AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0121980


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 22 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTTAGCATGTGACCTTTG+AGG 0.353184 1_3:+48228323 None:intergenic
CTGCTTCACCAACATGAATC+TGG 0.364511 1_3:-48228347 Msa0121980:CDS
CATTATATTTCCAACTGCTT+AGG 0.418478 1_3:-48228129 Msa0121980:CDS
ATAATGATTGAAAGGAAGGA+TGG 0.479050 1_3:+48228146 None:intergenic
AAATATAATGATTGAAAGGA+AGG 0.493789 1_3:+48228142 None:intergenic
GAGAAAGAAGCATGTTGTGA+AGG 0.497538 1_3:+48231529 None:intergenic
ACAATGCTTGCCTAAGCAGT+TGG 0.510538 1_3:+48228119 None:intergenic
TCAATTTCATATACCTCTGA+AGG 0.518557 1_3:+48231263 None:intergenic
GTTCTCCCTCACATCTCTAG+AGG 0.527823 1_3:-48231494 Msa0121980:intron
CAAAGGTCACATGCTAAGCA+AGG 0.537054 1_3:-48228320 Msa0121980:CDS
TAGAGATGTGAGGGAGAACA+AGG 0.538015 1_3:+48231498 None:intergenic
TTGGAAATATAATGATTGAA+AGG 0.539989 1_3:+48228138 None:intergenic
CATTGTTCAATTGTCTGCAT+AGG 0.540756 1_3:-48228102 None:intergenic
TAATGATTGAAAGGAAGGAT+GGG 0.567263 1_3:+48228147 None:intergenic
GCATACCAAATATGGAGCAT+AGG 0.583047 1_3:-48231556 None:intergenic
ACAAACCTCTAGAGATGTGA+GGG 0.583858 1_3:+48231489 None:intergenic
TTTGAGGTCCAGATTCATGT+TGG 0.590117 1_3:+48228339 None:intergenic
AAAGGTCACATGCTAAGCAA+GGG 0.591140 1_3:-48228319 Msa0121980:CDS
AGATGCAATATTGCCTTCAG+AGG 0.609416 1_3:-48231276 Msa0121980:intron
AACAAACCTCTAGAGATGTG+AGG 0.636510 1_3:+48231488 None:intergenic
AAGGTCACATGCTAAGCAAG+GGG 0.647813 1_3:-48228318 Msa0121980:CDS
AACATGAATCTGGACCTCAA+AGG 0.683442 1_3:-48228337 Msa0121980:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAATTAATTGTATATTAC+AGG - chr1_3:48228345-48228364 Msa0121980:CDS 10.0%
!! AAGTTTAAACTTATAATGTT+AGG - chr1_3:48228260-48228279 Msa0121980:CDS 15.0%
!! GTATATGAAATTGATTATAA+AGG - chr1_3:48228396-48228415 Msa0121980:intron 15.0%
!!! AATTATTTTTTTTGAACAAG+CGG - chr1_3:48228895-48228914 Msa0121980:intron 15.0%
!! TATGATCAAATTGTAATTAA+AGG - chr1_3:48228938-48228957 Msa0121980:intron 15.0%
!! TAAAAATGATTATTTCATGT+AGG - chr1_3:48229216-48229235 Msa0121980:intron 15.0%
!!! AATTTGTATTTAGATTTTGT+CGG + chr1_3:48231246-48231265 None:intergenic 15.0%
!!! AGTAAGTTGTATAATTTTGT+TGG - chr1_3:48228295-48228314 Msa0121980:CDS 20.0%
!! ATTGAATGATATTTATGATG+AGG + chr1_3:48228450-48228469 None:intergenic 20.0%
!! ATAAATATCATTCAATTCCA+AGG - chr1_3:48228454-48228473 Msa0121980:intron 20.0%
!! TATTGTCTAATAACATAGAA+GGG + chr1_3:48228574-48228593 None:intergenic 20.0%
