AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0252440


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0252440 MtrunA17_Chr2g0311181 98.171 328 6 0 1 328 1 328 0.0 665
Msa0252440 MtrunA17_Chr3g0094341 97.884 189 4 0 51 239 13 201 3.82e-134 380
Msa0252440 MtrunA17_Chr2g0304101 39.662 237 138 2 69 300 69 305 1.31e-57 188
Msa0252440 MtrunA17_Chr5g0417641 36.546 249 149 3 60 301 48 294 6.17e-49 166
Msa0252440 MtrunA17_Chr7g0250261 31.923 260 161 7 51 299 25 279 2.26e-33 124
Msa0252440 MtrunA17_Chr0c29g0494001 31.923 260 161 7 51 299 25 279 2.26e-33 124
Msa0252440 MtrunA17_Chr5g0445491 26.639 244 161 6 70 296 227 469 1.49e-25 106
Msa0252440 MtrunA17_Chr4g0034981 28.077 260 173 7 69 316 345 602 3.69e-23 100
Msa0252440 MtrunA17_Chr2g0294671 29.464 224 146 5 87 303 268 486 1.21e-22 98.2
Msa0252440 MtrunA17_Chr6g0448821 28.426 197 134 2 87 277 139 334 1.78e-22 96.7
Msa0252440 MtrunA17_Chr6g0448821 26.263 198 123 6 65 255 161 342 1.92e-14 73.6
Msa0252440 MtrunA17_Chr4g0043941 26.966 178 121 2 129 300 145 319 8.61e-16 77.0
Msa0252440 MtrunA17_Chr5g0428941 21.739 276 169 5 75 304 213 487 2.19e-15 76.6
Msa0252440 MtrunA17_Chr1g0212691 23.373 338 166 12 75 326 145 475 5.48e-14 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0252440 AT2G36000.1 55.985 259 110 3 70 324 74 332 1.34e-99 297
Msa0252440 AT2G36000.2 57.083 240 99 3 70 305 74 313 3.37e-94 283
Msa0252440 AT2G34620.1 40.000 240 139 2 69 303 55 294 5.50e-59 192
Msa0252440 AT2G03050.2 38.783 263 148 6 50 303 15 273 1.21e-53 177
Msa0252440 AT2G03050.1 38.783 263 148 6 50 303 14 272 1.40e-53 177
Msa0252440 AT3G18870.1 31.020 245 155 5 66 302 33 271 1.21e-34 128
Msa0252440 AT5G55580.2 25.926 243 164 6 70 296 114 356 1.60e-25 105
Msa0252440 AT5G55580.1 25.926 243 164 6 70 296 220 462 3.59e-25 105
Msa0252440 AT4G14605.2 26.033 242 170 5 66 300 229 468 1.89e-21 95.1
Msa0252440 AT4G14605.1 26.033 242 170 5 66 300 229 468 1.89e-21 95.1
Msa0252440 AT1G78930.1 27.619 210 144 3 75 277 344 552 5.99e-21 94.0
Msa0252440 AT2G21710.1 28.629 248 161 7 69 303 352 596 1.49e-19 89.7
Msa0252440 AT4G38160.4 24.752 202 143 4 85 277 97 298 1.44e-15 76.6
Msa0252440 AT4G38160.1 24.752 202 143 4 85 277 97 298 1.44e-15 76.6
Msa0252440 AT4G38160.3 24.752 202 143 4 85 277 97 298 1.78e-15 77.0
Msa0252440 AT4G38160.2 32.824 131 81 2 154 277 168 298 2.73e-15 76.3
Msa0252440 AT2G44020.1 23.134 268 159 8 89 311 203 468 6.98e-15 75.9
Msa0252440 AT4G02990.2 23.741 278 163 8 73 303 219 494 1.13e-12 68.9
Msa0252440 AT4G02990.1 23.741 278 163 8 73 303 219 494 1.13e-12 68.9

Find 102 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATATTGAAATTGAAAATT+TGG 0.074247 2_2:-43480302 None:intergenic
ATTGAATACTTTGAAAATAT+TGG 0.171383 2_2:+43482296 Msa0252440:CDS
TTATAGTATTAAGAATAATT+TGG 0.227622 2_2:+43482373 Msa0252440:CDS
TCTGCAAACCCTTTCATTCT+AGG 0.246141 2_2:+43480446 Msa0252440:CDS
CAGAGACGAGTGAAGGATTT+GGG 0.284020 2_2:-43480427 None:intergenic
TAGTGGTTATGTTAGTTTAC+AGG 0.286851 2_2:+43482736 Msa0252440:three_prime_UTR
ACCACAAAGTAATTGTATTT+AGG 0.292252 2_2:-43482398 None:intergenic
GAATGAAGAATTGGTGTTAA+TGG 0.297712 2_2:-43480334 None:intergenic
TGCAATTGAGTTTCGGCGTT+TGG 0.299697 2_2:+43482019 Msa0252440:CDS
CAATTACTTTGTGGTGGAAA+TGG 0.302908 2_2:+43482406 Msa0252440:CDS
AATATTGAAATTGAAAATTT+GGG 0.309126 2_2:-43480301 None:intergenic
