AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0076600

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0076600 MtrunA17_Chr1g0185581 95.479 929 26 4 1 926 1 916 0.0 1788
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0076600 AT1G03160.1 55.060 919 385 12 12 926 12 906 0.0 985
Msa0076600 AT1G03160.4 52.775 919 377 13 12 926 12 877 0.0 922
Msa0076600 AT1G03160.2 56.479 710 281 12 12 717 12 697 0.0 760
Msa0076600 AT1G03160.3 57.163 698 271 12 12 705 12 685 0.0 753

Find 223 sgRNAs with CRISPR-Local

Find 413 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGGCTTGGGCTTGGGCCTT+AGG 0.156752 1_2:-52763310 None:intergenic
TTCTGGGTTGGGCTTGGGCT+TGG 0.176037 1_2:-52763318 None:intergenic
GACTGAAGCAGTAGAAAATT+TGG 0.183151 1_2:+52768362 Msa0076600:CDS
CTCAGGACACATGAAGATTT+TGG 0.203758 1_2:-52768512 None:intergenic
TCTGGGTTGGGCTTGGGCTT+GGG 0.217089 1_2:-52763317 None:intergenic
GATTGACGAGCCGTTCTTAT+TGG 0.233034 1_2:+52764360 Msa0076600:CDS
ACCACCACTTTGTTCATTAC+TGG 0.240361 1_2:-52763491 None:intergenic
AGAGTGTTCTGGGTTGGGCT+TGG 0.242167 1_2:-52763324 None:intergenic
CTCAAGCTCGTAAAAGCTAT+TGG 0.253669 1_2:-52766001 None:intergenic
GTTACTAGTTTGGAAAGTTT+TGG 0.255026 1_2:+52763931 Msa0076600:CDS
TCCTTCTGTGTCATCTGTTC+AGG 0.271301 1_2:+52766505 Msa0076600:CDS
GAGTGTTCTGGGTTGGGCTT+GGG 0.273184 1_2:-52763323 None:intergenic
CATACCTCACTTCCAGTTAA+AGG 0.273809 1_2:-52765379 None:intergenic
TACTTGGAGATTATGCAAAT+TGG 0.273856 1_2:+52766771 Msa0076600:CDS
GCTTCGAGTTTACTTGCTTC+TGG 0.273889 1_2:+52763895 Msa0076600:CDS
ATTAATGATTTCCTGGAATA+GGG 0.274023 1_2:-52768658 None:intergenic
GAAGAGGAGGGAGGGAGATA+TGG 0.274707 1_2:-52763079 None:intergenic
TTCATGTGTCCTGAGTTCTT+TGG 0.283565 1_2:+52768520 Msa0076600:exon
ACTGTGATTAATGCGCTTCT+TGG 0.287328 1_2:+52764985 Msa0076600:CDS
TCATGTGTCCTGAGTTCTTT+GGG 0.289607 1_2:+52768521 Msa0076600:exon
CCTTGTATATTCTCCCTTGT+TGG 0.292272 1_2:-52766811 None:intergenic
GATTTGTTAAACTGGAAGAT+AGG 0.296689 1_2:+52764103 Msa0076600:CDS
GGAATAAGAAGGGGTTATTA+TGG 0.296999 1_2:-52763155 None:intergenic
GGAAGCAATGTCCTTCATTA+AGG 0.301311 1_2:+52765831 Msa0076600:CDS
AAAATCAGCACCTTCAGATT+TGG 0.302212 1_2:-52763749 None:intergenic
GGGGTGAAGAAGGGAGTAGG+AGG 0.308927 1_2:-52763180 None:intergenic
CTTATGGCTACCTCTAGTTT+CGG 0.318047 1_2:+52765931 Msa0076600:CDS
AATCACAATTCCAACCGATT+TGG 0.321017 1_2:-52763464 None:intergenic
GAAATGACGAGAGGCATTAT+TGG 0.321253 1_2:-52763284 None:intergenic
CTCCACAACACGTGATTTAG+TGG 0.321750 1_2:-52766369 None:intergenic
TTGGAAGATCTTCTTGCTCT+TGG 0.322078 1_2:+52768020 Msa0076600:CDS
TGACTTACTTCTCTAAGAAT+TGG 0.324069 1_2:-52765141 None:intergenic
TGGGAAGAGTGTTCTGGGTT+GGG 0.324250 1_2:-52763329 None:intergenic
TTCAGTCAAATCCCTCTTCA+TGG 0.324417 1_2:-52768346 None:intergenic
ACCGCCTGGGAAGAGTGTTC+TGG 0.324654 1_2:-52763335 None:intergenic
TGGAAAATGAGAGCCTTTCT+TGG 0.326351 1_2:+52766226 Msa0076600:CDS
GATTAATGATTTCCTGGAAT+AGG 0.331902 1_2:-52768659 None:intergenic
CTTGGTCAACTAGGAGTTGC+TGG 0.344665 1_2:+52767957 Msa0076600:CDS
TTATGGCTACCTCTAGTTTC+GGG 0.345941 1_2:+52765932 Msa0076600:CDS
TTATATGATTAATGATTTCC+TGG 0.345972 1_2:-52768665 None:intergenic
TCAGCTGATCGCCCTTTAAC+TGG 0.347584 1_2:+52765367 Msa0076600:CDS
GGAGAAACAGTTAATAGAAA+TGG 0.348551 1_2:+52764125 Msa0076600:CDS
CTTGTATATTCTCCCTTGTT+GGG 0.350679 1_2:-52766810 None:intergenic
TGCTCTTGAAGCAAAACTTA+TGG 0.354047 1_2:+52765915 Msa0076600:CDS
TTCCTTCGTAAATTATTTGA+TGG 0.357226 1_2:+52763970 Msa0076600:CDS
GCCTATTCTGCGCCTGATCT+TGG 0.360092 1_2:-52768416 None:intergenic
GATACCTTTGTGAGAGTCAT+TGG 0.361581 1_2:+52768384 Msa0076600:CDS
AGAAGGGGTTATTATGGAAC+AGG 0.364716 1_2:-52763149 None:intergenic
TCAGTCTCTGGTTCTCAATA+TGG 0.366476 1_2:+52765976 Msa0076600:CDS
GGGCTTGGGCTTGGGCCTTA+GGG 0.369528 1_2:-52763309 None:intergenic
AGGGGATCAAGCTGGCTATC+AGG 0.372164 1_2:+52766913 Msa0076600:CDS
ATGGTAGGGAGGGGTGAAGA+AGG 0.377317 1_2:-52763190 None:intergenic
GGGTGTAAGGGATGGTAGGG+AGG 0.382689 1_2:-52763201 None:intergenic
AGGTGTGGATAGCGAGAGAA+GGG 0.383193 1_2:-52763223 None:intergenic
TGAAGGATTACATTAGTTCC+AGG 0.384158 1_2:-52765283 None:intergenic
GTTGCTAGGAATACAATGTT+AGG 0.385672 1_2:+52763652 Msa0076600:CDS
TGTGGGTGGATTTGTTAAAC+TGG 0.386432 1_2:+52764095 Msa0076600:CDS
TCAAGCTCGTAAAAGCTATT+GGG 0.388699 1_2:-52766000 None:intergenic
TCGATGTGCCAAGCAGGATT+TGG 0.389874 1_2:+52766155 Msa0076600:CDS
TGAAGAAGGGAGTAGGAGGG+AGG 0.396511 1_2:-52763176 None:intergenic
GAATGGAGAGTGCGGCGAAA+AGG 0.399526 1_2:-52763247 None:intergenic
AAGAACCACCAATTCGCTAT+TGG 0.400572 1_2:-52763677 None:intergenic
AGAGTAGGGACTTTGAGTTC+AGG 0.404816 1_2:-52763367 None:intergenic
TAGCAAATATATTGACCATC+TGG 0.411722 1_2:-52765108 None:intergenic
CTGGGAAGAGTGTTCTGGGT+TGG 0.413522 1_2:-52763330 None:intergenic
ACCATGGATATTTGATTTGA+AGG 0.418040 1_2:-52763124 None:intergenic
ATGTCCTTGAACCCTATTCC+AGG 0.418990 1_2:+52768647 Msa0076600:three_prime_UTR
GAAGAATTGTTGTCAGTCTC+TGG 0.420560 1_2:+52765964 Msa0076600:CDS
CCGCCTGGGAAGAGTGTTCT+GGG 0.424450 1_2:-52763334 None:intergenic
TTCGTAAATTATTTGATGGT+GGG 0.427307 1_2:+52763974 Msa0076600:CDS
ATTCGCCACGTGTAAGAATC+TGG 0.429208 1_2:-52763411 None:intergenic
CGATAAAGCAGTTTCCAAAT+CGG 0.432609 1_2:+52763450 Msa0076600:CDS
CTTTACGTTGTCCTTAATGA+AGG 0.432690 1_2:-52765842 None:intergenic
CTTATTTATGGTGGTGGTGG+CGG 0.433664 1_2:+52763772 Msa0076600:CDS
AGTAGGAGGGAGGAATAAGA+AGG 0.433949 1_2:-52763166 None:intergenic
CGAATTGGTGGTTCTTCCAT+TGG 0.436292 1_2:+52763684 Msa0076600:CDS
GCTCTTGGAATTTGTTCTGT+TGG 0.439392 1_2:+52768035 Msa0076600:CDS
TGAGTTGGAGAATGAGAGTA+GGG 0.440641 1_2:-52763381 None:intergenic
CATATGAGTTGCTAAAGAAA+GGG 0.444121 1_2:+52766894 Msa0076600:CDS
GAGGTGTGGATAGCGAGAGA+AGG 0.445791 1_2:-52763224 None:intergenic
ACCAAGATCAGGCGCAGAAT+AGG 0.452346 1_2:+52768415 Msa0076600:CDS
CTAGATGGGTCGACGATCGC+AGG 0.455498 1_2:+52766042 Msa0076600:CDS
CTTCGTAAATTATTTGATGG+TGG 0.456739 1_2:+52763973 Msa0076600:CDS
GCAGAGTATAACAGAGGTTG+TGG 0.456855 1_2:+52764077 Msa0076600:CDS
TTCTGAATTCTTGAGGTGGC+AGG 0.456958 1_2:-52766470 None:intergenic
GAGTAGGGACTTTGAGTTCA+GGG 0.457331 1_2:-52763366 None:intergenic
GAGTTTGTTTCCTCCAAGAA+AGG 0.457846 1_2:-52766239 None:intergenic
ATACCTCACTTCCAGTTAAA+GGG 0.459106 1_2:-52765378 None:intergenic
GTTAGGTTCCAATAGCGAAT+TGG 0.463663 1_2:+52763669 Msa0076600:CDS
TCAGGGCGTTTGTAACCGCC+TGG 0.464554 1_2:-52763349 None:intergenic
TATAAAGAAAGCTGCACCTC+TGG 0.469112 1_2:+52764179 Msa0076600:CDS
ACATATGAGTTGCTAAAGAA+AGG 0.469855 1_2:+52766893 Msa0076600:CDS
GGAGGGGTGAAGAAGGGAGT+AGG 0.471511 1_2:-52763183 None:intergenic
