AlfalfaGEDB | Msa1198180

M. sativa cultivar zhongmu-4 / Msa1198180

KEGG: K12643|K13066
GO: -
PFAM: PF08100.14

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1198180	RDX60252.1	49.140	698	259	9	11	617	29	721	0.0	647
Msa1198180	RDX60252.1	53.602	347	132	4	299	616	27	373	2.01e-116	374

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1198180	sp\|P28002\|COMT1_MEDSA	50.276	362	139	5	295	617	4	363	3.12e-118	358
Msa1198180	sp\|P28002\|COMT1_MEDSA	40.588	340	125	5	15	280	14	350	2.33e-75	248

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1198180	A0A371E2H8	49.140	698	259	9	11	617	29	721	0.0	647
Msa1198180	A0A371E2H8	53.602	347	132	4	299	616	27	373	9.58e-117	374

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001510	Msa1198180	0.803336	3.659702e-49	-8.615850e-47
Msa0002110	Msa1198180	0.804965	1.677000e-49	-8.615850e-47
Msa0002690	Msa1198180	0.849257	3.630808e-60	-8.615850e-47
Msa0002700	Msa1198180	0.841167	5.599580e-58	-8.615850e-47
Msa0004180	Msa1198180	0.871171	8.372721e-67	-8.615850e-47
Msa0007570	Msa1198180	0.814942	1.191667e-51	-8.615850e-47
Msa0011100	Msa1198180	0.806136	9.521561e-50	-8.615850e-47
Msa0011410	Msa1198180	0.829788	4.231964e-55	-8.615850e-47
Msa0011440	Msa1198180	0.823781	1.151625e-53	-8.615850e-47
Msa0011450	Msa1198180	0.800360	1.494990e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1198180	MtrunA17_Chr8g0367441	83.289	377	23	4	281	617	1	377	0.0	630
Msa1198180	MtrunA17_Chr8g0367441	65.000	360	39	4	3	275	1	360	2.56e-149	436
Msa1198180	MtrunA17_Chr8g0367451	78.723	376	41	3	281	617	1	376	0.0	593
Msa1198180	MtrunA17_Chr8g0367451	65.460	359	38	4	3	275	1	359	8.36e-149	434
Msa1198180	MtrunA17_Chr8g0367491	74.611	386	45	5	273	617	3	376	0.0	559
Msa1198180	MtrunA17_Chr8g0367491	66.571	347	42	3	3	275	13	359	1.84e-145	426
Msa1198180	MtrunA17_Chr8g0367381	84.356	326	30	4	281	585	1	326	0.0	548
Msa1198180	MtrunA17_Chr8g0367381	62.349	332	45	4	3	260	1	326	2.32e-129	383
Msa1198180	MtrunA17_Chr7g0276411	69.468	357	70	3	300	617	6	362	5.41e-175	501
Msa1198180	MtrunA17_Chr7g0276411	58.112	339	68	3	11	275	7	345	8.52e-124	370

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1198180	AT5G54160.1	46.409	362	151	5	295	617	4	361	4.29e-109	332
Msa1198180	AT5G54160.1	37.202	336	133	5	14	275	13	344	2.34e-67	224
Msa1198180	AT1G77520.1	41.160	362	168	6	301	617	20	381	1.17e-82	265
Msa1198180	AT1G77520.1	33.333	345	150	7	9	273	18	362	3.71e-49	176
Msa1198180	AT1G51990.1	38.352	352	173	6	307	616	12	361	2.91e-75	245
Msa1198180	AT1G51990.1	31.953	338	145	8	17	274	12	344	1.27e-41	154
Msa1198180	AT1G51990.2	37.784	352	175	6	307	616	12	361	9.42e-75	243
Msa1198180	AT1G51990.2	31.361	338	147	7	17	274	12	344	1.75e-41	154
Msa1198180	AT1G77530.1	40.055	362	172	6	301	617	20	381	1.96e-74	243
Msa1198180	AT1G77530.1	29.855	345	162	7	9	273	18	362	9.26e-41	152