!! TTATTGTCTAATAACATAGA+AGG + chr1_3:48228575-48228594 None:intergenic 20.0%
!!! TTTATTTCTTCTATGTTACT+AGG - chr1_3:48228726-48228745 Msa0121980:intron 20.0%
!!! TCAAAAGTGTCAAAAATAAA+TGG + chr1_3:48229490-48229509 None:intergenic 20.0%
!! ATATATAATGAATAGAGAGT+TGG - chr1_3:48229864-48229883 Msa0121980:intron 20.0%
!! TATATAATGAATAGAGAGTT+GGG - chr1_3:48229865-48229884 Msa0121980:intron 20.0%
!! TACAATCAAAAAACAGTTAT+AGG + chr1_3:48229909-48229928 None:intergenic 20.0%
!!! ATAACTGTTTTTTGATTGTA+TGG - chr1_3:48229909-48229928 Msa0121980:intron 20.0%
!! AAAAATTAGATTGAATCACT+TGG - chr1_3:48229976-48229995 Msa0121980:intron 20.0%
!!! ACTGAATATAAACTCATTTT+TGG + chr1_3:48230497-48230516 None:intergenic 20.0%
!! ATTTAGATTAAATGGATCAA+TGG + chr1_3:48230803-48230822 None:intergenic 20.0%
!! AAGGTGAAATTTAGATTAAA+TGG + chr1_3:48230811-48230830 None:intergenic 20.0%
!! AAATATAATGATTGAAAGGA+AGG + chr1_3:48231511-48231530 None:intergenic 20.0%
!! TTGGAAATATAATGATTGAA+AGG + chr1_3:48231515-48231534 None:intergenic 20.0%
!! TTAGACAATAATTTTGTTCG+AGG - chr1_3:48228584-48228603 Msa0121980:intron 25.0%
!!! TTTGTTTGTTTGTTATGTTG+TGG - chr1_3:48228655-48228674 Msa0121980:intron 25.0%
!!! TTGTTTGTTTGTTATGTTGT+GGG - chr1_3:48228656-48228675 Msa0121980:intron 25.0%
!!! TTTGGTATTTTTGACACTTT+TGG - chr1_3:48228849-48228868 Msa0121980:intron 25.0%
! GACTTAAAATTGCTTGATAA+TGG - chr1_3:48229069-48229088 Msa0121980:intron 25.0%
! AATATTGTGTTTACGAGAAT+TGG - chr1_3:48229592-48229611 Msa0121980:intron 25.0%
! TATATATACTATCTCTCGAA+AGG + chr1_3:48229851-48229870 None:intergenic 25.0%
! GTTAGTTAATTAGTTGCAAT+AGG + chr1_3:48230075-48230094 None:intergenic 25.0%
! ATCTTAGAAACCTTGAATTA+AGG + chr1_3:48230162-48230181 None:intergenic 25.0%
! TTTCAAATACTTGAAGTCTA+AGG + chr1_3:48230215-48230234 None:intergenic 25.0%
!! GAGAGTATGAAATCATAATA+TGG + chr1_3:48230326-48230345 None:intergenic 25.0%
! GTAATTTACATCAAGAACAA+GGG + chr1_3:48230439-48230458 None:intergenic 25.0%
! TGTAATTTACATCAAGAACA+AGG + chr1_3:48230440-48230459 None:intergenic 25.0%
! AAAGTAATTGAAAGGAATCA+AGG + chr1_3:48230891-48230910 None:intergenic 25.0%
! GATTTATCTCAATCTTTAGA+AGG + chr1_3:48230967-48230986 None:intergenic 25.0%
! TCTACAGAATTCATCTATAA+AGG - chr1_3:48230995-48231014 Msa0121980:intron 25.0%
! CTCTTCAATTTAAATTCCAA+AGG + chr1_3:48231170-48231189 None:intergenic 25.0%
TCAATTTCATATACCTCTGA+AGG + chr1_3:48228390-48228409 None:intergenic 30.0%
GAATGATATTTATGATGAGG+AGG + chr1_3:48228447-48228466 None:intergenic 30.0%