CTCTCGTCATTTCTTCCCTA+AGG 0.472450 1_2:+52763294 Msa0076600:CDS
AATGTGATCTCATTCGTTGT+TGG 0.473194 1_2:-52765036 None:intergenic
AATGGAGAGTGCGGCGAAAA+GGG 0.479516 1_2:-52763246 None:intergenic
TTGAGTTGGAGAATGAGAGT+AGG 0.481221 1_2:-52763382 None:intergenic
GAAAGAAGGAAGAGGAGGGA+GGG 0.481474 1_2:-52763087 None:intergenic
TTGGAATTTGTTCTGTTGGC+GGG 0.483032 1_2:+52768039 Msa0076600:CDS
CGAATTTCCCATCTCGGAGG+CGG 0.487689 1_2:+52768265 Msa0076600:CDS
TGGTAGGGAGGGGTGAAGAA+GGG 0.487732 1_2:-52763189 None:intergenic
ATTTCCTGGAATAGGGTTCA+AGG 0.489984 1_2:-52768651 None:intergenic
GAGAAAGATATCTCAAAGAC+GGG 0.490849 1_2:+52765007 Msa0076600:CDS
AGAGGCATTATTGGAAGTGA+TGG 0.491985 1_2:-52763275 None:intergenic
GGGTGAAGAAGGGAGTAGGA+GGG 0.495213 1_2:-52763179 None:intergenic
TCATTCTGTTATTGATGCAA+TGG 0.495631 1_2:+52768549 Msa0076600:three_prime_UTR
TGGCAAACCTTACCAAGATC+AGG 0.496944 1_2:+52768404 Msa0076600:CDS
ATCACACGCCGCCTCCGAGA+TGG 0.500627 1_2:-52768273 None:intergenic
AGAAAGAAGGAAGAGGAGGG+AGG 0.500740 1_2:-52763088 None:intergenic
GATTGGACACAGAAAATACT+TGG 0.500788 1_2:+52766755 Msa0076600:intron
AATCTGTCTGCAATTCCAAC+AGG 0.501062 1_2:-52766096 None:intergenic
CGTAAAGAGATTGTTGAATA+CGG 0.501703 1_2:+52765858 Msa0076600:CDS
CCATGGATATTTGATTTGAA+GGG 0.502541 1_2:-52763123 None:intergenic
TTAGGGACTCTTGGTCAACT+AGG 0.502895 1_2:+52767948 Msa0076600:CDS
TTCTGCGCCTGATCTTGGTA+AGG 0.503435 1_2:-52768411 None:intergenic
CTTAAACTTGAAACACCTGT+TGG 0.505262 1_2:+52766081 Msa0076600:CDS
CTTGGAATTTGTTCTGTTGG+CGG 0.506769 1_2:+52768038 Msa0076600:CDS
GGTGTAAGGGATGGTAGGGA+GGG 0.506777 1_2:-52763200 None:intergenic
CTATTTCGAATTTCCCATCT+CGG 0.507858 1_2:+52768259 Msa0076600:CDS
GAGAATAGAAGATAGAAAGA+AGG 0.509301 1_2:-52763101 None:intergenic
TTACTTGCTTCTGGTGCTAG+TGG 0.511768 1_2:+52763904 Msa0076600:CDS
TTCTTCGTTATTCACAGCAA+TGG 0.512194 1_2:+52765512 Msa0076600:CDS
ATTTGTTAAACTGGAAGATA+GGG 0.520690 1_2:+52764104 Msa0076600:CDS
GAATCTGGTCGGAGTTGAGT+TGG 0.524814 1_2:-52763396 None:intergenic
AAAGCAGTTTCCAAATCGGT+TGG 0.526653 1_2:+52763454 Msa0076600:CDS
GTGTGGATAGCGAGAGAAGG+GGG 0.530632 1_2:-52763221 None:intergenic
AAAATGAGAGCCTTTCTTGG+AGG 0.531067 1_2:+52766229 Msa0076600:CDS
GTAGGAGGGAGGAATAAGAA+GGG 0.531691 1_2:-52763165 None:intergenic
TGGGTCGACGATCGCAGGGA+TGG 0.531906 1_2:+52766047 Msa0076600:CDS
AGGTTCCAATAGCGAATTGG+TGG 0.531924 1_2:+52763672 Msa0076600:CDS
TCACACGCCGCCTCCGAGAT+GGG 0.532753 1_2:-52768272 None:intergenic
TTTCTTATTTATGGTGGTGG+TGG 0.533120 1_2:+52763769 Msa0076600:CDS
TATTGCAGCCAAATCCTGCT+TGG 0.535558 1_2:-52766163 None:intergenic
CAGAGTATAACAGAGGTTGT+GGG 0.536041 1_2:+52764078 Msa0076600:CDS
TTCTTCAAGTTCATTCGCCA+AGG 0.537920 1_2:-52768322 None:intergenic
TGGAAGTGATGGGAGAGGAA+TGG 0.537999 1_2:-52763264 None:intergenic
AGGAGGGAGGGAGATATGGA+TGG 0.538742 1_2:-52763075 None:intergenic
CAACCCAGAACACTCTTCCC+AGG 0.539723 1_2:+52763331 Msa0076600:CDS
GATAGAAAGAAGGAAGAGGA+GGG 0.539929 1_2:-52763091 None:intergenic
AAATTAGTCAATGAGAGTAA+TGG 0.541323 1_2:+52764051 Msa0076600:CDS
GTGTAAGGGATGGTAGGGAG+GGG 0.548181 1_2:-52763199 None:intergenic
AGACTATCGATGTGCCAAGC+AGG 0.548271 1_2:+52766149 Msa0076600:CDS
AGATAGAAAGAAGGAAGAGG+AGG 0.549077 1_2:-52763092 None:intergenic
AACAGTAGGAAGACCTTGAT+CGG 0.550869 1_2:-52763629 None:intergenic
CCAACAAGGGAGAATATACA+AGG 0.551313 1_2:+52766811 Msa0076600:CDS
AGAAGATAGAAAGAAGGAAG+AGG 0.552012 1_2:-52763095 None:intergenic
GTCTTCCTACTGTTGTTGCT+AGG 0.559275 1_2:+52763638 Msa0076600:CDS
TGAAATATCCCAAAGAACTC+AGG 0.564402 1_2:-52768529 None:intergenic
CTAAAGAAAGGGGATCAAGC+TGG 0.564620 1_2:+52766905 Msa0076600:CDS
ATCCACTAAATCACGTGTTG+TGG 0.567456 1_2:+52766367 Msa0076600:CDS
ACTTCTCTAAGAATTGGAGC+TGG 0.567788 1_2:-52765135 None:intergenic
AGGCCATGGCAAATTAAAAG+TGG 0.567870 1_2:-52768579 None:intergenic
TAAGACGCTGTTGTCTCTGA+AGG 0.569012 1_2:-52765300 None:intergenic
CCCTTCAAATCAAATATCCA+TGG 0.570397 1_2:+52763123 Msa0076600:exon
GAGGCGGCGTGTGATAGATA+AGG 0.570406 1_2:+52768281 Msa0076600:CDS
TATGTCATTCTGAATTCTTG+AGG 0.570562 1_2:-52766477 None:intergenic
GCCGTTCTTATTGGTCATAG+TGG 0.574438 1_2:+52764369 Msa0076600:CDS
TCTTGCTTAAAGAGAGGCCA+TGG 0.574910 1_2:-52768593 None:intergenic
GGGAGGGAGATATGGATGGA+TGG 0.575219 1_2:-52763071 None:intergenic
GTGTGATAGATAAGGTGAAA+AGG 0.575343 1_2:+52768289 Msa0076600:CDS
TGAGCAAGAAGTTCGTGAGA+TGG 0.577980 1_2:+52766976 Msa0076600:CDS
ATCTGTACTGCAAACCACAT+TGG 0.578353 1_2:+52768001 Msa0076600:CDS
GAGGAAACAAACTCTATCCA+TGG 0.582861 1_2:+52766248 Msa0076600:CDS
GGTGTGGATAGCGAGAGAAG+GGG 0.584107 1_2:-52763222 None:intergenic
CTCTAAGAATTGGAGCTGGA+AGG 0.584112 1_2:-52765131 None:intergenic
GAGGCATTATTGGAAGTGAT+GGG 0.584359 1_2:-52763274 None:intergenic
AACTACTCAGATTCCACTGA+CGG 0.584647 1_2:+52763040 None:intergenic
ATGACAATTGTTGATACACC+TGG 0.584916 1_2:+52765265 Msa0076600:CDS
GAAAAGGAAAGCAGATACCT+TGG 0.585138 1_2:+52768305 Msa0076600:CDS
GGAGAAAGATATCTCAAAGA+CGG 0.586536 1_2:+52765006 Msa0076600:CDS
GTTAATAGAAATGGAGAGGT+CGG 0.587179 1_2:+52764134 Msa0076600:CDS
TGGCCTCTCTTTAAGCAAGA+AGG 0.588310 1_2:+52768596 Msa0076600:three_prime_UTR
AACTTGAAGAAGCCATGAAG+AGG 0.589676 1_2:+52768334 Msa0076600:CDS
ATCGGAGAGTAAAACGCCAC+TGG 0.590084 1_2:-52763611 None:intergenic
CAGGGCGTTTGTAACCGCCT+GGG 0.594460 1_2:-52763348 None:intergenic
CATGGCAAATTAAAAGTGGA+TGG 0.598743 1_2:-52768575 None:intergenic
GTTGAGTTTCCCGAAACTAG+AGG 0.599289 1_2:-52765941 None:intergenic
GATGGATGACTCTCCGTCAG+TGG 0.599652 1_2:-52763053 None:intergenic
ACTTGAAGAAGCCATGAAGA+GGG 0.600088 1_2:+52768335 Msa0076600:CDS
AACAGTTAATAGAAATGGAG+AGG 0.600267 1_2:+52764130 Msa0076600:CDS
TATTATGGAACAGGGTACCA+TGG 0.605813 1_2:-52763140 None:intergenic
TAGATGGGTCGACGATCGCA+GGG 0.610773 1_2:+52766043 Msa0076600:CDS
TCGCAGGGATGGATAGAATG+AGG 0.611057 1_2:+52766058 Msa0076600:CDS
TGTACAAATCTAGCGACCAA+TGG 0.613025 1_2:-52763700 None:intergenic
GCGCCTTCTTGCTTAAAGAG+AGG 0.614736 1_2:-52768599 None:intergenic
GTGCGGCGAAAAGGGAGGTG+TGG 0.619577 1_2:-52763238 None:intergenic
GTCATTCTGAATTCTTGAGG+TGG 0.619878 1_2:-52766474 None:intergenic
ATATGAGTTGCTAAAGAAAG+GGG 0.621951 1_2:+52766895 Msa0076600:CDS
AGAGCAGATCGAGCAGACAC+AGG 0.622073 1_2:-52765898 None:intergenic
ACCACTATGACCAATAAGAA+CGG 0.622805 1_2:-52764370 None:intergenic
ATTATTGGAAGTGATGGGAG+AGG 0.626448 1_2:-52763269 None:intergenic
CACCATCAAATAATTTACGA+AGG 0.635780 1_2:-52763972 None:intergenic
ACAGCAATGGAAGAAGAAAG+TGG 0.636739 1_2:+52765525 Msa0076600:CDS
CGCTGTGAAAGGTATCCAGA+TGG 0.637277 1_2:+52765093 Msa0076600:CDS
TAGGAGGGAGGAATAAGAAG+GGG 0.642790 1_2:-52763164 None:intergenic