AGCAGTGGCAGAGCACATTT+TGG 0.318059 2_2:-43480371 None:intergenic
GCAGAGACGAGTGAAGGATT+TGG 0.326298 2_2:-43480428 None:intergenic
GAGATGGTGGGAGTGTGTTC+TGG 0.336402 2_2:-43480267 None:intergenic
ACATAAACGGTGTGTAGAAA+TGG 0.346811 2_2:+43482502 Msa0252440:CDS
ATGTATTACAGGTTGTAAAA+TGG 0.349290 2_2:+43481817 Msa0252440:intron
AATTACTTTGTGGTGGAAAT+GGG 0.364045 2_2:+43482407 Msa0252440:CDS
TCTCATTTAGCTTAGAGAAT+AGG 0.372077 2_2:+43482468 Msa0252440:CDS
GTGATGTGAAGTGGTTGTTT+TGG 0.382007 2_2:-43482820 None:intergenic
TTGGGAGGTAGAGTTTGATT+TGG 0.383136 2_2:-43481846 None:intergenic
CTACCTCCCAACAGTGATAC+TGG 0.387680 2_2:+43481858 Msa0252440:CDS
ATTTCTCTGCAATTGAGTTT+CGG 0.390370 2_2:+43482012 Msa0252440:CDS
CGACACTACATGATAGCAAA+TGG 0.394976 2_2:-43482253 None:intergenic
CTGCAAACCCTTTCATTCTA+GGG 0.396577 2_2:+43480447 Msa0252440:CDS
CCTCTTCTATGCCAATACTT+TGG 0.410530 2_2:-43482217 None:intergenic
CCTCCTGCTTAAAACTCCTT+TGG 0.414719 2_2:+43482773 Msa0252440:three_prime_UTR
CCTTGAAAACATCTCCTTTG+TGG 0.416787 2_2:+43482612 Msa0252440:CDS
AGGGATAGAGAATGAAGAAT+TGG 0.418711 2_2:-43480343 None:intergenic
ACTTTGGTGGTAAGAATCTC+CGG 0.437649 2_2:-43482053 None:intergenic
GGGTATAATGTCTGAGACTT+TGG 0.442292 2_2:-43482069 None:intergenic
GCGTTTGGTTGGCATGTGCC+CGG 0.446971 2_2:+43482034 Msa0252440:CDS
TCCACAGTGGAATACATTAC+CGG 0.452556 2_2:+43481984 Msa0252440:CDS
TCGTGAAGAATGGAAGGAAA+TGG 0.456886 2_2:-43480479 None:intergenic
CACCGAGAAGTTCGTGTAAG+TGG 0.461340 2_2:+43482107 Msa0252440:CDS
GTGTGTTCTGGAACGGAGAT+TGG 0.462780 2_2:-43480255 None:intergenic
AGCCACTTACACGAACTTCT+CGG 0.475846 2_2:-43482109 None:intergenic
GGTTACTAGTGTTGAGATGG+TGG 0.476282 2_2:-43480280 None:intergenic
TGGAAACCAGTATCACTGTT+GGG 0.483002 2_2:-43481864 None:intergenic
ACATCTCCTTTGTGGTGTGC+TGG 0.485125 2_2:+43482620 Msa0252440:CDS
CATAAACGGTGTGTAGAAAT+GGG 0.489419 2_2:+43482503 Msa0252440:CDS
GCCTAAATACAATTACTTTG+TGG 0.489751 2_2:+43482397 Msa0252440:CDS
AGAAGGTAGGTCGTGAAGAA+TGG 0.495056 2_2:-43480489 None:intergenic
CTTCTATGCCAATACTTTGG+AGG 0.495955 2_2:-43482214 None:intergenic
TATTGAAAATCATCCGAAGC+TGG 0.499544 2_2:+43481935 Msa0252440:CDS
ATTGAGTTTCGGCGTTTGGT+TGG 0.499938 2_2:+43482023 Msa0252440:CDS
AGATAATGTTAGGAAGTTAG+TGG 0.505657 2_2:+43482719 Msa0252440:three_prime_UTR
GGATTAAGCCTCGACATAAA+CGG 0.510017 2_2:+43482489 Msa0252440:CDS
AAAACAGCTGAGGAAATCTT+CGG 0.515087 2_2:-43482349 None:intergenic
CGGTGAAGGAACGTGAAGAC+GGG 0.516327 2_2:-43482089 None:intergenic
CTTTGGAGGAAGTACATAGT+AGG 0.519338 2_2:-43482200 None:intergenic
ATGTAATAAATCGTCGTCCT+CGG 0.520791 2_2:+43482144 Msa0252440:CDS
AGTGACGCAGTAACCAGCTT+CGG 0.520879 2_2:-43481948 None:intergenic
TGGTATCAAAATCTGAGCTA+AGG 0.521053 2_2:-43482800 None:intergenic
GGAAATGGGGAGAGATTTGA+AGG 0.522542 2_2:+43482421 Msa0252440:CDS
AGTGGTTATGTTAGTTTACA+GGG 0.528480 2_2:+43482737 Msa0252440:three_prime_UTR
AGTAGGAACCCTAGAATGAA+AGG 0.529503 2_2:-43480455 None:intergenic
TACCTTCTTTGTCAGAGCTA+CGG 0.531441 2_2:+43480504 Msa0252440:CDS
TTGGAAACCAGTATCACTGT+TGG 0.536691 2_2:-43481865 None:intergenic
GTCTTTAATAACAAAGGAAG+AGG 0.541502 2_2:-43482536 None:intergenic
GATTGGAGAAGTGATGGATG+AGG 0.542930 2_2:-43480238 None:intergenic
TAAATACAATTACTTTGTGG+TGG 0.543115 2_2:+43482400 Msa0252440:CDS
GAATGGAAGGAAATGGAAGT+AGG 0.544386 2_2:-43480472 None:intergenic
