCTAACAGTATTAACACCAC+CGG - chr8_1:67941693-67941712 None:intergenic 35.0%
! CCGATTAAAAGTTGATTGGA+AGG + chr8_1:67941733-67941752 Msa1209470:intron 35.0%
!!! AACCACCGTTTTAAAGCTAA+CGG + chr8_1:67941781-67941800 Msa1209470:intron 35.0%
! AACTTATTGTTGGTTGAGTG+CGG - chr8_1:67941817-67941836 None:intergenic 35.0%
AGGAAACATTTCAAAGGCAA+TGG + chr8_1:67942071-67942090 Msa1209470:CDS 35.0%
ACAACCACTTGAAATCGATA+TGG + chr8_1:67942194-67942213 Msa1209470:intron 35.0%
! ACATCTTCCATTAGAAGTGT+GGG - chr8_1:67942262-67942281 None:intergenic 35.0%
!! TATGAAGTACTGACATGACA+CGG - chr8_1:67942375-67942394 None:intergenic 35.0%
ATTGTGCCTATAACAGCTTA+TGG + chr8_1:67942529-67942548 Msa1209470:CDS 35.0%
TCTTGAGTAACTTGAAGTTG+TGG - chr8_1:67942677-67942696 None:intergenic 35.0%
TTTGTAGACCCTTTACATGA+TGG + chr8_1:67942765-67942784 Msa1209470:CDS 35.0%
! TCTCGATCCTTAGAATTTTG+AGG + chr8_1:67943071-67943090 Msa1209470:intron 35.0%
TTGAAAAGACACCTAATCTG+AGG - chr8_1:67943141-67943160 None:intergenic 35.0%
! TGCTGCTTATAACAGTATAG+TGG + chr8_1:67943220-67943239 Msa1209470:intron 35.0%
!! CTTTTGTTTCTTCTAGTCAC+AGG - chr8_1:67943286-67943305 None:intergenic 35.0%
CAAGTCCTAAAGACATTGAA+TGG + chr8_1:67943341-67943360 Msa1209470:CDS 35.0%
TTGCTCCATTCAATGTCTTT+AGG - chr8_1:67943349-67943368 None:intergenic 35.0%
AAAGACATTGAATGGAGCAA+AGG + chr8_1:67943349-67943368 Msa1209470:CDS 35.0%
AAGACATTGAATGGAGCAAA+GGG + chr8_1:67943350-67943369 Msa1209470:CDS 35.0%
CAACACCTTTCATGCAAATT+GGG - chr8_1:67943381-67943400 None:intergenic 35.0%
TCAACACCTTTCATGCAAAT+TGG - chr8_1:67943382-67943401 None:intergenic 35.0%
GTCATTAGCTCGAAACTAAA+AGG - chr8_1:67943484-67943503 None:intergenic 35.0%
CAATGACATAATTGAACCTC+CGG - chr8_1:67943581-67943600 None:intergenic 35.0%
GAGAAAAATCTGGTGAGAAT+TGG + chr8_1:67943613-67943632 Msa1209470:CDS 35.0%
GAAAAATCTGGTGAGAATTG+GGG + chr8_1:67943615-67943634 Msa1209470:CDS 35.0%
CCGATAAGTTGTATGATTGA+TGG + chr8_1:67943679-67943698 Msa1209470:CDS 35.0%
! TCTTTTACGGTGGTTAAGCT+TGG - chr8_1:67940066-67940085 None:intergenic 40.0%
!! TTTTATGGTGGGATGGGAAT+TGG - chr8_1:67940106-67940125 None:intergenic 40.0%
GGAGTGATGGTTATGTTTGA+TGG - chr8_1:67940180-67940199 None:intergenic 40.0%
!!! GAATTTTGGTGTTTGTGAGG+TGG - chr8_1:67940204-67940223 None:intergenic 40.0%
AACGTAGGGACGTTGTTTAA+CGG - chr8_1:67940436-67940455 None:intergenic 40.0%
