AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1059110


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1059110 MtrunA17_Chr7g0235021 94.529 329 18 0 1 329 1 329 0.0 634
Msa1059110 MtrunA17_Chr4g0015051 68.085 329 104 1 1 328 1 329 3.94e-163 458
Msa1059110 MtrunA17_Chr4g0014951 67.781 329 105 1 1 328 1 329 1.22e-158 446
Msa1059110 MtrunA17_Chr4g0014971 66.869 329 108 1 1 328 1 329 1.55e-158 446
Msa1059110 MtrunA17_Chr4g0015091 66.159 328 111 0 1 328 1 328 2.70e-157 443
Msa1059110 MtrunA17_Chr4g0014931 67.477 329 106 1 1 328 1 329 7.40e-157 442
Msa1059110 MtrunA17_Chr4g0014691 65.549 328 113 0 1 328 1 328 7.01e-153 432
Msa1059110 MtrunA17_Chr4g0014541 65.244 328 114 0 1 328 1 328 8.68e-152 429
Msa1059110 MtrunA17_Chr4g0015001 65.639 227 78 0 102 328 4 230 2.75e-102 300
Msa1059110 MtrunA17_Chr8g0365421 33.233 331 184 8 6 326 76 379 5.63e-37 136
Msa1059110 MtrunA17_Chr8g0351271 30.631 333 190 8 6 326 3 306 3.44e-35 130
Msa1059110 MtrunA17_Chr8g0351481 30.631 333 190 8 6 326 3 306 5.33e-35 130
Msa1059110 MtrunA17_Chr6g0453201 34.030 335 179 12 7 328 12 317 2.58e-31 120
Msa1059110 MtrunA17_Chr6g0466321 32.024 331 187 11 7 326 20 323 7.54e-28 110
Msa1059110 MtrunA17_Chr6g0453191 33.333 309 170 10 7 306 12 293 2.79e-27 108
Msa1059110 MtrunA17_Chr7g0228011 34.226 336 175 11 6 326 8 312 4.11e-27 108
Msa1059110 MtrunA17_Chr6g0465501 31.804 327 185 11 11 326 24 323 6.72e-27 108
Msa1059110 MtrunA17_Chr2g0316731 28.116 345 215 10 7 329 27 360 8.79e-24 100
Msa1059110 MtrunA17_Chr2g0281281 25.994 327 214 9 16 327 10 323 9.53e-22 94.0
Msa1059110 MtrunA17_Chr2g0281301 28.485 330 202 13 16 327 23 336 1.35e-20 90.9
Msa1059110 MtrunA17_Chr4g0045041 29.305 331 189 14 24 326 306 619 1.88e-15 77.0
Msa1059110 MtrunA17_Chr4g0045061 28.182 330 194 14 24 326 306 619 5.72e-14 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1059110 AT4G13010.1 70.732 328 96 0 1 328 1 328 9.48e-169 472
Msa1059110 AT1G23740.1 34.535 333 181 9 4 326 76 381 4.56e-37 137
Msa1059110 AT3G15090.1 27.326 344 219 9 7 329 33 366 7.93e-24 100
Msa1059110 AT4G21580.1 28.614 332 201 11 16 328 10 324 4.96e-21 92.4
Msa1059110 AT4G21580.3 28.701 331 196 11 16 328 10 318 3.69e-20 89.7
Msa1059110 AT1G49670.1 34.359 195 109 8 19 208 301 481 1.70e-17 83.6
Msa1059110 AT4G21580.2 27.304 293 184 8 52 328 12 291 3.92e-16 77.8
Msa1059110 AT1G49670.2 30.986 213 115 8 19 208 301 504 4.88e-15 76.3
Msa1059110 AT5G61510.1 23.512 336 236 7 2 327 80 404 4.76e-12 67.0

Find 85 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTCGGATGCTGAGATTTC+TGG 0.137038 7_2:-44846963 None:intergenic
AGCCTTAGCTAGAGGAAATT+TGG 0.203726 7_2:-44847507 None:intergenic
AGGAAGTTACATGGTATATA+TGG 0.205187 7_2:-44845554 None:intergenic
AGCTGAGTTTGCTGTTATTA+AGG 0.238342 7_2:+44846917 Msa1059110:CDS
CAAAGGCACAAGTTGTTTCT+TGG 0.252604 7_2:-44847405 None:intergenic
CACTTTCTGTTTGTTCCAAT+TGG 0.275188 7_2:+44843776 Msa1059110:five_prime_UTR
TTCTGTACTTTCCAATCAAA+TGG 0.355839 7_2:-44845497 None:intergenic
TTACCGTTCGTGTTCAAGTT+AGG 0.359610 7_2:-44847317 None:intergenic
CTCTTTAATTCAACACCAAT+TGG 0.370280 7_2:-44847227 None:intergenic
GAGTTTGATTCCTATGGATT+TGG 0.372539 7_2:-44847030 None:intergenic
CCAATTGGTATCATACTTTG+TGG 0.374771 7_2:+44843791 Msa1059110:five_prime_UTR
CTAGTATAAATCCATTTGAT+TGG 0.387955 7_2:+44845486 Msa1059110:CDS
AGTATTGATGGTCATGCTAC+TGG 0.389304 7_2:+44847548 Msa1059110:CDS
AACTGAAGATCCTTACCCTT+TGG 0.395500 7_2:-44847437 None:intergenic
GTTGAATTAAAGAGTCCTTC+TGG 0.400486 7_2:+44847236 Msa1059110:CDS
GACAGGTAAGCCGGCGCATT+CGG 0.403610 7_2:-44846979 None:intergenic
TGGAGGATCCACTGCCTTGA+AGG 0.412415 7_2:+44843883 Msa1059110:CDS