GGTAGGTCGTGAAGAATGGA+AGG 0.551426 2_2:-43480485 None:intergenic
GACACTACATGATAGCAAAT+GGG 0.553619 2_2:-43482252 None:intergenic
ATGTACTTCCTCCAAAGTAT+TGG 0.554399 2_2:+43482206 Msa0252440:CDS
TCGGTGAAGGAACGTGAAGA+CGG 0.554418 2_2:-43482090 None:intergenic
AATTGCAGAGAAATCCATTC+CGG 0.562172 2_2:-43482003 None:intergenic
TTTGGGAATGTGGTGATCGG+TGG 0.563121 2_2:-43480410 None:intergenic
AAGCTAAATGAGAAATAATG+AGG 0.567357 2_2:-43482458 None:intergenic
TCACTAGTCTTTAATAACAA+AGG 0.568382 2_2:-43482542 None:intergenic
GGATTTGGGAATGTGGTGAT+CGG 0.571770 2_2:-43480413 None:intergenic
TTGGGTTACTAGTGTTGAGA+TGG 0.571825 2_2:-43480283 None:intergenic
ACATTCTTTGTGATGTGAAG+TGG 0.572952 2_2:-43482829 None:intergenic
TATAATGTCTGAGACTTTGG+TGG 0.577681 2_2:-43482066 None:intergenic
GTAGGAACCCTAGAATGAAA+GGG 0.583590 2_2:-43480454 None:intergenic
CTTTGGTGGTAAGAATCTCC+GGG 0.592939 2_2:-43482052 None:intergenic
GTTACTAGTGTTGAGATGGT+GGG 0.594973 2_2:-43480279 None:intergenic
GGGTTTGCAGAGACGAGTGA+AGG 0.596048 2_2:-43480434 None:intergenic
ATTACTTTGTGGTGGAAATG+GGG 0.596286 2_2:+43482408 Msa0252440:CDS
AACGGAGATTGGAGAAGTGA+TGG 0.597106 2_2:-43480244 None:intergenic
GTGGTGATCGGTGGAAAACA+AGG 0.598610 2_2:-43480401 None:intergenic
TCTATACTTGATCAATATCA+CGG 0.599535 2_2:-43482643 None:intergenic
AACCGTAGCTCTGACAAAGA+AGG 0.600770 2_2:-43480506 None:intergenic
CCAAAGTATTGGCATAGAAG+AGG 0.600971 2_2:+43482217 Msa0252440:CDS
AAACAAGGGTGTTGTAGCAG+TGG 0.603821 2_2:-43480386 None:intergenic
TTACACGAACTTCTCGGTGA+AGG 0.604014 2_2:-43482103 None:intergenic
AGTGGAATACATTACCGGAA+TGG 0.608509 2_2:+43481989 Msa0252440:CDS
TCTACACACCGTTTATGTCG+AGG 0.610087 2_2:-43482497 None:intergenic
ATACTATAACAAAACAGCTG+AGG 0.633616 2_2:-43482359 None:intergenic
AATGGGGAGAGATTTGAAGG+AGG 0.634987 2_2:+43482424 Msa0252440:CDS
GTCTTGTATCTAGAATCTAT+CGG 0.638166 2_2:+43481894 Msa0252440:CDS
GAGTGAAGGATTTGGGAATG+TGG 0.645827 2_2:-43480420 None:intergenic
GGTGGGAGTGTGTTCTGGAA+CGG 0.663260 2_2:-43480262 None:intergenic
TCTGAGCTAAGGAACACCAA+AGG 0.675119 2_2:-43482789 None:intergenic
TCACGGCCAGCACACCACAA+AGG 0.684243 2_2:-43482626 None:intergenic
GTAGCTCTGACAAAGAAGGT+AGG 0.686492 2_2:-43480502 None:intergenic
GGAACATCGATGTAGTGTCA+CGG 0.693137 2_2:-43482328 None:intergenic
TCCGGTAATGTATTCCACTG+TGG 0.695997 2_2:-43481985 None:intergenic
ACATTGCAAATGATCAACCG+AGG 0.728440 2_2:-43482161 None:intergenic
AAACCAGTATCACTGTTGGG+AGG 0.748317 2_2:-43481861 None:intergenic
TGGTGATCGGTGGAAAACAA+GGG 0.748516 2_2:-43480400 None:intergenic
TGACGATATAAAATCCACAG+TGG 0.749902 2_2:+43481971 Msa0252440:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATTGAAATTGAAAATTT+GGG - chr2_2:43480304-43480323 None:intergenic 10.0%
!! AAATATTGAAATTGAAAATT+TGG - chr2_2:43480305-43480324 None:intergenic 10.0%
!!! ATAATTTAGATTTTTATTAC+TGG + chr2_2:43480691-43480710 Msa0252440:intron 10.0%
!!! TAATTTAGATTTTTATTACT+GGG + chr2_2:43480692-43480711 Msa0252440:intron 10.0%
!! TTATAGTATTAAGAATAATT+TGG + chr2_2:43482373-43482392 Msa0252440:CDS 10.0%
!!! AAGTTTTCATTTTTATTACT+GGG + chr2_2:43480605-43480624 Msa0252440:intron 15.0%
!!! AAGTTTTCATTTTTATTACT+GGG + chr2_2:43480605-43480624 Msa0252440:intron 15.0%
!! TTATTCAATTCAATTAGTAA+AGG - chr2_2:43480867-43480886 None:intergenic 15.0%
!!! TAGTTGATTTTAATAGTTTA+GGG - chr2_2:43481020-43481039 None:intergenic 15.0%