GAGTGGTAAAAGAAGAACGT+AGG - chr8_1:67940451-67940470 None:intergenic 40.0%
! CTTCTTTTACCACTCATCGA+AGG + chr8_1:67940456-67940475 Msa1209470:CDS 40.0%
TAACAACGTGGACATTTGCA+TGG + chr8_1:67940515-67940534 Msa1209470:CDS 40.0%
TGGACATTTGCATGGAAAGT+GGG + chr8_1:67940523-67940542 Msa1209470:CDS 40.0%
GAAGTTTGAATGTTCCTAGG+TGG - chr8_1:67940650-67940669 None:intergenic 40.0%
! GGATGCATTTTACCTTAAGG+TGG + chr8_1:67940722-67940741 Msa1209470:CDS 40.0%
!! AGGAGTGAAAGAAGGTGTTA+AGG + chr8_1:67940752-67940771 Msa1209470:CDS 40.0%
!! GGAGTGAAAGAAGGTGTTAA+GGG + chr8_1:67940753-67940772 Msa1209470:CDS 40.0%
GGTGTTAAGGGTTTAGTAGA+AGG + chr8_1:67940765-67940784 Msa1209470:CDS 40.0%
GTTAAGGGTTTAGTAGAAGG+TGG + chr8_1:67940768-67940787 Msa1209470:CDS 40.0%
GATGAATCTTTAGGTATGGG+TGG + chr8_1:67940960-67940979 Msa1209470:CDS 40.0%
TGGGTTTGTGAGGGATTTAA+AGG + chr8_1:67940980-67940999 Msa1209470:CDS 40.0%
GTTTGTGAGGGATTTAAAGG+AGG + chr8_1:67940983-67941002 Msa1209470:CDS 40.0%
!! TATGTGTGGCATGCTTTTTG+TGG + chr8_1:67941032-67941051 Msa1209470:CDS 40.0%
!! ATGTGTGGCATGCTTTTTGT+GGG + chr8_1:67941033-67941052 Msa1209470:CDS 40.0%
!! GCATGCTTTTTGTGGGTATT+GGG + chr8_1:67941040-67941059 Msa1209470:CDS 40.0%
!! CATGCTTTTTGTGGGTATTG+GGG + chr8_1:67941041-67941060 Msa1209470:CDS 40.0%
GGGATTAGACCTAATGTTGA+AGG + chr8_1:67941065-67941084 Msa1209470:CDS 40.0%
!! GTGGTGAAGATAATGGAGAT+TGG + chr8_1:67941158-67941177 Msa1209470:CDS 40.0%
AATGGAGATTGGAGTTGGAT+TGG + chr8_1:67941169-67941188 Msa1209470:CDS 40.0%
AGGACTAGGCACTTGATTTA+AGG + chr8_1:67941471-67941490 Msa1209470:intron 40.0%
TGCATGAGATTGAGAGCAAA+TGG - chr8_1:67941648-67941667 None:intergenic 40.0%
! GGTGGTGTTAATACTGTTAG+AGG + chr8_1:67941692-67941711 Msa1209470:intron 40.0%
!! TACCGTTAGCTTTAAAACGG+TGG - chr8_1:67941786-67941805 None:intergenic 40.0%
TCCGTGAGGAAACATTTCAA+AGG + chr8_1:67942065-67942084 Msa1209470:CDS 40.0%
!! GCCTTTGAAATGTTTCCTCA+CGG - chr8_1:67942069-67942088 None:intergenic 40.0%
TGCAACGATTTCATGTTCCT+TGG + chr8_1:67942116-67942135 Msa1209470:CDS 40.0%
GTGAAATGGTTTCTGTACCA+AGG - chr8_1:67942136-67942155 None:intergenic 40.0%
GGTACAGAAACCATTTCACT+TGG + chr8_1:67942137-67942156 Msa1209470:CDS 40.0%
! TGTGGGTGTTACAAAGGTTA+AGG - chr8_1:67942245-67942264 None:intergenic 40.0%