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Find 148 sgRNAs with CRISPR-Local

Find 1531 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGCTCGTTGATGTTGG+AGG	0.557669	8_1:-49546326	Msa1198180:CDS
AAAAGGCTTGTTGATGTTGG+AGG	0.582099	8_1:-49537179	Msa1198180:CDS
AAACTTGTTCATAACTATTT+TGG	0.153141	8_1:+49546379	None:intergenic
AAATATACCAAGCTCAATTG+CGG	0.612235	8_1:+49539390	None:intergenic
AAATTGATACCATGTATATT+AGG	0.226988	8_1:+49537116	None:intergenic
AACCTTGTTCATAACTATTT+TGG	0.153910	8_1:+49537232	None:intergenic
AACTATTGTTAGATCAAACT+AGG	0.592412	8_1:-49535200	Msa1198180:three_prime_UTR
AAGAATGCAATTCGAGAAGG+GGG	0.661623	8_1:-49546500	Msa1198180:CDS
AAGAATGCGATCCAACATTT+TGG	0.214953	8_1:+49539282	None:intergenic
AAGATTGTTGCAGGAAAGAC+GGG	0.507289	8_1:+49555783	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTTATAAGCTCTTAGGATTA+TGG	-	chr8_1:49535251-49535270	Msa1198180:three_prime_UTR	30.0%
AATGAAAACTAAGGAGAAGA+TGG	+	chr8_1:49535490-49535509	None:intergenic	30.0%
GCAAAATCAGTATATGAAAG+TGG	-	chr8_1:49535658-49535677	Msa1198180:intron	30.0%
TCAAATAAGTGGTTTACTTG+TGG	+	chr8_1:49535685-49535704	None:intergenic	30.0%
ATTAATAGCAGTTTCCGTAT+AGG	-	chr8_1:49535798-49535817	Msa1198180:intron	30.0%
TTAATAGCAGTTTCCGTATA+GGG	-	chr8_1:49535799-49535818	Msa1198180:intron	30.0%
CCCTATACTACACATTAAAA+AGG	+	chr8_1:49535856-49535875	None:intergenic	30.0%
TAACACAAACAAACTCTCTA+CGG	+	chr8_1:49536014-49536033	None:intergenic	30.0%
TGTGATGTTGGAAGAAAAAT+TGG	-	chr8_1:49536247-49536266	Msa1198180:intron	30.0%
GTGTTTAATCTATTACTTCG+TGG	+	chr8_1:49536284-49536303	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	49534916	49558062	49534916	ID=Msa1198180;Name=Msa1198180
chr8_1	mRNA	49534916	49558062	49534916	ID=Msa1198180-mRNA-1;Parent=Msa1198180;Name=Msa1198180-mRNA-1;_AED=0.30;_eAED=0.31;_QI=0\|0.2\|0.18\|0.90\|0.2\|0.18\|11\|374\|617
chr8_1	exon	49534916	49535586	49534916	ID=Msa1198180-mRNA-1:exon:15540;Parent=Msa1198180-mRNA-1
chr8_1	exon	49536727	49536791	49536727	ID=Msa1198180-mRNA-1:exon:15539;Parent=Msa1198180-mRNA-1