!!! GTTTTGACTAAGTTTTTCCT+TGG + chr1_3:48228474-48228493 None:intergenic 30.0%
CTAAATATATACACCTCTCA+CGG - chr1_3:48228619-48228638 Msa0121980:intron 30.0%
ATTTCTTCTATGTTACTAGG+CGG - chr1_3:48228729-48228748 Msa0121980:intron 30.0%
ACTAAATTACCTACAGGAAA+AGG - chr1_3:48228809-48228828 Msa0121980:intron 30.0%
GAACTAGGGAATAGAATATT+TGG - chr1_3:48228831-48228850 Msa0121980:intron 30.0%
AGACATAGCTAACATTAATG+CGG - chr1_3:48229141-48229160 Msa0121980:intron 30.0%
AGAAACCTAACAAAAAAGAC+AGG - chr1_3:48229251-48229270 Msa0121980:intron 30.0%
!!! TTGATCCTGTCTTTTTTGTT+AGG + chr1_3:48229259-48229278 None:intergenic 30.0%
!!! ACAGGATCAAATTAGTTTTC+AGG - chr1_3:48229269-48229288 Msa0121980:intron 30.0%
TTTCATCACTTGTGAGATTA+GGG - chr1_3:48229365-48229384 Msa0121980:intron 30.0%
CAATTTGTACTCTATGTAGA+AGG + chr1_3:48229537-48229556 None:intergenic 30.0%
TCTCGTAAACACAATATTCA+TGG + chr1_3:48229590-48229609 None:intergenic 30.0%
!!! ATTGGTTTTTCCATCCAAAA+AGG - chr1_3:48229610-48229629 Msa0121980:intron 30.0%
TAAATTTAATTCTCCACTGC+AGG - chr1_3:48229748-48229767 Msa0121980:intron 30.0%
!! AGGAAGCTTCTAAAGTTAAA+TGG - chr1_3:48229792-48229811 Msa0121980:intron 30.0%
!! AAGTTAAATGGACTACTACT+TGG - chr1_3:48229804-48229823 Msa0121980:intron 30.0%
AGAGTTGGGATATTATTTCA+TGG - chr1_3:48229879-48229898 Msa0121980:intron 30.0%
TCATGATGCTAAAGATTGAT+TGG - chr1_3:48230049-48230068 Msa0121980:intron 30.0%
TTAGAAACCTTGAATTAAGG+AGG + chr1_3:48230159-48230178 None:intergenic 30.0%
TGAGGTGAAATAAAAAGGTT+TGG + chr1_3:48230559-48230578 None:intergenic 30.0%
! GCATTTGAGGTGAAATAAAA+AGG + chr1_3:48230564-48230583 None:intergenic 30.0%
TATTTCACCTCAAATGCAAA+TGG - chr1_3:48230567-48230586 Msa0121980:intron 30.0%
TAAGTAGAAACCAAAACTAG+TGG + chr1_3:48230779-48230798 None:intergenic 30.0%
TGTTGTTAAATGGGTGTTTA+AGG + chr1_3:48230830-48230849 None:intergenic 30.0%
AACACCCATTTAACAACAAA+TGG - chr1_3:48230832-48230851 Msa0121980:intron 30.0%
!! GCATCCATTTGTTGTTAAAT+GGG + chr1_3:48230839-48230858 None:intergenic 30.0%
!! AGCATCCATTTGTTGTTAAA+TGG + chr1_3:48230840-48230859 None:intergenic 30.0%
TAATTGAAAGGAATCAAGGA+GGG + chr1_3:48230887-48230906 None:intergenic 30.0%
AAGAGCTGAAAGTAATTGAA+AGG + chr1_3:48230899-48230918 None:intergenic 30.0%
ATGAATTCTGTAGAATGTTG+TGG + chr1_3:48230989-48231008 None:intergenic 30.0%
TATTTATTTCCACCAAGTGA+CGG - chr1_3:48231025-48231044 Msa0121980:intron 30.0%
GTTTGATGAGTAAAATGCTT+AGG + chr1_3:48231135-48231154 None:intergenic 30.0%