! TAGAAGTGTGGGTGTTACAA+AGG - chr8_1:67942251-67942270 None:intergenic 40.0%
TGTAACACCCACACTTCTAA+TGG + chr8_1:67942252-67942271 Msa1209470:intron 40.0%
CACATCTTCCATTAGAAGTG+TGG - chr8_1:67942263-67942282 None:intergenic 40.0%
!!! AGGTGATGATTTTTGGTGCA+CGG + chr8_1:67942452-67942471 Msa1209470:intron 40.0%
TGCCTATAACAGCTTATGGA+TGG + chr8_1:67942533-67942552 Msa1209470:CDS 40.0%
GCCTATAACAGCTTATGGAT+GGG + chr8_1:67942534-67942553 Msa1209470:CDS 40.0%
TCCCATCCATAAGCTGTTAT+AGG - chr8_1:67942538-67942557 None:intergenic 40.0%
GATTGAAACATGTCCCAATC+TGG - chr8_1:67942573-67942592 None:intergenic 40.0%
! CTTCAAGTTACTCAAGAAGC+TGG + chr8_1:67942680-67942699 Msa1209470:CDS 40.0%
ACATGTACACTCCTCAGATT+AGG + chr8_1:67943127-67943146 Msa1209470:intron 40.0%
TTGGGTCTATTCAATTGCCA+AGG + chr8_1:67943247-67943266 Msa1209470:CDS 40.0%
TATTCAATTGCCAAGGAGGA+GGG + chr8_1:67943254-67943273 Msa1209470:CDS 40.0%
AATGACAGTTTCTCCTGTGA+TGG + chr8_1:67943498-67943517 Msa1209470:CDS 40.0%
!! TTTTTCGGTATGACCATCAC+AGG - chr8_1:67943514-67943533 None:intergenic 40.0%
! TCAATTTGCTCCAATCGGAT+TGG + chr8_1:67943540-67943559 Msa1209470:CDS 40.0%
AGCATGTTAACCAATCCGAT+TGG - chr8_1:67943553-67943572 None:intergenic 40.0%
TTGGTTAACATGCTCAACTC+CGG + chr8_1:67943559-67943578 Msa1209470:CDS 40.0%
CGGAGGTTCAATTATGTCAT+TGG + chr8_1:67943579-67943598 Msa1209470:CDS 40.0%
!! CATACAACTTATCGGCTTCT+CGG - chr8_1:67943674-67943693 None:intergenic 40.0%
ATTGAGAACCTTGCAGAACA+AGG - chr8_1:67943760-67943779 None:intergenic 40.0%
TTGTTCTGCAAGGTTCTCAA+TGG + chr8_1:67943759-67943778 Msa1209470:CDS 40.0%
AGTGAGGATTGGGTGGTTAT+TGG - chr8_1:67940151-67940170 None:intergenic 45.0%
ATGGGACTTGAGTGAGGATT+GGG - chr8_1:67940161-67940180 None:intergenic 45.0%
TGTTTGATGGGACTTGAGTG+AGG - chr8_1:67940167-67940186 None:intergenic 45.0%
!!! TTTTGGTGTTTGTGAGGTGG+TGG - chr8_1:67940201-67940220 None:intergenic 45.0%
AGCCGACACATAGTTTCCAT+TGG + chr8_1:67940285-67940304 Msa1209470:CDS 45.0%
GGCCAATGGAAACTATGTGT+CGG - chr8_1:67940290-67940309 None:intergenic 45.0%
TGAATCTGATTCCGTTGAGG+TGG - chr8_1:67940311-67940330 None:intergenic 45.0%
TGGTGAATCTGATTCCGTTG+AGG - chr8_1:67940314-67940333 None:intergenic 45.0%
CTGAAAGAACCTTCGATGAG+TGG - chr8_1:67940468-67940487 None:intergenic 45.0%
TTCAGAGCTTGTCTTCAACC+AGG + chr8_1:67940483-67940502 Msa1209470:CDS 45.0%
