AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0167220


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0167220 MtrunA17_Chr1g0183021 92.176 409 22 3 1 405 64 466 0.0 737
Msa0167220 MtrunA17_Chr7g0262551 74.167 360 93 0 46 405 5 364 0.0 570
Msa0167220 MtrunA17_Chr7g0262571 62.025 395 150 0 10 404 24 418 0.0 517
Msa0167220 MtrunA17_Chr1g0183031 65.556 360 124 0 46 405 9 368 2.45e-176 496
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0167220 AT4G28706.1 66.479 355 119 0 50 404 46 400 0.0 511
Msa0167220 AT4G28706.3 66.479 355 119 0 50 404 48 402 0.0 511
Msa0167220 AT4G28706.2 66.573 356 118 1 50 404 48 403 0.0 509
Msa0167220 AT4G28706.4 66.573 356 118 1 50 404 48 403 1.75e-180 509
Msa0167220 AT5G43910.2 54.167 360 160 2 46 404 8 363 2.50e-139 402
Msa0167220 AT5G43910.4 54.403 318 140 2 46 362 8 321 6.31e-121 354
Msa0167220 AT5G43910.5 54.444 270 122 1 46 314 8 277 1.41e-103 309
Msa0167220 AT5G43910.1 53.650 274 126 1 46 318 8 281 1.70e-103 308
Msa0167220 AT5G43910.3 54.444 270 122 1 46 314 8 277 2.79e-103 307

Find 124 sgRNAs with CRISPR-Local

Find 377 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCCACTTCACTCACTTTA+TGG 0.132342 1_4:-49097076 Msa0167220:five_prime_UTR
TTACGTTGGGCAACTTTAAA+AGG 0.207297 1_4:+49092899 None:intergenic
ATTTACCCTCTTAGATGTTT+TGG 0.230744 1_4:-49091429 Msa0167220:three_prime_UTR
AAAATTTGTGGCTGTAACTT+TGG 0.249227 1_4:-49092878 Msa0167220:CDS
GGTGCCGGGGATGCATTTAT+TGG 0.310291 1_4:-49092062 Msa0167220:CDS
TTGACTGAATTGTTTATTGA+TGG 0.320549 1_4:-49091469 Msa0167220:three_prime_UTR
TTAACCTGCCTTGCTCGTTT+AGG 0.328379 1_4:-49096193 Msa0167220:CDS
AAACACAAGGCTCGTTTCTA+AGG 0.332845 1_4:-49096167 Msa0167220:intron
ATCAGTCACCGTCGATTTCT+TGG 0.344948 1_4:-49096613 Msa0167220:CDS
AACTCGATTCTGAAAGATCT+TGG 0.350613 1_4:+49094365 None:intergenic
CTGGAAAATCTACTGAATAA+AGG 0.358595 1_4:+49091529 None:intergenic
AAATTTGTGGCTGTAACTTT+GGG 0.365260 1_4:-49092877 Msa0167220:CDS
TTTATTGGATCTGTGATCTA+TGG 0.367712 1_4:-49092047 Msa0167220:intron
TCATCTAATATGCCCCTGCC+TGG 0.371108 1_4:+49095723 None:intergenic
GAAGGAATAGGAACGGTTAT+CGG 0.380834 1_4:-49092143 Msa0167220:CDS
ACTCGATTCTGAAAGATCTT+GGG 0.390681 1_4:+49094366 None:intergenic
GAAAGATCTTGGGGTATCAT+TGG 0.390891 1_4:+49094376 None:intergenic
ATCGAGTTTGTTATCTGCAT+TGG 0.395357 1_4:-49094350 Msa0167220:CDS
CCTTTCTGCATCAATTAAGA+TGG 0.396655 1_4:+49093538 None:intergenic
TTTCAATGAAGTTTCAATCA+TGG 0.397353 1_4:-49091334 Msa0167220:three_prime_UTR
AAGAAACCAAAACATCTAAG+AGG 0.398040 1_4:+49091423 None:intergenic
GGTGCCAAGTGCAGAGATCT+AGG 0.414691 1_4:-49091596 Msa0167220:CDS
AAGGCAGGTTAAAGCATTGC+CGG 0.419139 1_4:+49096204 None:intergenic
AATCAGAACAACCACTTTGA+AGG 0.420228 1_4:-49096556 Msa0167220:intron
GTTGCCCAACGTAAAATTTG+TGG 0.440005 1_4:-49092890 Msa0167220:CDS
CGCACAACGGTGGCGCTTTG+AGG 0.441473 1_4:+49096737 None:intergenic
GGTATCATTGGAGGATATCC+AGG 0.445056 1_4:+49094388 None:intergenic
CCCTTGTATTGGCTCAATGC+TGG 0.457091 1_4:+49091510 None:intergenic
GTGCTTATGCAGGTGGGTTG+TGG 0.457341 1_4:-49096636 Msa0167220:intron
CCAGTCAGTGGCAAAATTGA+AGG 0.461234 1_4:-49092168 Msa0167220:intron
AGGCGTGGGTCTGCGCGGTA+TGG 0.464792 1_4:+49091557 None:intergenic
CTTGTTGATACCACTGGTGC+CGG 0.467767 1_4:-49092077 Msa0167220:CDS
TCCACAATAATGTACGTAAA+CGG 0.467777 1_4:+49095188 None:intergenic
GCAGAGATTCAACATGGTTA+CGG 0.468609 1_4:+49096976 None:intergenic
AAGGAATAGGAACGGTTATC+GGG 0.482979 1_4:-49092142 Msa0167220:CDS
TTGCATTACCGATGATATGC+AGG 0.482989 1_4:+49092641 None:intergenic
TCCAGCATTGAGCCAATACA+AGG 0.484239 1_4:-49091511 Msa0167220:three_prime_UTR
TTGCGGATGACAGCCCAGGC+AGG 0.492500 1_4:-49095737 Msa0167220:CDS
ACTGAAGACATCCCTTGTAT+TGG 0.493868 1_4:+49091499 None:intergenic
TTGTTGATACCACTGGTGCC+GGG 0.498753 1_4:-49092076 Msa0167220:CDS
TGCGGATGACAGCCCAGGCA+GGG 0.505235 1_4:-49095736 Msa0167220:CDS
TTATTTGCAGGTATCTAAAG+AGG 0.508769 1_4:-49095219 Msa0167220:intron
TAGACCTAAACGAGCAAGGC+AGG 0.509005 1_4:+49096189 None:intergenic
AAATTGAAGGCAGAAGGAAT+AGG 0.514268 1_4:-49092155 Msa0167220:CDS
GTTCAAGGTGGTGGTAATGC+CGG 0.514740 1_4:-49096223 Msa0167220:CDS
GCGGATGACAGCCCAGGCAG+GGG 0.519058 1_4:-49095735 Msa0167220:CDS
CATCTAATATGCCCCTGCCT+GGG 0.522457 1_4:+49095724 None:intergenic
TTCACATTTATGTAAGGGAA+GGG 0.524893 1_4:-49091385 Msa0167220:three_prime_UTR
TAGATTGCGGATGACAGCCC+AGG 0.525196 1_4:-49095741 Msa0167220:CDS
GCAAAGGGTAGCATTGTCTC+TGG 0.526457 1_4:+49091869 None:intergenic
TTTCACATTTATGTAAGGGA+AGG 0.527093 1_4:-49091386 Msa0167220:three_prime_UTR
CTTTCTGCATCAATTAAGAT+GGG 0.529991 1_4:+49093539 None:intergenic
TCATCGCAGTAGAAATTTGA+AGG 0.531166 1_4:-49096780 Msa0167220:CDS
AGCTGAGAACATTCCACCCT+CGG 0.531491 1_4:-49092102 Msa0167220:CDS
CTCGTTTAGGTCTAAACACA+AGG 0.531596 1_4:-49096180 Msa0167220:CDS
TAATTGATGCAGAAAGGCCA+AGG 0.534906 1_4:-49093532 Msa0167220:CDS
GTCTACATCCACTTCTTCTG+TGG 0.535813 1_4:+49092716 None:intergenic
AGATCATCCAACCCTTCCCT+TGG 0.537687 1_4:+49093515 None:intergenic
CATTTATGTAAGGGAAGGGA+TGG 0.538561 1_4:-49091381 Msa0167220:three_prime_UTR
TGCTCCTAGATCTCTGCACT+TGG 0.543238 1_4:+49091592 None:intergenic
AACGGTGGCGCTTTGAGGAA+CGG 0.543705 1_4:+49096742 None:intergenic
CGAACTTGTATACATACCCC+TGG 0.546807 1_4:-49094406 Msa0167220:CDS
TCTACTGAATAAAGGACGCT+AGG 0.547805 1_4:+49091537 None:intergenic
ACATACCACATTAGCAGCAA+AGG 0.549212 1_4:+49091853 None:intergenic