GGAGAGTGCGGCGAAAAGGG+AGG 0.644910 1_2:-52763243 None:intergenic
ACCTGAACAGATGACACAGA+AGG 0.647984 1_2:-52766506 None:intergenic
GCTGCCGCTGCTGTTACCAG+TGG 0.648471 1_2:+52763595 Msa0076600:CDS
GTAAATGCATCCAAATCTGA+AGG 0.648586 1_2:+52763739 Msa0076600:CDS
GTATTCCTAGCAACAACAGT+AGG 0.653665 1_2:-52763643 None:intergenic
GCCACGTGTAAGAATCTGGT+CGG 0.655214 1_2:-52763407 None:intergenic
GAGACAACAGCGTCTTACAG+AGG 0.659308 1_2:+52765306 Msa0076600:CDS
TTTATCGATCAAGTCTAGTG+CGG 0.664777 1_2:-52763434 None:intergenic
ACCAGTAATGAACAAAGTGG+TGG 0.666256 1_2:+52763490 Msa0076600:CDS
AGTATAACAGAGGTTGTGGG+TGG 0.666437 1_2:+52764081 Msa0076600:CDS
GTGTAACTTGATATATGCAA+TGG 0.666867 1_2:+52768703 Msa0076600:three_prime_UTR
TTTCGAATTTCCCATCTCGG+AGG 0.670630 1_2:+52768262 Msa0076600:CDS
AACGCCACTGGTAACAGCAG+CGG 0.672510 1_2:-52763599 None:intergenic
TGCAAATGATGAGAGAACAC+TGG 0.676506 1_2:+52763999 Msa0076600:CDS
TGGGAGAGGAATGGAGAGTG+CGG 0.678631 1_2:-52763255 None:intergenic
TGGTTTGCAGAGTATAACAG+AGG 0.684199 1_2:+52764071 Msa0076600:CDS
AAAAGAAGCAAGTCTGCACG+AGG 0.688131 1_2:-52765337 None:intergenic
TCGCCCTTTAACTGGAAGTG+AGG 0.689500 1_2:+52765375 Msa0076600:CDS
CTAACCAGTAATGAACAAAG+TGG 0.689690 1_2:+52763487 Msa0076600:CDS
AGCAAGAAGATCTTCCAATG+TGG 0.693565 1_2:-52768015 None:intergenic
CATTTATCAGAATAATCATG+AGG 0.697867 1_2:+52765570 Msa0076600:CDS
GAAGGGGTTATTATGGAACA+GGG 0.701207 1_2:-52763148 None:intergenic
CTTAGGGAAGAAATGACGAG+AGG 0.707301 1_2:-52763293 None:intergenic
TCCGACCAGATTCTTACACG+TGG 0.712840 1_2:+52763406 Msa0076600:CDS
TTTGCCAATGACTCTCACAA+AGG 0.714611 1_2:-52768388 None:intergenic
CCCAGAACACTCTTCCCAGG+CGG 0.718534 1_2:+52763334 Msa0076600:CDS
AGAAAGATATCTCAAAGACG+GGG 0.744416 1_2:+52765008 Msa0076600:CDS
GAGAGAACACTGGATGATCG+TGG 0.745507 1_2:+52764009 Msa0076600:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAGTAAACATTATTTTAAA+AGG + chr1_2:52768785-52768804 Msa0076600:three_prime_UTR 10.0%
!!! AAACTTTTAAATCAAGAAAT+TGG + chr1_2:52763802-52763821 Msa0076600:CDS 15.0%
!! AGTTATAATAAATAGTAATG+TGG - chr1_2:52764837-52764856 None:intergenic 15.0%
!! ATTGTACATTAAACAAATAT+TGG + chr1_2:52765707-52765726 Msa0076600:intron 15.0%
!! TTGTACATTAAACAAATATT+GGG + chr1_2:52765708-52765727 Msa0076600:intron 15.0%
!!! AGTTTTTACATTATTTTACA+AGG - chr1_2:52767015-52767034 None:intergenic 15.0%
!!! TTATATGCTATTTTACTTAT+GGG - chr1_2:52767375-52767394 None:intergenic 15.0%
!!! TTTATATGCTATTTTACTTA+TGG - chr1_2:52767376-52767395 None:intergenic 15.0%
!! CATACTAGTAAAATATATTT+CGG + chr1_2:52768122-52768141 Msa0076600:intron 15.0%
!! ATAGTAATGAAATAATATCT+AGG + chr1_2:52768164-52768183 Msa0076600:intron 15.0%
!!! TAAAAGGTTAATTAAGTTTT+TGG + chr1_2:52768801-52768820 Msa0076600:three_prime_UTR 15.0%
!! GTTAAAACTAGTTAACAAAT+AGG + chr1_2:52764487-52764506 Msa0076600:intron 20.0%
!! TTCCTATATTGTTATACTTA+TGG + chr1_2:52764720-52764739 Msa0076600:intron 20.0%
!! TTCCATAAGTATAACAATAT+AGG - chr1_2:52764725-52764744 None:intergenic 20.0%
!!! TTAGTCCTTTTTTTTTAGTA+TGG + chr1_2:52765403-52765422 Msa0076600:intron 20.0%
!!! TAGTCCTTTTTTTTTAGTAT+GGG + chr1_2:52765404-52765423 Msa0076600:intron 20.0%
!! TTATGTTTCATGATTCATAT+TGG + chr1_2:52765598-52765617 Msa0076600:intron 20.0%
!! TATGTTTCATGATTCATATT+GGG + chr1_2:52765599-52765618 Msa0076600:intron 20.0%
!! ATTTGTTTAATGTACAATAG+AGG - chr1_2:52765705-52765724 None:intergenic 20.0%
!! ATATATAACATAAGACTACT+TGG - chr1_2:52765790-52765809 None:intergenic 20.0%
!!! TTTTTATATAGCTTTCTAGA+TGG + chr1_2:52766027-52766046 Msa0076600:CDS 20.0%
!!! TTTTATATAGCTTTCTAGAT+GGG + chr1_2:52766028-52766047 Msa0076600:CDS 20.0%
!!! AAATGATTTTGCATTGAATA+TGG + chr1_2:52766206-52766225 Msa0076600:CDS 20.0%
!! TTAAGAACATACTAATTAAG+AGG - chr1_2:52766319-52766338 None:intergenic 20.0%
!!! ATGTTTTGCTTAAATGTTTT+TGG + chr1_2:52766730-52766749 Msa0076600:intron 20.0%
!!! GTTTTATATAAGTTTGGTTT+CGG - chr1_2:52767285-52767304 None:intergenic 20.0%
!! GACAATATTCATTCATATAT+GGG - chr1_2:52767783-52767802 None:intergenic 20.0%
!! AGACAATATTCATTCATATA+TGG - chr1_2:52767784-52767803 None:intergenic 20.0%
!! ATTTCATTACTATCTCTTAA+AGG - chr1_2:52768157-52768176 None:intergenic 20.0%
!! TTATATGATTAATGATTTCC+TGG - chr1_2:52768668-52768687 None:intergenic 20.0%
!!! TTACTAGTTTGGAAAGTTTT+GGG + chr1_2:52763932-52763951 Msa0076600:CDS 25.0%
! TTCCTTCGTAAATTATTTGA+TGG + chr1_2:52763970-52763989 Msa0076600:CDS 25.0%
!! TTCGTAAATTATTTGATGGT+GGG + chr1_2:52763974-52763993 Msa0076600:CDS 25.0%
! AAATTAGTCAATGAGAGTAA+TGG + chr1_2:52764051-52764070 Msa0076600:CDS 25.0%
!! ATTTGTTAAACTGGAAGATA+GGG + chr1_2:52764104-52764123 Msa0076600:CDS 25.0%
!!! GATCTTTTAACTAAAACAGT+TGG + chr1_2:52764203-52764222 Msa0076600:intron 25.0%
! ACACAAAGTAAACAATATAC+TGG - chr1_2:52764275-52764294 None:intergenic 25.0%
! TTGTTTACTTTGTGTTGAAT+TGG + chr1_2:52764280-52764299 Msa0076600:intron 25.0%
! AACTACTTTGAACAATATGT+TGG + chr1_2:52764677-52764696 Msa0076600:intron 25.0%
! ACTACTTTGAACAATATGTT+GGG + chr1_2:52764678-52764697 Msa0076600:intron 25.0%
! ATTTATTTGACTCTATTGTC+AGG + chr1_2:52764939-52764958 Msa0076600:intron 25.0%
! TTTATTTGACTCTATTGTCA+GGG + chr1_2:52764940-52764959 Msa0076600:intron 25.0%
!!! TTAGTTTTCTCCTTATGTTT+TGG + chr1_2:52765172-52765191 Msa0076600:intron 25.0%
! CAAACAGAAATTGTAATCAA+GGG - chr1_2:52765202-52765221 None:intergenic 25.0%
!!! AGTCCTTTTTTTTTAGTATG+GGG + chr1_2:52765405-52765424 Msa0076600:intron 25.0%
!!! GTTGTTTTATGTTCTTTTTC+AGG + chr1_2:52765483-52765502 Msa0076600:intron 25.0%
! CATTTATCAGAATAATCATG+AGG + chr1_2:52765570-52765589 Msa0076600:CDS 25.0%
!! GTTCATAATTTTTGAATGTC+AGG + chr1_2:52766281-52766300 Msa0076600:intron 25.0%
! AGTATGTTCTTAAATTGCAA+TGG + chr1_2:52766326-52766345 Msa0076600:intron 25.0%
!! GTTGTATCATATGTTTTCAA+AGG + chr1_2:52766431-52766450 Msa0076600:CDS 25.0%
! AAAATAGTAAACATGACTAC+AGG - chr1_2:52766573-52766592 None:intergenic 25.0%
! TTTAATCTCGCATTAGTATT+TGG - chr1_2:52766676-52766695 None:intergenic 25.0%
! ACATTTAAGCAAAACATGAA+TGG - chr1_2:52766727-52766746 None:intergenic 25.0%
!!! CTTAAATGTTTTTGGTTGAT+TGG + chr1_2:52766738-52766757 Msa0076600:intron 25.0%
!! ACTATTTTCATGAATCAATG+AGG - chr1_2:52766858-52766877 None:intergenic 25.0%
!! TTCTCATGATTTGAAATCAA+AGG + chr1_2:52767119-52767138 Msa0076600:intron 25.0%
! AACCAAACTTATATAAAACC+AGG + chr1_2:52767286-52767305 Msa0076600:intron 25.0%
! ACCAAACTTATATAAAACCA+GGG + chr1_2:52767287-52767306 Msa0076600:intron 25.0%
! TATATGTGTAACAAACTTTC+CGG + chr1_2:52767312-52767331 Msa0076600:intron 25.0%
!! AAACTTCCATTTAAAATGTC+CGG - chr1_2:52767334-52767353 None:intergenic 25.0%