CCACAAAGTATGATACCAAT+TGG 0.428345 7_2:-44843791 None:intergenic
GGTGTTAAGAAGTTCAAAAC+TGG 0.429943 7_2:+44846411 Msa1059110:CDS
ATCAAAACTTCATCTTTACT+AGG 0.431176 7_2:-44845449 None:intergenic
TCTTTACTAGGACTTGGTAT+TGG 0.449528 7_2:-44845437 None:intergenic
TTCCATGTTTCGAGCACCGC+AGG 0.455931 7_2:-44847159 None:intergenic
GCTTCTAATTCCAAAGGGTA+AGG 0.460785 7_2:+44847427 Msa1059110:CDS
GGTTGGTCTAAGAGTATTGA+TGG 0.460981 7_2:+44847536 Msa1059110:CDS
ACATGGTATATATGGGAACT+TGG 0.461377 7_2:-44845546 None:intergenic
AAGAAGTAGAAGAACCTTCA+AGG 0.461392 7_2:-44843897 None:intergenic
CTATGGATTTGGTGAGTGCT+TGG 0.465508 7_2:-44847019 None:intergenic
TCCGTCGAGTTTGATTCCTA+TGG 0.466668 7_2:-44847036 None:intergenic
CACAAGTTGTTTCTTGGAGA+AGG 0.467889 7_2:-44847399 None:intergenic
ATTGACTATAAGACACCAAT+TGG 0.468885 7_2:+44847212 Msa1059110:CDS
GAGGTCATGGAGGTTGGTAA+AGG 0.473384 7_2:+44846390 Msa1059110:CDS
CCCTTTGGAATTAGAAGCAA+AGG 0.479238 7_2:-44847422 None:intergenic
AAAACTGGTGACAAAGTTGT+AGG 0.479548 7_2:+44846426 Msa1059110:CDS
ACACTCTCTCGCTGTGGACA+TGG 0.484949 7_2:+44843820 Msa1059110:exon
GGAAGTTACATGGTATATAT+GGG 0.494611 7_2:-44845553 None:intergenic
CTTGTTGATTTGATTAAGCA+AGG 0.495471 7_2:+44847461 Msa1059110:CDS
TTATTATGGTAGAGTGGTGG+AGG 0.497869 7_2:+44846891 Msa1059110:intron
GCCTTTGCTTCTAATTCCAA+AGG 0.500098 7_2:+44847421 Msa1059110:CDS
ACTTCATCTTTACTAGGACT+TGG 0.510602 7_2:-44845443 None:intergenic
GGAATCAAACTCGACGGAAG+CGG 0.511513 7_2:+44847041 Msa1059110:CDS
CCTCTAGCTAAGGCTGAAGA+TGG 0.513384 7_2:+44847515 Msa1059110:CDS
CACCTGCGGTGCTCGAAACA+TGG 0.515898 7_2:+44847157 Msa1059110:CDS
TGATGTAGCAGGAGAGGTCA+TGG 0.520868 7_2:+44846377 Msa1059110:CDS
CAGTACTATGCCTATGGTGG+AGG 0.522680 7_2:+44843866 Msa1059110:CDS
CTCCAAATTTCCTCTAGCTA+AGG 0.534188 7_2:+44847505 Msa1059110:CDS
TGCTTGGAGAGCTGTTAGAC+CGG 0.534643 7_2:-44847003 None:intergenic
TAGAAGAACCTTCAAGGCAG+TGG 0.535806 7_2:-44843891 None:intergenic
CCTTTGCTTCTAATTCCAAA+GGG 0.536074 7_2:+44847422 Msa1059110:CDS
GCTGTTCAGTACTATGCCTA+TGG 0.546682 7_2:+44843860 Msa1059110:CDS
ATAATAGGTACTGATGTAGC+AGG 0.548468 7_2:+44846366 Msa1059110:intron
TAGCTAAGGCTGAAGATGGT+TGG 0.558067 7_2:+44847519 Msa1059110:CDS
GCAGGAGAGGTCATGGAGGT+TGG 0.561006 7_2:+44846384 Msa1059110:CDS
TGCGCCGGCTTACCTGTCGC+CGG 0.564885 7_2:+44846984 Msa1059110:CDS
CATGGTATATATGGGAACTT+GGG 0.564940 7_2:-44845545 None:intergenic
TAGACCGGCGACAGGTAAGC+CGG 0.566177 7_2:-44846988 None:intergenic
GAGCCTAACTTGAACACGAA+CGG 0.577160 7_2:+44847314 Msa1059110:CDS
CATGTTTCGAGCACCGCAGG+TGG 0.580977 7_2:-44847156 None:intergenic
GCGTCATATTTCTTACCAGA+AGG 0.583556 7_2:-44847251 None:intergenic
GTATTGATGGTCATGCTACT+GGG 0.583811 7_2:+44847549 Msa1059110:CDS
CGCAGTGGTTCATTGTGCAA+CGG 0.584166 7_2:+44847271 Msa1059110:CDS
AACTCGACGGAAGCGGTGAG+CGG 0.589334 7_2:+44847048 Msa1059110:CDS
TAACTTGAACACGAACGGTA+AGG 0.589752 7_2:+44847319 Msa1059110:CDS
CAAGCACTCACCAAATCCAT+AGG 0.589785 7_2:+44847020 Msa1059110:CDS
AGAGCTGTTAGACCGGCGAC+AGG 0.591885 7_2:-44846996 None:intergenic
GTCAACATTGAAGTAGAGCT+AGG 0.594837 7_2:-44847356 None:intergenic
GCAGTTCAATTAGCAAAGCT+AGG 0.598271 7_2:+44847116 Msa1059110:CDS
GGTATATATGGGAACTTGGG+AGG 0.598419 7_2:-44845542 None:intergenic
ATCTCAGCATCCGAATGCGC+CGG 0.598551 7_2:+44846969 Msa1059110:CDS
GGCAGTGGATCCTCCACCAT+AGG 0.599133 7_2:-44843876 None:intergenic
ACGGCAGCATCAGGTGGTGT+AGG 0.599693 7_2:+44847086 Msa1059110:CDS
GTTCAGTACTATGCCTATGG+TGG 0.599990 7_2:+44843863 Msa1059110:CDS
TCCATAGGAATCAAACTCGA+CGG 0.609909 7_2:+44847035 Msa1059110:CDS
ATTGTGCAACGGATATTGCA+TGG 0.613154 7_2:+44847282 Msa1059110:CDS
CCATCTTCAGCCTTAGCTAG+AGG 0.614800 7_2:-44847515 None:intergenic