AGTTTGTTATCTGCATTGGA+TGG 0.549990 1_4:-49094346 Msa0167220:CDS
CTCGATTCTGAAAGATCTTG+GGG 0.550007 1_4:+49094367 None:intergenic
AGTGGATGTAGACAACTTAG+TGG 0.550188 1_4:-49092706 Msa0167220:CDS
GCTGTAACTTTGGGAAAAGA+TGG 0.551573 1_4:-49092868 Msa0167220:CDS
TCGGAGCTTGTTGATACCAC+TGG 0.552639 1_4:-49092083 Msa0167220:CDS
ATGAATGAATGAGTGGTGAT+TGG 0.555435 1_4:+49097053 None:intergenic
ACCGTTTACGTACATTATTG+TGG 0.557011 1_4:-49095189 Msa0167220:CDS
GGAATCGCTGGAGTTGAGAA+AGG 0.557020 1_4:-49092685 Msa0167220:CDS
CCATCTTAATTGATGCAGAA+AGG 0.560154 1_4:-49093538 Msa0167220:CDS
CATACCACATTAGCAGCAAA+GGG 0.560550 1_4:+49091854 None:intergenic
CTGCTCGAGAGAAGTGTCAA+TGG 0.560870 1_4:-49092838 Msa0167220:intron
TGCTCTAGTTGTTGCCCATG+AGG 0.563399 1_4:-49094284 Msa0167220:intron
GCTACCCTTTGCTGCTAATG+TGG 0.565502 1_4:-49091858 Msa0167220:intron
ACATCCACTTCTTCTGTGGT+AGG 0.565690 1_4:+49092720 None:intergenic
AGATCCAATAAATGCATCCC+CGG 0.570608 1_4:+49092058 None:intergenic
AAGTCCTACCACAGAAGAAG+TGG 0.571923 1_4:-49092724 Msa0167220:CDS
AGAAACCAAAACATCTAAGA+GGG 0.573537 1_4:+49091424 None:intergenic
TGAATAAAGGACGCTAGGCG+TGG 0.574504 1_4:+49091542 None:intergenic
GTGGCAAAATTGAAGGCAGA+AGG 0.575754 1_4:-49092161 Msa0167220:CDS
AGACAACTTAGTGGAATCGC+TGG 0.576698 1_4:-49092697 Msa0167220:CDS
TTGTTTAATTTCAGTTAACA+AGG 0.576890 1_4:-49096805 Msa0167220:intron
ATGCAGAAAGGCCAAGGGAA+GGG 0.579374 1_4:-49093526 Msa0167220:CDS
AGATCTTGGGGTATCATTGG+AGG 0.580008 1_4:+49094379 None:intergenic
AGAAAGGCCAAGGGAAGGGT+TGG 0.584621 1_4:-49093522 Msa0167220:CDS
AAATGCATCCCCGGCACCAG+TGG 0.595424 1_4:+49092067 None:intergenic
AATTCCAACCTGCATATCAT+CGG 0.597038 1_4:-49092649 Msa0167220:intron
TATATAGGTGATAACCTCAT+GGG 0.599137 1_4:+49094270 None:intergenic
ATACAAGGGATGTCTTCAGT+GGG 0.604364 1_4:-49091496 Msa0167220:three_prime_UTR
TGTTTAGACCTAAACGAGCA+AGG 0.611501 1_4:+49096185 None:intergenic
AATACAAGGGATGTCTTCAG+TGG 0.612334 1_4:-49091497 Msa0167220:three_prime_UTR
TATTTGCAGGTATCTAAAGA+GGG 0.612549 1_4:-49095218 Msa0167220:intron
GAATAAAGGACGCTAGGCGT+GGG 0.613508 1_4:+49091543 None:intergenic
ATTACCGATGATATGCAGGT+TGG 0.615097 1_4:+49092645 None:intergenic
GATGCAGAAAGGCCAAGGGA+AGG 0.616991 1_4:-49093527 Msa0167220:CDS
TTAGATGAGCTACAGACTGA+TGG 0.621642 1_4:-49095708 Msa0167220:CDS
TTGCTTACAGGCATGGACAG+AGG 0.621943 1_4:-49092953 Msa0167220:intron
ATGCTCAGCTAAATTTCCAA+AGG 0.623139 1_4:-49093468 Msa0167220:intron
GTGGTATCAACAAGCTCCGA+GGG 0.625631 1_4:+49092086 None:intergenic
GGTTGAAATGAATGAATGAG+TGG 0.638659 1_4:+49097046 None:intergenic
GAGAGGGAAACGCACAACGG+TGG 0.647307 1_4:+49096727 None:intergenic
AAAGGAAGCAACCTTCAAAG+TGG 0.648978 1_4:+49096545 None:intergenic
GAAGGCAGAAGGAATAGGAA+CGG 0.653495 1_4:-49092150 Msa0167220:CDS
GTATCAACAAGCTCCGAGGG+TGG 0.653660 1_4:+49092089 None:intergenic
AGGATAGAAACAAGTGCTCG+CGG 0.655158 1_4:+49092919 None:intergenic
GTATCATTGGAGGATATCCA+GGG 0.655895 1_4:+49094389 None:intergenic
TGTTGATACCACTGGTGCCG+GGG 0.657221 1_4:-49092075 Msa0167220:CDS
TGGCTTAGGATAAGCAGCAA+CGG 0.657813 1_4:+49096587 None:intergenic
TGAGCTACAGACTGATGGCG+TGG 0.660123 1_4:-49095703 Msa0167220:CDS
ACGCTAGGCGTGGGTCTGCG+CGG 0.665905 1_4:+49091552 None:intergenic
AATTGATGCAGAAAGGCCAA+GGG 0.667892 1_4:-49093531 Msa0167220:CDS
CCAGCATTGAGCCAATACAA+GGG 0.669727 1_4:-49091510 Msa0167220:three_prime_UTR
TGGCCATAAAGTGAGTGAAG+TGG 0.672106 1_4:+49097073 None:intergenic
AACGGTAGCCAAGAAATCGA+CGG 0.675256 1_4:+49096605 None:intergenic
AAAAGTGCAGAGATTCAACA+TGG 0.691552 1_4:+49096970 None:intergenic
AGTGGTATCAACAAGCTCCG+AGG 0.709683 1_4:+49092085 None:intergenic
GGTGGCGCTTTGAGGAACGG+AGG 0.717893 1_4:+49096745 None:intergenic
TACAAGGGATGTCTTCAGTG+GGG 0.738153 1_4:-49091495 Msa0167220:three_prime_UTR
TATCATTGGAGGATATCCAG+GGG 0.762329 1_4:+49094390 None:intergenic
AGAGATCTAGGAGCACGAAG+CGG 0.771967 1_4:-49091584 Msa0167220:CDS
GTTATCGGGAAACTATACGT+CGG 0.785477 1_4:-49092128 Msa0167220:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATGTAAAATGTTTATATT+TGG - chr1_4:49091877-49091896 Msa0167220:CDS 10.0%
!!! AATTATTTAGTTTTAATTTC+TGG - chr1_4:49092216-49092235 Msa0167220:intron 10.0%
!!! TTAATACTTTTTTTTTTTTG+TGG - chr1_4:49093067-49093086 Msa0167220:intron 10.0%
!! ATCTACAATTAAAAAAAATT+TGG + chr1_4:49095247-49095266 None:intergenic 10.0%
!!! TAATTTTTTCAGTAAAAAAA+TGG + chr1_4:49095280-49095299 None:intergenic 10.0%
!!! AAATTTGATTTTTGTGTTTT+GGG + chr1_4:49091299-49091318 None:intergenic 15.0%
!! ATAAAAAAAACCTCAAAATT+TGG + chr1_4:49091643-49091662 None:intergenic 15.0%
!!! TAATTAATTTTAATTCTCGA+TGG + chr1_4:49093010-49093029 None:intergenic 15.0%
!! GAGAATTAAAATTAATTAGT+GGG - chr1_4:49093012-49093031 Msa0167220:intron 15.0%
!! AGAATTAAAATTAATTAGTG+GGG - chr1_4:49093013-49093032 Msa0167220:intron 15.0%
!! AAGTATTAATAAAATAGTAG+AGG + chr1_4:49093056-49093075 None:intergenic 15.0%
!!! TTTTTGAGGTTTAAAAAAAA+AGG + chr1_4:49094589-49094608 None:intergenic 15.0%
!! GTAAGAAATATATAATACTA+TGG - chr1_4:49094905-49094924 Msa0167220:intron 15.0%
!!! TTTGTTATATTTTTCTCTTA+TGG - chr1_4:49096309-49096328 Msa0167220:intron 15.0%
!!! GAAATTTGATTTTTGTGTTT+TGG + chr1_4:49091300-49091319 None:intergenic 20.0%
!!! TTGTTTAATTTCAGTTAACA+AGG - chr1_4:49091516-49091535 Msa0167220:three_prime_UTR 20.0%
!!! TATTATGCATTGTAATTTTC+AGG - chr1_4:49092076-49092095 Msa0167220:CDS 20.0%
!!! AAATTTGGTTTATTGCATTT+TGG - chr1_4:49092715-49092734 Msa0167220:CDS 20.0%
