AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1225610


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1225610 MtrunA17_Chr4g0064131 93.301 209 13 1 1 209 1 208 2.06e-122 345
Msa1225610 MtrunA17_Chr3g0137601 31.963 219 125 8 1 207 1 207 6.50e-29 107
Msa1225610 MtrunA17_Chr1g0183251 30.952 168 63 5 93 207 83 250 4.98e-19 82.8
Msa1225610 MtrunA17_Chr7g0260621 28.834 163 91 4 59 207 44 195 1.69e-18 80.1
Msa1225610 MtrunA17_Chr1g0184791 28.922 204 106 7 34 208 35 228 4.24e-18 79.7
Msa1225610 MtrunA17_Chr1g0166011 29.932 147 75 4 69 207 50 176 7.87e-18 77.8
Msa1225610 MtrunA17_Chr1g0190711 31.646 158 76 6 78 207 82 235 1.28e-16 75.9
Msa1225610 MtrunA17_Chr1g0187961 26.506 166 88 5 62 207 21 172 1.28e-16 74.3
Msa1225610 MtrunA17_Chr5g0411501 27.673 159 82 3 76 207 165 317 1.56e-16 76.6
Msa1225610 MtrunA17_Chr1g0187921 26.380 163 96 3 67 207 58 218 2.59e-16 74.7
Msa1225610 MtrunA17_Chr2g0330951 28.662 157 69 4 93 207 97 252 4.53e-16 74.7
Msa1225610 MtrunA17_Chr6g0486121 31.944 144 66 4 90 207 99 236 4.63e-16 74.3
Msa1225610 MtrunA17_Chr8g0366881 28.125 160 88 3 71 206 173 329 5.63e-16 75.1
Msa1225610 MtrunA17_Chr1g0184801 26.543 162 93 3 60 207 46 195 7.46e-16 72.8
Msa1225610 MtrunA17_Chr7g0260641 29.927 137 72 3 93 208 100 233 1.73e-15 72.8
Msa1225610 MtrunA17_Chr4g0004181 33.884 121 57 3 93 206 55 159 1.82e-15 71.2
Msa1225610 MtrunA17_Chr8g0390281 30.935 139 68 2 93 207 141 275 3.67e-15 72.4
Msa1225610 MtrunA17_Chr5g0428141 30.657 137 69 6 93 207 197 329 3.75e-15 72.8
Msa1225610 MtrunA17_Chr4g0069561 32.000 125 64 4 91 207 70 181 6.92e-15 69.7
Msa1225610 MtrunA17_Chr7g0270851 38.043 92 48 2 124 206 64 155 1.76e-13 65.5
Msa1225610 MtrunA17_Chr1g0209181 31.967 122 68 4 93 206 54 168 3.27e-13 65.1
Msa1225610 MtrunA17_Chr1g0193861 32.500 120 59 4 96 206 64 170 3.64e-13 65.1
Msa1225610 MtrunA17_Chr2g0332141 32.990 97 48 2 130 209 8 104 2.56e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1225610 AT4G32280.1 28.745 247 132 8 1 208 1 242 2.52e-26 102
Msa1225610 AT1G04550.2 35.616 146 61 4 93 205 70 215 1.21e-21 89.4
Msa1225610 AT4G32280.2 43.902 82 43 1 130 208 119 200 1.17e-20 86.3
Msa1225610 AT2G33310.3 31.169 154 62 4 93 207 76 224 6.45e-20 85.1
Msa1225610 AT2G33310.1 31.169 154 62 4 93 207 76 224 6.45e-20 85.1
Msa1225610 AT2G33310.2 31.169 154 62 4 93 207 77 225 6.98e-20 85.1
Msa1225610 AT5G25890.1 32.192 146 93 2 64 207 20 161 7.68e-20 83.2
Msa1225610 AT5G43700.1 29.927 137 78 3 79 207 49 175 2.12e-18 79.7
Msa1225610 AT4G28640.3 29.932 147 71 3 93 207 89 235 2.02e-17 78.2
Msa1225610 AT1G04240.1 31.655 139 77 3 78 207 50 179 2.16e-17 77.0
Msa1225610 AT4G28640.1 29.932 147 71 3 93 207 89 235 2.38e-17 78.2
Msa1225610 AT1G04240.2 31.655 139 77 3 78 207 150 279 3.15e-17 78.6
Msa1225610 AT4G28640.2 29.932 147 71 3 93 207 89 235 6.71e-17 77.8