!!! TTAGTTGATTTTAATAGTTT+AGG - chr2_2:43481019-43481038 None:intergenic 15.0%
!! AACTATTAAAATCAACTAAA+AGG + chr2_2:43480937-43480956 Msa0252440:intron 15.0%
!! AACTATTAAAATCAACTAAA+AGG - chr2_2:43480937-43480956 None:intergenic 15.0%
!!! TTAGTTGATTTTAATAGTTT+AGG + chr2_2:43481019-43481038 Msa0252440:intron 15.0%
!!! TAGTTGATTTTAATAGTTTA+GGG + chr2_2:43481020-43481039 Msa0252440:intron 15.0%
!! ACTAAATTGACATTATATTA+CGG + chr2_2:43481073-43481092 Msa0252440:intron 15.0%
!!! ATTTTGCTTATATTTTGAAA+CGG - chr2_2:43481374-43481393 None:intergenic 15.0%
!!! ATTTTGCTTATATTTTGAAA+CGG + chr2_2:43481374-43481393 Msa0252440:intron 15.0%
!!! ATTGAATACTTTGAAAATAT+TGG + chr2_2:43482296-43482315 Msa0252440:CDS 15.0%
!!! CAAGTTTTCATTTTTATTAC+TGG + chr2_2:43480604-43480623 Msa0252440:intron 20.0%
!!! CAAGTTTTCATTTTTATTAC+TGG + chr2_2:43480604-43480623 Msa0252440:intron 20.0%
!!! TTTGGTTAGGATTTTATTAA+CGG + chr2_2:43481100-43481119 Msa0252440:intron 20.0%
!!! ATTTTATTAACGGATGTAAA+TGG + chr2_2:43481110-43481129 Msa0252440:intron 20.0%
!!! ATAAGCAAAATTCACTTTTT+AGG + chr2_2:43481276-43481295 Msa0252440:intron 20.0%
!!! ATAAGCAAAATTCACTTTTT+AGG - chr2_2:43481276-43481295 None:intergenic 20.0%
!! TTAATTTCATGCTTTAGTAA+AGG + chr2_2:43481718-43481737 Msa0252440:intron 20.0%
!!! TTTTGTGACTTTTTCTTTTA+TGG + chr2_2:43482694-43482713 Msa0252440:three_prime_UTR 20.0%
!!! TTTTATGGATAGATAATGTT+AGG + chr2_2:43482709-43482728 Msa0252440:three_prime_UTR 20.0%
! GCTTAATAATGCTAAAGTTT+AGG + chr2_2:43480549-43480568 Msa0252440:intron 25.0%
!!! AAAGTTTAGGTTTTTCTTAC+TGG + chr2_2:43480562-43480581 Msa0252440:intron 25.0%
!!! AAGTTTAGGTTTTTCTTACT+GGG + chr2_2:43480563-43480582 Msa0252440:intron 25.0%
! TTAAGCACTTAAAAACCAAA+GGG - chr2_2:43480805-43480824 None:intergenic 25.0%
! ATTAAGCACTTAAAAACCAA+AGG - chr2_2:43480806-43480825 None:intergenic 25.0%
! TAATAGTTTAGGGACTAAAT+TGG - chr2_2:43480925-43480944 None:intergenic 25.0%
! ACCAAATTGACAAATAGTTT+AGG + chr2_2:43481043-43481062 Msa0252440:intron 25.0%
! CCAAATTGACAAATAGTTTA+GGG + chr2_2:43481044-43481063 Msa0252440:intron 25.0%
! CATTCATTTAATGATGTATG+TGG + chr2_2:43481301-43481320 Msa0252440:intron 25.0%
! CATTCATTTAATGATGTATG+TGG - chr2_2:43481301-43481320 None:intergenic 25.0%
! CAGTAAAGTTTATCATGTAA+CGG - chr2_2:43481649-43481668 None:intergenic 25.0%
! TGTCAATAACATACTTTCTT+TGG + chr2_2:43481669-43481688 Msa0252440:intron 25.0%
! GAAATTAATGTGCATTTAAC+AGG - chr2_2:43481706-43481725 None:intergenic 25.0%
! ATGTATTACAGGTTGTAAAA+TGG + chr2_2:43481817-43481836 Msa0252440:intron 25.0%
!!! TTTTCAAAGTATTCAATTCG+AGG - chr2_2:43482293-43482312 None:intergenic 25.0%
! ACCACAAAGTAATTGTATTT+AGG - chr2_2:43482401-43482420 None:intergenic 25.0%
! TAAATACAATTACTTTGTGG+TGG + chr2_2:43482400-43482419 Msa0252440:CDS 25.0%
! AAGCTAAATGAGAAATAATG+AGG - chr2_2:43482461-43482480 None:intergenic 25.0%
!!! TCACTAGTCTTTAATAACAA+AGG - chr2_2:43482545-43482564 None:intergenic 25.0%
! TCTATACTTGATCAATATCA+CGG - chr2_2:43482646-43482665 None:intergenic 25.0%
! AAGAAAAAGTCACAAAAACA+AGG - chr2_2:43482691-43482710 None:intergenic 25.0%
!! GAATGAAGAATTGGTGTTAA+TGG - chr2_2:43480337-43480356 None:intergenic 30.0%
!!! AGAGCACATTTTGGTTATTA+GGG - chr2_2:43480365-43480384 None:intergenic 30.0%