GTGGACATTTGCATGGAAAG+TGG + chr8_1:67940522-67940541 Msa1209470:CDS 45.0%
! GGTTGATTCAACAACACGTG+TGG - chr8_1:67940550-67940569 None:intergenic 45.0%
AAGGTTGTTAGAGACCACCT+AGG + chr8_1:67940633-67940652 Msa1209470:CDS 45.0%
CACCTTCTTTCACTCCTTGA+GGG - chr8_1:67940749-67940768 None:intergenic 45.0%
ACACCTTCTTTCACTCCTTG+AGG - chr8_1:67940750-67940769 None:intergenic 45.0%
CTTCCCAACATTTGTTCACC+AGG - chr8_1:67940900-67940919 None:intergenic 45.0%
CTGGTGAACAAATGTTGGGA+AGG + chr8_1:67940898-67940917 Msa1209470:CDS 45.0%
!! GGCATGCTTTTTGTGGGTAT+TGG + chr8_1:67941039-67941058 Msa1209470:CDS 45.0%
!!! CTTTTTGTGGGTATTGGGGT+GGG + chr8_1:67941045-67941064 Msa1209470:CDS 45.0%
ACCTAATGTTGAAGGGATGC+CGG + chr8_1:67941073-67941092 Msa1209470:CDS 45.0%
TTTGGCGGTGGTGAAGATAA+TGG + chr8_1:67941151-67941170 Msa1209470:CDS 45.0%
ATTGAGGAAAATGCATCCGG+TGG + chr8_1:67941674-67941693 Msa1209470:intron 45.0%
GAGATGCTGTCAGAGGAATA+TGG + chr8_1:67941996-67942015 Msa1209470:CDS 45.0%
ATGCTGTCAGAGGAATATGG+TGG + chr8_1:67941999-67942018 Msa1209470:CDS 45.0%
! GCTTGCAAAAGCGTACTACA+AGG + chr8_1:67942031-67942050 Msa1209470:CDS 45.0%
ATCGTTGCACTGTTGCATAC+TGG - chr8_1:67942105-67942124 None:intergenic 45.0%
ACCATTTCACTTGGACGAGT+TGG + chr8_1:67942146-67942165 Msa1209470:CDS 45.0%
ACCAACTCGTCCAAGTGAAA+TGG - chr8_1:67942150-67942169 None:intergenic 45.0%
TACTGACATGACACGGACAT+GGG - chr8_1:67942368-67942387 None:intergenic 45.0%
! TGCAACCAATAGGTACCGTT+TGG - chr8_1:67942492-67942511 None:intergenic 45.0%
! AACGGTACCTATTGGTTGCA+AGG + chr8_1:67942492-67942511 Msa1209470:CDS 45.0%
GTGACATCCTTGCAACCAAT+AGG - chr8_1:67942502-67942521 None:intergenic 45.0%
TTGGTTGCAAGGATGTCACA+TGG + chr8_1:67942503-67942522 Msa1209470:CDS 45.0%
!!! ACTCAAGAAGCTGGTTTTGC+CGG + chr8_1:67942689-67942708 Msa1209470:CDS 45.0%
GGTCTATTCAATTGCCAAGG+AGG + chr8_1:67943250-67943269 Msa1209470:CDS 45.0%
CTATTCAATTGCCAAGGAGG+AGG + chr8_1:67943253-67943272 Msa1209470:CDS 45.0%
TGAGAGGTCATGGAGAAATG+AGG + chr8_1:67943638-67943657 Msa1209470:CDS 45.0%
GAGAGGTCATGGAGAAATGA+GGG + chr8_1:67943639-67943658 Msa1209470:CDS 45.0%
!! TCAAAAAAATTTAATATATA+AGG + chr8_1:67941445-67941464 Msa1209470:intron 5.0%
GATGGGACTTGAGTGAGGAT+TGG - chr8_1:67940162-67940181 None:intergenic 50.0%
!! TTTGTGAGGTGGTGGAGTGA+TGG - chr8_1:67940193-67940212 None:intergenic 50.0%