Msa1225610 AT4G14550.1 30.147 136 72 2 93 207 77 210 8.73e-17 76.3
Msa1225610 AT4G14550.2 30.147 136 72 2 93 207 77 210 9.13e-17 76.3
Msa1225610 AT3G23030.1 26.994 163 84 5 61 207 21 164 1.79e-16 74.3
Msa1225610 AT3G23030.2 26.994 163 84 5 61 207 108 251 5.06e-16 74.7
Msa1225610 AT3G15540.1 33.884 121 63 2 93 206 71 181 5.19e-16 73.6
Msa1225610 AT3G17600.1 30.952 126 75 2 85 206 37 154 6.09e-16 72.4
Msa1225610 AT5G65670.1 30.657 137 69 3 93 206 184 317 6.35e-16 75.5
Msa1225610 AT5G65670.2 30.657 137 69 3 93 206 184 317 6.58e-16 75.5
Msa1225610 AT2G22670.5 32.374 139 67 5 93 207 166 301 2.61e-15 73.6
Msa1225610 AT2G22670.2 32.374 139 67 5 93 207 166 301 2.61e-15 73.6
Msa1225610 AT2G22670.3 32.374 139 67 5 93 207 166 301 2.67e-15 73.6
Msa1225610 AT2G22670.1 32.374 139 67 5 93 207 166 301 2.67e-15 73.6
Msa1225610 AT2G22670.4 32.374 139 67 5 93 207 183 318 3.55e-15 73.2
Msa1225610 AT1G15580.1 33.333 120 58 5 93 206 54 157 9.37e-15 69.3
Msa1225610 AT1G52830.1 31.667 120 61 4 94 206 72 177 2.11e-14 68.9
Msa1225610 AT3G23050.1 28.205 156 85 2 79 207 69 224 3.19e-14 69.7
Msa1225610 AT1G51950.1 27.746 173 87 3 72 207 77 248 3.45e-14 69.7
Msa1225610 AT3G16500.2 27.891 147 74 3 93 207 104 250 1.30e-13 68.2
Msa1225610 AT3G16500.1 27.891 147 74 3 93 207 104 250 1.30e-13 68.2
Msa1225610 AT4G29080.1 27.778 144 75 3 93 207 144 287 1.49e-13 68.6
Msa1225610 AT1G04250.1 27.737 137 69 3 93 207 83 211 2.82e-13 66.6
Msa1225610 AT3G62100.1 38.372 86 45 1 130 207 84 169 9.78e-13 64.3
Msa1225610 AT3G04730.1 24.837 153 72 4 93 207 71 218 1.02e-12 65.5
Msa1225610 AT4G32280.3 26.471 204 109 7 1 168 1 199 1.07e-12 64.7
Msa1225610 AT2G46990.1 37.209 86 46 1 130 207 86 171 2.27e-12 63.2
Msa1225610 AT4G14550.3 29.752 121 62 2 93 192 77 195 3.98e-12 63.2
Msa1225610 AT1G15050.2 37.647 85 46 1 129 206 61 145 8.12e-12 61.2
Msa1225610 AT4G14560.1 32.558 86 50 1 130 207 76 161 1.01e-11 61.2
Msa1225610 AT1G15050.1 37.647 85 46 1 129 206 93 177 1.61e-11 61.2

Find 65 sgRNAs with CRISPR-Local

Find 146 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATACCCATTGATTAATATT+TGG 0.091033 8_1:-91083854 None:intergenic
TTGCTTTGCTCACCTTTAAT+TGG 0.204563 8_1:+91083827 Msa1225610:three_prime_UTR
ATATTTGGGTTTCCAATTAA+AGG 0.209829 8_1:-91083839 None:intergenic
TCTCTTTGAATCATGATAAT+AGG 0.233271 8_1:+91081732 Msa1225610:CDS
TCTGAGTGGCCAGGAGTTAA+TGG 0.256229 8_1:-91081824 None:intergenic
ATACCCATTGATTAATATTT+GGG 0.271124 8_1:-91083853 None:intergenic
CAAACATGTCCATCAAAGTT+TGG 0.287284 8_1:-91082232 None:intergenic
TACTCTCAACCAAACTTTGA+TGG 0.301864 8_1:+91082223 Msa1225610:CDS
GAATTACGTGAAGGTGAAAA+TGG 0.315246 8_1:+91082148 Msa1225610:CDS
TCACAATATGGAGCTTCATT+TGG 0.317095 8_1:+91081646 Msa1225610:exon
CTCTCTACACAATCACAATA+TGG 0.343546 8_1:+91081634 Msa1225610:exon
GAGAGAAAGAGTGGGAAGGT+TGG 0.357245 8_1:-91081798 None:intergenic