chr8_1	exon	49537075	49537234	49537075	ID=Msa1198180-mRNA-1:exon:15538;Parent=Msa1198180-mRNA-1
chr8_1	exon	49537247	49537385	49537247	ID=Msa1198180-mRNA-1:exon:15537;Parent=Msa1198180-mRNA-1
chr8_1	exon	49539181	49539373	49539181	ID=Msa1198180-mRNA-1:exon:15536;Parent=Msa1198180-mRNA-1
chr8_1	exon	49539398	49539572	49539398	ID=Msa1198180-mRNA-1:exon:15535;Parent=Msa1198180-mRNA-1
chr8_1	exon	49545421	49545663	49545421	ID=Msa1198180-mRNA-1:exon:15534;Parent=Msa1198180-mRNA-1
chr8_1	exon	49546316	49546532	49546316	ID=Msa1198180-mRNA-1:exon:15533;Parent=Msa1198180-mRNA-1
chr8_1	exon	49555610	49555844	49555610	ID=Msa1198180-mRNA-1:exon:15532;Parent=Msa1198180-mRNA-1
chr8_1	exon	49555869	49555992	49555869	ID=Msa1198180-mRNA-1:exon:15531;Parent=Msa1198180-mRNA-1
chr8_1	exon	49558057	49558062	49558057	ID=Msa1198180-mRNA-1:exon:15530;Parent=Msa1198180-mRNA-1
chr8_1	CDS	49558057	49558062	49558057	ID=Msa1198180-mRNA-1:cds;Parent=Msa1198180-mRNA-1
chr8_1	CDS	49555869	49555992	49555869	ID=Msa1198180-mRNA-1:cds;Parent=Msa1198180-mRNA-1
chr8_1	CDS	49555610	49555844	49555610	ID=Msa1198180-mRNA-1:cds;Parent=Msa1198180-mRNA-1
chr8_1	CDS	49546316	49546532	49546316	ID=Msa1198180-mRNA-1:cds;Parent=Msa1198180-mRNA-1
chr8_1	CDS	49545421	49545663	49545421	ID=Msa1198180-mRNA-1:cds;Parent=Msa1198180-mRNA-1
chr8_1	CDS	49539398	49539572	49539398	ID=Msa1198180-mRNA-1:cds;Parent=Msa1198180-mRNA-1
chr8_1	CDS	49539181	49539373	49539181	ID=Msa1198180-mRNA-1:cds;Parent=Msa1198180-mRNA-1
chr8_1	CDS	49537247	49537385	49537247	ID=Msa1198180-mRNA-1:cds;Parent=Msa1198180-mRNA-1
chr8_1	CDS	49537075	49537234	49537075	ID=Msa1198180-mRNA-1:cds;Parent=Msa1198180-mRNA-1
chr8_1	CDS	49536727	49536791	49536727	ID=Msa1198180-mRNA-1:cds;Parent=Msa1198180-mRNA-1
chr8_1	CDS	49535290	49535586	49535290	ID=Msa1198180-mRNA-1:cds;Parent=Msa1198180-mRNA-1
chr8_1	three_prime_UTR	49534916	49535289	49534916	ID=Msa1198180-mRNA-1:three_prime_utr;Parent=Msa1198180-mRNA-1