! ACCGTTGCTGGTTGTTTCGT+CGG + chr8_1:67940240-67940259 Msa1209470:CDS 50.0%
!! GAAACTATGTGTCGGCTGCT+TGG - chr8_1:67940282-67940301 None:intergenic 50.0%
GTTTCCATTGGCCACCTCAA+CGG + chr8_1:67940297-67940316 Msa1209470:CDS 50.0%
! AACTATGGTGGAGCACTCAC+TGG + chr8_1:67940349-67940368 Msa1209470:CDS 50.0%
ACTCACTGGACAGGAACCAA+AGG + chr8_1:67940363-67940382 Msa1209470:CDS 50.0%
TACCTTAAGGTGGACCCTCA+AGG + chr8_1:67940732-67940751 Msa1209470:CDS 50.0%
GACCCTCAAGGAGTGAAAGA+AGG + chr8_1:67940744-67940763 Msa1209470:CDS 50.0%
! TAGGTATGGGTGGGTTTGTG+AGG + chr8_1:67940970-67940989 Msa1209470:CDS 50.0%
! AGGTATGGGTGGGTTTGTGA+GGG + chr8_1:67940971-67940990 Msa1209470:CDS 50.0%
!!! GCTTTTTGTGGGTATTGGGG+TGG + chr8_1:67941044-67941063 Msa1209470:CDS 50.0%
TCCGGCATCCCTTCAACATT+AGG - chr8_1:67941077-67941096 None:intergenic 50.0%
TTCCGGCGAAATTGTCACCT+GGG + chr8_1:67941108-67941127 Msa1209470:CDS 50.0%
!! TGAGAGGTGCATGACGGATT+TGG + chr8_1:67941133-67941152 Msa1209470:CDS 50.0%
!! TGGATTGGTGAAGCCAGAAG+AGG + chr8_1:67941184-67941203 Msa1209470:CDS 50.0%
! TGAAGCCAGAAGAGGCATGT+CGG + chr8_1:67941192-67941211 Msa1209470:CDS 50.0%
TACAACCGACATGCCTCTTC+TGG - chr8_1:67941200-67941219 None:intergenic 50.0%
! GAGGCATGTCGGTTGTATGA+TGG + chr8_1:67941203-67941222 Msa1209470:CDS 50.0%
!! GGTTCTAGAGATGCTGTCAG+AGG + chr8_1:67941989-67942008 Msa1209470:intron 50.0%
AGGCACTAACTGAATCCGTG+AGG + chr8_1:67942051-67942070 Msa1209470:CDS 50.0%
! GTACTGACATGACACGGACA+TGG - chr8_1:67942369-67942388 None:intergenic 50.0%
GGGATCCAAACGGTACCTAT+TGG + chr8_1:67942484-67942503 Msa1209470:CDS 50.0%
ACCAGAGATTGCACGAGAAG+CGG - chr8_1:67942622-67942641 None:intergenic 50.0%
!!! AAGAAGCTGGTTTTGCCGGA+TGG + chr8_1:67942693-67942712 Msa1209470:CDS 50.0%
!! TGCCGGATGGATCGATTTTG+CGG + chr8_1:67942706-67942725 Msa1209470:CDS 50.0%
CACCGCAAAATCGATCCATC+CGG - chr8_1:67942711-67942730 None:intergenic 50.0%
CACAGAGTGCGAAAACTCAG+AGG - chr8_1:67943311-67943330 None:intergenic 50.0%
GTTAACATGCTCAACTCCGG+AGG + chr8_1:67943562-67943581 Msa1209470:CDS 50.0%
AGAATTGGGGTGAGAGGTCA+TGG + chr8_1:67943628-67943647 Msa1209470:CDS 50.0%
! TGGTAATGCTCCATGTCCCT+TGG + chr8_1:67943734-67943753 Msa1209470:CDS 50.0%
ACCTTGCAGAACAAGGCCAA+GGG - chr8_1:67943753-67943772 None:intergenic 50.0%
AACCTTGCAGAACAAGGCCA+AGG - chr8_1:67943754-67943773 None:intergenic 50.0%