TAGACCACCACCGAGAAATA+TGG 0.358386 8_1:-91083994 None:intergenic
CACAATATGGAGCTTCATTT+GGG 0.385933 8_1:+91081647 Msa1225610:exon
ATCAAGACAAAGAAGGTGAT+TGG 0.388129 8_1:+91082412 Msa1225610:CDS
TTCTTCCTCCTACAATTAAC+CGG 0.390508 8_1:-91082056 None:intergenic
CCCTGCTCTTAAGCAATTTG+AGG 0.399232 8_1:-91083741 None:intergenic
TTCTTGCTCAAGATATTTCA+TGG 0.399762 8_1:+91082436 Msa1225610:CDS
GATGGCCTCCGGTTAATTGT+AGG 0.427386 8_1:+91082048 Msa1225610:CDS
GATCACGTGGTCCCCATTGA+TGG 0.439591 8_1:+91082107 Msa1225610:CDS
GAAACCCAAATATTAATCAA+TGG 0.447820 8_1:+91083849 Msa1225610:three_prime_UTR
CTGAGTGGCCAGGAGTTAAT+GGG 0.451365 8_1:-91081823 None:intergenic
GATGATGAAGAAGCTCTTGT+TGG 0.454535 8_1:+91082026 Msa1225610:CDS
TAATGGGAGGAGAGAAAGAG+TGG 0.454609 8_1:-91081807 None:intergenic
TCTCTCCTCCCATTAACTCC+TGG 0.458165 8_1:+91081815 Msa1225610:CDS
CATAGCTATTTATTAATGAA+AGG 0.459720 8_1:-91081571 None:intergenic
AGAAAGAGTGGGAAGGTTGG+TGG 0.462033 8_1:-91081795 None:intergenic
GAACTTGAAGTCTTAAACGA+TGG 0.468843 8_1:-91083788 None:intergenic
GCCTCAAATTGCTTAAGAGC+AGG 0.470661 8_1:+91083740 Msa1225610:CDS
AAACCCAAATATTAATCAAT+GGG 0.473163 8_1:+91083850 Msa1225610:three_prime_UTR
ATAGCTATTTATTAATGAAA+GGG 0.475872 8_1:-91081570 None:intergenic
ATGGTTCTCATGATAATCAT+AGG 0.480012 8_1:+91082126 Msa1225610:CDS
ATTATCATGAGAACCATCAA+TGG 0.488136 8_1:-91082120 None:intergenic
AGCTCTTGTTGGATGGCCTC+CGG 0.493311 8_1:+91082037 Msa1225610:CDS
TTACTTGGTGATGGTGGTAG+TGG 0.498349 8_1:-91081885 None:intergenic
TGATCAACAACAGTATGAAC+TGG 0.501567 8_1:+91082386 Msa1225610:CDS
TTGTCCATATTTCTCGGTGG+TGG 0.504778 8_1:+91083990 Msa1225610:three_prime_UTR
TTATCATGAGAACCATCAAT+GGG 0.508335 8_1:-91082119 None:intergenic
TATTAATTACTTGGTGATGG+TGG 0.510150 8_1:-91081891 None:intergenic
AAATTAACGTAGTCAGAAGT+TGG 0.516653 8_1:-91083916 None:intergenic
TAATATTAATTACTTGGTGA+TGG 0.522964 8_1:-91081894 None:intergenic
CGGACGAGAATTATTATAAG+TGG 0.529450 8_1:-91081681 None:intergenic
CTGGTTTATCAAGACAAAGA+AGG 0.557412 8_1:+91082405 Msa1225610:CDS
GGTTGAGAGTATGAAATGAA+TGG 0.558722 8_1:-91082211 None:intergenic
TCATGATCATCTGAGTGGCC+AGG 0.559365 8_1:-91081833 None:intergenic
GGAGGAGAGAAAGAGTGGGA+AGG 0.576479 8_1:-91081802 None:intergenic
AATGGGAGGAGAGAAAGAGT+GGG 0.579242 8_1:-91081806 None:intergenic
ATGAAGAAGCTCTTGTTGGA+TGG 0.580018 8_1:+91082030 Msa1225610:CDS
CCTCAAATTGCTTAAGAGCA+GGG 0.580023 8_1:+91083741 Msa1225610:CDS
TATCATGATTCAAAGAGAAG+TGG 0.584987 8_1:-91081727 None:intergenic
TACGTGAAGGTGAAAATGGA+AGG 0.594315 8_1:+91082152 Msa1225610:CDS
CTCAAATTGCTTAAGAGCAG+GGG 0.598831 8_1:+91083742 Msa1225610:CDS
GGCCTCCGGTTAATTGTAGG+AGG 0.613414 8_1:+91082051 Msa1225610:CDS
AGGTGTAGGAATAGCTCGAA+AGG 0.621460 8_1:+91082172 Msa1225610:CDS
TTAGTAGCAGCAATATCGTA+CGG 0.636596 8_1:-91081701 None:intergenic