AGCATTATTAAGCAGAATTG+AGG - chr2_2:43480542-43480561 None:intergenic 30.0%
CCCTAAACTATTTGTCAATT+TGG - chr2_2:43481047-43481066 None:intergenic 30.0%
ACATTATATTACGGTGTGTT+TGG + chr2_2:43481082-43481101 Msa0252440:intron 30.0%
!!! TGCTTATATTTTGAAACGGA+GGG - chr2_2:43481378-43481397 None:intergenic 30.0%
!!! TTGCTTATATTTTGAAACGG+AGG - chr2_2:43481377-43481396 None:intergenic 30.0%
GATGTATGTGGTTCATAATA+TGG - chr2_2:43481328-43481347 None:intergenic 30.0%
!!! TTGCTTATATTTTGAAACGG+AGG + chr2_2:43481377-43481396 Msa0252440:intron 30.0%
!!! TGCTTATATTTTGAAACGGA+GGG + chr2_2:43481378-43481397 Msa0252440:intron 30.0%
GGAGTAAAAAACTTGATCAA+TGG + chr2_2:43481475-43481494 Msa0252440:intron 30.0%
ATTAATGTGCATTTAACAGG+AGG - chr2_2:43481703-43481722 None:intergenic 30.0%
TATTTGCTTGCATGTTGAAT+TGG + chr2_2:43481748-43481767 Msa0252440:intron 30.0%
!! TGATACTGGTTTCCAAAAAA+AGG + chr2_2:43481872-43481891 Msa0252440:CDS 30.0%
!!! CTAGATACAAGACCTTTTTT+TGG - chr2_2:43481887-43481906 None:intergenic 30.0%
! GTCTTGTATCTAGAATCTAT+CGG + chr2_2:43481894-43481913 Msa0252440:CDS 30.0%
ATTTCTCTGCAATTGAGTTT+CGG + chr2_2:43482012-43482031 Msa0252440:CDS 30.0%
ATACTATAACAAAACAGCTG+AGG - chr2_2:43482362-43482381 None:intergenic 30.0%
GCCTAAATACAATTACTTTG+TGG + chr2_2:43482397-43482416 Msa0252440:CDS 30.0%
! AATTACTTTGTGGTGGAAAT+GGG + chr2_2:43482407-43482426 Msa0252440:CDS 30.0%
! TCTCATTTAGCTTAGAGAAT+AGG + chr2_2:43482468-43482487 Msa0252440:CDS 30.0%
GTCTTTAATAACAAAGGAAG+AGG - chr2_2:43482539-43482558 None:intergenic 30.0%
AGATAATGTTAGGAAGTTAG+TGG + chr2_2:43482719-43482738 Msa0252440:three_prime_UTR 30.0%
! TAGTGGTTATGTTAGTTTAC+AGG + chr2_2:43482736-43482755 Msa0252440:three_prime_UTR 30.0%
! AGTGGTTATGTTAGTTTACA+GGG + chr2_2:43482737-43482756 Msa0252440:three_prime_UTR 30.0%
AGGGATAGAGAATGAAGAAT+TGG - chr2_2:43480346-43480365 None:intergenic 35.0%
!!! CAGAGCACATTTTGGTTATT+AGG - chr2_2:43480366-43480385 None:intergenic 35.0%
TAAGCAGAATTGAGGTTGAA+AGG - chr2_2:43480534-43480553 None:intergenic 35.0%
! GCTCGTAGATGATTGTATTT+TGG + chr2_2:43480767-43480786 Msa0252440:intron 35.0%
CTTAATGATTCCATGCTATC+AGG + chr2_2:43480820-43480839 Msa0252440:intron 35.0%
ACATAACTATCCTGATAGCA+TGG - chr2_2:43480833-43480852 None:intergenic 35.0%
ATGCTATCAGGATAGTTATG+TGG + chr2_2:43480832-43480851 Msa0252440:intron 35.0%
GTCCATAAACTATACTCTCA+GGG + chr2_2:43480959-43480978 Msa0252440:intron 35.0%
TATACTCCCATCCATCAATT+TGG - chr2_2:43480986-43481005 None:intergenic 35.0%
! ATGGATGGGAGTATAGTTTA+AGG + chr2_2:43480991-43481010 Msa0252440:intron 35.0%
TGACAAATAGTTTAGGGACT+AGG + chr2_2:43481050-43481069 Msa0252440:intron 35.0%
ATATTACGGTGTGTTTGGTT+AGG + chr2_2:43481087-43481106 Msa0252440:intron 35.0%
AACAATAGTTGAGCAAAAGG+AGG - chr2_2:43481140-43481159 None:intergenic 35.0%
! TCCTTTTGCTCAACTATTGT+TGG + chr2_2:43481139-43481158 Msa0252440:intron 35.0%
TCCAACAATAGTTGAGCAAA+AGG - chr2_2:43481143-43481162 None:intergenic 35.0%
GCTACAGAGCATAAAACTAA+GGG - chr2_2:43481192-43481211 None:intergenic 35.0%
TCTATAGCTTCTTGGTCTAA+TGG - chr2_2:43481455-43481474 None:intergenic 35.0%
ATTAGACCAAGAAGCTATAG+AGG + chr2_2:43481454-43481473 Msa0252440:intron 35.0%
TTTACTCCTCTATAGCTTCT+TGG - chr2_2:43481463-43481482 None:intergenic 35.0%
ACTTGATCAATGGTTCACTT+AGG + chr2_2:43481485-43481504 Msa0252440:intron 35.0%
GAAAGCAATATGCATATCAG+AGG - chr2_2:43481594-43481613 None:intergenic 35.0%