!!! ATATTTAATTGATAACCCTT+GGG + chr1_4:49092932-49092951 None:intergenic 20.0%
!! AATCGAAATGTAGTTAATTA+AGG - chr1_4:49092961-49092980 Msa0167220:intron 20.0%
!! CGAGAATTAAAATTAATTAG+TGG - chr1_4:49093011-49093030 Msa0167220:intron 20.0%
!! GAATTGCAAGTAAAATATAT+AGG + chr1_4:49094069-49094088 None:intergenic 20.0%
!! ATATTAGCATTAATCAAAGT+TGG + chr1_4:49094190-49094209 None:intergenic 20.0%
!! AAGGTAATAACATGAAAAAT+TGG + chr1_4:49094383-49094402 None:intergenic 20.0%
!!! TTTTTGCATAATAATCTCAA+GGG + chr1_4:49094619-49094638 None:intergenic 20.0%
!!! TTATTTTCTTTTGCTTGTAA+AGG - chr1_4:49094668-49094687 Msa0167220:intron 20.0%
!!! GAAAATACTATAACTTTTTG+TGG - chr1_4:49095067-49095086 Msa0167220:intron 20.0%
!!! ACAACTTAACATATATTTTG+GGG + chr1_4:49095098-49095117 None:intergenic 20.0%
!!! CACAACTTAACATATATTTT+GGG + chr1_4:49095099-49095118 None:intergenic 20.0%
!! ATTAAAAAAAATTTGGCAAC+CGG + chr1_4:49095240-49095259 None:intergenic 20.0%
!!! TTTAATTATTTGACCTTTTC+TGG - chr1_4:49095570-49095589 Msa0167220:intron 20.0%
!! ATATATTAAAACAGAGAGAA+TGG + chr1_4:49095842-49095861 None:intergenic 20.0%
!! AATTTATGTATTGAACCTAT+TGG - chr1_4:49096649-49096668 Msa0167220:intron 20.0%
!!! AAAAAGCTTATGCATTTTAA+TGG - chr1_4:49096690-49096709 Msa0167220:intron 20.0%
!!! AAAAGCTTATGCATTTTAAT+GGG - chr1_4:49096691-49096710 Msa0167220:intron 20.0%
!!! TGATTTTTCACATTTATGTA+AGG - chr1_4:49096930-49096949 Msa0167220:CDS 20.0%
!!! GATTTTTCACATTTATGTAA+GGG - chr1_4:49096931-49096950 Msa0167220:CDS 20.0%
!! GAAAGTAAAAATTATAAGCA+GGG + chr1_4:49096971-49096990 None:intergenic 20.0%
!! TGAAAGTAAAAATTATAAGC+AGG + chr1_4:49096972-49096991 None:intergenic 20.0%
!! AGAGAACAAAAAATTTGAAT+GGG - chr1_4:49097059-49097078 Msa0167220:five_prime_UTR 20.0%
! AAAAAAACCTCAAAATTTGG+CGG + chr1_4:49091640-49091659 None:intergenic 25.0%
! TTTATAAGCACTTAAACAAG+TGG + chr1_4:49092280-49092299 None:intergenic 25.0%
! AATATGCTGAAAACAACTTA+TGG - chr1_4:49092403-49092422 Msa0167220:intron 25.0%
!! TACATCTTTTATTGTGGTAA+TGG - chr1_4:49092642-49092661 Msa0167220:intron 25.0%
! AAATTATACTTCGAATCAGT+TGG + chr1_4:49092909-49092928 None:intergenic 25.0%
!! CATATTTAATTGATAACCCT+TGG + chr1_4:49092933-49092952 None:intergenic 25.0%
!!! AATGGTCATTTTCTTACATA+TGG - chr1_4:49093167-49093186 Msa0167220:intron 25.0%
! ACTTGAATCATTCTAAGTTA+AGG - chr1_4:49093486-49093505 Msa0167220:CDS 25.0%
! CTTGAATCATTCTAAGTTAA+GGG - chr1_4:49093487-49093506 Msa0167220:CDS 25.0%
! TTGAATCATTCTAAGTTAAG+GGG - chr1_4:49093488-49093507 Msa0167220:CDS 25.0%
!!! TATAAAGTGTTGTCAAACAA+AGG + chr1_4:49093636-49093655 None:intergenic 25.0%
! ACTCATATAGGATATATTGT+AGG + chr1_4:49093800-49093819 None:intergenic 25.0%
!!! CAAGCATTGTATATTTTGAT+GGG - chr1_4:49094000-49094019 Msa0167220:intron 25.0%
! ATTCTGATGTTAACTATAAG+AGG - chr1_4:49094085-49094104 Msa0167220:intron 25.0%
! ATTTAGAAGTCAAAACATCA+AGG - chr1_4:49094116-49094135 Msa0167220:intron 25.0%
! TACTATTATACAGTACTTAG+TGG - chr1_4:49094160-49094179 Msa0167220:intron 25.0%
! AAGAAAAAGAACGAATGTAA+GGG + chr1_4:49094412-49094431 None:intergenic 25.0%
! AAAGAAAAAGAACGAATGTA+AGG + chr1_4:49094413-49094432 None:intergenic 25.0%
! ATCATGTAACAGTTTCTAAT+AGG + chr1_4:49094481-49094500 None:intergenic 25.0%
!! TTCTAGGAAATTGAAATTAC+AGG - chr1_4:49094537-49094556 Msa0167220:intron 25.0%
! TCTAGGAAATTGAAATTACA+GGG - chr1_4:49094538-49094557 Msa0167220:intron 25.0%
!! GTTTTTGCATAATAATCTCA+AGG + chr1_4:49094620-49094639 None:intergenic 25.0%
! AAATAAAAGAGCTTAACAGA+AGG - chr1_4:49094708-49094727 Msa0167220:intron 25.0%
!! CAACATAATCAGCTAATTTT+AGG + chr1_4:49094832-49094851 None:intergenic 25.0%
!! GCACAACTTAACATATATTT+TGG + chr1_4:49095100-49095119 None:intergenic 25.0%
!! AAGCTATATTCTTTTTGTTG+TGG - chr1_4:49095142-49095161 Msa0167220:intron 25.0%
!!! AGCTATATTCTTTTTGTTGT+GGG - chr1_4:49095143-49095162 Msa0167220:intron 25.0%
!! GGAAAGATATATTTTTCTGA+AGG - chr1_4:49095164-49095183 Msa0167220:intron 25.0%
!!! AAGATATATTTTTCTGAAGG+TGG - chr1_4:49095167-49095186 Msa0167220:intron 25.0%
!!! AGATATATTTTTCTGAAGGT+GGG - chr1_4:49095168-49095187 Msa0167220:intron 25.0%
!!! ATTATTTTTACTCTTCTCTG+TGG - chr1_4:49095296-49095315 Msa0167220:intron 25.0%
!!! TTATTTTTACTCTTCTCTGT+GGG - chr1_4:49095297-49095316 Msa0167220:intron 25.0%
! GTATGTACAGATATGATTAT+GGG - chr1_4:49095505-49095524 Msa0167220:intron 25.0%
! AAACCTGTTTACATTAAAAG+CGG + chr1_4:49095552-49095571 None:intergenic 25.0%
! AACACTGTATTTGTCAAAAA+AGG + chr1_4:49095895-49095914 None:intergenic 25.0%
!! AGCTTGCATAATTGATATTT+TGG + chr1_4:49095962-49095981 None:intergenic 25.0%
! CATCATTATACACTAACATA+TGG + chr1_4:49096537-49096556 None:intergenic 25.0%
!!! AAAGCTTATGCATTTTAATG+GGG - chr1_4:49096692-49096711 Msa0167220:intron 25.0%
! TTGACTGAATTGTTTATTGA+TGG - chr1_4:49096852-49096871 Msa0167220:intron 25.0%
! TTTCAATGAAGTTTCAATCA+TGG - chr1_4:49096987-49097006 Msa0167220:exon 25.0%
!!! CATTCAAATTTTTTGTTCTC+TGG + chr1_4:49097060-49097079 None:intergenic 25.0%
! CAGAGAACAAAAAATTTGAA+TGG - chr1_4:49097058-49097077 Msa0167220:five_prime_UTR 25.0%
AAAAAACCTCAAAATTTGGC+GGG + chr1_4:49091639-49091658 None:intergenic 30.0%
! GTTGTTCTGATTTTATCATC+TGG + chr1_4:49091757-49091776 None:intergenic 30.0%
AAGCTAGTATAGTGCATATT+TGG - chr1_4:49091818-49091837 Msa0167220:intron 30.0%
!!! CATTGTAATTTTCAGGTTCA+AGG - chr1_4:49092083-49092102 Msa0167220:CDS 30.0%