AGGTACTGATGTAGCAGGAG+AGG 0.620397 7_2:+44846371 Msa1059110:intron
TCGGATGCTGAGATTTCTGG+TGG 0.620721 7_2:-44846960 None:intergenic
GCTAGGTAACACTCATGTAA+CGG 0.628141 7_2:+44847133 Msa1059110:CDS
TCCTACACACTCTCTCGCTG+TGG 0.635119 7_2:+44843814 Msa1059110:five_prime_UTR
TTGATCACGGCAGCATCAGG+TGG 0.637827 7_2:+44847080 Msa1059110:CDS
AAGTACAGAAACGCATGTTG+TGG 0.646892 7_2:+44845510 Msa1059110:CDS
ACTCATGTAACGGCCACCTG+CGG 0.665964 7_2:+44847143 Msa1059110:CDS
TGGTAAGAAATATGACGCAG+TGG 0.679832 7_2:+44847256 Msa1059110:CDS
GATTTCTGGTGGTATTGAAG+CGG 0.693223 7_2:-44846949 None:intergenic
TGTAGCAGGAGAGGTCATGG+AGG 0.747398 7_2:+44846380 Msa1059110:CDS
TCCACAGCGAGAGAGTGTGT+AGG 0.763197 7_2:-44843815 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAACTAGTTTTATTTTAAT+AGG + chr7_2:44844068-44844087 Msa1059110:intron 10.0%
!! AATACGTTATTTATTATAAA+GGG + chr7_2:44845833-44845852 Msa1059110:intron 10.0%
!! TATATTTGATTCTTAAGATA+TGG - chr7_2:44845235-44845254 None:intergenic 15.0%
!! AAAATATTTCAATATGATGT+AGG + chr7_2:44845292-44845311 Msa1059110:intron 15.0%
!! AAAATTAATATATAGTGAGA+GGG - chr7_2:44845582-44845601 None:intergenic 15.0%
!! TTATAATAAATAACGTATTG+TGG - chr7_2:44845832-44845851 None:intergenic 15.0%
!! CAATACGTTATTTATTATAA+AGG + chr7_2:44845832-44845851 Msa1059110:intron 15.0%
!! CAAATATTTGTAATAAACAA+GGG - chr7_2:44846316-44846335 None:intergenic 15.0%
!! TCAAATATTTGTAATAAACA+AGG - chr7_2:44846317-44846336 None:intergenic 15.0%
!!! ATTGATGAATCAATTTTTAA+GGG + chr7_2:44846497-44846516 Msa1059110:intron 15.0%
!! AATAGGAAAGAATTTAGATT+AGG + chr7_2:44844085-44844104 Msa1059110:intron 20.0%
!! ATAGGAAAGAATTTAGATTA+GGG + chr7_2:44844086-44844105 Msa1059110:intron 20.0%
!! ATTATAAACGTAACCAATTA+CGG - chr7_2:44844159-44844178 None:intergenic 20.0%
!!! AGTTCATTAGTTCTATATTA+AGG + chr7_2:44844555-44844574 Msa1059110:intron 20.0%
!!! GTTCATTAGTTCTATATTAA+GGG + chr7_2:44844556-44844575 Msa1059110:intron 20.0%
!!! GTTTTTATGATAAGCTATAT+TGG - chr7_2:44844706-44844725 None:intergenic 20.0%
!! AAAACAACTTATAGCATATA+CGG + chr7_2:44844721-44844740 Msa1059110:intron 20.0%
!!! TTGTTTAACTTAACAACTTA+GGG - chr7_2:44844953-44844972 None:intergenic 20.0%
!!! ATTGTTTAACTTAACAACTT+AGG - chr7_2:44844954-44844973 None:intergenic 20.0%
!! AAGTTGTTAAGTTAAACAAT+AGG + chr7_2:44844954-44844973 Msa1059110:intron 20.0%
!!! TCATATTGAAATATTTTGTG+AGG - chr7_2:44845289-44845308 None:intergenic 20.0%
!!! ACTACTAATTTTTTTGTCAT+TGG - chr7_2:44845358-44845377 None:intergenic 20.0%
!!! AGATGAAGTTTTGATAAAAT+TGG + chr7_2:44845457-44845476 Msa1059110:CDS 20.0%
!! CAAAATTAATATATAGTGAG+AGG - chr7_2:44845583-44845602 None:intergenic 20.0%
!!! TGTCAAAGATTTAAGATTTT+TGG + chr7_2:44845601-44845620 Msa1059110:intron 20.0%
!! ATTATACTGCATTCTATAAT+AGG + chr7_2:44846351-44846370 Msa1059110:intron 20.0%
!!! AAATTGATTCATCAATGAAA+TGG - chr7_2:44846493-44846512 None:intergenic 20.0%
!!! CATTGATGAATCAATTTTTA+AGG + chr7_2:44846496-44846515 Msa1059110:intron 20.0%
!!! TGAGTCATGAAATTTTATTA+TGG + chr7_2:44846877-44846896 Msa1059110:intron 20.0%
! ATGTATTTGTCAATGTGATT+TGG + chr7_2:44843970-44843989 Msa1059110:intron 25.0%
! TGTATTTGTCAATGTGATTT+GGG + chr7_2:44843971-44843990 Msa1059110:intron 25.0%
! TAGGAAAGAATTTAGATTAG+GGG + chr7_2:44844087-44844106 Msa1059110:intron 25.0%
! ACGTTTATAATTAGTGATCA+AGG + chr7_2:44844168-44844187 Msa1059110:intron 25.0%
! GTTCTAACTTAACATAAGAT+TGG - chr7_2:44844458-44844477 None:intergenic 25.0%
! AGTTAGAACAACATTGTTAT+AGG + chr7_2:44844469-44844488 Msa1059110:intron 25.0%
!! CATGAAGAGAATGTATATTT+TGG - chr7_2:44844509-44844528 None:intergenic 25.0%
! CAAAATATACATTCTCTTCA+TGG + chr7_2:44844507-44844526 Msa1059110:intron 25.0%