TATTGAAAATCATCCGAAGC+TGG + chr2_2:43481935-43481954 Msa0252440:CDS 35.0%
TGACGATATAAAATCCACAG+TGG + chr2_2:43481971-43481990 Msa0252440:CDS 35.0%
AATTGCAGAGAAATCCATTC+CGG - chr2_2:43482006-43482025 None:intergenic 35.0%
! TATAATGTCTGAGACTTTGG+TGG - chr2_2:43482069-43482088 None:intergenic 35.0%
ATGTAATAAATCGTCGTCCT+CGG + chr2_2:43482144-43482163 Msa0252440:CDS 35.0%
ATGTACTTCCTCCAAAGTAT+TGG + chr2_2:43482206-43482225 Msa0252440:CDS 35.0%
GACACTACATGATAGCAAAT+GGG - chr2_2:43482255-43482274 None:intergenic 35.0%
AAAACAGCTGAGGAAATCTT+CGG - chr2_2:43482352-43482371 None:intergenic 35.0%
! CAATTACTTTGTGGTGGAAA+TGG + chr2_2:43482406-43482425 Msa0252440:CDS 35.0%
! ATTACTTTGTGGTGGAAATG+GGG + chr2_2:43482408-43482427 Msa0252440:CDS 35.0%
ACATAAACGGTGTGTAGAAA+TGG + chr2_2:43482502-43482521 Msa0252440:CDS 35.0%
CATAAACGGTGTGTAGAAAT+GGG + chr2_2:43482503-43482522 Msa0252440:CDS 35.0%
! CACAAAGGAGATGTTTTCAA+GGG - chr2_2:43482614-43482633 None:intergenic 35.0%
TGGTATCAAAATCTGAGCTA+AGG - chr2_2:43482803-43482822 None:intergenic 35.0%
! GTTACTAGTGTTGAGATGGT+GGG - chr2_2:43480282-43480301 None:intergenic 40.0%
! TTGGGTTACTAGTGTTGAGA+TGG - chr2_2:43480286-43480305 None:intergenic 40.0%
TCTGCAAACCCTTTCATTCT+AGG + chr2_2:43480446-43480465 Msa0252440:CDS 40.0%
CTGCAAACCCTTTCATTCTA+GGG + chr2_2:43480447-43480466 Msa0252440:CDS 40.0%
GTAGGAACCCTAGAATGAAA+GGG - chr2_2:43480457-43480476 None:intergenic 40.0%
AGTAGGAACCCTAGAATGAA+AGG - chr2_2:43480458-43480477 None:intergenic 40.0%
GAATGGAAGGAAATGGAAGT+AGG - chr2_2:43480475-43480494 None:intergenic 40.0%
TCGTGAAGAATGGAAGGAAA+TGG - chr2_2:43480482-43480501 None:intergenic 40.0%
TACCTTCTTTGTCAGAGCTA+CGG + chr2_2:43480504-43480523 Msa0252440:CDS 40.0%
TGGTGAGAGAGTGATAGTTT+AGG - chr2_2:43480905-43480924 None:intergenic 40.0%
GGTCCATAAACTATACTCTC+AGG + chr2_2:43480958-43480977 Msa0252440:intron 40.0%
! GTCCCTGAGAGTATAGTTTA+TGG - chr2_2:43480964-43480983 None:intergenic 40.0%
CGCTACAGAGCATAAAACTA+AGG - chr2_2:43481193-43481212 None:intergenic 40.0%
ATCCTCCGTCGAAAGAATAA+GGG - chr2_2:43481222-43481241 None:intergenic 40.0%
GTAGTCAGTATAGGATGGAT+GGG - chr2_2:43481619-43481638 None:intergenic 40.0%
AGTAGTCAGTATAGGATGGA+TGG - chr2_2:43481620-43481639 None:intergenic 40.0%
ACTCAGTAGTCAGTATAGGA+TGG - chr2_2:43481624-43481643 None:intergenic 40.0%
GGATACTCAGTAGTCAGTAT+AGG - chr2_2:43481628-43481647 None:intergenic 40.0%
! CTGTAATACATCAGAAGCAC+AGG - chr2_2:43481808-43481827 None:intergenic 40.0%
CTGTGCTTCTGATGTATTAC+AGG + chr2_2:43481806-43481825 Msa0252440:intron 40.0%
TTGGGAGGTAGAGTTTGATT+TGG - chr2_2:43481849-43481868 None:intergenic 40.0%
TGGAAACCAGTATCACTGTT+GGG - chr2_2:43481867-43481886 None:intergenic 40.0%
TTGGAAACCAGTATCACTGT+TGG - chr2_2:43481868-43481887 None:intergenic 40.0%
TCCACAGTGGAATACATTAC+CGG + chr2_2:43481984-43482003 Msa0252440:CDS 40.0%
AGTGGAATACATTACCGGAA+TGG + chr2_2:43481989-43482008 Msa0252440:CDS 40.0%
! ACTTTGGTGGTAAGAATCTC+CGG - chr2_2:43482056-43482075 None:intergenic 40.0%
! GGGTATAATGTCTGAGACTT+TGG - chr2_2:43482072-43482091 None:intergenic 40.0%
ACATTGCAAATGATCAACCG+AGG - chr2_2:43482164-43482183 None:intergenic 40.0%
! CTTTGGAGGAAGTACATAGT+AGG - chr2_2:43482203-43482222 None:intergenic 40.0%
CTTCTATGCCAATACTTTGG+AGG - chr2_2:43482217-43482236 None:intergenic 40.0%