TTAAATAAGCAATGTCGAGA+GGG + chr1_4:49092198-49092217 None:intergenic 30.0%
ATTAAATAAGCAATGTCGAG+AGG + chr1_4:49092199-49092218 None:intergenic 30.0%
!! CTGGAAGTATTTAACAGTTT+AGG - chr1_4:49092235-49092254 Msa0167220:intron 30.0%
CACTTAAACAAGTGGTTTAT+CGG + chr1_4:49092272-49092291 None:intergenic 30.0%
! ACTCTTTTCATAGACTATTG+TGG - chr1_4:49092367-49092386 Msa0167220:intron 30.0%
ACAATGGTTTCAAAAAACTC+AGG + chr1_4:49092524-49092543 None:intergenic 30.0%
! GTGCATTTTACTAATGTGTT+TGG - chr1_4:49092550-49092569 Msa0167220:intron 30.0%
TCTTCATGAAGCTTGAAATT+TGG - chr1_4:49092700-49092719 Msa0167220:CDS 30.0%
TATTGTTGCCCATAACTAAA+AGG + chr1_4:49092774-49092793 None:intergenic 30.0%
AAAATACTGAGATTTGAGAG+TGG + chr1_4:49092872-49092891 None:intergenic 30.0%
ATTCGAAGTATAATTTCCCA+AGG - chr1_4:49092913-49092932 Msa0167220:CDS 30.0%
TTCGAAGTATAATTTCCCAA+GGG - chr1_4:49092914-49092933 Msa0167220:CDS 30.0%
! TAACTACATTTCGATTTGTC+TGG + chr1_4:49092957-49092976 None:intergenic 30.0%
AAAATTAATTAGTGGGGTTC+TGG - chr1_4:49093019-49093038 Msa0167220:intron 30.0%
AATAAAATAGTAGAGGCCAT+TGG + chr1_4:49093049-49093068 None:intergenic 30.0%
TTAGATACCTGCAAATAACA+GGG + chr1_4:49093100-49093119 None:intergenic 30.0%
TTTAGATACCTGCAAATAAC+AGG + chr1_4:49093101-49093120 None:intergenic 30.0%
TTATTTGCAGGTATCTAAAG+AGG - chr1_4:49093102-49093121 Msa0167220:intron 30.0%
TATTTGCAGGTATCTAAAGA+GGG - chr1_4:49093103-49093122 Msa0167220:intron 30.0%
TCCACAATAATGTACGTAAA+CGG + chr1_4:49093136-49093155 None:intergenic 30.0%
TAATTCAGTGTTGTCAATTG+TGG - chr1_4:49093548-49093567 Msa0167220:CDS 30.0%
CTTTATACAATCGCATATCA+CGG - chr1_4:49093649-49093668 Msa0167220:intron 30.0%
!! GCAAGCATTGTATATTTTGA+TGG - chr1_4:49093999-49094018 Msa0167220:intron 30.0%
TATATAGGTGATAACCTCAT+GGG + chr1_4:49094054-49094073 None:intergenic 30.0%
ATATATAGGTGATAACCTCA+TGG + chr1_4:49094055-49094074 None:intergenic 30.0%
AAATTCTCCACCAAAAACAT+AGG + chr1_4:49094512-49094531 None:intergenic 30.0%
GTGGAGAATTTCAAAATTCT+AGG - chr1_4:49094521-49094540 Msa0167220:intron 30.0%
AAAGGATTCATAAAACAACC+TGG + chr1_4:49094571-49094590 None:intergenic 30.0%
! TCAAGGGAATGTAATTTTTG+AGG + chr1_4:49094603-49094622 None:intergenic 30.0%
CTTTCTGCATCAATTAAGAT+GGG + chr1_4:49094785-49094804 None:intergenic 30.0%
CATTTATGCACATGTAAACA+AGG + chr1_4:49094943-49094962 None:intergenic 30.0%
!!! ACTTTTTTGTTCTATAAGCC+AGG - chr1_4:49094984-49095003 Msa0167220:intron 30.0%
TAAATAGTACATTTACTGCC+TGG + chr1_4:49095005-49095024 None:intergenic 30.0%
!!! TTAACATATATTTTGGGGCA+AGG + chr1_4:49095093-49095112 None:intergenic 30.0%
!! TATTTTTACTCTTCTCTGTG+GGG - chr1_4:49095298-49095317 Msa0167220:intron 30.0%
!! TGCATTTGATGATGCTTAAA+AGG + chr1_4:49095331-49095350 None:intergenic 30.0%
AAAATTTGTGGCTGTAACTT+TGG - chr1_4:49095443-49095462 Msa0167220:intron 30.0%
AAATTTGTGGCTGTAACTTT+GGG - chr1_4:49095444-49095463 Msa0167220:intron 30.0%
GGTATGTACAGATATGATTA+TGG - chr1_4:49095504-49095523 Msa0167220:intron 30.0%
TTTATTGGATCTGTGATCTA+TGG - chr1_4:49096274-49096293 Msa0167220:intron 30.0%
TTTCTCTTATGGTCTTCAAT+AGG - chr1_4:49096320-49096339 Msa0167220:intron 30.0%
AGTGTAGAATATATAGCTGA+GGG + chr1_4:49096513-49096532 None:intergenic 30.0%
! ATAAGTTTGTTTGAGGTTAG+AGG + chr1_4:49096575-49096594 None:intergenic 30.0%
CTGGAAAATCTACTGAATAA+AGG + chr1_4:49096795-49096814 None:intergenic 30.0%
! ATTTACCCTCTTAGATGTTT+TGG - chr1_4:49096892-49096911 Msa0167220:intron 30.0%
AGAAACCAAAACATCTAAGA+GGG + chr1_4:49096900-49096919 None:intergenic 30.0%
AAGAAACCAAAACATCTAAG+AGG + chr1_4:49096901-49096920 None:intergenic 30.0%
TTTCACATTTATGTAAGGGA+AGG - chr1_4:49096935-49096954 Msa0167220:CDS 30.0%
TTCACATTTATGTAAGGGAA+GGG - chr1_4:49096936-49096955 Msa0167220:CDS 30.0%
ATGAATGAATGAGTGGTGAT+TGG + chr1_4:49091271-49091290 None:intergenic 35.0%
GGTTGAAATGAATGAATGAG+TGG + chr1_4:49091278-49091297 None:intergenic 35.0%
! AAAAGTGCAGAGATTCAACA+TGG + chr1_4:49091354-49091373 None:intergenic 35.0%
TCATCGCAGTAGAAATTTGA+AGG - chr1_4:49091541-49091560 Msa0167220:CDS 35.0%
GAAAGAAAGAGAGAAAGAGA+GGG + chr1_4:49091613-49091632 None:intergenic 35.0%
TGAAAGAAAGAGAGAAAGAG+AGG + chr1_4:49091614-49091633 None:intergenic 35.0%
!! CTGATTTTATCATCTGGCTT+AGG + chr1_4:49091751-49091770 None:intergenic 35.0%
AATCAGAACAACCACTTTGA+AGG - chr1_4:49091765-49091784 Msa0167220:intron 35.0%
!! AAGCCACTCTTTAAAGCATT+TGG + chr1_4:49092055-49092074 None:intergenic 35.0%
!!! TGTAATTTTCAGGTTCAAGG+TGG - chr1_4:49092086-49092105 Msa0167220:CDS 35.0%
! AGATACTTGTGAGACTGTTT+TGG + chr1_4:49092458-49092477 None:intergenic 35.0%
! TCAAAAAACTCAGGCTTGTT+TGG + chr1_4:49092515-49092534 None:intergenic 35.0%
TAAAATGCACGCATACACAA+TGG + chr1_4:49092540-49092559 None:intergenic 35.0%
GTTTGGTACTCATTAGATTG+CGG - chr1_4:49092567-49092586 Msa0167220:intron 35.0%
! CGTGGATACATCTTTTATTG+TGG - chr1_4:49092636-49092655 Msa0167220:intron 35.0%
!! TTGCTCATGCCTTTTAGTTA+TGG - chr1_4:49092762-49092781 Msa0167220:intron 35.0%
!! TGCTCATGCCTTTTAGTTAT+GGG - chr1_4:49092763-49092782 Msa0167220:intron 35.0%
TATACTTCGAATCAGTTGGT+GGG + chr1_4:49092905-49092924 None:intergenic 35.0%
TTATACTTCGAATCAGTTGG+TGG + chr1_4:49092906-49092925 None:intergenic 35.0%
ACCGTTTACGTACATTATTG+TGG - chr1_4:49093132-49093151 Msa0167220:intron 35.0%
TTGTGGACAATGAAACGTAA+TGG - chr1_4:49093149-49093168 Msa0167220:intron 35.0%