!!! ATAAGTTTTGTGAGATTGTT+TGG + chr7_2:44844614-44844633 Msa1059110:intron 25.0%
!!! TAAGTTTTGTGAGATTGTTT+GGG + chr7_2:44844615-44844634 Msa1059110:intron 25.0%
! GTGATTATGTTAACAACTTT+GGG - chr7_2:44844874-44844893 None:intergenic 25.0%
! AGTGATTATGTTAACAACTT+TGG - chr7_2:44844875-44844894 None:intergenic 25.0%
! TGATTCTTAAGATATGGATA+TGG - chr7_2:44845229-44845248 None:intergenic 25.0%
! ATCAAAACTTCATCTTTACT+AGG - chr7_2:44845452-44845471 None:intergenic 25.0%
! CTAGTATAAATCCATTTGAT+TGG + chr7_2:44845486-44845505 Msa1059110:CDS 25.0%
!!! TTGAACAAACTGCTATTTTT+CGG + chr7_2:44845901-44845920 Msa1059110:intron 25.0%
! TTAATCAAAAGCTCAATACA+TGG + chr7_2:44846064-44846083 Msa1059110:intron 25.0%
!!! GGTATTTTGAATCAGAAAAA+AGG + chr7_2:44846808-44846827 Msa1059110:intron 25.0%
!! GAAATTTTATTATGGTAGAG+TGG + chr7_2:44846885-44846904 Msa1059110:intron 25.0%
! ATGGAAATTGTAAAAAGCTT+AGG + chr7_2:44847176-44847195 Msa1059110:CDS 25.0%
! TTTAAAACCTTGATCAAGGT+GGG - chr7_2:44844291-44844310 None:intergenic 30.0%
!!! TTTTAAAACCTTGATCAAGG+TGG - chr7_2:44844292-44844311 None:intergenic 30.0%
!!! GCATTTTAAAACCTTGATCA+AGG - chr7_2:44844295-44844314 None:intergenic 30.0%
! ATTTTTGCGGAAATTACAGT+CGG + chr7_2:44844331-44844350 Msa1059110:intron 30.0%
AGAAAAAAACTCACAATCAC+CGG - chr7_2:44844433-44844452 None:intergenic 30.0%
!! GAAGAGAATGTATATTTTGG+TGG - chr7_2:44844506-44844525 None:intergenic 30.0%
!! ATTAGTTCTATATTAAGGGC+CGG + chr7_2:44844560-44844579 Msa1059110:intron 30.0%
GTTTATGTATAAGCTTGCAT+AGG - chr7_2:44844786-44844805 None:intergenic 30.0%
ATGTGAAAAATTGTATTCCC+TGG + chr7_2:44844983-44845002 Msa1059110:intron 30.0%
TGTGAAAAATTGTATTCCCT+GGG + chr7_2:44844984-44845003 Msa1059110:intron 30.0%
ACATTGGTATCAAAATTAGC+TGG + chr7_2:44845010-44845029 Msa1059110:intron 30.0%
TTCTGTACTTTCCAATCAAA+TGG - chr7_2:44845500-44845519 None:intergenic 30.0%
GGAAGTTACATGGTATATAT+GGG - chr7_2:44845556-44845575 None:intergenic 30.0%
AGGAAGTTACATGGTATATA+TGG - chr7_2:44845557-44845576 None:intergenic 30.0%
TAATATATAGTGAGAGGGAA+AGG - chr7_2:44845577-44845596 None:intergenic 30.0%
!!! TGAACAAACTGCTATTTTTC+GGG + chr7_2:44845902-44845921 Msa1059110:intron 30.0%
! TTTTGAATTAGATGCGAGAA+AGG - chr7_2:44845957-44845976 None:intergenic 30.0%
TTCATGTAGTAGAAGTTCTT+TGG + chr7_2:44845983-44846002 Msa1059110:intron 30.0%
! AAAAGTGCAATGATACAGTA+AGG - chr7_2:44846032-44846051 None:intergenic 30.0%
AAGTTTATACACCAATTGGT+GGG + chr7_2:44846242-44846261 Msa1059110:intron 30.0%
!! AATCAATTTTTAAGGGCTGT+TGG + chr7_2:44846504-44846523 Msa1059110:intron 30.0%
AAAAGAATGTTTCCGATGAA+AGG - chr7_2:44846690-44846709 None:intergenic 30.0%
! TTCATCGGAAACATTCTTTT+CGG + chr7_2:44846690-44846709 Msa1059110:intron 30.0%
! CATTCTTTTCGGAATTTTCT+CGG + chr7_2:44846701-44846720 Msa1059110:intron 30.0%
!! CTTTCAGTTTTTAAGGGTTA+CGG + chr7_2:44846737-44846756 Msa1059110:intron 30.0%
!! TTTTAAGGGTTACGGTTAAA+CGG + chr7_2:44846745-44846764 Msa1059110:intron 30.0%
!! GCTTGTTTTCTGTTTCTTTT+TGG + chr7_2:44846787-44846806 Msa1059110:intron 30.0%
! ATTTTATTATGGTAGAGTGG+TGG + chr7_2:44846888-44846907 Msa1059110:intron 30.0%
ATTGACTATAAGACACCAAT+TGG + chr7_2:44847212-44847231 Msa1059110:CDS 30.0%
CTCTTTAATTCAACACCAAT+TGG - chr7_2:44847230-44847249 None:intergenic 30.0%
!! CTTGTTGATTTGATTAAGCA+AGG + chr7_2:44847461-44847480 Msa1059110:CDS 30.0%
CACTTTCTGTTTGTTCCAAT+TGG + chr7_2:44843776-44843795 Msa1059110:five_prime_UTR 35.0%
CCACAAAGTATGATACCAAT+TGG - chr7_2:44843794-44843813 None:intergenic 35.0%
CCAATTGGTATCATACTTTG+TGG + chr7_2:44843791-44843810 Msa1059110:five_prime_UTR 35.0%
AAGAAGTAGAAGAACCTTCA+AGG - chr7_2:44843900-44843919 None:intergenic 35.0%