AAACAACTTTCATACACCTT+TGG - chr1_3:48231151-48231170 Msa0121980:intron 30.0%
TTAAGCCAATTGAAGTCAAA+GGG + chr1_3:48231208-48231227 None:intergenic 30.0%
TTTAAGCCAATTGAAGTCAA+AGG + chr1_3:48231209-48231228 None:intergenic 30.0%
! AAGTGTTACAAGTTGAATCT+CGG + chr1_3:48231269-48231288 None:intergenic 30.0%
! GAGTCATAGAAGAATTTTGA+AGG + chr1_3:48231358-48231377 None:intergenic 30.0%
TAATGATTGAAAGGAAGGAT+GGG + chr1_3:48231506-48231525 None:intergenic 30.0%
ATAATGATTGAAAGGAAGGA+TGG + chr1_3:48231507-48231526 None:intergenic 30.0%
CATTATATTTCCAACTGCTT+AGG - chr1_3:48231521-48231540 Msa0121980:CDS 30.0%
TGATATTTATGATGAGGAGG+AGG + chr1_3:48228444-48228463 None:intergenic 35.0%
AGTCAAAACAGAGAAAGCTT+TGG - chr1_3:48228485-48228504 Msa0121980:intron 35.0%
GTCAAAACAGAGAAAGCTTT+GGG - chr1_3:48228486-48228505 Msa0121980:intron 35.0%
!! AGAGAAAGCTTTGGGTAAAA+TGG - chr1_3:48228494-48228513 Msa0121980:intron 35.0%
!! GAGAAAGCTTTGGGTAAAAT+GGG - chr1_3:48228495-48228514 Msa0121980:intron 35.0%
!! TGCTACTTTGGCAACAAATA+AGG - chr1_3:48228527-48228546 Msa0121980:intron 35.0%
! ATCTCTTTTGCTAGACTTCA+TGG - chr1_3:48228685-48228704 Msa0121980:intron 35.0%
TGTAGGTAATTTAGTGTTCC+AGG + chr1_3:48228804-48228823 None:intergenic 35.0%
TGGAACACTAAATTACCTAC+AGG - chr1_3:48228803-48228822 Msa0121980:intron 35.0%
! CTTTTGGATAAATATGCTGC+TGG - chr1_3:48228865-48228884 Msa0121980:intron 35.0%
GAGATTAAAGTCTAGTGTGT+TGG - chr1_3:48229038-48229057 Msa0121980:intron 35.0%
GTTAAATGCAGAGAGAATGA+GGG - chr1_3:48229091-48229110 Msa0121980:intron 35.0%
AGAATGAGGGAGTTTGAATT+AGG - chr1_3:48229104-48229123 Msa0121980:intron 35.0%
AAGTGATGAAACTCAGTCAA+TGG + chr1_3:48229356-48229375 None:intergenic 35.0%
GTTTCATCACTTGTGAGATT+AGG - chr1_3:48229364-48229383 Msa0121980:intron 35.0%
CAATCTTAAAAGTTGCGTCA+AGG - chr1_3:48229413-48229432 Msa0121980:intron 35.0%
ATAACACGCTTTCTCATGTT+TGG + chr1_3:48229446-48229465 None:intergenic 35.0%
TACTCTATGTAGAAGGTCAA+CGG + chr1_3:48229530-48229549 None:intergenic 35.0%
AACACAATATTCATGGACCT+AGG + chr1_3:48229583-48229602 None:intergenic 35.0%
CAGATTCTTCTTCGAAGTAA+AGG + chr1_3:48229939-48229958 None:intergenic 35.0%
! GAATCACTTGGTTGAACTTT+TGG - chr1_3:48229988-48230007 Msa0121980:intron 35.0%
! AAGCTCAATAAGGCCTTTTA+TGG + chr1_3:48230536-48230555 None:intergenic 35.0%
AAAGGTTTGGAAGCTCAATA+AGG + chr1_3:48230546-48230565 None:intergenic 35.0%
AAGTGATGCATTCAAGAAAG+TGG - chr1_3:48230614-48230633 Msa0121980:intron 35.0%