GTGAGCAAAGCAAACAACGT+TGG 0.654677 8_1:-91083817 None:intergenic
TTCCTCCTACAATTAACCGG+AGG 0.665193 8_1:-91082053 None:intergenic
AAGGTGAAAATGGAAGGTGT+AGG 0.668997 8_1:+91082158 Msa1225610:CDS
TGGTTGTCCATATTTCTCGG+TGG 0.670450 8_1:+91083987 Msa1225610:three_prime_UTR
TAATCATAGGAATTACGTGA+AGG 0.675805 8_1:+91082139 Msa1225610:CDS
AGTGGCCAGGAGTTAATGGG+AGG 0.697461 8_1:-91081820 None:intergenic
TTGCTCAAGATATTTCATGG+AGG 0.720826 8_1:+91082439 Msa1225610:CDS
CATGATCATGATCATCTGAG+TGG 0.721603 8_1:-91081838 None:intergenic
AAATGATGTTGAAGATCACG+TGG 0.746908 8_1:+91082094 Msa1225610:CDS
TATCATGAGAACCATCAATG+GGG 0.763816 8_1:-91082118 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAGATAAAAATAAATTTG+AGG - chr8_1:91081463-91081482 None:intergenic 10.0%
!! AACTAATAATATTAATTACT+TGG - chr8_1:91081903-91081922 None:intergenic 10.0%
!! GTACATTAATATTATTTATA+TGG + chr8_1:91081957-91081976 Msa1225610:intron 10.0%
!! TAGAGATTAAAAAAAATATA+AGG + chr8_1:91082670-91082689 Msa1225610:intron 10.0%
!!! ATAAGAAAAATATTCTTTTA+AGG + chr8_1:91083017-91083036 Msa1225610:intron 10.0%
!! AATAAATGATGTATATAATT+TGG + chr8_1:91083047-91083066 Msa1225610:intron 10.0%
!! GTATAAGAATATAAATTATA+TGG - chr8_1:91083244-91083263 None:intergenic 10.0%
!!! TTTTTTCTTATATTTGAAAT+CGG + chr8_1:91083529-91083548 Msa1225610:intron 10.0%
!! TTCACATATATTAAAAAAAT+TGG - chr8_1:91083577-91083596 None:intergenic 10.0%
!! ATAGCTATTTATTAATGAAA+GGG - chr8_1:91081573-91081592 None:intergenic 15.0%
!!! ATTAGTAGTACTAATTATTT+TGG - chr8_1:91082299-91082318 None:intergenic 15.0%
!! TTCAATGAATGTTTATAATT+AGG - chr8_1:91082506-91082525 None:intergenic 15.0%
!!! ATTTTTCTTATATTTGAGAA+GGG - chr8_1:91083008-91083027 None:intergenic 15.0%
!!! TATTTTTCTTATATTTGAGA+AGG - chr8_1:91083009-91083028 None:intergenic 15.0%
!!! TTAATTTGTATCTAAAAAGT+TGG + chr8_1:91083884-91083903 Msa1225610:three_prime_UTR 15.0%
!! CATAGCTATTTATTAATGAA+AGG - chr8_1:91081574-91081593 None:intergenic 20.0%
!!! TAATATTAATTACTTGGTGA+TGG - chr8_1:91081897-91081916 None:intergenic 20.0%
!! AAGTACTAACATTGAAATAT+TGG - chr8_1:91081931-91081950 None:intergenic 20.0%
!! TTGAAAGATGACTTATAATT+AGG - chr8_1:91082549-91082568 None:intergenic 20.0%
!! AAAAAAAATATAAGGAGCAA+AGG + chr8_1:91082678-91082697 Msa1225610:intron 20.0%
!!! TTGGTTTTTTCTTTTTTGTT+TGG - chr8_1:91082718-91082737 None:intergenic 20.0%
!! AAAAAGAAAAAACCAACATT+AGG + chr8_1:91082722-91082741 Msa1225610:intron 20.0%
!!! TGTCTTTTTCTTATAAAGTA+AGG + chr8_1:91083363-91083382 Msa1225610:intron 20.0%
!!! GTCTTTTTCTTATAAAGTAA+GGG + chr8_1:91083364-91083383 Msa1225610:intron 20.0%
!! AAATGGAATGAAATAATCAT+TGG - chr8_1:91083412-91083431 None:intergenic 20.0%
!! TATTCAATAAACCTAAACAA+TGG + chr8_1:91083502-91083521 Msa1225610:intron 20.0%
!! GAAAAAAAAATCCATTGTTT+AGG - chr8_1:91083516-91083535 None:intergenic 20.0%