GAAAGAATTTAGATTAGGGG+TGG + chr7_2:44844090-44844109 Msa1059110:intron 35.0%
TAAACGTAACCAATTACGGT+TGG - chr7_2:44844155-44844174 None:intergenic 35.0%
! CGGATTAAAGGGTTCTAATA+TGG - chr7_2:44844243-44844262 None:intergenic 35.0%
!! GGTTTAGCTAACGGATTAAA+GGG - chr7_2:44844254-44844273 None:intergenic 35.0%
!! TGGTTTAGCTAACGGATTAA+AGG - chr7_2:44844255-44844274 None:intergenic 35.0%
!!! TGTGTGTGTCGTTATTTTTG+CGG + chr7_2:44844318-44844337 Msa1059110:intron 35.0%
!!! AATGTATATTTTGGTGGAGG+AGG - chr7_2:44844500-44844519 None:intergenic 35.0%
!!! GAGAATGTATATTTTGGTGG+AGG - chr7_2:44844503-44844522 None:intergenic 35.0%
GCTAATAAGACAATCCAAAC+CGG - chr7_2:44844582-44844601 None:intergenic 35.0%
AACAAGCTGTTTATCCAAAC+AGG + chr7_2:44844841-44844860 Msa1059110:intron 35.0%
AACAAGCTGTTTATCCAAAC+AGG + chr7_2:44844841-44844860 Msa1059110:intron 35.0%
TTGATACCAATGTAATCCCA+GGG - chr7_2:44845003-44845022 None:intergenic 35.0%
TTTGATACCAATGTAATCCC+AGG - chr7_2:44845004-44845023 None:intergenic 35.0%
AACTTATCACAATCAGCATG+TGG + chr7_2:44845060-44845079 Msa1059110:intron 35.0%
AGATAGACTAAGAACCATCA+CGG + chr7_2:44845188-44845207 Msa1059110:intron 35.0%
! GATATGGATATGGACTATGA+AGG - chr7_2:44845219-44845238 None:intergenic 35.0%
! TCTTTACTAGGACTTGGTAT+TGG - chr7_2:44845440-44845459 None:intergenic 35.0%
ACTTCATCTTTACTAGGACT+TGG - chr7_2:44845446-44845465 None:intergenic 35.0%
CATGGTATATATGGGAACTT+GGG - chr7_2:44845548-44845567 None:intergenic 35.0%
ACATGGTATATATGGGAACT+TGG - chr7_2:44845549-44845568 None:intergenic 35.0%
AACAGATTCTTGTCAAATGC+AGG - chr7_2:44845651-44845670 None:intergenic 35.0%
GATCACAATGTTGTCAATCT+CGG - chr7_2:44845930-44845949 None:intergenic 35.0%
CTCGCATCTAATTCAAAACA+TGG + chr7_2:44845959-44845978 Msa1059110:intron 35.0%
AAGACAGAGTTTGAATGACT+TGG - chr7_2:44846190-44846209 None:intergenic 35.0%
CTGCAAGTTTATACACCAAT+TGG + chr7_2:44846238-44846257 Msa1059110:intron 35.0%
CAAGTTTATACACCAATTGG+TGG + chr7_2:44846241-44846260 Msa1059110:intron 35.0%
!! ATAATAGGTACTGATGTAGC+AGG + chr7_2:44846366-44846385 Msa1059110:intron 35.0%
GGTGTTAAGAAGTTCAAAAC+TGG + chr7_2:44846411-44846430 Msa1059110:CDS 35.0%
AAAACTGGTGACAAAGTTGT+AGG + chr7_2:44846426-44846445 Msa1059110:CDS 35.0%
CAGTTGACAACATGAAATCA+AGG - chr7_2:44846587-44846606 None:intergenic 35.0%
ATGAAAGGACACAGGTTAAA+GGG - chr7_2:44846675-44846694 None:intergenic 35.0%
TTTAACCTGTGTCCTTTCAT+CGG + chr7_2:44846675-44846694 Msa1059110:intron 35.0%
! AGCTCAGCTTTCAGTTTTTA+AGG + chr7_2:44846730-44846749 Msa1059110:intron 35.0%
! GCTCAGCTTTCAGTTTTTAA+GGG + chr7_2:44846731-44846750 Msa1059110:intron 35.0%
!! AGCTGAGTTTGCTGTTATTA+AGG + chr7_2:44846917-44846936 Msa1059110:CDS 35.0%
GAGTTTGATTCCTATGGATT+TGG - chr7_2:44847033-44847052 None:intergenic 35.0%
!! GCGGAAAAACATTTTGATCA+CGG + chr7_2:44847067-44847086 Msa1059110:CDS 35.0%
GTTGAATTAAAGAGTCCTTC+TGG + chr7_2:44847236-44847255 Msa1059110:CDS 35.0%
CCTTTGCTTCTAATTCCAAA+GGG + chr7_2:44847422-44847441 Msa1059110:CDS 35.0%
! CCAATTACGGTTGGTACATA+TGG - chr7_2:44844146-44844165 None:intergenic 40.0%
CCATATGTACCAACCGTAAT+TGG + chr7_2:44844143-44844162 Msa1059110:intron 40.0%
! AAAGGGTTCTAATATGGCGA+GGG - chr7_2:44844237-44844256 None:intergenic 40.0%
! TAAAGGGTTCTAATATGGCG+AGG - chr7_2:44844238-44844257 None:intergenic 40.0%
AAGCCAGATGACCAAAACTA+TGG + chr7_2:44844356-44844375 Msa1059110:intron 40.0%
!!! TGACCATAGTTTTGGTCATC+TGG - chr7_2:44844362-44844381 None:intergenic 40.0%
! TGTCTCTCTGACCATAGTTT+TGG - chr7_2:44844370-44844389 None:intergenic 40.0%
TTCTATATTAAGGGCCGGTT+TGG + chr7_2:44844565-44844584 Msa1059110:intron 40.0%
CTGTTTATCCAAACAGGCTA+CGG + chr7_2:44844847-44844866 Msa1059110:intron 40.0%