Gene Sequence

>Msa1198180

ATGAAAATGGCCAATCTTTCTAATGTGAAAGAAGAACATGAATTAGAAGATGAAGAAAGTTTCTTATATGCTATACACCTTTGCAACTCTATGGTGCTACCAATGGCACTCCAATCTGCAACTGAGCTTGCTGGTAGAGATGCTCAACTCTCTGCAGATGAGATTGCGTCCCGTCTTTCCTGCAACAATCTTGATGCTCCCAAAATGTTGGATCGCATCCTTGCTCTTCTTGCCTCACATGATGTGTTAAAGTGTTTGGTGGTTCAAGATGAACAAAAGCTTGGATCCTTTCATAGACTTTATAGCATGGCTCCTGTTGCTAGGTTTTTTGCTCCTAATTCTGATGGTGTTTCATTAGGACCCTTGTCCGAGCTTAAGAATGCAATTCGAGAAGGGGGTGTTCCATTCAACATGGTTCATGGCACACATGCCTTTGATTATCCAAGCTTGGACTCAAGGTTCAACCAAATTTTCAATACAGCCATGATCAGTTATACCAAAATAGTTATGAACAAGTTTCTTGAGAGCTACAATGGTTTCAAGGGCATAAAAAGGCTCGTTGATGTTGGAGGTGGTCTTGGGTGCATACTCCATGATTGGAGTGATGAGCTCTGCTTAAAGTTTTTGAAGAATTGTTATGATGCTATCCCTGATGATGGAAAGATGGTTGTTTTAGAGGCACATATTTCCATTGTTCCTGAGAATGATTATGCTTCGAAGTCTACCTCCCAATTAGATGTTCTGATGATGACTCAAAACCCAGGAGGAAAAGAGAGAACTAAGCAAGAATTTCTTGATTTGGCAACAAGAGTTGGATTTAGAGGCGATTTTCAAGTTCACATGGCAAACCATTCTAATGTGAAAGACTTGGGTGTGAATGGAAATGGAGAGAGGAGATCAGAAAAACAAGAATTAGAAGATGATGAAAGTTTCTCATATGCTATACAGCTTTGCAACTCTATGGTGCTACCAATGACACTCCATTCCGCAATTGAGCTTGCTGGTAAAGATGCTCAACTCTCTGCAGATGAGATTGCGTCTCGTATTTCTTGCAACAATCTTGATGCTCCCAAAATGTTGGATCGCATTCTTGCTCTTCTTGCCTCACATGATGTGTTAAAGTGTTTGGTGGTTCAAGATGAACAAAAGCTTGGATCATTTCATAGACTTTATAGTATGACTCCTGTTGCTAGGTCTGAGCTTAATAATGCAATTCGAGAAGGGGGTGTCCCATTCAACATGGTTCATGGCACACATGCCTTTGATTATCCAAGCTTGGACTCAAGGTTCAACAAAGTTTTCAATACAGCGATGATCAATCATACCAAAATAGTTCTTGAGAGCTACAATGGTTTCGAGGGCATAAAAAGGCTTGTTGATGTTGGAGGTGGTCTTGGGGTTAACATTAACTTGGTCACATCAAAATACCCTAATATACATGGTATCAATTTCGACTTGCCTCATGTCATTCAACATGCCCCTTCTTATCCTGGAGTTGAACATGTCGGTGGAGATATGTTTGAAAGTGTGCCTAAAGGAGATGCCATCTTTATGAAGTGGATACTCCATGATTGGAGTGATGAGCACTGCTTAAAGCTTTTGAAGAATTGTTATGATGCTATCCCTAATGATGGGAAGGTGATTGTTTTAGAGGCACATATTCCCGTTGTGCCCGAGAATGGTTATGCTTCAAAGTCTACTGCCCAACTGGATGTTTTGATGATGACTCAAAACCCAGGAGGAAAAGAGAGAACGAAGCAAGAATTCATTGATTTGGCAACTAGAGTTGGATTTAGAGGCATAAGATATGAATGTTGTGTTCGTAACTTCTGGGTTATGGAGTTCTTTAAGTGA

Protein sequence

>Msa1198180

MKMANLSNVKEEHELEDEESFLYAIHLCNSMVLPMALQSATELAGRDAQLSADEIASRLSCNNLDAPKMLDRILALLASHDVLKCLVVQDEQKLGSFHRLYSMAPVARFFAPNSDGVSLGPLSELKNAIREGGVPFNMVHGTHAFDYPSLDSRFNQIFNTAMISYTKIVMNKFLESYNGFKGIKRLVDVGGGLGCILHDWSDELCLKFLKNCYDAIPDDGKMVVLEAHISIVPENDYASKSTSQLDVLMMTQNPGGKERTKQEFLDLATRVGFRGDFQVHMANHSNVKDLGVNGNGERRSEKQELEDDESFSYAIQLCNSMVLPMTLHSAIELAGKDAQLSADEIASRISCNNLDAPKMLDRILALLASHDVLKCLVVQDEQKLGSFHRLYSMTPVARSELNNAIREGGVPFNMVHGTHAFDYPSLDSRFNKVFNTAMINHTKIVLESYNGFEGIKRLVDVGGGLGVNINLVTSKYPNIHGINFDLPHVIQHAPSYPGVEHVGGDMFESVPKGDAIFMKWILHDWSDEHCLKLLKNCYDAIPNDGKVIVLEAHIPVVPENGYASKSTAQLDVLMMTQNPGGKERTKQEFIDLATRVGFRGIRYECCVRNFWVMEFFK*