!! TATATGTGAAATATGAAATC+AGG + chr8_1:91083587-91083606 Msa1225610:intron 20.0%
!! ATATGTGAAATATGAAATCA+GGG + chr8_1:91083588-91083607 Msa1225610:intron 20.0%
!! AAACCCAAATATTAATCAAT+GGG + chr8_1:91083850-91083869 Msa1225610:three_prime_UTR 20.0%
!!! ATACCCATTGATTAATATTT+GGG - chr8_1:91083856-91083875 None:intergenic 20.0%
!!! AATACCCATTGATTAATATT+TGG - chr8_1:91083857-91083876 None:intergenic 20.0%
!!! ATTAATCAATGGGTATTTTT+TGG + chr8_1:91083860-91083879 Msa1225610:three_prime_UTR 20.0%
!!! TTAATCAATGGGTATTTTTT+GGG + chr8_1:91083861-91083880 Msa1225610:three_prime_UTR 20.0%
!!! AGTAGTAGTTCAATATTTTT+TGG + chr8_1:91083967-91083986 Msa1225610:three_prime_UTR 20.0%
! TCTCTTTGAATCATGATAAT+AGG + chr8_1:91081732-91081751 Msa1225610:CDS 25.0%
! TTAGTACTACTAATTAGTTG+AGG + chr8_1:91082305-91082324 Msa1225610:intron 25.0%
! GTATATATAGTGTATATGCA+CGG + chr8_1:91082327-91082346 Msa1225610:intron 25.0%
! TGTTTATAATTAGGCATACA+AGG - chr8_1:91082497-91082516 None:intergenic 25.0%
! AGTTTGCATTAAAATGTGTT+AGG + chr8_1:91082618-91082637 Msa1225610:intron 25.0%
!! AAAGTTGGAGTATTTATTGA+GGG - chr8_1:91083306-91083325 None:intergenic 25.0%
!! AAAAGTTGGAGTATTTATTG+AGG - chr8_1:91083307-91083326 None:intergenic 25.0%
! AAATATGAAATCAGGGTTTA+GGG + chr8_1:91083595-91083614 Msa1225610:intron 25.0%
! CAAACTTTCTCTAACAATTA+AGG + chr8_1:91083640-91083659 Msa1225610:intron 25.0%
! CTAAATAAAACTTGTGTGTT+TGG + chr8_1:91083688-91083707 Msa1225610:intron 25.0%
!! ATATTTGGGTTTCCAATTAA+AGG - chr8_1:91083842-91083861 None:intergenic 25.0%
! GAAACCCAAATATTAATCAA+TGG + chr8_1:91083849-91083868 Msa1225610:three_prime_UTR 25.0%
TATCATGATTCAAAGAGAAG+TGG - chr8_1:91081730-91081749 None:intergenic 30.0%
!! TATTAATTACTTGGTGATGG+TGG - chr8_1:91081894-91081913 None:intergenic 30.0%
TTATCATGAGAACCATCAAT+GGG - chr8_1:91082122-91082141 None:intergenic 30.0%
ATTATCATGAGAACCATCAA+TGG - chr8_1:91082123-91082142 None:intergenic 30.0%
ATGGTTCTCATGATAATCAT+AGG + chr8_1:91082126-91082145 Msa1225610:CDS 30.0%
TAATCATAGGAATTACGTGA+AGG + chr8_1:91082139-91082158 Msa1225610:CDS 30.0%
TCATGTAGTTGGAAATTAAC+AGG + chr8_1:91082357-91082376 Msa1225610:intron 30.0%
TTCTTGCTCAAGATATTTCA+TGG + chr8_1:91082436-91082455 Msa1225610:CDS 30.0%
TATCATTAATTAGTGCAAGC+TGG + chr8_1:91082466-91082485 Msa1225610:intron 30.0%
CATTAAAATGTGTTAGGAGT+TGG + chr8_1:91082624-91082643 Msa1225610:intron 30.0%
ACTTAACTAAGACCTAATGT+TGG - chr8_1:91082737-91082756 None:intergenic 30.0%
CATGTTAAGCAACCTAAAAA+GGG - chr8_1:91083195-91083214 None:intergenic 30.0%
ACATGTTAAGCAACCTAAAA+AGG - chr8_1:91083196-91083215 None:intergenic 30.0%
! AAGTGACACTCATTTTGTAA+CGG - chr8_1:91083272-91083291 None:intergenic 30.0%
AAATTGTGTGAGAGAAAAGT+TGG - chr8_1:91083321-91083340 None:intergenic 30.0%
GAAATATGAAATCAGGGTTT+AGG + chr8_1:91083594-91083613 Msa1225610:intron 30.0%