GGTGGGATGGGAATTGGCAT+GGG - chr8_1:67940100-67940119 None:intergenic 55.0%
TGGTGGGATGGGAATTGGCA+TGG - chr8_1:67940101-67940120 None:intergenic 55.0%
GGATTGGGTGGTTATTGGCG+AGG - chr8_1:67940146-67940165 None:intergenic 55.0%
GGACTTGAGTGAGGATTGGG+TGG - chr8_1:67940158-67940177 None:intergenic 55.0%
TCTCCAAACACCACCGTTGC+TGG + chr8_1:67940228-67940247 Msa1209470:CDS 55.0%
CAACCAGCAACGGTGGTGTT+TGG - chr8_1:67940234-67940253 None:intergenic 55.0%
GACGAAACAACCAGCAACGG+TGG - chr8_1:67940241-67940260 None:intergenic 55.0%
GCCGACGAAACAACCAGCAA+CGG - chr8_1:67940244-67940263 None:intergenic 55.0%
GATTCCGTTGAGGTGGCCAA+TGG - chr8_1:67940304-67940323 None:intergenic 55.0%
CTCCTTGAGGGTCCACCTTA+AGG - chr8_1:67940737-67940756 None:intergenic 55.0%
TGTTGAAGGGATGCCGGAGT+CGG + chr8_1:67941079-67941098 Msa1209470:CDS 55.0%
GTTCCGGCGAAATTGTCACC+TGG + chr8_1:67941107-67941126 Msa1209470:CDS 55.0%
TCCGGCGAAATTGTCACCTG+GGG + chr8_1:67941109-67941128 Msa1209470:CDS 55.0%
AATTGTCACCTGGGGCTGAG+AGG + chr8_1:67941117-67941136 Msa1209470:CDS 55.0%
!! GAGGTGCATGACGGATTTGG+CGG + chr8_1:67941136-67941155 Msa1209470:CDS 55.0%
TACCGTTTGGATCCCCAGCT+GGG - chr8_1:67942479-67942498 None:intergenic 55.0%
GCTTCTCGTGCAATCTCTGG+TGG + chr8_1:67942621-67942640 Msa1209470:CDS 55.0%
TCAATTGCCAAGGAGGAGGG+TGG + chr8_1:67943257-67943276 Msa1209470:CDS 55.0%
CTGGTGAGAATTGGGGTGAG+AGG + chr8_1:67943622-67943641 Msa1209470:CDS 55.0%
CAGAACAAGGCCAAGGGACA+TGG - chr8_1:67943747-67943766 None:intergenic 55.0%
!! TCCCTTGGCCTTGTTCTGCA+AGG + chr8_1:67943749-67943768 Msa1209470:CDS 55.0%
! TGGTGGAGCACTCACTGGAC+AGG + chr8_1:67940354-67940373 Msa1209470:CDS 60.0%
GCCCCAGGTGACAATTTCGC+CGG - chr8_1:67941113-67941132 None:intergenic 60.0%
! TGGGGCTGAGAGGTGCATGA+CGG + chr8_1:67941127-67941146 Msa1209470:CDS 60.0%
!! GTGCATGACGGATTTGGCGG+TGG + chr8_1:67941139-67941158 Msa1209470:CDS 60.0%
!! TTTTGGTGCACGGACCCAGC+TGG + chr8_1:67942462-67942481 Msa1209470:CDS 60.0%
! TTTGGTGCACGGACCCAGCT+GGG + chr8_1:67942463-67942482 Msa1209470:CDS 60.0%
GACCCAGCTGGGGATCCAAA+CGG + chr8_1:67942474-67942493 Msa1209470:CDS 60.0%
GTACCGTTTGGATCCCCAGC+TGG - chr8_1:67942480-67942499 None:intergenic 60.0%
GCCGCTTCTCGTGCAATCTC+TGG + chr8_1:67942618-67942637 Msa1209470:CDS 60.0%
TGAAGGGATGCCGGAGTCGG+TGG + chr8_1:67941082-67941101 Msa1209470:CDS 65.0%