CCTCTTCTATGCCAATACTT+TGG - chr2_2:43482220-43482239 None:intergenic 40.0%
!! CCAAAGTATTGGCATAGAAG+AGG + chr2_2:43482217-43482236 Msa0252440:CDS 40.0%
CGACACTACATGATAGCAAA+TGG - chr2_2:43482256-43482275 None:intergenic 40.0%
GGATTAAGCCTCGACATAAA+CGG + chr2_2:43482489-43482508 Msa0252440:CDS 40.0%
! CCACAAAGGAGATGTTTTCA+AGG - chr2_2:43482615-43482634 None:intergenic 40.0%
CCTTGAAAACATCTCCTTTG+TGG + chr2_2:43482612-43482631 Msa0252440:CDS 40.0%
!!! ACACCAAAGGAGTTTTAAGC+AGG - chr2_2:43482779-43482798 None:intergenic 40.0%
! GTGATGTGAAGTGGTTGTTT+TGG - chr2_2:43482823-43482842 None:intergenic 40.0%
AACGGAGATTGGAGAAGTGA+TGG - chr2_2:43480247-43480266 None:intergenic 45.0%
! GGTTACTAGTGTTGAGATGG+TGG - chr2_2:43480283-43480302 None:intergenic 45.0%
!! AAACAAGGGTGTTGTAGCAG+TGG - chr2_2:43480389-43480408 None:intergenic 45.0%
TGGTGATCGGTGGAAAACAA+GGG - chr2_2:43480403-43480422 None:intergenic 45.0%
GGATTTGGGAATGTGGTGAT+CGG - chr2_2:43480416-43480435 None:intergenic 45.0%
GAGTGAAGGATTTGGGAATG+TGG - chr2_2:43480423-43480442 None:intergenic 45.0%
CAGAGACGAGTGAAGGATTT+GGG - chr2_2:43480430-43480449 None:intergenic 45.0%
AGAAGGTAGGTCGTGAAGAA+TGG - chr2_2:43480492-43480511 None:intergenic 45.0%
!! GTAGCTCTGACAAAGAAGGT+AGG - chr2_2:43480505-43480524 None:intergenic 45.0%
!! AACCGTAGCTCTGACAAAGA+AGG - chr2_2:43480509-43480528 None:intergenic 45.0%
TGGACAACATTGCTACCCTT+TGG + chr2_2:43480787-43480806 Msa0252440:intron 45.0%
ACTCTCAGGGACCAAATTGA+TGG + chr2_2:43480972-43480991 Msa0252440:intron 45.0%
TCAGGGACCAAATTGATGGA+TGG + chr2_2:43480976-43480995 Msa0252440:intron 45.0%
! CAGGGACCAAATTGATGGAT+GGG + chr2_2:43480977-43480996 Msa0252440:intron 45.0%
TGCGACCCTTATTCTTTCGA+CGG + chr2_2:43481214-43481233 Msa0252440:intron 45.0%
CATCCTCCGTCGAAAGAATA+AGG - chr2_2:43481223-43481242 None:intergenic 45.0%
TCCTCGTGATATCAGTTCTC+TGG + chr2_2:43481563-43481582 Msa0252440:intron 45.0%
ACCAGAGAACTGATATCACG+AGG - chr2_2:43481567-43481586 None:intergenic 45.0%
AAACCAGTATCACTGTTGGG+AGG - chr2_2:43481864-43481883 None:intergenic 45.0%
TCCGGTAATGTATTCCACTG+TGG - chr2_2:43481988-43482007 None:intergenic 45.0%
TGCAATTGAGTTTCGGCGTT+TGG + chr2_2:43482019-43482038 Msa0252440:CDS 45.0%
ATTGAGTTTCGGCGTTTGGT+TGG + chr2_2:43482023-43482042 Msa0252440:CDS 45.0%
! CTTTGGTGGTAAGAATCTCC+GGG - chr2_2:43482055-43482074 None:intergenic 45.0%
TTACACGAACTTCTCGGTGA+AGG - chr2_2:43482106-43482125 None:intergenic 45.0%
AGCCACTTACACGAACTTCT+CGG - chr2_2:43482112-43482131 None:intergenic 45.0%
GGAACATCGATGTAGTGTCA+CGG - chr2_2:43482331-43482350 None:intergenic 45.0%
GGAAATGGGGAGAGATTTGA+AGG + chr2_2:43482421-43482440 Msa0252440:CDS 45.0%
AATGGGGAGAGATTTGAAGG+AGG + chr2_2:43482424-43482443 Msa0252440:CDS 45.0%
TCTACACACCGTTTATGTCG+AGG - chr2_2:43482500-43482519 None:intergenic 45.0%
!!! CCAAAGGAGTTTTAAGCAGG+AGG - chr2_2:43482776-43482795 None:intergenic 45.0%
CCTCCTGCTTAAAACTCCTT+TGG + chr2_2:43482773-43482792 Msa0252440:three_prime_UTR 45.0%
TCTGAGCTAAGGAACACCAA+AGG - chr2_2:43482792-43482811 None:intergenic 45.0%
!! GTGTGTTCTGGAACGGAGAT+TGG - chr2_2:43480258-43480277 None:intergenic 50.0%
! AGCAGTGGCAGAGCACATTT+TGG - chr2_2:43480374-43480393 None:intergenic 50.0%
GTGGTGATCGGTGGAAAACA+AGG - chr2_2:43480404-43480423 None:intergenic 50.0%