! AGGGTTTAGGGTTTATAATT+AGG + chr8_1:91083607-91083626 Msa1225610:intron 30.0%
! GGGTTTAGGGTTTATAATTA+GGG + chr8_1:91083608-91083627 Msa1225610:intron 30.0%
AAATTAACGTAGTCAGAAGT+TGG - chr8_1:91083919-91083938 None:intergenic 30.0%
!! TTTTGGTTGTCCATATTTCT+CGG + chr8_1:91083984-91084003 Msa1225610:three_prime_UTR 30.0%
CTCTCTACACAATCACAATA+TGG + chr8_1:91081634-91081653 Msa1225610:exon 35.0%
TCACAATATGGAGCTTCATT+TGG + chr8_1:91081646-91081665 Msa1225610:exon 35.0%
CACAATATGGAGCTTCATTT+GGG + chr8_1:91081647-91081666 Msa1225610:exon 35.0%
CGGACGAGAATTATTATAAG+TGG - chr8_1:91081684-91081703 None:intergenic 35.0%
TTAGTAGCAGCAATATCGTA+CGG - chr8_1:91081704-91081723 None:intergenic 35.0%
! ACGTAGTTTTTCTCAACTCT+TGG + chr8_1:91081757-91081776 Msa1225610:CDS 35.0%
TTCTTCCTCCTACAATTAAC+CGG - chr8_1:91082059-91082078 None:intergenic 35.0%
AAATGATGTTGAAGATCACG+TGG + chr8_1:91082094-91082113 Msa1225610:CDS 35.0%
TATCATGAGAACCATCAATG+GGG - chr8_1:91082121-91082140 None:intergenic 35.0%
GAATTACGTGAAGGTGAAAA+TGG + chr8_1:91082148-91082167 Msa1225610:CDS 35.0%
! GGTTGAGAGTATGAAATGAA+TGG - chr8_1:91082214-91082233 None:intergenic 35.0%
TACTCTCAACCAAACTTTGA+TGG + chr8_1:91082223-91082242 Msa1225610:CDS 35.0%
CAAACATGTCCATCAAAGTT+TGG - chr8_1:91082235-91082254 None:intergenic 35.0%
ACGGCATTAATTCATGTAGT+TGG + chr8_1:91082346-91082365 Msa1225610:intron 35.0%
TGATCAACAACAGTATGAAC+TGG + chr8_1:91082386-91082405 Msa1225610:CDS 35.0%
CTGGTTTATCAAGACAAAGA+AGG + chr8_1:91082405-91082424 Msa1225610:CDS 35.0%
ATCAAGACAAAGAAGGTGAT+TGG + chr8_1:91082412-91082431 Msa1225610:CDS 35.0%
TTGCTCAAGATATTTCATGG+AGG + chr8_1:91082439-91082458 Msa1225610:CDS 35.0%
AAAATGTGTTAGGAGTTGGA+AGG + chr8_1:91082628-91082647 Msa1225610:intron 35.0%
AAATATAAGGAGCAAAGGTG+TGG + chr8_1:91082683-91082702 Msa1225610:intron 35.0%
! ACAACAACCTCTTCTTTTCT+GGG - chr8_1:91082823-91082842 None:intergenic 35.0%
AAAAGAAGAGGTTGTTGTCA+TGG + chr8_1:91082825-91082844 Msa1225610:intron 35.0%
AGTGAAAGTCTATGTGAACT+AGG + chr8_1:91082863-91082882 Msa1225610:intron 35.0%
!!! CTAGGCATGGTAAGTTTTTT+TGG + chr8_1:91082881-91082900 Msa1225610:intron 35.0%
!! AATGTTAATTTGTGCCCTCA+AGG + chr8_1:91083072-91083091 Msa1225610:intron 35.0%
!! ATGTTAATTTGTGCCCTCAA+GGG + chr8_1:91083073-91083092 Msa1225610:intron 35.0%
! AATGCAAAGTTGCCCTTTTT+AGG + chr8_1:91083180-91083199 Msa1225610:intron 35.0%
!! TCATGTTAACTTGTCCCTAA+GGG - chr8_1:91083220-91083239 None:intergenic 35.0%
TTGGCACACAGATTAAGAAA+TGG - chr8_1:91083429-91083448 None:intergenic 35.0%
!! AAGCGACACTCATTTTGAAA+CGG + chr8_1:91083455-91083474 Msa1225610:intron 35.0%
GAACTTGAAGTCTTAAACGA+TGG - chr8_1:91083791-91083810 None:intergenic 35.0%
TTGCTTTGCTCACCTTTAAT+TGG + chr8_1:91083827-91083846 Msa1225610:three_prime_UTR 35.0%
CATGATCATGATCATCTGAG+TGG - chr8_1:91081841-91081860 None:intergenic 40.0%