TGTTTATCCAAACAGGCTAC+GGG + chr7_2:44844848-44844867 Msa1059110:intron 40.0%
TTAACAACTTAGGGCCTGTT+TGG - chr7_2:44844944-44844963 None:intergenic 40.0%
TGTATTCCCTGGGATTACAT+TGG + chr7_2:44844994-44845013 Msa1059110:intron 40.0%
AAATTTCGTCACGTGTCATC+TGG + chr7_2:44845145-44845164 Msa1059110:intron 40.0%
AAGTACAGAAACGCATGTTG+TGG + chr7_2:44845510-44845529 Msa1059110:CDS 40.0%
AGATTCTTGTCAAATGCAGG+TGG - chr7_2:44845648-44845667 None:intergenic 40.0%
TGTAATAAACAAGGGAAGCC+CGG - chr7_2:44846308-44846327 None:intergenic 40.0%
!! AATGAAATGGACTGAGTAGC+CGG - chr7_2:44846480-44846499 None:intergenic 40.0%
TAAAGGGTTGAAACTCCAAG+TGG - chr7_2:44846659-44846678 None:intergenic 40.0%
GATGAAAGGACACAGGTTAA+AGG - chr7_2:44846676-44846695 None:intergenic 40.0%
AAAACTGAAAGCTGAGCTGA+CGG - chr7_2:44846728-44846747 None:intergenic 40.0%
TTATTATGGTAGAGTGGTGG+AGG + chr7_2:44846891-44846910 Msa1059110:intron 40.0%
!! GATTTCTGGTGGTATTGAAG+CGG - chr7_2:44846952-44846971 None:intergenic 40.0%
TCCATAGGAATCAAACTCGA+CGG + chr7_2:44847035-44847054 Msa1059110:CDS 40.0%
GCAGTTCAATTAGCAAAGCT+AGG + chr7_2:44847116-44847135 Msa1059110:CDS 40.0%
GCTAGGTAACACTCATGTAA+CGG + chr7_2:44847133-44847152 Msa1059110:CDS 40.0%
AAAAAGCTTAGGAGCTGATG+AGG + chr7_2:44847187-44847206 Msa1059110:CDS 40.0%
GCGTCATATTTCTTACCAGA+AGG - chr7_2:44847254-44847273 None:intergenic 40.0%
TGGTAAGAAATATGACGCAG+TGG + chr7_2:44847256-44847275 Msa1059110:CDS 40.0%
ATTGTGCAACGGATATTGCA+TGG + chr7_2:44847282-44847301 Msa1059110:CDS 40.0%
! TTACCGTTCGTGTTCAAGTT+AGG - chr7_2:44847320-44847339 None:intergenic 40.0%
TAACTTGAACACGAACGGTA+AGG + chr7_2:44847319-44847338 Msa1059110:CDS 40.0%
GTCAACATTGAAGTAGAGCT+AGG - chr7_2:44847359-44847378 None:intergenic 40.0%
!! CACAAGTTGTTTCTTGGAGA+AGG - chr7_2:44847402-44847421 None:intergenic 40.0%
!! CAAAGGCACAAGTTGTTTCT+TGG - chr7_2:44847408-44847427 None:intergenic 40.0%
GCCTTTGCTTCTAATTCCAA+AGG + chr7_2:44847421-44847440 Msa1059110:CDS 40.0%
!! CCCTTTGGAATTAGAAGCAA+AGG - chr7_2:44847425-44847444 None:intergenic 40.0%
GCTTCTAATTCCAAAGGGTA+AGG + chr7_2:44847427-44847446 Msa1059110:CDS 40.0%
AACTGAAGATCCTTACCCTT+TGG - chr7_2:44847440-44847459 None:intergenic 40.0%
CTCCAAATTTCCTCTAGCTA+AGG + chr7_2:44847505-44847524 Msa1059110:CDS 40.0%
AGCCTTAGCTAGAGGAAATT+TGG - chr7_2:44847510-44847529 None:intergenic 40.0%
!! GGTTGGTCTAAGAGTATTGA+TGG + chr7_2:44847536-44847555 Msa1059110:CDS 40.0%
!! AGTATTGATGGTCATGCTAC+TGG + chr7_2:44847548-44847567 Msa1059110:CDS 40.0%
! GTATTGATGGTCATGCTACT+GGG + chr7_2:44847549-44847568 Msa1059110:CDS 40.0%
GCTGTTCAGTACTATGCCTA+TGG + chr7_2:44843860-44843879 Msa1059110:CDS 45.0%
GTTCAGTACTATGCCTATGG+TGG + chr7_2:44843863-44843882 Msa1059110:CDS 45.0%
TAGAAGAACCTTCAAGGCAG+TGG - chr7_2:44843894-44843913 None:intergenic 45.0%
GGCTCACTTGGTTTAGCTAA+CGG - chr7_2:44844263-44844282 None:intergenic 45.0%
!!! GACAGCTTTTAAAACCTCGC+CGG + chr7_2:44844411-44844430 Msa1059110:intron 45.0%
CTATGAAGGTGAATCCGTGA+TGG - chr7_2:44845205-44845224 None:intergenic 45.0%
GGTATATATGGGAACTTGGG+AGG - chr7_2:44845545-44845564 None:intergenic 45.0%
GAGAGGGAAAGGAAGTTACA+TGG - chr7_2:44845566-44845585 None:intergenic 45.0%
CCGGCTAAGAACTTACAAAG+GGG - chr7_2:44846461-44846480 None:intergenic 45.0%
CCCCTTTGTAAGTTCTTAGC+CGG + chr7_2:44846458-44846477 Msa1059110:intron 45.0%
GCCGGCTAAGAACTTACAAA+GGG - chr7_2:44846462-44846481 None:intergenic 45.0%
AGCCGGCTAAGAACTTACAA+AGG - chr7_2:44846463-44846482 None:intergenic 45.0%
ACTTCAGATTCCAAGCCACT+TGG + chr7_2:44846641-44846660 Msa1059110:intron 45.0%
TGTTTCCGATGAAAGGACAC+AGG - chr7_2:44846683-44846702 None:intergenic 45.0%
AAACTGAAAGCTGAGCTGAC+GGG - chr7_2:44846727-44846746 None:intergenic 45.0%