! AAGTGGATTTGATGTGAAGT+TGG - chr1_3:48230631-48230650 Msa0121980:intron 35.0%
! CTACAAATGGCTGGTTAATT+TGG + chr1_3:48230745-48230764 None:intergenic 35.0%
AAAAGCTATCTACAAATGGC+TGG + chr1_3:48230754-48230773 None:intergenic 35.0%
GGCAAAAAGCTATCTACAAA+TGG + chr1_3:48230758-48230777 None:intergenic 35.0%
!! TAGCTTTTTGCCACTAGTTT+TGG - chr1_3:48230766-48230785 Msa0121980:intron 35.0%
GTAATTGAAAGGAATCAAGG+AGG + chr1_3:48230888-48230907 None:intergenic 35.0%
CAATTACTTTCAGCTCTTCA+AGG - chr1_3:48230901-48230920 Msa0121980:intron 35.0%
GCTGTTCGTTATAATGTATG+CGG + chr1_3:48231064-48231083 None:intergenic 35.0%
TAGTTCCTATGTTCCTATGA+GGG + chr1_3:48231104-48231123 None:intergenic 35.0%
TTAGTTCCTATGTTCCTATG+AGG + chr1_3:48231105-48231124 None:intergenic 35.0%
CATAGGAACATAGGAACTAA+TGG - chr1_3:48231105-48231124 Msa0121980:intron 35.0%
! GAGAAAGAAGCATGTTGTGA+AGG + chr1_3:48228124-48228143 None:intergenic 40.0%
! ACAAACCTCTAGAGATGTGA+GGG + chr1_3:48228164-48228183 None:intergenic 40.0%
! AACAAACCTCTAGAGATGTG+AGG + chr1_3:48228165-48228184 None:intergenic 40.0%
AGATGCAATATTGCCTTCAG+AGG - chr1_3:48228374-48228393 Msa0121980:intron 40.0%
TGTTCAATCTAAACCGTGAG+AGG + chr1_3:48228635-48228654 None:intergenic 40.0%
CACACTAAATTACTCATGCC+TGG - chr1_3:48228783-48228802 Msa0121980:intron 40.0%
TACCTACAGGAAAAGGAACT+AGG - chr1_3:48228816-48228835 Msa0121980:intron 40.0%
ACCTACAGGAAAAGGAACTA+GGG - chr1_3:48228817-48228836 Msa0121980:intron 40.0%
GGTTAAATGCAGAGAGAATG+AGG - chr1_3:48229090-48229109 Msa0121980:intron 40.0%
! TGCGGATTGAATCTAGTTGA+AGG - chr1_3:48229159-48229178 Msa0121980:intron 40.0%
! GCGGATTGAATCTAGTTGAA+GGG - chr1_3:48229160-48229179 Msa0121980:intron 40.0%
TGCACAATATTCGTCACAAG+TGG + chr1_3:48229195-48229214 None:intergenic 40.0%
AAAAGTTGCGTCAAGGAAAG+TGG - chr1_3:48229420-48229439 Msa0121980:intron 40.0%
!!! TTTTGACTTTCTAGCACGAG+AGG - chr1_3:48229504-48229523 Msa0121980:intron 40.0%
ACAACAATGTCATGTCTCCT+AGG - chr1_3:48229563-48229582 Msa0121980:intron 40.0%
TAAGAAAGTCCATGGATGAG+AGG - chr1_3:48229772-48229791 Msa0121980:intron 40.0%
CAACACACCTCCTTAATTCA+AGG - chr1_3:48230149-48230168 Msa0121980:intron 40.0%
TCCAAGCATGACTCCATAAA+AGG - chr1_3:48230520-48230539 Msa0121980:intron 40.0%
AACCTAGCCATTTGCATTTG+AGG + chr1_3:48230577-48230596 None:intergenic 40.0%
CTTGAATGCATCACTTGAAG+AGG + chr1_3:48230610-48230629 None:intergenic 40.0%
CGCTTACAAACTGAAATGGA+TGG + chr1_3:48230665-48230684 None:intergenic 40.0%
GTAGCGCTTACAAACTGAAA+TGG + chr1_3:48230669-48230688 None:intergenic 40.0%