!! ATTGATCATTCATCATTTTG+AGG - chr1_2:52767508-52767527 None:intergenic 25.0%
! ATGATGAATGATCAATCAAT+AGG + chr1_2:52767512-52767531 Msa0076600:intron 25.0%
!! ATAGGTTTGTTTAAAAGTTG+AGG + chr1_2:52767530-52767549 Msa0076600:intron 25.0%
! AAATATTATATTTACCGCTG+AGG - chr1_2:52767814-52767833 None:intergenic 25.0%
!! TGCATTTTCAAATACAACTT+GGG - chr1_2:52768100-52768119 None:intergenic 25.0%
!! ATGCATTTTCAAATACAACT+TGG - chr1_2:52768101-52768120 None:intergenic 25.0%
! ATTAATGATTTCCTGGAATA+GGG - chr1_2:52768661-52768680 None:intergenic 25.0%
GAGAATAGAAGATAGAAAGA+AGG - chr1_2:52763104-52763123 None:intergenic 30.0%
!! CCATGGATATTTGATTTGAA+GGG - chr1_2:52763126-52763145 None:intergenic 30.0%
!! ACCATGGATATTTGATTTGA+AGG - chr1_2:52763127-52763146 None:intergenic 30.0%
!!! GGTGCTGATTTTCTTATTTA+TGG + chr1_2:52763760-52763779 Msa0076600:CDS 30.0%
!! GCTGATTTTCTTATTTATGG+TGG + chr1_2:52763763-52763782 Msa0076600:CDS 30.0%
!! GATTTTCTTATTTATGGTGG+TGG + chr1_2:52763766-52763785 Msa0076600:CDS 30.0%
!!! TAGTGGTTTTGTTACTAGTT+TGG + chr1_2:52763921-52763940 Msa0076600:CDS 30.0%
!! GTTACTAGTTTGGAAAGTTT+TGG + chr1_2:52763931-52763950 Msa0076600:CDS 30.0%
CACCATCAAATAATTTACGA+AGG - chr1_2:52763975-52763994 None:intergenic 30.0%
CTTCGTAAATTATTTGATGG+TGG + chr1_2:52763973-52763992 Msa0076600:CDS 30.0%
!! GATTTGTTAAACTGGAAGAT+AGG + chr1_2:52764103-52764122 Msa0076600:CDS 30.0%
GGAGAAACAGTTAATAGAAA+TGG + chr1_2:52764125-52764144 Msa0076600:CDS 30.0%
AACAGTTAATAGAAATGGAG+AGG + chr1_2:52764130-52764149 Msa0076600:CDS 30.0%
TTTAGTTAAAAGATCACCAG+AGG - chr1_2:52764198-52764217 None:intergenic 30.0%
ACTTTGTGTTGAATTGGAAT+TGG + chr1_2:52764286-52764305 Msa0076600:intron 30.0%
! AATTGGTTTCAAATGACAGA+TGG + chr1_2:52764303-52764322 Msa0076600:intron 30.0%
!! TTTACTAGAGTGTTGATTCA+TGG + chr1_2:52764589-52764608 Msa0076600:intron 30.0%
!! AACAATATGTTGGGTTAGTT+GGG + chr1_2:52764687-52764706 Msa0076600:intron 30.0%
TTATTTGACTCTATTGTCAG+GGG + chr1_2:52764941-52764960 Msa0076600:intron 30.0%
!!! AGCGTTGTTTTTCAATATCT+AGG - chr1_2:52765077-52765096 None:intergenic 30.0%
TAGCAAATATATTGACCATC+TGG - chr1_2:52765111-52765130 None:intergenic 30.0%
! TGACTTACTTCTCTAAGAAT+TGG - chr1_2:52765144-52765163 None:intergenic 30.0%
GCAAACAGAAATTGTAATCA+AGG - chr1_2:52765203-52765222 None:intergenic 30.0%
! AATTGTCATCTGTTTTCAGA+AGG - chr1_2:52765254-52765273 None:intergenic 30.0%
ATGCCCCATACTAAAAAAAA+AGG - chr1_2:52765411-52765430 None:intergenic 30.0%
AGCTAAAGACAATAACATTG+GGG - chr1_2:52765740-52765759 None:intergenic 30.0%
CAGCTAAAGACAATAACATT+GGG - chr1_2:52765741-52765760 None:intergenic 30.0%
ACAGCTAAAGACAATAACAT+TGG - chr1_2:52765742-52765761 None:intergenic 30.0%
!! CTGTTCTTTTGTACTGATAT+AGG + chr1_2:52765758-52765777 Msa0076600:intron 30.0%
CGTAAAGAGATTGTTGAATA+CGG + chr1_2:52765858-52765877 Msa0076600:CDS 30.0%
TATGAACTTGTAACATACCA+TGG - chr1_2:52766268-52766287 None:intergenic 30.0%
TATGTCATTCTGAATTCTTG+AGG - chr1_2:52766480-52766499 None:intergenic 30.0%
TGATTTATTCAACCATAAGC+TGG + chr1_2:52766608-52766627 Msa0076600:intron 30.0%
TACTTGGAGATTATGCAAAT+TGG + chr1_2:52766771-52766790 Msa0076600:CDS 30.0%
ACATATGAGTTGCTAAAGAA+AGG + chr1_2:52766893-52766912 Msa0076600:CDS 30.0%
CATATGAGTTGCTAAAGAAA+GGG + chr1_2:52766894-52766913 Msa0076600:CDS 30.0%
ATATGAGTTGCTAAAGAAAG+GGG + chr1_2:52766895-52766914 Msa0076600:CDS 30.0%
ATGTAAAAACTCTTCTCTTC+TGG + chr1_2:52767024-52767043 Msa0076600:intron 30.0%
TGTAAAAACTCTTCTCTTCT+GGG + chr1_2:52767025-52767044 Msa0076600:intron 30.0%
TCAGTTGAACAACTAACTAA+TGG + chr1_2:52767194-52767213 Msa0076600:intron 30.0%
TGAACAACTAACTAATGGAA+TGG + chr1_2:52767199-52767218 Msa0076600:intron 30.0%
!!! ACCCTGGTTTTATATAAGTT+TGG - chr1_2:52767291-52767310 None:intergenic 30.0%
! AACTTTCCGGACATTTTAAA+TGG + chr1_2:52767325-52767344 Msa0076600:intron 30.0%
! ATGTCTAAGATATTGCCTTA+AGG + chr1_2:52767427-52767446 Msa0076600:intron 30.0%
TTAGCATTCAGAATGATTTC+TGG + chr1_2:52767450-52767469 Msa0076600:intron 30.0%
ATAACCAGTGTGATTTATTC+AGG + chr1_2:52767564-52767583 Msa0076600:intron 30.0%
ACTTAATTGTTGATCAGACA+AGG - chr1_2:52767712-52767731 None:intergenic 30.0%
AGTCTAACAAAGACTAAACA+GGG - chr1_2:52767754-52767773 None:intergenic 30.0%
AAGTCTAACAAAGACTAAAC+AGG - chr1_2:52767755-52767774 None:intergenic 30.0%
TCAAAATTGTTTAGTGACAG+TGG - chr1_2:52767900-52767919 None:intergenic 30.0%
! TTCCTTCTGTGTAGATTTTA+GGG + chr1_2:52767931-52767950 Msa0076600:intron 30.0%
! GCATTTTCAAATACAACTTG+GGG - chr1_2:52768099-52768118 None:intergenic 30.0%
!!! AGTCGATATTTGTTTTACTC+AGG + chr1_2:52768229-52768248 Msa0076600:intron 30.0%
TCATTCTGTTATTGATGCAA+TGG + chr1_2:52768549-52768568 Msa0076600:three_prime_UTR 30.0%
GATTAATGATTTCCTGGAAT+AGG - chr1_2:52768662-52768681 None:intergenic 30.0%
GTGTAACTTGATATATGCAA+TGG + chr1_2:52768703-52768722 Msa0076600:three_prime_UTR 30.0%
AGAAGATAGAAAGAAGGAAG+AGG - chr1_2:52763098-52763117 None:intergenic 35.0%
CCCTTCAAATCAAATATCCA+TGG + chr1_2:52763123-52763142 Msa0076600:exon 35.0%
GGAATAAGAAGGGGTTATTA+TGG - chr1_2:52763158-52763177 None:intergenic 35.0%
TTTATCGATCAAGTCTAGTG+CGG - chr1_2:52763437-52763456 None:intergenic 35.0%
CGATAAAGCAGTTTCCAAAT+CGG + chr1_2:52763450-52763469 Msa0076600:CDS 35.0%
AATCACAATTCCAACCGATT+TGG - chr1_2:52763467-52763486 None:intergenic 35.0%
CTAACCAGTAATGAACAAAG+TGG + chr1_2:52763487-52763506 Msa0076600:CDS 35.0%
GTTGCTAGGAATACAATGTT+AGG + chr1_2:52763652-52763671 Msa0076600:CDS 35.0%
GTAAATGCATCCAAATCTGA+AGG + chr1_2:52763739-52763758 Msa0076600:CDS 35.0%
AAAATCAGCACCTTCAGATT+TGG - chr1_2:52763752-52763771 None:intergenic 35.0%
!! TTTCTTATTTATGGTGGTGG+TGG + chr1_2:52763769-52763788 Msa0076600:CDS 35.0%
GAAAAACTTGTCATACGATG+AGG + chr1_2:52763873-52763892 Msa0076600:CDS 35.0%
GTTAATAGAAATGGAGAGGT+CGG + chr1_2:52764134-52764153 Msa0076600:CDS 35.0%
ACCACTATGACCAATAAGAA+CGG - chr1_2:52764373-52764392 None:intergenic 35.0%
TGCTGAATCTCAACAAATTC+TGG + chr1_2:52764400-52764419 Msa0076600:intron 35.0%
CTAATACCAATGTATATCCC+AGG - chr1_2:52764428-52764447 None:intergenic 35.0%
CAAATAGGTGCTCTTTATTG+TGG + chr1_2:52764502-52764521 Msa0076600:intron 35.0%
GTATACTTACAGTGAGTAGT+TGG + chr1_2:52764611-52764630 Msa0076600:intron 35.0%
!! GAACAATATGTTGGGTTAGT+TGG + chr1_2:52764686-52764705 Msa0076600:intron 35.0%
! ATGAGTATTGTCAGCTATTG+CGG - chr1_2:52764759-52764778 None:intergenic 35.0%
TAGCTGACAATACTCATCAT+AGG + chr1_2:52764762-52764781 Msa0076600:intron 35.0%
AACTTTCCATCTTTCACCTT+AGG + chr1_2:52764785-52764804 Msa0076600:intron 35.0%
TCAGATAACTACTCAACCTA+AGG - chr1_2:52764804-52764823 None:intergenic 35.0%