TACTATCTTGACTTCTTCTC+TGG - chr1_4:49093193-49093212 Msa0167220:intron 35.0%
TCTCTGGATATATTCATGAG+AGG - chr1_4:49093209-49093228 Msa0167220:intron 35.0%
CTCTGGATATATTCATGAGA+GGG - chr1_4:49093210-49093229 Msa0167220:intron 35.0%
TCTGGATATATTCATGAGAG+GGG - chr1_4:49093211-49093230 Msa0167220:intron 35.0%
TGTGCAAAGATGATAAAGAC+AGG + chr1_4:49093296-49093315 None:intergenic 35.0%
AATGCGATGCATAAATTGGA+TGG - chr1_4:49093348-49093367 Msa0167220:intron 35.0%
TGAAGATCTTCAAGCATTTC+TGG - chr1_4:49093434-49093453 Msa0167220:intron 35.0%
ACATCAGTGTTGTCAAATAG+TGG + chr1_4:49093722-49093741 None:intergenic 35.0%
!! GAGACTAATTGTTCAAGTTG+TGG - chr1_4:49093748-49093767 Msa0167220:intron 35.0%
AAGAAGGGTCATACTCATAT+AGG + chr1_4:49093812-49093831 None:intergenic 35.0%
AGTAGCTAGAATGAGTCAAA+GGG + chr1_4:49093881-49093900 None:intergenic 35.0%
AAGTAGCTAGAATGAGTCAA+AGG + chr1_4:49093882-49093901 None:intergenic 35.0%
!!! CTCATTCTAGCTACTTTTTC+AGG - chr1_4:49093886-49093905 Msa0167220:intron 35.0%
! ACTCGATTCTGAAAGATCTT+GGG + chr1_4:49093958-49093977 None:intergenic 35.0%
! AACTCGATTCTGAAAGATCT+TGG + chr1_4:49093959-49093978 None:intergenic 35.0%
!! ATCGAGTTTGTTATCTGCAT+TGG - chr1_4:49093971-49093990 Msa0167220:intron 35.0%
!! AGTTTGTTATCTGCATTGGA+TGG - chr1_4:49093975-49093994 Msa0167220:intron 35.0%
ACTATCTCATGTTCAACCAT+TGG + chr1_4:49094251-49094270 None:intergenic 35.0%
GCATTTGCAATATCCACTAT+GGG + chr1_4:49094341-49094360 None:intergenic 35.0%
TGCATTTGCAATATCCACTA+TGG + chr1_4:49094342-49094361 None:intergenic 35.0%
ACGAATGTAAGGGTGAAAAA+AGG + chr1_4:49094402-49094421 None:intergenic 35.0%
! ATTTCGCTTGCCTATGTTTT+TGG - chr1_4:49094499-49094518 Msa0167220:intron 35.0%
GATTCATAAAACAACCTGGT+TGG + chr1_4:49094567-49094586 None:intergenic 35.0%
! CTTTTGCTTGTAAAGGAGAT+TGG - chr1_4:49094675-49094694 Msa0167220:intron 35.0%
! TTGTAAAGGAGATTGGTAGT+GGG - chr1_4:49094682-49094701 Msa0167220:intron 35.0%
! ATCTTGTATTTTTCCAGTGC+AGG - chr1_4:49094742-49094761 Msa0167220:intron 35.0%
CCTTTCTGCATCAATTAAGA+TGG + chr1_4:49094786-49094805 None:intergenic 35.0%
CCATCTTAATTGATGCAGAA+AGG - chr1_4:49094783-49094802 Msa0167220:intron 35.0%
ATGCTCAGCTAAATTTCCAA+AGG - chr1_4:49094853-49094872 Msa0167220:intron 35.0%
TAAAACAACGCATTCACCTT+TGG + chr1_4:49094872-49094891 None:intergenic 35.0%
ATATGCTGTCTTGAATGACT+TGG - chr1_4:49095036-49095055 Msa0167220:intron 35.0%
!!! TTTTTTACTGCTGACACCAA+TGG - chr1_4:49095205-49095224 Msa0167220:CDS 35.0%
AAAATTTGGCAACCGGAAAA+GGG + chr1_4:49095233-49095252 None:intergenic 35.0%
AAAAATTTGGCAACCGGAAA+AGG + chr1_4:49095234-49095253 None:intergenic 35.0%
GATAACCTTTCTTTGCTTAC+AGG - chr1_4:49095356-49095375 Msa0167220:intron 35.0%
TTACGTTGGGCAACTTTAAA+AGG + chr1_4:49095425-49095444 None:intergenic 35.0%
! ACAGCCACAAATTTTACGTT+GGG + chr1_4:49095438-49095457 None:intergenic 35.0%
! TACAGCCACAAATTTTACGT+TGG + chr1_4:49095439-49095458 None:intergenic 35.0%
!! CATCCGCTTTTAATGTAAAC+AGG - chr1_4:49095546-49095565 Msa0167220:intron 35.0%
AATTCCAACCTGCATATCAT+CGG - chr1_4:49095672-49095691 Msa0167220:intron 35.0%
TTAAAACAGAGAGAATGGCA+GGG + chr1_4:49095837-49095856 None:intergenic 35.0%
ATTAAAACAGAGAGAATGGC+AGG + chr1_4:49095838-49095857 None:intergenic 35.0%
AAATTGAAGGCAGAAGGAAT+AGG - chr1_4:49096166-49096185 Msa0167220:intron 35.0%
TATGAAATATGTTCTGTGCC+TGG - chr1_4:49096398-49096417 Msa0167220:intron 35.0%
CAAATAGCTGAAAACAAACC+AGG + chr1_4:49096419-49096438 None:intergenic 35.0%
CTGCTAATGTGGTATGTTAA+TGG - chr1_4:49096474-49096493 Msa0167220:intron 35.0%
CAGTGTAGAATATATAGCTG+AGG + chr1_4:49096514-49096533 None:intergenic 35.0%
! TGCTTGGATAAGTTTGTTTG+AGG + chr1_4:49096582-49096601 None:intergenic 35.0%
! TAGGATACATTTGAAGTGCT+TGG + chr1_4:49096598-49096617 None:intergenic 35.0%
!! TGCATTTTAATGGGGATTTC+AGG - chr1_4:49096700-49096719 Msa0167220:intron 35.0%
GATCCACTTCACTCACTTTA+TGG - chr1_4:49091245-49091264 Msa0167220:three_prime_UTR 40.0%
GCAGAGATTCAACATGGTTA+CGG + chr1_4:49091348-49091367 None:intergenic 40.0%
! TTCATTCCCGCCAAATTTTG+AGG - chr1_4:49091630-49091649 Msa0167220:intron 40.0%
AAAGGAAGCAACCTTCAAAG+TGG + chr1_4:49091779-49091798 None:intergenic 40.0%
!! CATTGATTCTACTTGACGCT+AGG + chr1_4:49091964-49091983 None:intergenic 40.0%
GCTGCTAGAATTGATTATGG+AGG + chr1_4:49092031-49092050 None:intergenic 40.0%
GGAGCTGCTAGAATTGATTA+TGG + chr1_4:49092034-49092053 None:intergenic 40.0%
!! GCTCCAAATGCTTTAAAGAG+TGG - chr1_4:49092049-49092068 Msa0167220:CDS 40.0%
!!! AATTTTCAGGTTCAAGGTGG+TGG - chr1_4:49092089-49092108 Msa0167220:CDS 40.0%
TGTTTAGACCTAAACGAGCA+AGG + chr1_4:49092139-49092158 None:intergenic 40.0%
CTCGTTTAGGTCTAAACACA+AGG - chr1_4:49092141-49092160 Msa0167220:CDS 40.0%
AAACACAAGGCTCGTTTCTA+AGG - chr1_4:49092154-49092173 Msa0167220:CDS 40.0%
! TTAACAGTTTAGGCGCTGTT+TGG - chr1_4:49092245-49092264 Msa0167220:intron 40.0%
TTAGATGAGCTACAGACTGA+TGG - chr1_4:49092613-49092632 Msa0167220:intron 40.0%
CAAGAAATCAGGTACAGACT+TGG + chr1_4:49092844-49092863 None:intergenic 40.0%
! ATACTTCGAATCAGTTGGTG+GGG + chr1_4:49092904-49092923 None:intergenic 40.0%
! TTATGCTCCCTGTTATTTGC+AGG - chr1_4:49093090-49093109 Msa0167220:intron 40.0%
CTGGATATATTCATGAGAGG+GGG - chr1_4:49093212-49093231 Msa0167220:intron 40.0%
ATATATTCATGAGAGGGGGA+GGG - chr1_4:49093216-49093235 Msa0167220:intron 40.0%
CAATTTATGCATCGCATTGC+TGG + chr1_4:49093346-49093365 None:intergenic 40.0%