GATGATGAAGAAGCTCTTGT+TGG + chr8_1:91082026-91082045 Msa1225610:CDS 40.0%
ATGAAGAAGCTCTTGTTGGA+TGG + chr8_1:91082030-91082049 Msa1225610:CDS 40.0%
TACGTGAAGGTGAAAATGGA+AGG + chr8_1:91082152-91082171 Msa1225610:CDS 40.0%
! AAGGTGAAAATGGAAGGTGT+AGG + chr8_1:91082158-91082177 Msa1225610:CDS 40.0%
AATGAAGCCCAGAAAAGAAG+AGG + chr8_1:91082813-91082832 Msa1225610:intron 40.0%
! GACAACAACCTCTTCTTTTC+TGG - chr8_1:91082824-91082843 None:intergenic 40.0%
AAGTCTATGTGAACTAGGCA+TGG + chr8_1:91082868-91082887 Msa1225610:intron 40.0%
TTGCTTAACATGTGCCCTTA+GGG + chr8_1:91083203-91083222 Msa1225610:intron 40.0%
!! GTCATGTTAACTTGTCCCTA+AGG - chr8_1:91083221-91083240 None:intergenic 40.0%
!! GACACTCATTTTGTAACGGA+AGG - chr8_1:91083268-91083287 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + chr8_1:91083459-91083478 Msa1225610:intron 40.0%
CCTCAAATTGCTTAAGAGCA+GGG + chr8_1:91083741-91083760 Msa1225610:CDS 40.0%
CTCAAATTGCTTAAGAGCAG+GGG + chr8_1:91083742-91083761 Msa1225610:CDS 40.0%
AATGGGAGGAGAGAAAGAGT+GGG - chr8_1:91081809-91081828 None:intergenic 45.0%
TAATGGGAGGAGAGAAAGAG+TGG - chr8_1:91081810-91081829 None:intergenic 45.0%
!! TTACTTGGTGATGGTGGTAG+TGG - chr8_1:91081888-91081907 None:intergenic 45.0%
TTCCTCCTACAATTAACCGG+AGG - chr8_1:91082056-91082075 None:intergenic 45.0%
AGGTGTAGGAATAGCTCGAA+AGG + chr8_1:91082172-91082191 Msa1225610:CDS 45.0%
TGTGTTAGGAGTTGGAAGGA+TGG + chr8_1:91082632-91082651 Msa1225610:intron 45.0%
GTGTTAGGAGTTGGAAGGAT+GGG + chr8_1:91082633-91082652 Msa1225610:intron 45.0%
TCCTTAACATGTGCCCTTGA+GGG - chr8_1:91083089-91083108 None:intergenic 45.0%
TTCCTTAACATGTGCCCTTG+AGG - chr8_1:91083090-91083109 None:intergenic 45.0%
GTTGCTTAACATGTGCCCTT+AGG + chr8_1:91083202-91083221 Msa1225610:intron 45.0%
!! ATGAGTGTCGCTTTACGCTT+TGG - chr8_1:91083448-91083467 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + chr8_1:91083458-91083477 Msa1225610:intron 45.0%
GCCTCAAATTGCTTAAGAGC+AGG + chr8_1:91083740-91083759 Msa1225610:CDS 45.0%
CCCTGCTCTTAAGCAATTTG+AGG - chr8_1:91083744-91083763 None:intergenic 45.0%
GTGAGCAAAGCAAACAACGT+TGG - chr8_1:91083820-91083839 None:intergenic 45.0%
TGGTTGTCCATATTTCTCGG+TGG + chr8_1:91083987-91084006 Msa1225610:three_prime_UTR 45.0%
TTGTCCATATTTCTCGGTGG+TGG + chr8_1:91083990-91084009 Msa1225610:three_prime_UTR 45.0%
TAGACCACCACCGAGAAATA+TGG - chr8_1:91083997-91084016 None:intergenic 45.0%
!! TTAATTTATTTGATTAATTT+AGG + chr8_1:91081994-91082013 Msa1225610:intron 5.0%
!! TATAAGAATATAAATTATAT+GGG - chr8_1:91083243-91083262 None:intergenic 5.0%
AGAAAGAGTGGGAAGGTTGG+TGG - chr8_1:91081798-91081817 None:intergenic 50.0%
GAGAGAAAGAGTGGGAAGGT+TGG - chr8_1:91081801-91081820 None:intergenic 50.0%
TCTCTCCTCCCATTAACTCC+TGG + chr8_1:91081815-91081834 Msa1225610:CDS 50.0%
CTGAGTGGCCAGGAGTTAAT+GGG - chr8_1:91081826-91081845 None:intergenic 50.0%