TTTCTGTCTCACAAAGCAAT+TGG + chr1_2:52764857-52764876 Msa0076600:intron 35.0%
TATTTGACTCTATTGTCAGG+GGG + chr1_2:52764942-52764961 Msa0076600:intron 35.0%
GGAGAAAGATATCTCAAAGA+CGG + chr1_2:52765006-52765025 Msa0076600:CDS 35.0%
GAGAAAGATATCTCAAAGAC+GGG + chr1_2:52765007-52765026 Msa0076600:CDS 35.0%
AGAAAGATATCTCAAAGACG+GGG + chr1_2:52765008-52765027 Msa0076600:CDS 35.0%
AATGTGATCTCATTCGTTGT+TGG - chr1_2:52765039-52765058 None:intergenic 35.0%
TTGAAAAACAACGCTGTGAA+AGG + chr1_2:52765082-52765101 Msa0076600:CDS 35.0%
CAATTTCTGTTTGCAATTCG+TGG + chr1_2:52765209-52765228 Msa0076600:intron 35.0%
ATGACAATTGTTGATACACC+TGG + chr1_2:52765265-52765284 Msa0076600:CDS 35.0%
TGAAGGATTACATTAGTTCC+AGG - chr1_2:52765286-52765305 None:intergenic 35.0%
ATACCTCACTTCCAGTTAAA+GGG - chr1_2:52765381-52765400 None:intergenic 35.0%
TTCTTCGTTATTCACAGCAA+TGG + chr1_2:52765512-52765531 Msa0076600:CDS 35.0%
TAGATCAATCCTAGAAGCTT+CGG - chr1_2:52765630-52765649 None:intergenic 35.0%
GCTAAAGACAATAACATTGG+GGG - chr1_2:52765739-52765758 None:intergenic 35.0%
CTTTACGTTGTCCTTAATGA+AGG - chr1_2:52765845-52765864 None:intergenic 35.0%
TGCTCTTGAAGCAAAACTTA+TGG + chr1_2:52765915-52765934 Msa0076600:CDS 35.0%
TCAAGCTCGTAAAAGCTATT+GGG - chr1_2:52766003-52766022 None:intergenic 35.0%
CTTAAACTTGAAACACCTGT+TGG + chr1_2:52766081-52766100 Msa0076600:CDS 35.0%
!!! CATCTGTTCAGGTTAGTTTT+TGG + chr1_2:52766516-52766535 Msa0076600:intron 35.0%
GATTGGACACAGAAAATACT+TGG + chr1_2:52766755-52766774 Msa0076600:intron 35.0%
CTTGTATATTCTCCCTTGTT+GGG - chr1_2:52766813-52766832 None:intergenic 35.0%
ACGAACTAAAAGAGAACTTG+AGG - chr1_2:52767051-52767070 None:intergenic 35.0%
CTGCAATTGAACTAAAGAGA+TGG - chr1_2:52767093-52767112 None:intergenic 35.0%
! CTGTGCCATTGATATCAATA+AGG + chr1_2:52767161-52767180 Msa0076600:intron 35.0%
!! CTTGGCCTTATTGATATCAA+TGG - chr1_2:52767169-52767188 None:intergenic 35.0%
TTTGTTACACATATAGACCC+TGG - chr1_2:52767307-52767326 None:intergenic 35.0%
CATTCTGAATGCTAACCTTA+AGG - chr1_2:52767445-52767464 None:intergenic 35.0%
! TTTGTATTGCCACTTATCGT+TGG + chr1_2:52767617-52767636 Msa0076600:intron 35.0%
! TTCCCTATAGTAACGTTTTC+TGG + chr1_2:52767649-52767668 Msa0076600:intron 35.0%
TGCCAGAAAACGTTACTATA+GGG - chr1_2:52767654-52767673 None:intergenic 35.0%
! CTTGTTATATAGTAGCTTCC+AGG - chr1_2:52767679-52767698 None:intergenic 35.0%
AAATTGTTTAGTGACAGTGG+TGG - chr1_2:52767897-52767916 None:intergenic 35.0%
! CTTCCTTCTGTGTAGATTTT+AGG + chr1_2:52767930-52767949 Msa0076600:intron 35.0%
! CTAGGCAATGTTGTTTGAAA+TGG + chr1_2:52768182-52768201 Msa0076600:intron 35.0%
CTATTTCGAATTTCCCATCT+CGG + chr1_2:52768259-52768278 Msa0076600:CDS 35.0%
GTGTGATAGATAAGGTGAAA+AGG + chr1_2:52768289-52768308 Msa0076600:CDS 35.0%
GACTGAAGCAGTAGAAAATT+TGG + chr1_2:52768362-52768381 Msa0076600:CDS 35.0%
TGAAATATCCCAAAGAACTC+AGG - chr1_2:52768532-52768551 None:intergenic 35.0%
CATGGCAAATTAAAAGTGGA+TGG - chr1_2:52768578-52768597 None:intergenic 35.0%
!!! CATCCACTTTTAATTTGCCA+TGG + chr1_2:52768576-52768595 Msa0076600:three_prime_UTR 35.0%
!!! AGGCGCTATTTTTGAATCAA+TGG + chr1_2:52768616-52768635 Msa0076600:three_prime_UTR 35.0%
GATAGAAAGAAGGAAGAGGA+GGG - chr1_2:52763094-52763113 None:intergenic 40.0%
AGATAGAAAGAAGGAAGAGG+AGG - chr1_2:52763095-52763114 None:intergenic 40.0%
! TATTATGGAACAGGGTACCA+TGG - chr1_2:52763143-52763162 None:intergenic 40.0%
GAAGGGGTTATTATGGAACA+GGG - chr1_2:52763151-52763170 None:intergenic 40.0%
AGAAGGGGTTATTATGGAAC+AGG - chr1_2:52763152-52763171 None:intergenic 40.0%
! ATTATTGGAAGTGATGGGAG+AGG - chr1_2:52763272-52763291 None:intergenic 40.0%
! GAGGCATTATTGGAAGTGAT+GGG - chr1_2:52763277-52763296 None:intergenic 40.0%
!! AGAGGCATTATTGGAAGTGA+TGG - chr1_2:52763278-52763297 None:intergenic 40.0%
!! GAAATGACGAGAGGCATTAT+TGG - chr1_2:52763287-52763306 None:intergenic 40.0%
! TGAGTTGGAGAATGAGAGTA+GGG - chr1_2:52763384-52763403 None:intergenic 40.0%
!! TTGAGTTGGAGAATGAGAGT+AGG - chr1_2:52763385-52763404 None:intergenic 40.0%
AAAGCAGTTTCCAAATCGGT+TGG + chr1_2:52763454-52763473 Msa0076600:CDS 40.0%
ACCAGTAATGAACAAAGTGG+TGG + chr1_2:52763490-52763509 Msa0076600:CDS 40.0%
ACCACCACTTTGTTCATTAC+TGG - chr1_2:52763494-52763513 None:intergenic 40.0%
AACAGTAGGAAGACCTTGAT+CGG - chr1_2:52763632-52763651 None:intergenic 40.0%
GTATTCCTAGCAACAACAGT+AGG - chr1_2:52763646-52763665 None:intergenic 40.0%
GTTAGGTTCCAATAGCGAAT+TGG + chr1_2:52763669-52763688 Msa0076600:CDS 40.0%
AAGAACCACCAATTCGCTAT+TGG - chr1_2:52763680-52763699 None:intergenic 40.0%
TGTACAAATCTAGCGACCAA+TGG - chr1_2:52763703-52763722 None:intergenic 40.0%
!! ACCGATTTTTGCCTCTTTTG+TGG + chr1_2:52763849-52763868 Msa0076600:CDS 40.0%
CCCACAAAAGAGGCAAAAAT+CGG - chr1_2:52763853-52763872 None:intergenic 40.0%
! CCGATTTTTGCCTCTTTTGT+GGG + chr1_2:52763850-52763869 Msa0076600:CDS 40.0%
! CGATTTTTGCCTCTTTTGTG+GGG + chr1_2:52763851-52763870 Msa0076600:CDS 40.0%
! CAAGTTTTTCCCCACAAAAG+AGG - chr1_2:52763863-52763882 None:intergenic 40.0%
TGCAAATGATGAGAGAACAC+TGG + chr1_2:52763999-52764018 Msa0076600:CDS 40.0%
! TGGTTTGCAGAGTATAACAG+AGG + chr1_2:52764071-52764090 Msa0076600:CDS 40.0%
CAGAGTATAACAGAGGTTGT+GGG + chr1_2:52764078-52764097 Msa0076600:CDS 40.0%
!! TGTGGGTGGATTTGTTAAAC+TGG + chr1_2:52764095-52764114 Msa0076600:CDS 40.0%
TATAAAGAAAGCTGCACCTC+TGG + chr1_2:52764179-52764198 Msa0076600:CDS 40.0%
TGGTTTCAAATGACAGATGG+AGG + chr1_2:52764306-52764325 Msa0076600:intron 40.0%
!! TCTCAACAAATTCTGGTTCC+TGG + chr1_2:52764407-52764426 Msa0076600:intron 40.0%
!! CTCAACAAATTCTGGTTCCT+GGG + chr1_2:52764408-52764427 Msa0076600:intron 40.0%
ACTCAACCTAAGGTGAAAGA+TGG - chr1_2:52764794-52764813 None:intergenic 40.0%
TGGTGAGATGCAAATACAAC+TGG + chr1_2:52764877-52764896 Msa0076600:intron 40.0%
ACTGTGATTAATGCGCTTCT+TGG + chr1_2:52764985-52765004 Msa0076600:CDS 40.0%
! ACTTCTCTAAGAATTGGAGC+TGG - chr1_2:52765138-52765157 None:intergenic 40.0%
CAAGGGAGAACCAAAACATA+AGG - chr1_2:52765185-52765204 None:intergenic 40.0%
AAGGATGAAGAAAACTGCTG+AGG - chr1_2:52765235-52765254 None:intergenic 40.0%
CATACCTCACTTCCAGTTAA+AGG - chr1_2:52765382-52765401 None:intergenic 40.0%
CTTTAACTGGAAGTGAGGTA+TGG + chr1_2:52765380-52765399 Msa0076600:intron 40.0%
AAACAACATGTCATACCCCT+GGG - chr1_2:52765470-52765489 None:intergenic 40.0%
AAAACAACATGTCATACCCC+TGG - chr1_2:52765471-52765490 None:intergenic 40.0%
ACAGCAATGGAAGAAGAAAG+TGG + chr1_2:52765525-52765544 Msa0076600:CDS 40.0%
!! AGCTTCTAGGATTGATCTAG+TGG + chr1_2:52765631-52765650 Msa0076600:intron 40.0%
TAGGATTGATCTAGTGGTGA+GGG + chr1_2:52765637-52765656 Msa0076600:intron 40.0%
TCACAATTCAATGCAGCTTG+AGG + chr1_2:52765810-52765829 Msa0076600:intron 40.0%