CAGCAATGCGATGCATAAAT+TGG - chr1_4:49093344-49093363 Msa0167220:intron 40.0%
TTGTGGATCGCAAGAAATAG+CGG - chr1_4:49093565-49093584 Msa0167220:intron 40.0%
AATAGCCTCTTGCAATTGCA+AGG - chr1_4:49093771-49093790 Msa0167220:intron 40.0%
!! CAACCTGGTGCTATAAAGTA+CGG + chr1_4:49093858-49093877 None:intergenic 40.0%
TATCATTGGAGGATATCCAG+GGG + chr1_4:49093934-49093953 None:intergenic 40.0%
GTATCATTGGAGGATATCCA+GGG + chr1_4:49093935-49093954 None:intergenic 40.0%
! GAAAGATCTTGGGGTATCAT+TGG + chr1_4:49093948-49093967 None:intergenic 40.0%
! CTCGATTCTGAAAGATCTTG+GGG + chr1_4:49093957-49093976 None:intergenic 40.0%
CATGTTCAACCATTGGCATT+GGG + chr1_4:49094244-49094263 None:intergenic 40.0%
TCATGTTCAACCATTGGCAT+TGG + chr1_4:49094245-49094264 None:intergenic 40.0%
ATGTAATCTGCAACCCATAG+TGG - chr1_4:49094325-49094344 Msa0167220:CDS 40.0%
! AAATTACAGGGTATCCAACC+AGG - chr1_4:49094550-49094569 Msa0167220:intron 40.0%
CTTGTAAAGGAGATTGGTAG+TGG - chr1_4:49094681-49094700 Msa0167220:intron 40.0%
TAATTGATGCAGAAAGGCCA+AGG - chr1_4:49094789-49094808 Msa0167220:intron 40.0%
AATTGATGCAGAAAGGCCAA+GGG - chr1_4:49094790-49094809 Msa0167220:intron 40.0%
GTTGCCCAACGTAAAATTTG+TGG - chr1_4:49095431-49095450 Msa0167220:intron 40.0%
! GCTGTAACTTTGGGAAAAGA+TGG - chr1_4:49095453-49095472 Msa0167220:intron 40.0%
AGTGGATGTAGACAACTTAG+TGG - chr1_4:49095615-49095634 Msa0167220:intron 40.0%
ATTACCGATGATATGCAGGT+TGG + chr1_4:49095679-49095698 None:intergenic 40.0%
TTGCATTACCGATGATATGC+AGG + chr1_4:49095683-49095702 None:intergenic 40.0%
CTTCGCAGAAAGATTTGGAA+TGG + chr1_4:49095746-49095765 None:intergenic 40.0%
CATTCCAAATCTTTCTGCGA+AGG - chr1_4:49095744-49095763 Msa0167220:intron 40.0%
CTGCTTGTAGACCACAAAAA+TGG + chr1_4:49095770-49095789 None:intergenic 40.0%
TAGTGACGTACTGAATGACT+TGG - chr1_4:49096029-49096048 Msa0167220:intron 40.0%
!! ATCCCTGAAGTTCTAGAAAC+AGG - chr1_4:49096052-49096071 Msa0167220:intron 40.0%
!! TCCCTGAAGTTCTAGAAACA+GGG - chr1_4:49096053-49096072 Msa0167220:intron 40.0%
!! TCCCTGTTTCTAGAACTTCA+GGG + chr1_4:49096057-49096076 None:intergenic 40.0%
!! ATCCCTGTTTCTAGAACTTC+AGG + chr1_4:49096058-49096077 None:intergenic 40.0%
GAAGGAATAGGAACGGTTAT+CGG - chr1_4:49096178-49096197 Msa0167220:CDS 40.0%
AAGGAATAGGAACGGTTATC+GGG - chr1_4:49096179-49096198 Msa0167220:CDS 40.0%
GTTATCGGGAAACTATACGT+CGG - chr1_4:49096193-49096212 Msa0167220:CDS 40.0%
AGATCCAATAAATGCATCCC+CGG + chr1_4:49096266-49096285 None:intergenic 40.0%
TTGCGTAAGACACAAATTGG+TGG + chr1_4:49096346-49096365 None:intergenic 40.0%
CCTTTGCGTAAGACACAAAT+TGG + chr1_4:49096349-49096368 None:intergenic 40.0%
CCAATTTGTGTCTTACGCAA+AGG - chr1_4:49096346-49096365 Msa0167220:intron 40.0%
CATACCACATTAGCAGCAAA+GGG + chr1_4:49096470-49096489 None:intergenic 40.0%
ACATACCACATTAGCAGCAA+AGG + chr1_4:49096471-49096490 None:intergenic 40.0%
ACACACACACGATACGAATT+AGG + chr1_4:49096617-49096636 None:intergenic 40.0%
GAACCTATTGGAGATGAGTT+AGG - chr1_4:49096661-49096680 Msa0167220:intron 40.0%
GTACCTAACTCATCTCCAAT+AGG + chr1_4:49096667-49096686 None:intergenic 40.0%
! TTTTAATGGGGATTTCAGGC+AGG - chr1_4:49096704-49096723 Msa0167220:intron 40.0%
TCTACTGAATAAAGGACGCT+AGG + chr1_4:49096787-49096806 None:intergenic 40.0%
ACTGAAGACATCCCTTGTAT+TGG + chr1_4:49096825-49096844 None:intergenic 40.0%
AATACAAGGGATGTCTTCAG+TGG - chr1_4:49096824-49096843 Msa0167220:intron 40.0%
ATACAAGGGATGTCTTCAGT+GGG - chr1_4:49096825-49096844 Msa0167220:intron 40.0%
CATTTATGTAAGGGAAGGGA+TGG - chr1_4:49096940-49096959 Msa0167220:CDS 40.0%
TGGCCATAAAGTGAGTGAAG+TGG + chr1_4:49091251-49091270 None:intergenic 45.0%
AAAGAGAGGGAAACGCACAA+CGG + chr1_4:49091600-49091619 None:intergenic 45.0%
!! ATCAGTCACCGTCGATTTCT+TGG - chr1_4:49091708-49091727 Msa0167220:intron 45.0%
AACGGTAGCCAAGAAATCGA+CGG + chr1_4:49091719-49091738 None:intergenic 45.0%
TGGCTTAGGATAAGCAGCAA+CGG + chr1_4:49091737-49091756 None:intergenic 45.0%
GCGTCAAGTAGAATCAATGC+TGG - chr1_4:49091965-49091984 Msa0167220:intron 45.0%
!! AAGGCAGGTTAAAGCATTGC+CGG + chr1_4:49092120-49092139 None:intergenic 45.0%
TTAACCTGCCTTGCTCGTTT+AGG - chr1_4:49092128-49092147 Msa0167220:CDS 45.0%
GAGAAATCAGGTGCAGACTA+GGG + chr1_4:49092822-49092841 None:intergenic 45.0%
GGTACAGACTTGGAGAAATC+AGG + chr1_4:49092834-49092853 None:intergenic 45.0%
GAGTGGATGTGCAAGAAATC+AGG + chr1_4:49092855-49092874 None:intergenic 45.0%
GATATATTCATGAGAGGGGG+AGG - chr1_4:49093215-49093234 Msa0167220:intron 45.0%
TATATTCATGAGAGGGGGAG+GGG - chr1_4:49093217-49093236 Msa0167220:intron 45.0%
GAGTTAGGTGGATCTAGTTG+AGG - chr1_4:49093247-49093266 Msa0167220:intron 45.0%
CAACTCTGCGAGTTATGCTA+AGG + chr1_4:49093516-49093535 None:intergenic 45.0%
TATGCTGTAGTGCTAGAGTG+CGG - chr1_4:49093604-49093623 Msa0167220:intron 45.0%
GCTATAGTGCTATAGAGTGG+CGG + chr1_4:49093698-49093717 None:intergenic 45.0%
! GGTGCTATAGTGCTATAGAG+TGG + chr1_4:49093701-49093720 None:intergenic 45.0%
CCATGGCAGCATACAAAGAA+GGG + chr1_4:49093827-49093846 None:intergenic 45.0%
GATCCGTACTTTATAGCACC+AGG - chr1_4:49093852-49093871 Msa0167220:intron 45.0%
CGAACTTGTATACATACCCC+TGG - chr1_4:49093915-49093934 Msa0167220:intron 45.0%
GGTATCATTGGAGGATATCC+AGG + chr1_4:49093936-49093955 None:intergenic 45.0%
! AGATCTTGGGGTATCATTGG+AGG + chr1_4:49093945-49093964 None:intergenic 45.0%
!!! TCGCTTGCCTATGTTTTTGG+TGG - chr1_4:49094502-49094521 Msa0167220:intron 45.0%
! ACACCAATGGTACCCTTTTC+CGG - chr1_4:49095218-49095237 Msa0167220:intron 45.0%