TCTGAGTGGCCAGGAGTTAA+TGG - chr8_1:91081827-91081846 None:intergenic 50.0%
TCATGATCATCTGAGTGGCC+AGG - chr8_1:91081836-91081855 None:intergenic 50.0%
GATGGCCTCCGGTTAATTGT+AGG + chr8_1:91082048-91082067 Msa1225610:CDS 50.0%
GGAGGAGAGAAAGAGTGGGA+AGG - chr8_1:91081805-91081824 None:intergenic 55.0%
AGTGGCCAGGAGTTAATGGG+AGG - chr8_1:91081823-91081842 None:intergenic 55.0%
AGCTCTTGTTGGATGGCCTC+CGG + chr8_1:91082037-91082056 Msa1225610:CDS 55.0%
GGCCTCCGGTTAATTGTAGG+AGG + chr8_1:91082051-91082070 Msa1225610:CDS 55.0%
GATCACGTGGTCCCCATTGA+TGG + chr8_1:91082107-91082126 Msa1225610:CDS 55.0%
! GCCCTCAAGGGCACATGTTA+AGG + chr8_1:91083085-91083104 Msa1225610:intron 55.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 91081451 91084017 91081451 ID=Msa1225610;Name=Msa1225610
chr8_1 mRNA 91081451 91084017 91081451 ID=Msa1225610-mRNA-1;Parent=Msa1225610;Name=Msa1225610-mRNA-1;_AED=0.10;_eAED=0.10;_QI=202|1|1|1|1|1|4|249|209
chr8_1 exon 91081451 91081903 91081451 ID=Msa1225610-mRNA-1:exon:33185;Parent=Msa1225610-mRNA-1
chr8_1 exon 91082016 91082260 91082016 ID=Msa1225610-mRNA-1:exon:33186;Parent=Msa1225610-mRNA-1
chr8_1 exon 91082379 91082460 91082379 ID=Msa1225610-mRNA-1:exon:33187;Parent=Msa1225610-mRNA-1
chr8_1 exon 91083717 91084017 91083717 ID=Msa1225610-mRNA-1:exon:33188;Parent=Msa1225610-mRNA-1
chr8_1 five_prime_UTR 91081451 91081652 91081451 ID=Msa1225610-mRNA-1:five_prime_utr;Parent=Msa1225610-mRNA-1
chr8_1 CDS 91081653 91081903 91081653 ID=Msa1225610-mRNA-1:cds;Parent=Msa1225610-mRNA-1
chr8_1 CDS 91082016 91082260 91082016 ID=Msa1225610-mRNA-1:cds;Parent=Msa1225610-mRNA-1
chr8_1 CDS 91082379 91082460 91082379 ID=Msa1225610-mRNA-1:cds;Parent=Msa1225610-mRNA-1
chr8_1 CDS 91083717 91083768 91083717 ID=Msa1225610-mRNA-1:cds;Parent=Msa1225610-mRNA-1
chr8_1 three_prime_UTR 91083769 91084017 91083769 ID=Msa1225610-mRNA-1:three_prime_utr;Parent=Msa1225610-mRNA-1
Gene Sequence

>Msa1225610

ATGGAGCTTCATTTGGGTCTTGCTCTCTCCACTTATAATAATTCTCGTCCGTACGATATTGCTGCTACTAATAGCCACTTCTCTTTGAATCATGATAATAGGAAACGTAGTTTTTCTCAACTCTTGGAGCATGCAGCAGAAACCACCAACCTTCCCACTCTTTCTCTCCTCCCATTAACTCCTGGCCACTCAGATGATCATGATCATGATGATCAACACTGCTCTCACAGCTCCACTACCACCATCACCAAGAGCAATGAAGATGATGAAGAAGCTCTTGTTGGATGGCCTCCGGTTAATTGTAGGAGGAAGAAAATTCGTTCTAATGAAAATGATGTTGAAGATCACGTGGTCCCCATTGATGGTTCTCATGATAATCATAGGAATTACGTGAAGGTGAAAATGGAAGGTGTAGGAATAGCTCGAAAGGTTAATCTTAGCATGCACCATTCATTTCATACTCTCAACCAAACTTTGATGGACATGTTTGAAAAATGTGATCATGATCAACAACAGTATGAACTGGTTTATCAAGACAAAGAAGGTGATTGGCTTCTTGCTCAAGATATTTCATGGAGAAGTTTCATTGAATGTGCGCAACGCCTCAAATTGCTTAAGAGCAGGGGATAG

Protein sequence

>Msa1225610

MELHLGLALSTYNNSRPYDIAATNSHFSLNHDNRKRSFSQLLEHAAETTNLPTLSLLPLTPGHSDDHDHDDQHCSHSSTTTITKSNEDDEEALVGWPPVNCRRKKIRSNENDVEDHVVPIDGSHDNHRNYVKVKMEGVGIARKVNLSMHHSFHTLNQTLMDMFEKCDHDQQQYELVYQDKEGDWLLAQDISWRSFIECAQRLKLLKSRG*