GGAAGCAATGTCCTTCATTA+AGG + chr1_2:52765831-52765850 Msa0076600:CDS 40.0%
! CTTATGGCTACCTCTAGTTT+CGG + chr1_2:52765931-52765950 Msa0076600:CDS 40.0%
! TTATGGCTACCTCTAGTTTC+GGG + chr1_2:52765932-52765951 Msa0076600:CDS 40.0%
GAAGAATTGTTGTCAGTCTC+TGG + chr1_2:52765964-52765983 Msa0076600:CDS 40.0%
!! TCAGTCTCTGGTTCTCAATA+TGG + chr1_2:52765976-52765995 Msa0076600:CDS 40.0%
CTCAAGCTCGTAAAAGCTAT+TGG - chr1_2:52766004-52766023 None:intergenic 40.0%
AATCTGTCTGCAATTCCAAC+AGG - chr1_2:52766099-52766118 None:intergenic 40.0%
TGGAAAATGAGAGCCTTTCT+TGG + chr1_2:52766226-52766245 Msa0076600:CDS 40.0%
AAAATGAGAGCCTTTCTTGG+AGG + chr1_2:52766229-52766248 Msa0076600:CDS 40.0%
! GAGTTTGTTTCCTCCAAGAA+AGG - chr1_2:52766242-52766261 None:intergenic 40.0%
GAGGAAACAAACTCTATCCA+TGG + chr1_2:52766248-52766267 Msa0076600:CDS 40.0%
ATCCACTAAATCACGTGTTG+TGG + chr1_2:52766367-52766386 Msa0076600:CDS 40.0%
GTCATTCTGAATTCTTGAGG+TGG - chr1_2:52766477-52766496 None:intergenic 40.0%
AAAAAGTGGAGTCCAGCTTA+TGG - chr1_2:52766623-52766642 None:intergenic 40.0%
TTGGATGTACTAGCCATCTT+GGG - chr1_2:52766657-52766676 None:intergenic 40.0%
TTTGGATGTACTAGCCATCT+TGG - chr1_2:52766658-52766677 None:intergenic 40.0%
! TCTCCCTTGTTGGGTATTTT+TGG - chr1_2:52766804-52766823 None:intergenic 40.0%
CCTTGTATATTCTCCCTTGT+TGG - chr1_2:52766814-52766833 None:intergenic 40.0%
CCAACAAGGGAGAATATACA+AGG + chr1_2:52766811-52766830 Msa0076600:CDS 40.0%
!! AGGAATCTTTTGAGAAGCGA+TGG + chr1_2:52766831-52766850 Msa0076600:CDS 40.0%
GTTGTTCAACTGAAGTGACT+TGG - chr1_2:52767187-52767206 None:intergenic 40.0%
GCAACCTGAATAAATCACAC+TGG - chr1_2:52767571-52767590 None:intergenic 40.0%
GTGCCAGAAAACGTTACTAT+AGG - chr1_2:52767655-52767674 None:intergenic 40.0%
GTCCCTAAAATCTACACAGA+AGG - chr1_2:52767936-52767955 None:intergenic 40.0%
!! GTGTAGATTTTAGGGACTCT+TGG + chr1_2:52767939-52767958 Msa0076600:intron 40.0%
ATCTGTACTGCAAACCACAT+TGG + chr1_2:52768001-52768020 Msa0076600:CDS 40.0%
AGCAAGAAGATCTTCCAATG+TGG - chr1_2:52768018-52768037 None:intergenic 40.0%
TTGGAAGATCTTCTTGCTCT+TGG + chr1_2:52768020-52768039 Msa0076600:CDS 40.0%
GAAAAGGAAAGCAGATACCT+TGG + chr1_2:52768305-52768324 Msa0076600:CDS 40.0%
! TTCTTCAAGTTCATTCGCCA+AGG - chr1_2:52768325-52768344 None:intergenic 40.0%
AACTTGAAGAAGCCATGAAG+AGG + chr1_2:52768334-52768353 Msa0076600:CDS 40.0%
ACTTGAAGAAGCCATGAAGA+GGG + chr1_2:52768335-52768354 Msa0076600:CDS 40.0%
TTCAGTCAAATCCCTCTTCA+TGG - chr1_2:52768349-52768368 None:intergenic 40.0%
GATACCTTTGTGAGAGTCAT+TGG + chr1_2:52768384-52768403 Msa0076600:CDS 40.0%
TTTGCCAATGACTCTCACAA+AGG - chr1_2:52768391-52768410 None:intergenic 40.0%
! CTCAGGACACATGAAGATTT+TGG - chr1_2:52768515-52768534 None:intergenic 40.0%
TTCATGTGTCCTGAGTTCTT+TGG + chr1_2:52768520-52768539 Msa0076600:exon 40.0%
TCATGTGTCCTGAGTTCTTT+GGG + chr1_2:52768521-52768540 Msa0076600:exon 40.0%
AGGCCATGGCAAATTAAAAG+TGG - chr1_2:52768582-52768601 None:intergenic 40.0%
ATTTCCTGGAATAGGGTTCA+AGG - chr1_2:52768654-52768673 None:intergenic 40.0%
TAGGAGGGAGGAATAAGAAG+GGG - chr1_2:52763167-52763186 None:intergenic 45.0%
GTAGGAGGGAGGAATAAGAA+GGG - chr1_2:52763168-52763187 None:intergenic 45.0%
AGTAGGAGGGAGGAATAAGA+AGG - chr1_2:52763169-52763188 None:intergenic 45.0%
CTTAGGGAAGAAATGACGAG+AGG - chr1_2:52763296-52763315 None:intergenic 45.0%
CTCTCGTCATTTCTTCCCTA+AGG + chr1_2:52763294-52763313 Msa0076600:CDS 45.0%
! GAGTAGGGACTTTGAGTTCA+GGG - chr1_2:52763369-52763388 None:intergenic 45.0%
! AGAGTAGGGACTTTGAGTTC+AGG - chr1_2:52763370-52763389 None:intergenic 45.0%
ATTCGCCACGTGTAAGAATC+TGG - chr1_2:52763414-52763433 None:intergenic 45.0%
GTCTTCCTACTGTTGTTGCT+AGG + chr1_2:52763638-52763657 Msa0076600:CDS 45.0%
AGGTTCCAATAGCGAATTGG+TGG + chr1_2:52763672-52763691 Msa0076600:CDS 45.0%
! CGAATTGGTGGTTCTTCCAT+TGG + chr1_2:52763684-52763703 Msa0076600:CDS 45.0%
!! CTTATTTATGGTGGTGGTGG+CGG + chr1_2:52763772-52763791 Msa0076600:CDS 45.0%
! GCTTCGAGTTTACTTGCTTC+TGG + chr1_2:52763895-52763914 Msa0076600:CDS 45.0%
! TTACTTGCTTCTGGTGCTAG+TGG + chr1_2:52763904-52763923 Msa0076600:CDS 45.0%
GCAGAGTATAACAGAGGTTG+TGG + chr1_2:52764077-52764096 Msa0076600:CDS 45.0%
AGTATAACAGAGGTTGTGGG+TGG + chr1_2:52764081-52764100 Msa0076600:CDS 45.0%
GATTGACGAGCCGTTCTTAT+TGG + chr1_2:52764360-52764379 Msa0076600:CDS 45.0%
GCCGTTCTTATTGGTCATAG+TGG + chr1_2:52764369-52764388 Msa0076600:CDS 45.0%
CTGGTTCCTGGGATATACAT+TGG + chr1_2:52764419-52764438 Msa0076600:intron 45.0%
! CTCTAAGAATTGGAGCTGGA+AGG - chr1_2:52765134-52765153 None:intergenic 45.0%
TAAGACGCTGTTGTCTCTGA+AGG - chr1_2:52765303-52765322 None:intergenic 45.0%
AAAAGAAGCAAGTCTGCACG+AGG - chr1_2:52765340-52765359 None:intergenic 45.0%
TATAGTGTACTTACCCACCC+AGG + chr1_2:52765450-52765469 Msa0076600:intron 45.0%
ATAGTGTACTTACCCACCCA+GGG + chr1_2:52765451-52765470 Msa0076600:intron 45.0%
CTAGGATTGATCTAGTGGTG+AGG + chr1_2:52765636-52765655 Msa0076600:intron 45.0%
TGATCTAGTGGTGAGGGATT+TGG + chr1_2:52765643-52765662 Msa0076600:intron 45.0%
GATCTAGTGGTGAGGGATTT+GGG + chr1_2:52765644-52765663 Msa0076600:intron 45.0%
GGATTTGGGTAGTATGCATG+AGG + chr1_2:52765658-52765677 Msa0076600:intron 45.0%
GGTAGTATGCATGAGGTCTT+AGG + chr1_2:52765665-52765684 Msa0076600:intron 45.0%
GTTGAGTTTCCCGAAACTAG+AGG - chr1_2:52765944-52765963 None:intergenic 45.0%
TATTGCAGCCAAATCCTGCT+TGG - chr1_2:52766166-52766185 None:intergenic 45.0%
CTCCACAACACGTGATTTAG+TGG - chr1_2:52766372-52766391 None:intergenic 45.0%
TTCTGAATTCTTGAGGTGGC+AGG - chr1_2:52766473-52766492 None:intergenic 45.0%
TCCTTCTGTGTCATCTGTTC+AGG + chr1_2:52766505-52766524 Msa0076600:CDS 45.0%
ACCTGAACAGATGACACAGA+AGG - chr1_2:52766509-52766528 None:intergenic 45.0%
!!! GCTGGACTCCACTTTTTCTT+TGG + chr1_2:52766626-52766645 Msa0076600:intron 45.0%
GGGGACATCCAAAGAAAAAG+TGG - chr1_2:52766637-52766656 None:intergenic 45.0%
TTCTTTGGATGTCCCCAAGA+TGG + chr1_2:52766641-52766660 Msa0076600:intron 45.0%
TGGATGTACTAGCCATCTTG+GGG - chr1_2:52766656-52766675 None:intergenic 45.0%
AGCGCCAAAAATACCCAACA+AGG + chr1_2:52766797-52766816 Msa0076600:CDS 45.0%
GCGCCAAAAATACCCAACAA+GGG + chr1_2:52766798-52766817 Msa0076600:CDS 45.0%
CTAAAGAAAGGGGATCAAGC+TGG + chr1_2:52766905-52766924 Msa0076600:CDS 45.0%
TGAGCAAGAAGTTCGTGAGA+TGG + chr1_2:52766976-52766995 Msa0076600:CDS 45.0%
CAAAGGCAACTTTGCTGATG+TGG + chr1_2:52767136-52767155 Msa0076600:intron 45.0%
GGTGATCTATGATGCTAGAG+AGG + chr1_2:52767471-52767490 Msa0076600:intron 45.0%
CACATGAAGCCAACGATAAG+TGG - chr1_2:52767629-52767648 None:intergenic 45.0%
ATTGTCTGAGTCTTCCTCAG+CGG + chr1_2:52767797-52767816 Msa0076600:intron 45.0%