GTCATGCACCTCTCAGCCCC+AGG - chr8_1:67941128-67941147 None:intergenic 65.0%
TTGGTGCACGGACCCAGCTG+GGG + chr8_1:67942464-67942483 Msa1209470:CDS 65.0%
AGGGATGCCGGAGTCGGTGG+TGG + chr8_1:67941085-67941104 Msa1209470:CDS 70.0%
! GCCGGAGTCGGTGGTGGTTC+CGG + chr8_1:67941091-67941110 Msa1209470:CDS 70.0%
!! GCCGGAACCACCACCGACTC+CGG - chr8_1:67941095-67941114 None:intergenic 70.0%
! CAGGGCACCACCCTCCTCCT+TGG - chr8_1:67943267-67943286 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 67940057 67943798 67940057 ID=Msa1209470;Name=Msa1209470
chr8_1 mRNA 67940057 67943798 67940057 ID=Msa1209470-mRNA-1;Parent=Msa1209470;Name=Msa1209470-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|4|0|778
chr8_1 exon 67940057 67941283 67940057 ID=Msa1209470-mRNA-1:exon:22551;Parent=Msa1209470-mRNA-1
chr8_1 exon 67941990 67942167 67941990 ID=Msa1209470-mRNA-1:exon:22552;Parent=Msa1209470-mRNA-1
chr8_1 exon 67942454 67942821 67942454 ID=Msa1209470-mRNA-1:exon:22553;Parent=Msa1209470-mRNA-1
chr8_1 exon 67943235 67943798 67943235 ID=Msa1209470-mRNA-1:exon:22554;Parent=Msa1209470-mRNA-1
chr8_1 CDS 67940057 67941283 67940057 ID=Msa1209470-mRNA-1:cds;Parent=Msa1209470-mRNA-1
chr8_1 CDS 67941990 67942167 67941990 ID=Msa1209470-mRNA-1:cds;Parent=Msa1209470-mRNA-1
chr8_1 CDS 67942454 67942821 67942454 ID=Msa1209470-mRNA-1:cds;Parent=Msa1209470-mRNA-1
chr8_1 CDS 67943235 67943798 67943235 ID=Msa1209470-mRNA-1:cds;Parent=Msa1209470-mRNA-1
Gene Sequence

>Msa1209470

ATGGCGCCAAGCTTAACCACCGTAAAAGAAACAAATCTTTCCCATGCCAATTCCCATCCCACCATAAAACTAGAAAACTCAACATTCCTCGCCAATAACCACCCAATCCTCACTCAAGTCCCATCAAACATAACCATCACTCCACCACCTCACAAACACCAAAATTCTTCTTCTCCAAACACCACCGTTGCTGGTTGTTTCGTCGGCTTCAACGCTGACGAACCAAGCAGCCGACACATAGTTTCCATTGGCCACCTCAACGGAATCAGATTCACCAGCATATTCAGATTTAAACTATGGTGGAGCACTCACTGGACAGGAACCAAAGGCAATGACATAGAAAACGAAACTCAAATGATTATACTCGAAAACGACACCGTTAAACAACGTCCCTACGTTCTTCTTTTACCACTCATCGAAGGTTCTTTCAGAGCTTGTCTTCAACCAGGACAAAACAATAACAACGTGGACATTTGCATGGAAAGTGGGTCCACACGTGTTGTTGAATCAACCTTCAAAACATGTTTATACATTCATGCGAACTTCGATCCTTATATTTTAATGAACGAAGCGATTAAGGTTGTTAGAGACCACCTAGGAACATTCAAACTTCTTGAAGAAAAAACAATACCTGATATAGTTGATAAATTTGGATGGTGTACATGGGATGCATTTTACCTTAAGGTGGACCCTCAAGGAGTGAAAGAAGGTGTTAAGGGTTTAGTAGAAGGTGGGTGTCCTCCAAGTTTTGTAATCATTGATGATGGTTGGCAAAACTTTTGTCGTGATGATGAAGATTTTTTGAACGGTGGTGATTGTTTAAGTTTGAATTGTTCTATACCTGGTGAACAAATGTTGGGAAGGTTAATAAGTTTTGAAGAAAATAAAAAATTTAAGGAGTATGATGAATCTTTAGGTATGGGTGGGTTTGTGAGGGATTTAAAGGAGGAATTTAGGGGTTTATTAAAGGAGGTTTATGTGTGGCATGCTTTTTGTGGGTATTGGGGTGGGATTAGACCTAATGTTGAAGGGATGCCGGAGTCGGTGGTGGTTCCGGCGAAATTGTCACCTGGGGCTGAGAGGTGCATGACGGATTTGGCGGTGGTGAAGATAATGGAGATTGGAGTTGGATTGGTGAAGCCAGAAGAGGCATGTCGGTTGTATGATGGACTTCATTCTCATTTGAAATCTGTTGGTATTGATGGTGTCAAGATTGATGTCACACACGTTCTAGAGATGCTGTCAGAGGAATATGGTGGTCGAGTTGAGCTTGCAAAAGCGTACTACAAGGCACTAACTGAATCCGTGAGGAAACATTTCAAAGGCAATGGTGTCATTTCCAGTATGCAACAGTGCAACGATTTCATGTTCCTTGGTACAGAAACCATTTCACTTGGACGAGTTGGTGATGATTTTTGGTGCACGGACCCAGCTGGGGATCCAAACGGTACCTATTGGTTGCAAGGATGTCACATGGTGCATTGTGCCTATAACAGCTTATGGATGGGAAATTTTATACAACCAGATTGGGACATGTTTCAATCTCATCATGCTTGTTCTGAATTTCATGCCGCTTCTCGTGCAATCTCTGGTGGACCGATATATGTTAGCGATTCTGTTGGAAACCACAACTTCAAGTTACTCAAGAAGCTGGTTTTGCCGGATGGATCGATTTTGCGGTGTCAACATTATGCACTTCCAACAAGAGACTCTTTATTTGTAGACCCTTTACATGATGGCAAAACAATGCTCAAAATTTGGAATCTCAACAAATATAGTGGAGTTTTGGGTCTATTCAATTGCCAAGGAGGAGGGTGGTGCCCTGTGACTAGAAGAAACAAAAGTGCCTCTGAGTTTTCGCACTCTGTGACTTGTTTTGCAAGTCCTAAAGACATTGAATGGAGCAAAGGGAAAAACCCAATTTGCATGAAAGGTGTTGATGTATTTGCTGTCTACATGTTTAAAGATGAAAAATTGAAGCTGCTGAAGTGCACAGAGACTATAGAAGTTTCACTTGAGCCTTTTAGTTTCGAGCTAATGACAGTTTCTCCTGTGATGGTCATACCGAAAAATTCAATTCAATTTGCTCCAATCGGATTGGTTAACATGCTCAACTCCGGAGGTTCAATTATGTCATTGGAGTTTGATGAAGAGAAAAATCTGGTGAGAATTGGGGTGAGAGGTCATGGAGAAATGAGGGTGTTCGCATCCGAGAAGCCGATAAGTTGTATGATTGATGGAGAAGCTGTGAAATTTGATTATGATGATAGCATGGTAATGCTCCATGTCCCTTGGCCTTGTTCTGCAAGGTTCTCAATGGTTGAGTATTTATTCTGA
Protein sequence

>Msa1209470

MAPSLTTVKETNLSHANSHPTIKLENSTFLANNHPILTQVPSNITITPPPHKHQNSSSPNTTVAGCFVGFNADEPSSRHIVSIGHLNGIRFTSIFRFKLWWSTHWTGTKGNDIENETQMIILENDTVKQRPYVLLLPLIEGSFRACLQPGQNNNNVDICMESGSTRVVESTFKTCLYIHANFDPYILMNEAIKVVRDHLGTFKLLEEKTIPDIVDKFGWCTWDAFYLKVDPQGVKEGVKGLVEGGCPPSFVIIDDGWQNFCRDDEDFLNGGDCLSLNCSIPGEQMLGRLISFEENKKFKEYDESLGMGGFVRDLKEEFRGLLKEVYVWHAFCGYWGGIRPNVEGMPESVVVPAKLSPGAERCMTDLAVVKIMEIGVGLVKPEEACRLYDGLHSHLKSVGIDGVKIDVTHVLEMLSEEYGGRVELAKAYYKALTESVRKHFKGNGVISSMQQCNDFMFLGTETISLGRVGDDFWCTDPAGDPNGTYWLQGCHMVHCAYNSLWMGNFIQPDWDMFQSHHACSEFHAASRAISGGPIYVSDSVGNHNFKLLKKLVLPDGSILRCQHYALPTRDSLFVDPLHDGKTMLKIWNLNKYSGVLGLFNCQGGGWCPVTRRNKSASEFSHSVTCFASPKDIEWSKGKNPICMKGVDVFAVYMFKDEKLKLLKCTETIEVSLEPFSFELMTVSPVMVIPKNSIQFAPIGLVNMLNSGGSIMSLEFDEEKNLVRIGVRGHGEMRVFASEKPISCMIDGEAVKFDYDDSMVMLHVPWPCSARFSMVEYLF*