ACGGTTGAAACTCCAAGTCA+AGG + chr7_2:44846764-44846783 Msa1059110:intron 45.0%
CGGTTGAAACTCCAAGTCAA+GGG + chr7_2:44846765-44846784 Msa1059110:intron 45.0%
CAGAAAACAAGCCCTTGACT+TGG - chr7_2:44846779-44846798 None:intergenic 45.0%
CATTCGGATGCTGAGATTTC+TGG - chr7_2:44846966-44846985 None:intergenic 45.0%
!! CTATGGATTTGGTGAGTGCT+TGG - chr7_2:44847022-44847041 None:intergenic 45.0%
CAAGCACTCACCAAATCCAT+AGG + chr7_2:44847020-44847039 Msa1059110:CDS 45.0%
TCCGTCGAGTTTGATTCCTA+TGG - chr7_2:44847039-44847058 None:intergenic 45.0%
!! ATTTTGATCACGGCAGCATC+AGG + chr7_2:44847077-44847096 Msa1059110:CDS 45.0%
GAGCCTAACTTGAACACGAA+CGG + chr7_2:44847314-44847333 Msa1059110:CDS 45.0%
TAGCTAAGGCTGAAGATGGT+TGG + chr7_2:44847519-44847538 Msa1059110:CDS 45.0%
CAGTACTATGCCTATGGTGG+AGG + chr7_2:44843866-44843885 Msa1059110:CDS 50.0%
ATTAGGGGTGGCACATTTGC+TGG + chr7_2:44844102-44844121 Msa1059110:intron 50.0%
AAAACTCACAATCACCGGCG+AGG - chr7_2:44844428-44844447 None:intergenic 50.0%
GGGAACTTGGGAGGCAAAAA+TGG - chr7_2:44845536-44845555 None:intergenic 50.0%
!! AGGTACTGATGTAGCAGGAG+AGG + chr7_2:44846371-44846390 Msa1059110:intron 50.0%
TGATGTAGCAGGAGAGGTCA+TGG + chr7_2:44846377-44846396 Msa1059110:CDS 50.0%
!! GAGGTCATGGAGGTTGGTAA+AGG + chr7_2:44846390-44846409 Msa1059110:CDS 50.0%
GGTTGAAACTCCAAGTGGCT+TGG - chr7_2:44846654-44846673 None:intergenic 50.0%
! TCGGATGCTGAGATTTCTGG+TGG - chr7_2:44846963-44846982 None:intergenic 50.0%
TGCTTGGAGAGCTGTTAGAC+CGG - chr7_2:44847006-44847025 None:intergenic 50.0%
GGAATCAAACTCGACGGAAG+CGG + chr7_2:44847041-44847060 Msa1059110:CDS 50.0%
CGCAGTGGTTCATTGTGCAA+CGG + chr7_2:44847271-44847290 Msa1059110:CDS 50.0%
CCATCTTCAGCCTTAGCTAG+AGG - chr7_2:44847518-44847537 None:intergenic 50.0%
CCTCTAGCTAAGGCTGAAGA+TGG + chr7_2:44847515-44847534 Msa1059110:CDS 50.0%
TCCTACACACTCTCTCGCTG+TGG + chr7_2:44843814-44843833 Msa1059110:five_prime_UTR 55.0%
! TCCACAGCGAGAGAGTGTGT+AGG - chr7_2:44843818-44843837 None:intergenic 55.0%
ACACTCTCTCGCTGTGGACA+TGG + chr7_2:44843820-44843839 Msa1059110:exon 55.0%
TGGAGGATCCACTGCCTTGA+AGG + chr7_2:44843883-44843902 Msa1059110:CDS 55.0%
CCTTGATCAAGGTGGGTGAG+CGG - chr7_2:44844284-44844303 None:intergenic 55.0%
CTAAAGCTCCCGCATACGCA+GGG - chr7_2:44846281-44846300 None:intergenic 55.0%
!! ATGCGGGAGCTTTAGGTCAC+CGG + chr7_2:44846286-44846305 Msa1059110:intron 55.0%
TGTAGCAGGAGAGGTCATGG+AGG + chr7_2:44846380-44846399 Msa1059110:CDS 55.0%
ATCTCAGCATCCGAATGCGC+CGG + chr7_2:44846969-44846988 Msa1059110:CDS 55.0%
TTGATCACGGCAGCATCAGG+TGG + chr7_2:44847080-44847099 Msa1059110:CDS 55.0%
ACTCATGTAACGGCCACCTG+CGG + chr7_2:44847143-44847162 Msa1059110:CDS 55.0%
! TTCCATGTTTCGAGCACCGC+AGG - chr7_2:44847162-44847181 None:intergenic 55.0%
GGCAGTGGATCCTCCACCAT+AGG - chr7_2:44843879-44843898 None:intergenic 60.0%
! GGCACATTTGCTGGCGTGAG+CGG + chr7_2:44844111-44844130 Msa1059110:intron 60.0%
! CATTTGCTGGCGTGAGCGGA+AGG + chr7_2:44844115-44844134 Msa1059110:intron 60.0%
CCGCTCACCCACCTTGATCA+AGG + chr7_2:44844281-44844300 Msa1059110:intron 60.0%
CTTTGGGCCCGTAGCCTGTT+TGG - chr7_2:44844858-44844877 None:intergenic 60.0%
CATACGCAGGGTTCGGGAAG+GGG - chr7_2:44846269-44846288 None:intergenic 60.0%
GCATACGCAGGGTTCGGGAA+GGG - chr7_2:44846270-44846289 None:intergenic 60.0%
CTTCCCGAACCCTGCGTATG+CGG + chr7_2:44846269-44846288 Msa1059110:intron 60.0%
TTCCCGAACCCTGCGTATGC+GGG + chr7_2:44846270-44846289 Msa1059110:intron 60.0%
CCTAAAGCTCCCGCATACGC+AGG - chr7_2:44846282-44846301 None:intergenic 60.0%
CCTGCGTATGCGGGAGCTTT+AGG + chr7_2:44846279-44846298 Msa1059110:intron 60.0%
!! TGCGGGAGCTTTAGGTCACC+GGG + chr7_2:44846287-44846306 Msa1059110:intron 60.0%