CCATGCCTGTAAGCAAAGAA+AGG + chr1_4:49095364-49095383 None:intergenic 45.0%
CCTTTCTTTGCTTACAGGCA+TGG - chr1_4:49095361-49095380 Msa0167220:intron 45.0%
AGGATAGAAACAAGTGCTCG+CGG + chr1_4:49095405-49095424 None:intergenic 45.0%
AAGTCCTACCACAGAAGAAG+TGG - chr1_4:49095597-49095616 Msa0167220:intron 45.0%
ACATCCACTTCTTCTGTGGT+AGG + chr1_4:49095604-49095623 None:intergenic 45.0%
GTCTACATCCACTTCTTCTG+TGG + chr1_4:49095608-49095627 None:intergenic 45.0%
AGACAACTTAGTGGAATCGC+TGG - chr1_4:49095624-49095643 Msa0167220:intron 45.0%
ATGGCCTTCGCAGAAAGATT+TGG + chr1_4:49095751-49095770 None:intergenic 45.0%
!!! TTCTGCGAAGGCCATTTTTG+TGG - chr1_4:49095756-49095775 Msa0167220:intron 45.0%
CAAGCAGACTAGTGCATATG+AGG - chr1_4:49095783-49095802 Msa0167220:intron 45.0%
! CCTTCAATTTTGCCACTGAC+TGG + chr1_4:49096156-49096175 None:intergenic 45.0%
CCAGTCAGTGGCAAAATTGA+AGG - chr1_4:49096153-49096172 Msa0167220:intron 45.0%
GTGGCAAAATTGAAGGCAGA+AGG - chr1_4:49096160-49096179 Msa0167220:intron 45.0%
GAAGGCAGAAGGAATAGGAA+CGG - chr1_4:49096171-49096190 Msa0167220:CDS 45.0%
! TCCAGCATTGAGCCAATACA+AGG - chr1_4:49096810-49096829 Msa0167220:intron 45.0%
! CCAGCATTGAGCCAATACAA+GGG - chr1_4:49096811-49096830 Msa0167220:intron 45.0%
TACAAGGGATGTCTTCAGTG+GGG - chr1_4:49096826-49096845 Msa0167220:intron 45.0%
!! AAACTATTAAAAAAAAAAAA+AGG + chr1_4:49091797-49091816 None:intergenic 5.0%
! GTTCAAGGTGGTGGTAATGC+CGG - chr1_4:49092098-49092117 Msa0167220:CDS 50.0%
TAGACCTAAACGAGCAAGGC+AGG + chr1_4:49092135-49092154 None:intergenic 50.0%
CATCTAATATGCCCCTGCCT+GGG + chr1_4:49092600-49092619 None:intergenic 50.0%
TCATCTAATATGCCCCTGCC+TGG + chr1_4:49092601-49092620 None:intergenic 50.0%
GGAGAAATCAGGTGCAGACT+AGG + chr1_4:49092823-49092842 None:intergenic 50.0%
ATATTCATGAGAGGGGGAGG+GGG - chr1_4:49093218-49093237 Msa0167220:intron 50.0%
GGAAGCCTTGCAATTGCAAG+AGG + chr1_4:49093779-49093798 None:intergenic 50.0%
CCCTTCTTTGTATGCTGCCA+TGG - chr1_4:49093824-49093843 Msa0167220:intron 50.0%
GCCATGGCAGCATACAAAGA+AGG + chr1_4:49093828-49093847 None:intergenic 50.0%
TCTTTGTATGCTGCCATGGC+AGG - chr1_4:49093828-49093847 Msa0167220:intron 50.0%
AAAGTACGGATCTCCTGCCA+TGG + chr1_4:49093844-49093863 None:intergenic 50.0%
GAATGAGTCAAAGGGCAACC+TGG + chr1_4:49093873-49093892 None:intergenic 50.0%
TGCTCTAGTTGTTGCCCATG+AGG - chr1_4:49094037-49094056 Msa0167220:intron 50.0%
GCTCATCATCCCAATGCCAA+TGG - chr1_4:49094232-49094251 Msa0167220:intron 50.0%
! TTTTTCCAGTGCAGGCAGCT+AGG - chr1_4:49094750-49094769 Msa0167220:intron 50.0%
ATGCAGAAAGGCCAAGGGAA+GGG - chr1_4:49094795-49094814 Msa0167220:intron 50.0%
AGATCATCCAACCCTTCCCT+TGG + chr1_4:49094809-49094828 None:intergenic 50.0%
!! CAACCGGAAAAGGGTACCAT+TGG + chr1_4:49095224-49095243 None:intergenic 50.0%
TTGCTTACAGGCATGGACAG+AGG - chr1_4:49095368-49095387 Msa0167220:intron 50.0%
!! CTGCTCGAGAGAAGTGTCAA+TGG - chr1_4:49095483-49095502 Msa0167220:intron 50.0%
!! GTAGGACTTGCTGCCAGAAA+AGG + chr1_4:49095586-49095605 None:intergenic 50.0%
GGAATCGCTGGAGTTGAGAA+AGG - chr1_4:49095636-49095655 Msa0167220:intron 50.0%
TTTCCCTTGCATCCAGTCAG+TGG - chr1_4:49096141-49096160 Msa0167220:intron 50.0%
! TTGCCACTGACTGGATGCAA+GGG + chr1_4:49096147-49096166 None:intergenic 50.0%
! TTTGCCACTGACTGGATGCA+AGG + chr1_4:49096148-49096167 None:intergenic 50.0%
AGTGGTATCAACAAGCTCCG+AGG + chr1_4:49096239-49096258 None:intergenic 50.0%
!! TCGGAGCTTGTTGATACCAC+TGG - chr1_4:49096238-49096257 Msa0167220:intron 50.0%
CTTGTTGATACCACTGGTGC+CGG - chr1_4:49096244-49096263 Msa0167220:intron 50.0%
TTGTTGATACCACTGGTGCC+GGG - chr1_4:49096245-49096264 Msa0167220:intron 50.0%
GCAAAGGGTAGCATTGTCTC+TGG + chr1_4:49096455-49096474 None:intergenic 50.0%
GCTACCCTTTGCTGCTAATG+TGG - chr1_4:49096463-49096482 Msa0167220:intron 50.0%
TGCTCCTAGATCTCTGCACT+TGG + chr1_4:49096732-49096751 None:intergenic 50.0%
! AGAGATCTAGGAGCACGAAG+CGG - chr1_4:49096737-49096756 Msa0167220:intron 50.0%
GAATAAAGGACGCTAGGCGT+GGG + chr1_4:49096781-49096800 None:intergenic 50.0%
TGAATAAAGGACGCTAGGCG+TGG + chr1_4:49096782-49096801 None:intergenic 50.0%
!! CCCTTGTATTGGCTCAATGC+TGG + chr1_4:49096814-49096833 None:intergenic 50.0%
!! AACGGTGGCGCTTTGAGGAA+CGG + chr1_4:49091582-49091601 None:intergenic 55.0%
GTACACGCACGTGCTTATGC+AGG - chr1_4:49091675-49091694 Msa0167220:intron 55.0%
ACGCACGTGCTTATGCAGGT+GGG - chr1_4:49091679-49091698 Msa0167220:intron 55.0%
!! GTGCTTATGCAGGTGGGTTG+TGG - chr1_4:49091685-49091704 Msa0167220:intron 55.0%
TAGATTGCGGATGACAGCCC+AGG - chr1_4:49092580-49092599 Msa0167220:intron 55.0%
! TGAGCTACAGACTGATGGCG+TGG - chr1_4:49092618-49092637 Msa0167220:intron 55.0%
TATTCATGAGAGGGGGAGGG+GGG - chr1_4:49093219-49093238 Msa0167220:intron 55.0%
TTCTTCCTAGCTGCCTGCAC+TGG + chr1_4:49094758-49094777 None:intergenic 55.0%
GATGCAGAAAGGCCAAGGGA+AGG - chr1_4:49094794-49094813 Msa0167220:intron 55.0%
AGAAAGGCCAAGGGAAGGGT+TGG - chr1_4:49094799-49094818 Msa0167220:intron 55.0%
! TGTTGATACCACTGGTGCCG+GGG - chr1_4:49096246-49096265 Msa0167220:intron 55.0%
! GGTGCCGGGGATGCATTTAT+TGG - chr1_4:49096259-49096278 Msa0167220:intron 55.0%
GGTGCCAAGTGCAGAGATCT+AGG - chr1_4:49096725-49096744 Msa0167220:intron 55.0%
GAGAGGGAAACGCACAACGG+TGG + chr1_4:49091597-49091616 None:intergenic 60.0%
CACGCACGTGCTTATGCAGG+TGG - chr1_4:49091678-49091697 Msa0167220:intron 60.0%
!! GTGGGGTTCTGGACTGCCAA+TGG - chr1_4:49093030-49093049 Msa0167220:intron 60.0%