AAAGCTTGAGACAGTGAGAT+TGG + chr1_3:48230694-48230713 None:intergenic 40.0%
! GGTTAATTTGGACTGCTAAG+AGG + chr1_3:48230733-48230752 None:intergenic 40.0%
! AAGTCAAAGGGTATGGTGAA+TGG + chr1_3:48231196-48231215 None:intergenic 40.0%
CCAATTGAAGTCAAAGGGTA+TGG + chr1_3:48231203-48231222 None:intergenic 40.0%
! CCATACCCTTTGACTTCAAT+TGG - chr1_3:48231200-48231219 Msa0121980:intron 40.0%
! TTTGAGGTCCAGATTCATGT+TGG + chr1_3:48231314-48231333 None:intergenic 40.0%
AACATGAATCTGGACCTCAA+AGG - chr1_3:48231313-48231332 Msa0121980:intron 40.0%
AAAGGTCACATGCTAAGCAA+GGG - chr1_3:48231331-48231350 Msa0121980:intron 40.0%
TAGAGATGTGAGGGAGAACA+AGG + chr1_3:48228155-48228174 None:intergenic 45.0%
!! GGGTGTTAGTAGTGCTACTT+TGG - chr1_3:48228515-48228534 Msa0121980:intron 45.0%
! CTAGGCGGTAATTTTGTTCG+AGG - chr1_3:48228744-48228763 Msa0121980:intron 45.0%
! TCCCTAGTTCCTTTTCCTGT+AGG + chr1_3:48228821-48228840 None:intergenic 45.0%
TGGACTTTCTTAACCTGCAG+TGG + chr1_3:48229764-48229783 None:intergenic 45.0%
CTGCAGGTTAAGAAAGTCCA+TGG - chr1_3:48229764-48229783 Msa0121980:intron 45.0%
TAGAAGCTTCCTCTCATCCA+TGG + chr1_3:48229784-48229803 None:intergenic 45.0%
TTTCTCAGCACAAGCAGTGA+TGG + chr1_3:48230368-48230387 None:intergenic 45.0%
! GCCTTTTATGGAGTCATGCT+TGG + chr1_3:48230524-48230543 None:intergenic 45.0%
CACCTCAAATGCAAATGGCT+AGG - chr1_3:48230572-48230591 Msa0121980:intron 45.0%
GAATGCATCACTTGAAGAGG+AGG + chr1_3:48230607-48230626 None:intergenic 45.0%
CTAAGAGGTTTCTGCATCAG+TGG + chr1_3:48230718-48230737 None:intergenic 45.0%
AAAGGAATCAAGGAGGGAGT+TGG + chr1_3:48230881-48230900 None:intergenic 45.0%
TAATGTATGCGGACCACTTG+AGG + chr1_3:48231053-48231072 None:intergenic 45.0%
TATGTTCCTATGAGGGCCAA+GGG + chr1_3:48231097-48231116 None:intergenic 45.0%
CTGCTTCACCAACATGAATC+TGG - chr1_3:48231303-48231322 Msa0121980:intron 45.0%
TGCTTAGCATGTGACCTTTG+AGG + chr1_3:48231330-48231349 None:intergenic 45.0%
CAAAGGTCACATGCTAAGCA+AGG - chr1_3:48231330-48231349 Msa0121980:intron 45.0%
AAGGTCACATGCTAAGCAAG+GGG - chr1_3:48231332-48231351 Msa0121980:intron 45.0%
ACAATGCTTGCCTAAGCAGT+TGG + chr1_3:48231534-48231553 None:intergenic 45.0%
!! TATATAGATAAAAATTTAAT+TGG - chr1_3:48229318-48229337 Msa0121980:intron 5.0%
!! ATATAGATAAAAATTTAATT+GGG - chr1_3:48229319-48229338 Msa0121980:intron 5.0%
GTTCTCCCTCACATCTCTAG+AGG - chr1_3:48228156-48228175 Msa0121980:CDS 50.0%
GAACCGATGAGTGTGTCTCA+GGG + chr1_3:48228422-48228441 None:intergenic 50.0%
TTGTTCGAGGCATGAGTGCA+TGG - chr1_3:48228757-48228776 Msa0121980:intron 50.0%