TTTGGGAATGTGGTGATCGG+TGG - chr2_2:43480413-43480432 None:intergenic 50.0%
GCAGAGACGAGTGAAGGATT+TGG - chr2_2:43480431-43480450 None:intergenic 50.0%
GGTAGGTCGTGAAGAATGGA+AGG - chr2_2:43480488-43480507 None:intergenic 50.0%
GACCCTTATTCTTTCGACGG+AGG + chr2_2:43481217-43481236 Msa0252440:intron 50.0%
CTACCTCCCAACAGTGATAC+TGG + chr2_2:43481858-43481877 Msa0252440:CDS 50.0%
AGTGACGCAGTAACCAGCTT+CGG - chr2_2:43481951-43481970 None:intergenic 50.0%
TCGGTGAAGGAACGTGAAGA+CGG - chr2_2:43482093-43482112 None:intergenic 50.0%
CACCGAGAAGTTCGTGTAAG+TGG + chr2_2:43482107-43482126 Msa0252440:CDS 50.0%
ACATCTCCTTTGTGGTGTGC+TGG + chr2_2:43482620-43482639 Msa0252440:CDS 50.0%
!! GGTGGGAGTGTGTTCTGGAA+CGG - chr2_2:43480265-43480284 None:intergenic 55.0%
!! GAGATGGTGGGAGTGTGTTC+TGG - chr2_2:43480270-43480289 None:intergenic 55.0%
GGGTTTGCAGAGACGAGTGA+AGG - chr2_2:43480437-43480456 None:intergenic 55.0%
CGGTGAAGGAACGTGAAGAC+GGG - chr2_2:43482092-43482111 None:intergenic 55.0%
GCGTTTGGTTGGCATGTGCC+CGG + chr2_2:43482034-43482053 Msa0252440:CDS 60.0%
TCACGGCCAGCACACCACAA+AGG - chr2_2:43482629-43482648 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 43480239 43482846 43480239 ID=Msa0252440;Name=Msa0252440
chr2_2 mRNA 43480239 43482846 43480239 ID=Msa0252440-mRNA-1;Parent=Msa0252440;Name=Msa0252440-mRNA-1;_AED=0.01;_eAED=0.01;_QI=137|1|1|1|1|1|2|182|328
chr2_2 exon 43480239 43480525 43480239 ID=Msa0252440-mRNA-1:exon:13448;Parent=Msa0252440-mRNA-1
chr2_2 exon 43481828 43482846 43481828 ID=Msa0252440-mRNA-1:exon:13449;Parent=Msa0252440-mRNA-1
chr2_2 five_prime_UTR 43480239 43480375 43480239 ID=Msa0252440-mRNA-1:five_prime_utr;Parent=Msa0252440-mRNA-1
chr2_2 CDS 43480376 43480525 43480376 ID=Msa0252440-mRNA-1:cds;Parent=Msa0252440-mRNA-1
chr2_2 CDS 43481828 43482664 43481828 ID=Msa0252440-mRNA-1:cds;Parent=Msa0252440-mRNA-1
chr2_2 three_prime_UTR 43482665 43482846 43482665 ID=Msa0252440-mRNA-1:three_prime_utr;Parent=Msa0252440-mRNA-1
Gene Sequence

>Msa0252440

ATGTGCTCTGCCACTGCTACAACACCCTTGTTTTCCACCGATCACCACATTCCCAAATCCTTCACTCGTCTCTGCAAACCCTTTCATTCTAGGGTTCCTACTTCCATTTCCTTCCATTCTTCACGACCTACCTTCTTTGTCAGAGCTACGGTTGTAAAATGGCGATGTCCAAATCAAACTCTACCTCCCAACAGTGATACTGGTTTCCAAAAAAAGGTCTTGTATCTAGAATCTATCGGTATTGACTCTTTCTCATTTATTGAAAATCATCCGAAGCTGGTTACTGCGTCACTTGACGATATAAAATCCACAGTGGAATACATTACCGGAATGGATTTCTCTGCAATTGAGTTTCGGCGTTTGGTTGGCATGTGCCCGGAGATTCTTACCACCAAAGTCTCAGACATTATACCCGTCTTCACGTTCCTTCACCGAGAAGTTCGTGTAAGTGGCTCAAATATCAAGCATGTAATAAATCGTCGTCCTCGGTTGATCATTTGCAATGTTGATAAGCAACTTCGTCCTACTATGTACTTCCTCCAAAGTATTGGCATAGAAGAGGTAAACAAGCACACCCATTTGCTATCATGTAGTGTCGAAGACAAGTTTATACCTCGAATTGAATACTTTGAAAATATTGGATTCTCTCGCCGTGACACTACATCGATGTTCCGAAGATTTCCTCAGCTGTTTTGTTATAGTATTAAGAATAATTTGGAGCCTAAATACAATTACTTTGTGGTGGAAATGGGGAGAGATTTGAAGGAGGTGAAAGAATTTCCTCATTATTTCTCATTTAGCTTAGAGAATAGGATTAAGCCTCGACATAAACGGTGTGTAGAAATGGGTGTGTGTTTTCCTCTTCCTTTGTTATTAAAGACTAGTGAAGTTGCATTTCAGAATAGATTAGAAGCATTTGTAAATTCTTCAACACCCTTGAAAACATCTCCTTTGTGGTGTGCTGGCCGTGATATTGATCAAGTATAG

Protein sequence

>Msa0252440

MCSATATTPLFSTDHHIPKSFTRLCKPFHSRVPTSISFHSSRPTFFVRATVVKWRCPNQTLPPNSDTGFQKKVLYLESIGIDSFSFIENHPKLVTASLDDIKSTVEYITGMDFSAIEFRRLVGMCPEILTTKVSDIIPVFTFLHREVRVSGSNIKHVINRRPRLIICNVDKQLRPTMYFLQSIGIEEVNKHTHLLSCSVEDKFIPRIEYFENIGFSRRDTTSMFRRFPQLFCYSIKNNLEPKYNYFVVEMGRDLKEVKEFPHYFSFSLENRIKPRHKRCVEMGVCFPLPLLLKTSEVAFQNRLEAFVNSSTPLKTSPLWCAGRDIDQV*