! AGGGGGGAGCATGAGTTAGG+TGG - chr1_4:49093235-49093254 Msa0167220:intron 60.0%
AAATGCATCCCCGGCACCAG+TGG + chr1_4:49096257-49096276 None:intergenic 60.0%
!! GGTGGCGCTTTGAGGAACGG+AGG + chr1_4:49091579-49091598 None:intergenic 65.0%
CGCACAACGGTGGCGCTTTG+AGG + chr1_4:49091587-49091606 None:intergenic 65.0%
TTGCGGATGACAGCCCAGGC+AGG - chr1_4:49092584-49092603 Msa0167220:intron 65.0%
TGCGGATGACAGCCCAGGCA+GGG - chr1_4:49092585-49092604 Msa0167220:intron 65.0%
! GGGAGGGGGGAGCATGAGTT+AGG - chr1_4:49093232-49093251 Msa0167220:intron 65.0%
GCGGATGACAGCCCAGGCAG+GGG - chr1_4:49092586-49092605 Msa0167220:intron 70.0%
AGGCGTGGGTCTGCGCGGTA+TGG + chr1_4:49096767-49096786 None:intergenic 70.0%
ACGCTAGGCGTGGGTCTGCG+CGG + chr1_4:49096772-49096791 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 49091236 49097107 49091236 ID=Msa0167220;Name=Msa0167220
chr1_4 mRNA 49091236 49097107 49091236 ID=Msa0167220-mRNA-1;Parent=Msa0167220;Name=Msa0167220-mRNA-1;_AED=0.15;_eAED=0.15;_QI=117|1|1|1|0.83|0.76|13|302|405
chr1_4 exon 49091236 49091621 49091236 ID=Msa0167220-mRNA-1:exon:14439;Parent=Msa0167220-mRNA-1
chr1_4 exon 49091859 49091911 49091859 ID=Msa0167220-mRNA-1:exon:14438;Parent=Msa0167220-mRNA-1
chr1_4 exon 49092048 49092186 49092048 ID=Msa0167220-mRNA-1:exon:14437;Parent=Msa0167220-mRNA-1
chr1_4 exon 49092650 49092747 49092650 ID=Msa0167220-mRNA-1:exon:14436;Parent=Msa0167220-mRNA-1
chr1_4 exon 49092839 49092965 49092839 ID=Msa0167220-mRNA-1:exon:14435;Parent=Msa0167220-mRNA-1
chr1_4 exon 49093469 49093579 49093469 ID=Msa0167220-mRNA-1:exon:14434;Parent=Msa0167220-mRNA-1
chr1_4 exon 49094285 49094435 49094285 ID=Msa0167220-mRNA-1:exon:14433;Parent=Msa0167220-mRNA-1
chr1_4 exon 49095179 49095231 49095179 ID=Msa0167220-mRNA-1:exon:14432;Parent=Msa0167220-mRNA-1
chr1_4 exon 49095686 49095760 49095686 ID=Msa0167220-mRNA-1:exon:14431;Parent=Msa0167220-mRNA-1
chr1_4 exon 49096168 49096245 49096168 ID=Msa0167220-mRNA-1:exon:14430;Parent=Msa0167220-mRNA-1
chr1_4 exon 49096557 49096646 49096557 ID=Msa0167220-mRNA-1:exon:14429;Parent=Msa0167220-mRNA-1
chr1_4 exon 49096742 49096813 49096742 ID=Msa0167220-mRNA-1:exon:14428;Parent=Msa0167220-mRNA-1
chr1_4 exon 49096904 49097107 49096904 ID=Msa0167220-mRNA-1:exon:14427;Parent=Msa0167220-mRNA-1
chr1_4 five_prime_UTR 49096991 49097107 49096991 ID=Msa0167220-mRNA-1:five_prime_utr;Parent=Msa0167220-mRNA-1
chr1_4 CDS 49096904 49096990 49096904 ID=Msa0167220-mRNA-1:cds;Parent=Msa0167220-mRNA-1
chr1_4 CDS 49096742 49096813 49096742 ID=Msa0167220-mRNA-1:cds;Parent=Msa0167220-mRNA-1
chr1_4 CDS 49096557 49096646 49096557 ID=Msa0167220-mRNA-1:cds;Parent=Msa0167220-mRNA-1
chr1_4 CDS 49096168 49096245 49096168 ID=Msa0167220-mRNA-1:cds;Parent=Msa0167220-mRNA-1
chr1_4 CDS 49095686 49095760 49095686 ID=Msa0167220-mRNA-1:cds;Parent=Msa0167220-mRNA-1
chr1_4 CDS 49095179 49095231 49095179 ID=Msa0167220-mRNA-1:cds;Parent=Msa0167220-mRNA-1
chr1_4 CDS 49094285 49094435 49094285 ID=Msa0167220-mRNA-1:cds;Parent=Msa0167220-mRNA-1
chr1_4 CDS 49093469 49093579 49093469 ID=Msa0167220-mRNA-1:cds;Parent=Msa0167220-mRNA-1
chr1_4 CDS 49092839 49092965 49092839 ID=Msa0167220-mRNA-1:cds;Parent=Msa0167220-mRNA-1
chr1_4 CDS 49092650 49092747 49092650 ID=Msa0167220-mRNA-1:cds;Parent=Msa0167220-mRNA-1
chr1_4 CDS 49092048 49092186 49092048 ID=Msa0167220-mRNA-1:cds;Parent=Msa0167220-mRNA-1
chr1_4 CDS 49091859 49091911 49091859 ID=Msa0167220-mRNA-1:cds;Parent=Msa0167220-mRNA-1
chr1_4 CDS 49091538 49091621 49091538 ID=Msa0167220-mRNA-1:cds;Parent=Msa0167220-mRNA-1
chr1_4 three_prime_UTR 49091236 49091537 49091236 ID=Msa0167220-mRNA-1:three_prime_utr;Parent=Msa0167220-mRNA-1
Gene Sequence

>Msa0167220

ATGTTGAATCTCTGCACTTTTTCTTCTAATATTTCTTCTTCTTCAACTTTCATCTTCAACAATATTCAACATCTCAAATTCTACAATTTAACAAGGAATCATCGCAGTAGAAATTTGAAGGTCAAAATGTGCTCCTCCGTTCCTCAAAGCGCCACCGTTGTGGGTTGTGGATCAGTCACCGTCGATTTCTTGGCTACCGTTGCTGCTTATCCTAAGCCAGATGATAAAATCAGAACAACCACTTTGAAGGTTCAAGGTGGTGGTAATGCCGGCAATGCTTTAACCTGCCTTGCTCGTTTAGGTCTAAACACAAGGCTCGTTTCTAAGATTGCGGATGACAGCCCAGGCAGGGGCATATTAGATGAGCTACAGACTGATGGCGTGGATACATCTTTTATTGTGGTATCTAAAGAGGGAACTTCACCGTTTACGTACATTATTGTGGACAATGAAACGAAGACTCGAACTTGTATACATACCCCTGGATATCCTCCAATGATACCCCAAGATCTTTCAGAATCGAGTTTGTTATCTGCATTGGATGGAGCAAGCATTGTATATTTTGATGGGAGATTGTATGAAACTGCTCTAGTTGTTGCCCATGAGGCAGCTAGGAAGAATATACCCATCTTAATTGATGCAGAAAGGCCAAGGGAAGGGTTGGATGATCTCCTAAAATTAGCTGATTATGTTGTATGCTCAGCTAAATTTCCAAAGGCATGGACAGAGGCATCAACTGTTCCGCGAGCACTTGTTTCTATCCTTTTAAAGTTGCCCAACGTAAAATTTGTGGCTGTAACTTTGGGAAAAGATGGTTGTATACTGCTCGAGAGAAGTGTCAATGCAAGTCCTACCACAGAAGAAGTGGATGTAGACAACTTAGTGGAATCGCTGGAGTTGAGAAAGGATAAGAGTGCATCAATTCCAACCTGCATATCATCGTCAGTGGCAAAATTGAAGGCAGAAGGAATAGGAACGGTTATCGGGAAACTATACGTCGGTACAGCTGAGAACATTCCACCCTCGGAGCTTGTTGATACCACTGGTGCCGGGGATGCATTTATTGGATCTGTGATCTATGCTATTTGTTCGAAGTTCTCACCAGAGACAATGCTACCCTTTGCTGCTAATGTGGCAGGTGCCAAGTGCAGAGATCTAGGAGCACGAAGCGGTCTTCCATACCGCGCAGACCCACGCCTAGCGTCCTTTATTCAGTAG

Protein sequence

>Msa0167220

MLNLCTFSSNISSSSTFIFNNIQHLKFYNLTRNHRSRNLKVKMCSSVPQSATVVGCGSVTVDFLATVAAYPKPDDKIRTTTLKVQGGGNAGNALTCLARLGLNTRLVSKIADDSPGRGILDELQTDGVDTSFIVVSKEGTSPFTYIIVDNETKTRTCIHTPGYPPMIPQDLSESSLLSALDGASIVYFDGRLYETALVVAHEAARKNIPILIDAERPREGLDDLLKLADYVVCSAKFPKAWTEASTVPRALVSILLKLPNVKFVAVTLGKDGCILLERSVNASPTTEEVDVDNLVESLELRKDKSASIPTCISSSVAKLKAEGIGTVIGKLYVGTAENIPPSELVDTTGAGDAFIGSVIYAICSKFSPETMLPFAANVAGAKCRDLGARSGLPYRADPRLASFIQ*