CTATGTTCCTATGAGGGCCA+AGG + chr1_3:48231098-48231117 None:intergenic 50.0%
CTTGGCCCTCATAGGAACAT+AGG - chr1_3:48231096-48231115 Msa0121980:intron 50.0%
AGGCCCTGAGACACACTCAT+CGG - chr1_3:48228416-48228435 Msa0121980:intron 55.0%
GGAACCGATGAGTGTGTCTC+AGG + chr1_3:48228423-48228442 None:intergenic 55.0%
! CGCTGCTAGGCCTTTTTGGA+TGG + chr1_3:48229623-48229642 None:intergenic 55.0%
AGACAACAAGCTGCGCTGCT+AGG + chr1_3:48229636-48229655 None:intergenic 55.0%
! CAGCACAAGCAGTGATGGAG+AGG + chr1_3:48230363-48230382 None:intergenic 55.0%
AACAGCTCCTAGCACTCCCT+TGG - chr1_3:48231078-48231097 Msa0121980:intron 55.0%
! GCTGCGCTGCTAGGCCTTTT+TGG + chr1_3:48229627-48229646 None:intergenic 60.0%
!! CTTGAGGTGCCGTCACTTGG+TGG + chr1_3:48231037-48231056 None:intergenic 60.0%
!! CCACTTGAGGTGCCGTCACT+TGG + chr1_3:48231040-48231059 None:intergenic 60.0%
CCAAGTGACGGCACCTCAAG+TGG - chr1_3:48231037-48231056 Msa0121980:intron 60.0%
!! ATGAGGGCCAAGGGAGTGCT+AGG + chr1_3:48231088-48231107 None:intergenic 60.0%
AGCACTCCCTTGGCCCTCAT+AGG - chr1_3:48231088-48231107 Msa0121980:intron 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 48228105 48231567 48228105 ID=Msa0121980;Name=Msa0121980
chr1_3 mRNA 48228105 48231567 48228105 ID=Msa0121980-mRNA-1;Parent=Msa0121980;Name=Msa0121980-mRNA-1;_AED=0.34;_eAED=0.34;_QI=0|0|0|1|0.5|0.33|3|0|125
chr1_3 exon 48231495 48231567 48231495 ID=Msa0121980-mRNA-1:exon:14557;Parent=Msa0121980-mRNA-1
chr1_3 exon 48231277 48231305 48231277 ID=Msa0121980-mRNA-1:exon:14556;Parent=Msa0121980-mRNA-1
chr1_3 exon 48228105 48228377 48228105 ID=Msa0121980-mRNA-1:exon:14555;Parent=Msa0121980-mRNA-1
chr1_3 CDS 48231495 48231567 48231495 ID=Msa0121980-mRNA-1:cds;Parent=Msa0121980-mRNA-1
chr1_3 CDS 48231277 48231305 48231277 ID=Msa0121980-mRNA-1:cds;Parent=Msa0121980-mRNA-1
chr1_3 CDS 48228105 48228377 48228105 ID=Msa0121980-mRNA-1:cds;Parent=Msa0121980-mRNA-1
Gene Sequence

>Msa0121980

ATGGAGCATAGGTCTACCTTCACAACATGCTTCTTTCTCTTTCTCTTCCTTGTTCTCCCTCACATCTCTAGAGGAGAATCAGATGCAATATTGCCTTCAGAGATAAGCATCTGCTTCACCAACATGAATCTGGACCTCAAAGGTCACATGCTAAGCAAGGGGCCTTCAAAATTCTTCTATGACTCAAATCAAATATCTCTTGTGTTCAAGCTGCATTTGCATAGTGAAAACTTTTTTCAAAGTTGTCTCATACTCAATAGATTTATTTTCATGTTTAGAACAGACAATTTGATTAGATCACAAAATACTTCCCATCCTTCCTTTCAATCATTATATTTCCAACTGCTTAGGCAAGCATTGTTCAATTGTCTGCAT

Protein sequence

>Msa0121980

MEHRSTFTTCFFLFLFLVLPHISRGESDAILPSEISICFTNMNLDLKGHMLSKGPSKFFYDSNQISLVFKLHLHSENFFQSCLILNRFIFMFRTDNLIRSQNTSHPSFQSLYFQLLRQALFNCLH