TTGTTTAGTGACAGTGGTGG+TGG - chr1_2:52767894-52767913 None:intergenic 45.0%
TTAGGGACTCTTGGTCAACT+AGG + chr1_2:52767948-52767967 Msa0076600:CDS 45.0%
TTTCGAATTTCCCATCTCGG+AGG + chr1_2:52768262-52768281 Msa0076600:CDS 45.0%
TGGCAAACCTTACCAAGATC+AGG + chr1_2:52768404-52768423 Msa0076600:CDS 45.0%
TCTTGCTTAAAGAGAGGCCA+TGG - chr1_2:52768596-52768615 None:intergenic 45.0%
TGGCCTCTCTTTAAGCAAGA+AGG + chr1_2:52768596-52768615 Msa0076600:three_prime_UTR 45.0%
ATGTCCTTGAACCCTATTCC+AGG + chr1_2:52768647-52768666 Msa0076600:three_prime_UTR 45.0%
GAAAGAAGGAAGAGGAGGGA+GGG - chr1_2:52763090-52763109 None:intergenic 50.0%
AGAAAGAAGGAAGAGGAGGG+AGG - chr1_2:52763091-52763110 None:intergenic 50.0%
AGGTGTGGATAGCGAGAGAA+GGG - chr1_2:52763226-52763245 None:intergenic 50.0%
! AATGGAGAGTGCGGCGAAAA+GGG - chr1_2:52763249-52763268 None:intergenic 50.0%
! TGGAAGTGATGGGAGAGGAA+TGG - chr1_2:52763267-52763286 None:intergenic 50.0%
!! TGGGAAGAGTGTTCTGGGTT+GGG - chr1_2:52763332-52763351 None:intergenic 50.0%
GAATCTGGTCGGAGTTGAGT+TGG - chr1_2:52763399-52763418 None:intergenic 50.0%
TCCGACCAGATTCTTACACG+TGG + chr1_2:52763406-52763425 Msa0076600:CDS 50.0%
GCCACGTGTAAGAATCTGGT+CGG - chr1_2:52763410-52763429 None:intergenic 50.0%
ATCGGAGAGTAAAACGCCAC+TGG - chr1_2:52763614-52763633 None:intergenic 50.0%
! GGCGTTTTACTCTCCGATCA+AGG + chr1_2:52763616-52763635 Msa0076600:CDS 50.0%
GAGAGAACACTGGATGATCG+TGG + chr1_2:52764009-52764028 Msa0076600:CDS 50.0%
TGTCAGGGGGAATTCAACTC+TGG + chr1_2:52764955-52764974 Msa0076600:intron 50.0%
!! CGCTGTGAAAGGTATCCAGA+TGG + chr1_2:52765093-52765112 Msa0076600:CDS 50.0%
GAGACAACAGCGTCTTACAG+AGG + chr1_2:52765306-52765325 Msa0076600:CDS 50.0%
TCAGCTGATCGCCCTTTAAC+TGG + chr1_2:52765367-52765386 Msa0076600:CDS 50.0%
TCGCCCTTTAACTGGAAGTG+AGG + chr1_2:52765375-52765394 Msa0076600:CDS 50.0%
TAGTGTACTTACCCACCCAG+GGG + chr1_2:52765452-52765471 Msa0076600:intron 50.0%
AACATGTCATACCCCTGGGT+GGG - chr1_2:52765466-52765485 None:intergenic 50.0%
TGGGTACTTCCGAAGCTTCT+AGG + chr1_2:52765618-52765637 Msa0076600:intron 50.0%
TCGCAGGGATGGATAGAATG+AGG + chr1_2:52766058-52766077 Msa0076600:CDS 50.0%
AGACTATCGATGTGCCAAGC+AGG + chr1_2:52766149-52766168 Msa0076600:CDS 50.0%
TCGATGTGCCAAGCAGGATT+TGG + chr1_2:52766155-52766174 Msa0076600:CDS 50.0%
!! GTAACGTTTTCTGGCACTCC+TGG + chr1_2:52767658-52767677 Msa0076600:intron 50.0%
!! TTTAGTGACAGTGGTGGTGG+TGG - chr1_2:52767891-52767910 None:intergenic 50.0%
CTTGGTCAACTAGGAGTTGC+TGG + chr1_2:52767957-52767976 Msa0076600:CDS 50.0%
TTCTGCGCCTGATCTTGGTA+AGG - chr1_2:52768414-52768433 None:intergenic 50.0%
ACCAAGATCAGGCGCAGAAT+AGG + chr1_2:52768415-52768434 Msa0076600:CDS 50.0%
GCGCCTTCTTGCTTAAAGAG+AGG - chr1_2:52768602-52768621 None:intergenic 50.0%
GGGAGGGAGATATGGATGGA+TGG - chr1_2:52763074-52763093 None:intergenic 55.0%
AGGAGGGAGGGAGATATGGA+TGG - chr1_2:52763078-52763097 None:intergenic 55.0%
GAAGAGGAGGGAGGGAGATA+TGG - chr1_2:52763082-52763101 None:intergenic 55.0%
TGAAGAAGGGAGTAGGAGGG+AGG - chr1_2:52763179-52763198 None:intergenic 55.0%
GGGTGAAGAAGGGAGTAGGA+GGG - chr1_2:52763182-52763201 None:intergenic 55.0%
TGGTAGGGAGGGGTGAAGAA+GGG - chr1_2:52763192-52763211 None:intergenic 55.0%
ATGGTAGGGAGGGGTGAAGA+AGG - chr1_2:52763193-52763212 None:intergenic 55.0%
GTGTAAGGGATGGTAGGGAG+GGG - chr1_2:52763202-52763221 None:intergenic 55.0%
GGTGTAAGGGATGGTAGGGA+GGG - chr1_2:52763203-52763222 None:intergenic 55.0%
! AGGGGGTGTAAGGGATGGTA+GGG - chr1_2:52763207-52763226 None:intergenic 55.0%
! AAGGGGGTGTAAGGGATGGT+AGG - chr1_2:52763208-52763227 None:intergenic 55.0%
! AGAGAAGGGGGTGTAAGGGA+TGG - chr1_2:52763212-52763231 None:intergenic 55.0%
! AGCGAGAGAAGGGGGTGTAA+GGG - chr1_2:52763216-52763235 None:intergenic 55.0%
! TAGCGAGAGAAGGGGGTGTA+AGG - chr1_2:52763217-52763236 None:intergenic 55.0%
GTGTGGATAGCGAGAGAAGG+GGG - chr1_2:52763224-52763243 None:intergenic 55.0%
GGTGTGGATAGCGAGAGAAG+GGG - chr1_2:52763225-52763244 None:intergenic 55.0%
GAGGTGTGGATAGCGAGAGA+AGG - chr1_2:52763227-52763246 None:intergenic 55.0%
! GAATGGAGAGTGCGGCGAAA+AGG - chr1_2:52763250-52763269 None:intergenic 55.0%
TGGGAGAGGAATGGAGAGTG+CGG - chr1_2:52763258-52763277 None:intergenic 55.0%
! GAGTGTTCTGGGTTGGGCTT+GGG - chr1_2:52763326-52763345 None:intergenic 55.0%
! AGAGTGTTCTGGGTTGGGCT+TGG - chr1_2:52763327-52763346 None:intergenic 55.0%
!! CTGGGAAGAGTGTTCTGGGT+TGG - chr1_2:52763333-52763352 None:intergenic 55.0%
CAACCCAGAACACTCTTCCC+AGG + chr1_2:52763331-52763350 Msa0076600:CDS 55.0%
AACGCCACTGGTAACAGCAG+CGG - chr1_2:52763602-52763621 None:intergenic 55.0%
CAACATGTCATACCCCTGGG+TGG - chr1_2:52765467-52765486 None:intergenic 55.0%
AGAGCAGATCGAGCAGACAC+AGG - chr1_2:52765901-52765920 None:intergenic 55.0%
TAGATGGGTCGACGATCGCA+GGG + chr1_2:52766043-52766062 Msa0076600:CDS 55.0%
AGGGGATCAAGCTGGCTATC+AGG + chr1_2:52766913-52766932 Msa0076600:CDS 55.0%
CGAATTTCCCATCTCGGAGG+CGG + chr1_2:52768265-52768284 Msa0076600:CDS 55.0%
GAGGCGGCGTGTGATAGATA+AGG + chr1_2:52768281-52768300 Msa0076600:CDS 55.0%
GCCTATTCTGCGCCTGATCT+TGG - chr1_2:52768419-52768438 None:intergenic 55.0%
GGGGTGAAGAAGGGAGTAGG+AGG - chr1_2:52763183-52763202 None:intergenic 60.0%
GGAGGGGTGAAGAAGGGAGT+AGG - chr1_2:52763186-52763205 None:intergenic 60.0%
GGGTGTAAGGGATGGTAGGG+AGG - chr1_2:52763204-52763223 None:intergenic 60.0%
! TCTGGGTTGGGCTTGGGCTT+GGG - chr1_2:52763320-52763339 None:intergenic 60.0%
! TTCTGGGTTGGGCTTGGGCT+TGG - chr1_2:52763321-52763340 None:intergenic 60.0%
!! CCGCCTGGGAAGAGTGTTCT+GGG - chr1_2:52763337-52763356 None:intergenic 60.0%
CCCAGAACACTCTTCCCAGG+CGG + chr1_2:52763334-52763353 Msa0076600:CDS 60.0%
!! ACCGCCTGGGAAGAGTGTTC+TGG - chr1_2:52763338-52763357 None:intergenic 60.0%
! CAGGGCGTTTGTAACCGCCT+GGG - chr1_2:52763351-52763370 None:intergenic 60.0%
! TCAGGGCGTTTGTAACCGCC+TGG - chr1_2:52763352-52763371 None:intergenic 60.0%
CTAGATGGGTCGACGATCGC+AGG + chr1_2:52766042-52766061 Msa0076600:CDS 60.0%
!! AGTGACAGTGGTGGTGGTGG+TGG - chr1_2:52767888-52767907 None:intergenic 60.0%
GTGCGGCGAAAAGGGAGGTG+TGG - chr1_2:52763241-52763260 None:intergenic 65.0%
! GGAGAGTGCGGCGAAAAGGG+AGG - chr1_2:52763246-52763265 None:intergenic 65.0%
GGGCTTGGGCTTGGGCCTTA+GGG - chr1_2:52763312-52763331 None:intergenic 65.0%
TGGGCTTGGGCTTGGGCCTT+AGG - chr1_2:52763313-52763332 None:intergenic 65.0%
GCTGCCGCTGCTGTTACCAG+TGG + chr1_2:52763595-52763614 Msa0076600:CDS 65.0%
TGGGTCGACGATCGCAGGGA+TGG + chr1_2:52766047-52766066 Msa0076600:CDS 65.0%
!! AGTGGTGGTGGTGGTGGTGG+TGG - chr1_2:52767882-52767901 None:intergenic 65.0%
!! GACAGTGGTGGTGGTGGTGG+TGG - chr1_2:52767885-52767904 None:intergenic 65.0%