GCAGGAGAGGTCATGGAGGT+TGG + chr7_2:44846384-44846403 Msa1059110:CDS 60.0%
GACAGGTAAGCCGGCGCATT+CGG - chr7_2:44846982-44847001 None:intergenic 60.0%
TAGACCGGCGACAGGTAAGC+CGG - chr7_2:44846991-44847010 None:intergenic 60.0%
AGAGCTGTTAGACCGGCGAC+AGG - chr7_2:44846999-44847018 None:intergenic 60.0%
AACTCGACGGAAGCGGTGAG+CGG + chr7_2:44847048-44847067 Msa1059110:CDS 60.0%
ACGGCAGCATCAGGTGGTGT+AGG + chr7_2:44847086-44847105 Msa1059110:CDS 60.0%
! CATGTTTCGAGCACCGCAGG+TGG - chr7_2:44847159-44847178 None:intergenic 60.0%
CACCTGCGGTGCTCGAAACA+TGG + chr7_2:44847157-44847176 Msa1059110:CDS 60.0%
AGGTGGGTGAGCGGCTCACT+TGG - chr7_2:44844275-44844294 None:intergenic 65.0%
CGGGAAGGGGTCCCACCAAT+TGG - chr7_2:44846256-44846275 None:intergenic 65.0%
CGCATACGCAGGGTTCGGGA+AGG - chr7_2:44846271-44846290 None:intergenic 65.0%
CTCCCGCATACGCAGGGTTC+GGG - chr7_2:44846275-44846294 None:intergenic 65.0%
GCTCCCGCATACGCAGGGTT+CGG - chr7_2:44846276-44846295 None:intergenic 65.0%
!! TGCGCCGGCTTACCTGTCGC+CGG + chr7_2:44846984-44847003 Msa1059110:CDS 70.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 44843765 44847777 44843765 ID=Msa1059110;Name=Msa1059110
chr7_2 mRNA 44843765 44847777 44843765 ID=Msa1059110-mRNA-1;Parent=Msa1059110;Name=Msa1059110-mRNA-1;_AED=0.07;_eAED=0.07;_QI=74|1|1|1|1|1|4|185|329
chr7_2 exon 44843765 44843904 44843765 ID=Msa1059110-mRNA-1:exon:8104;Parent=Msa1059110-mRNA-1
chr7_2 exon 44845425 44845566 44845425 ID=Msa1059110-mRNA-1:exon:8105;Parent=Msa1059110-mRNA-1
chr7_2 exon 44846373 44846464 44846373 ID=Msa1059110-mRNA-1:exon:8106;Parent=Msa1059110-mRNA-1
chr7_2 exon 44846903 44847777 44846903 ID=Msa1059110-mRNA-1:exon:8107;Parent=Msa1059110-mRNA-1
chr7_2 five_prime_UTR 44843765 44843838 44843765 ID=Msa1059110-mRNA-1:five_prime_utr;Parent=Msa1059110-mRNA-1
chr7_2 CDS 44843839 44843904 44843839 ID=Msa1059110-mRNA-1:cds;Parent=Msa1059110-mRNA-1
chr7_2 CDS 44845425 44845566 44845425 ID=Msa1059110-mRNA-1:cds;Parent=Msa1059110-mRNA-1
chr7_2 CDS 44846373 44846464 44846373 ID=Msa1059110-mRNA-1:cds;Parent=Msa1059110-mRNA-1
chr7_2 CDS 44846903 44847592 44846903 ID=Msa1059110-mRNA-1:cds;Parent=Msa1059110-mRNA-1
chr7_2 three_prime_UTR 44847593 44847777 44847593 ID=Msa1059110-mRNA-1:three_prime_utr;Parent=Msa1059110-mRNA-1
Gene Sequence

>Msa1059110

ATGGAAAACAAACTCATGCGTGCTGTTCAGTACTATGCCTATGGTGGAGGATCCACTGCCTTGAAGCATGTTGACGTGCCAATACCAAGTCCTAGTAAAGATGAAGTTTTGATAAAATTGGAAGCAGCTAGTATAAATCCATTTGATTGGAAAGTACAGAAACGCATGTTGTGGCCATTTTTGCCTCCCAAGTTCCCATATATACCATGTACTGATGTAGCAGGAGAGGTCATGGAGGTTGGTAAAGGTGTTAAGAAGTTCAAAACTGGTGACAAAGTTGTAGGCGTAGTCAGCCCCTTTAGTGGTGGAGGACTAGCTGAGTTTGCTGTTATTAAGGAGAGTCTCACCGCTTCAATACCACCAGAAATCTCAGCATCCGAATGCGCCGGCTTACCTGTCGCCGGTCTAACAGCTCTCCAAGCACTCACCAAATCCATAGGAATCAAACTCGACGGAAGCGGTGAGCGGAAAAACATTTTGATCACGGCAGCATCAGGTGGTGTAGGTCACTATGCAGTTCAATTAGCAAAGCTAGGTAACACTCATGTAACGGCCACCTGCGGTGCTCGAAACATGGAAATTGTAAAAAGCTTAGGAGCTGATGAGGTAATTGACTATAAGACACCAATTGGTGTTGAATTAAAGAGTCCTTCTGGTAAGAAATATGACGCAGTGGTTCATTGTGCAACGGATATTGCATGGTCAGTTTTTGAGCCTAACTTGAACACGAACGGTAAGGTTGTAGATATAACTCCTAGCTCTACTTCAATGTTGACATTTGCTCTTACTAAAATTACCTTCTCCAAGAAACAACTTGTGCCTTTGCTTCTAATTCCAAAGGGTAAGGATCTTCAGTTTCTTGTTGATTTGATTAAGCAAGGAAAGATTAAAACAGTTATAGACTCCAAATTTCCTCTAGCTAAGGCTGAAGATGGTTGGTCTAAGAGTATTGATGGTCATGCTACTGGGAAGATAATTTTTGAGTTTTAA

Protein sequence

>Msa1059110

MENKLMRAVQYYAYGGGSTALKHVDVPIPSPSKDEVLIKLEAASINPFDWKVQKRMLWPFLPPKFPYIPCTDVAGEVMEVGKGVKKFKTGDKVVGVVSPFSGGGLAEFAVIKESLTASIPPEISASECAGLPVAGLTALQALTKSIGIKLDGSGERKNILITAASGGVGHYAVQLAKLGNTHVTATCGARNMEIVKSLGADEVIDYKTPIGVELKSPSGKKYDAVVHCATDIAWSVFEPNLNTNGKVVDITPSSTSMLTFALTKITFSKKQLVPLLLIPKGKDLQFLVDLIKQGKIKTVIDSKFPLAKAEDGWSKSIDGHATGKIIFEF*