TCACACGCCGCCTCCGAGAT+GGG - chr1_2:52768275-52768294 None:intergenic 65.0%
ATCACACGCCGCCTCCGAGA+TGG - chr1_2:52768276-52768295 None:intergenic 65.0%
!! GGTGGTGGTGGTGGTGGTGG+TGG - chr1_2:52767867-52767886 None:intergenic 70.0%
!! GGTGGTGGTGGTGGTGGTGG+TGG - chr1_2:52767867-52767886 None:intergenic 70.0%
!! GGTGGTGGTGGTGGTGGTGG+TGG - chr1_2:52767867-52767886 None:intergenic 70.0%
!! GGTGGTGGTGGTGGTGGTGG+TGG - chr1_2:52767867-52767886 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 52763054 52768834 52763054 ID=Msa0076600;Name=Msa0076600
chr1_2 mRNA 52763054 52768834 52763054 ID=Msa0076600-mRNA-1;Parent=Msa0076600;Name=Msa0076600-mRNA-1;_AED=0.16;_eAED=0.16;_QI=88|1|1|1|1|1|10|301|926
chr1_2 exon 52763054 52764200 52763054 ID=Msa0076600-mRNA-1:exon:16258;Parent=Msa0076600-mRNA-1
chr1_2 exon 52764322 52764390 52764322 ID=Msa0076600-mRNA-1:exon:16259;Parent=Msa0076600-mRNA-1
chr1_2 exon 52764961 52765155 52764961 ID=Msa0076600-mRNA-1:exon:16260;Parent=Msa0076600-mRNA-1
chr1_2 exon 52765265 52765396 52765265 ID=Msa0076600-mRNA-1:exon:16261;Parent=Msa0076600-mRNA-1
chr1_2 exon 52765505 52765591 52765505 ID=Msa0076600-mRNA-1:exon:16262;Parent=Msa0076600-mRNA-1
chr1_2 exon 52765826 52766269 52765826 ID=Msa0076600-mRNA-1:exon:16263;Parent=Msa0076600-mRNA-1
chr1_2 exon 52766362 52766526 52766362 ID=Msa0076600-mRNA-1:exon:16264;Parent=Msa0076600-mRNA-1
chr1_2 exon 52766767 52766997 52766767 ID=Msa0076600-mRNA-1:exon:16265;Parent=Msa0076600-mRNA-1
chr1_2 exon 52767945 52768060 52767945 ID=Msa0076600-mRNA-1:exon:16266;Parent=Msa0076600-mRNA-1
chr1_2 exon 52768251 52768834 52768251 ID=Msa0076600-mRNA-1:exon:16267;Parent=Msa0076600-mRNA-1
chr1_2 five_prime_UTR 52763054 52763141 52763054 ID=Msa0076600-mRNA-1:five_prime_utr;Parent=Msa0076600-mRNA-1
chr1_2 CDS 52763142 52764200 52763142 ID=Msa0076600-mRNA-1:cds;Parent=Msa0076600-mRNA-1
chr1_2 CDS 52764322 52764390 52764322 ID=Msa0076600-mRNA-1:cds;Parent=Msa0076600-mRNA-1
chr1_2 CDS 52764961 52765155 52764961 ID=Msa0076600-mRNA-1:cds;Parent=Msa0076600-mRNA-1
chr1_2 CDS 52765265 52765396 52765265 ID=Msa0076600-mRNA-1:cds;Parent=Msa0076600-mRNA-1
chr1_2 CDS 52765505 52765591 52765505 ID=Msa0076600-mRNA-1:cds;Parent=Msa0076600-mRNA-1
chr1_2 CDS 52765826 52766269 52765826 ID=Msa0076600-mRNA-1:cds;Parent=Msa0076600-mRNA-1
chr1_2 CDS 52766362 52766526 52766362 ID=Msa0076600-mRNA-1:cds;Parent=Msa0076600-mRNA-1
chr1_2 CDS 52766767 52766997 52766767 ID=Msa0076600-mRNA-1:cds;Parent=Msa0076600-mRNA-1
chr1_2 CDS 52767945 52768060 52767945 ID=Msa0076600-mRNA-1:cds;Parent=Msa0076600-mRNA-1
chr1_2 CDS 52768251 52768533 52768251 ID=Msa0076600-mRNA-1:cds;Parent=Msa0076600-mRNA-1
chr1_2 three_prime_UTR 52768534 52768834 52768534 ID=Msa0076600-mRNA-1:three_prime_utr;Parent=Msa0076600-mRNA-1
Gene Sequence

>Msa0076600

ATGGTACCCTGTTCCATAATAACCCCTTCTTATTCCTCCCTCCTACTCCCTTCTTCACCCCTCCCTACCATCCCTTACACCCCCTTCTCTCGCTATCCACACCTCCCTTTTCGCCGCACTCTCCATTCCTCTCCCATCACTTCCAATAATGCCTCTCGTCATTTCTTCCCTAAGGCCCAAGCCCAAGCCCAACCCAGAACACTCTTCCCAGGCGGTTACAAACGCCCTGAACTCAAAGTCCCTACTCTCATTCTCCAACTCAACTCCGACCAGATTCTTACACGTGGCGAATCCGCACTAGACTTGATCGATAAAGCAGTTTCCAAATCGGTTGGAATTGTGATTCTAACCAGTAATGAACAAAGTGGTGGTAAACTCTATGAAGCTGCTTGTTTGTTGAAATCACTTATTCGTGATCGCGCTTATTTGTTAGTTGCTGAGCGTGTTGATATCGCTGCCGCTGCTGTTACCAGTGGCGTTTTACTCTCCGATCAAGGTCTTCCTACTGTTGTTGCTAGGAATACAATGTTAGGTTCCAATAGCGAATTGGTGGTTCTTCCATTGGTCGCTAGATTTGTACAAACTGTAGATGCTGCTGTAAATGCATCCAAATCTGAAGGTGCTGATTTTCTTATTTATGGTGGTGGTGGCGGCGATTTGAAACTTTTAAATCAAGAAATTGGTAATGTAGTTGACAATGTGAAGATACCGATTTTTGCCTCTTTTGTGGGGAAAAACTTGTCATACGATGAGGCTTCGAGTTTACTTGCTTCTGGTGCTAGTGGTTTTGTTACTAGTTTGGAAAGTTTTGGGATGTTTGACGATGATTTCCTTCGTAAATTATTTGATGGTGGGTTTGCAAATGATGAGAGAACACTGGATGATCGTGGTGATAAAATTGATGATGATAAATTAGTCAATGAGAGTAATGGTTTGCAGAGTATAACAGAGGTTGTGGGTGGATTTGTTAAACTGGAAGATAGGGAGAAACAGTTAATAGAAATGGAGAGGTCGGTGTTGAATGAAGCTATTGAAGTTATAAAGAAAGCTGCACCTCTGATGGAGGAAGTTTCGCTTCTTGATGATGCAGTTTCTCAGATTGACGAGCCGTTCTTATTGGTCATAGTGGGGGAATTCAACTCTGGCAAATCTACTGTGATTAATGCGCTTCTTGGAGAAAGATATCTCAAAGACGGGGTTGTTCCAACAACGAATGAGATCACATTTTTACGATATAATGACCTAGATATTGAAAAACAACGCTGTGAAAGGTATCCAGATGGTCAATATATTTGCTACCTTCCAGCTCCAATTCTTAGAGAAATGACAATTGTTGATACACCTGGAACTAATGTAATCCTTCAGAGACAACAGCGTCTTACAGAGGAATTTGTGCCTCGTGCAGACTTGCTTCTTTTTGTTATTTCAGCTGATCGCCCTTTAACTGGAAGTGAGGTTGCTTTTCTTCGTTATTCACAGCAATGGAAGAAGAAAGTGGTCTTTGTTTTGAACAAAGCTGACATTTATCAGAATAATCATGAGCTTGAGGAAGCAATGTCCTTCATTAAGGACAACGTAAAGAGATTGTTGAATACGGAAGATGTGATATTATATCCTGTGTCTGCTCGATCTGCTCTTGAAGCAAAACTTATGGCTACCTCTAGTTTCGGGAAACTCAACGAAGAATTGTTGTCAGTCTCTGGTTCTCAATATGGTCCCAATAGCTTTTACGAGCTTGAGAAATTTTTATATAGCTTTCTAGATGGGTCGACGATCGCAGGGATGGATAGAATGAGGCTTAAACTTGAAACACCTGTTGGAATTGCAGACAGATTGATTTCTGCATGTGAAACTCTTGTGACACAAGACTATCGATGTGCCAAGCAGGATTTGGCTGCAATAAACGATGTTGTCAACAGTGTAAATGATTTTGCATTGAATATGGAAAATGAGAGCCTTTCTTGGAGGAAACAAACTCTATCCATGATTGAATCCACTAAATCACGTGTTGTGGAGCTTGTAGAAGCTACAATGCAATTGTCAAATCTTGATATTGTTGTATCATATGTTTTCAAAGGAGAGAAACATGCGACACCTGCCACCTCAAGAATTCAGAATGACATAATTGATCCTTCTGTGTCATCTGTTCAGAAAATACTTGGAGATTATGCAAATTGGTTAAGCGCCAAAAATACCCAACAAGGGAGAATATACAAGGAATCTTTTGAGAAGCGATGGTCCTCATTGATTCATGAAAATAGTCAGAAGAATTCTGAGACATATGAGTTGCTAAAGAAAGGGGATCAAGCTGGCTATCAGGTGATTGAAAATTTCAGCAGCAGTGCAGTTTCAAAGTCATTTGAGCAAGAAGTTCGTGAGATGATTTTAGGGACTCTTGGTCAACTAGGAGTTGCTGGTTTTTCTGCTTCACTATTGACATCTGTACTGCAAACCACATTGGAAGATCTTCTTGCTCTTGGAATTTGTTCTGTTGGCGGGTATATAGCTATTTCGAATTTCCCATCTCGGAGGCGGCGTGTGATAGATAAGGTGAAAAGGAAAGCAGATACCTTGGCGAATGAACTTGAAGAAGCCATGAAGAGGGATTTGACTGAAGCAGTAGAAAATTTGGATACCTTTGTGAGAGTCATTGGCAAACCTTACCAAGATCAGGCGCAGAATAGGCTAAACAAGCTAGTTGAGACTCAAGAAGAAATATCAAATATTGAAAAGAAACTTAGAACACTACAAATTGATATCCAAAATCTTCATGTGTCCTGA
Protein sequence

>Msa0076600

MVPCSIITPSYSSLLLPSSPLPTIPYTPFSRYPHLPFRRTLHSSPITSNNASRHFFPKAQAQAQPRTLFPGGYKRPELKVPTLILQLNSDQILTRGESALDLIDKAVSKSVGIVILTSNEQSGGKLYEAACLLKSLIRDRAYLLVAERVDIAAAAVTSGVLLSDQGLPTVVARNTMLGSNSELVVLPLVARFVQTVDAAVNASKSEGADFLIYGGGGGDLKLLNQEIGNVVDNVKIPIFASFVGKNLSYDEASSLLASGASGFVTSLESFGMFDDDFLRKLFDGGFANDERTLDDRGDKIDDDKLVNESNGLQSITEVVGGFVKLEDREKQLIEMERSVLNEAIEVIKKAAPLMEEVSLLDDAVSQIDEPFLLVIVGEFNSGKSTVINALLGERYLKDGVVPTTNEITFLRYNDLDIEKQRCERYPDGQYICYLPAPILREMTIVDTPGTNVILQRQQRLTEEFVPRADLLLFVISADRPLTGSEVAFLRYSQQWKKKVVFVLNKADIYQNNHELEEAMSFIKDNVKRLLNTEDVILYPVSARSALEAKLMATSSFGKLNEELLSVSGSQYGPNSFYELEKFLYSFLDGSTIAGMDRMRLKLETPVGIADRLISACETLVTQDYRCAKQDLAAINDVVNSVNDFALNMENESLSWRKQTLSMIESTKSRVVELVEATMQLSNLDIVVSYVFKGEKHATPATSRIQNDIIDPSVSSVQKILGDYANWLSAKNTQQGRIYKESFEKRWSSLIHENSQKNSETYELLKKGDQAGYQVIENFSSSAVSKSFEQEVREMILGTLGQLGVAGFSASLLTSVLQTTLEDLLALGICSVGGYIAISNFPSRRRRVIDKVKRKADTLANELEEAMKRDLTEAVENLDTFVRVIGKPYQDQAQNRLNKLVETQEEISNIEKKLRTLQIDIQNLHVS*