AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0290740


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0290740 MtrunA17_Chr2g0310191 95.506 267 9 1 1 264 1 267 0.0 511
Msa0290740 MtrunA17_Chr8g0357051 71.654 254 66 3 14 264 18 268 2.15e-133 377
Msa0290740 MtrunA17_Chr8g0348061 57.792 154 63 1 75 226 92 245 7.63e-65 202
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0290740 AT1G79510.2 65.091 275 85 6 1 264 1 275 6.76e-120 343
Msa0290740 AT1G79510.1 65.091 275 85 6 1 264 1 275 6.76e-120 343
Msa0290740 AT1G16320.1 59.489 274 100 6 1 264 1 273 4.27e-110 319
Msa0290740 AT2G46220.1 55.414 157 68 1 72 226 81 237 5.81e-65 203

Find 78 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTCTACAACTTAAAATTTC+TGG 0.074377 2_3:+38521650 None:intergenic
AAAAGTACAAATTGATCTTC+TGG 0.216595 2_3:-38522109 Msa0290740:CDS
GACCCTTTGAACACATTTAC+TGG 0.221962 2_3:-38522137 Msa0290740:CDS
AGGCACTTCAAAGTATAAAT+TGG 0.231544 2_3:-38521940 Msa0290740:CDS
AAAACCATTGAAGCATTAAA+AGG 0.244066 2_3:-38523030 Msa0290740:five_prime_UTR
TATTAAACCAGTTTCAGTTT+TGG 0.296641 2_3:-38521856 Msa0290740:CDS
ATTGAAGCATTAAAAGGTTA+TGG 0.297451 2_3:-38523024 Msa0290740:exon
AATATTGAGTTTCTCGATAT+CGG 0.305671 2_3:-38521525 Msa0290740:three_prime_UTR
TTATAAGAGTGTATATAAAT+AGG 0.322094 2_3:-38521415 Msa0290740:three_prime_UTR
AGAAAATGTGAAGTAGGTTT+TGG 0.326406 2_3:+38522918 None:intergenic
TTCATGGATAACTTTATATA+AGG 0.327641 2_3:-38521763 Msa0290740:CDS
TTCTGGGCATTGAGGTTTCA+TGG 0.332313 2_3:-38522092 Msa0290740:CDS
TAACTTTATATAAGGCAGTT+AGG 0.342291 2_3:-38521755 Msa0290740:CDS
TGTATAGAATCAAGCTTAAT+AGG 0.349089 2_3:-38521485 Msa0290740:three_prime_UTR
AGGGCGTGCCGCGTGTCCCT+TGG 0.359335 2_3:-38521983 Msa0290740:CDS
TTGGTGAAGAGGTTTGTCTT+TGG 0.362955 2_3:+38522953 None:intergenic
GAGTTGGGAGATAAGGTTGT+AGG 0.369415 2_3:+38522985 None:intergenic
ACAAAATCCAAAACTGAAAC+TGG 0.373146 2_3:+38521849 None:intergenic
GGGAGATAAGGTTGTAGGTT+TGG 0.374951 2_3:+38522990 None:intergenic
GGGCGTGCCGCGTGTCCCTT+GGG 0.391041 2_3:-38521982 Msa0290740:CDS
CGAAGAATGTGATATGGATT+AGG 0.391674 2_3:-38522016 Msa0290740:CDS
TTTGATTGAGTTGGGAGATA+AGG 0.392649 2_3:+38522978 None:intergenic
ATGGATTAGGTGGAAACTTA+AGG 0.394506 2_3:-38522003 Msa0290740:CDS
TGGAGTTTGAAGGGTGGCTA+AGG 0.408366 2_3:+38522863 None:intergenic
AAAGTACAAATTGATCTTCT+GGG 0.411012 2_3:-38522108 Msa0290740:CDS
TGGATGTCTACTCTTCTTCA+TGG 0.415651 2_3:-38521779 Msa0290740:CDS
ACTCGTATATATAAAGTTGT+AGG 0.417731 2_3:-38521623 Msa0290740:three_prime_UTR
TTGACATAGAATTCATCCTT+TGG 0.425313 2_3:+38522795 None:intergenic
AATGTAGGGTTTGGACTAGC+AGG 0.427331 2_3:+38521816 None:intergenic
AACTTTATATAAGGCAGTTA+GGG 0.433549 2_3:-38521754 Msa0290740:CDS
AGGTCTTTGATGAAGATCAT+AGG 0.436047 2_3:+38522735 None:intergenic
TGTTTATCTTGAACACTTGA+CGG 0.437362 2_3:+38522822 None:intergenic
AACCTTCGAAGAATGTGATA+TGG 0.437736 2_3:-38522022 Msa0290740:CDS
GAAGTTGCTCATTCTGTTGT+TGG 0.439021 2_3:-38521374 Msa0290740:three_prime_UTR
TGAACATAAAGTTGATAACT+TGG 0.441163 2_3:-38521898 Msa0290740:CDS
TGGATTAGGTGGAAACTTAA+GGG 0.463830 2_3:-38522002 Msa0290740:CDS
ATTCCAGTAAATGTGTTCAA+AGG 0.467787 2_3:+38522134 None:intergenic
AGAAGAAGAATCAGATGAAG+TGG 0.472139 2_3:+38522887 None:intergenic
TTCCAGTAAATGTGTTCAAA+GGG 0.481927 2_3:+38522135 None:intergenic
ACCTCAATTATGATATCTAT+AGG 0.485916 2_3:-38522716 Msa0290740:intron
AGGGAGACTTTGAAACAAGA+AGG 0.486403 2_3:-38521735 Msa0290740:CDS
GATACAAGAAAATGTGAAGT+AGG 0.489505 2_3:+38522912 None:intergenic
TTGAGTGATGAAGCAATTTG+AGG 0.494803 2_3:+38523085 None:intergenic
TTATATATATTGTTATACAT+TGG 0.498168 2_3:+38521551 None:intergenic
GGTCAGATATAATGAATTTG+TGG 0.498813 2_3:-38521464 Msa0290740:three_prime_UTR
GGAGTTTGAAGGGTGGCTAA+GGG 0.505819 2_3:+38522864 None:intergenic
AATTGATCTTCTGGGCATTG+AGG 0.508643 2_3:-38522100 Msa0290740:CDS
GAAGCTAAAGGAGAATTTCA+AGG 0.512138 2_3:-38521960 Msa0290740:CDS
AAGTATAAATTGGACAAGAA+TGG 0.514460 2_3:-38521930 Msa0290740:CDS
ATTTGTGGCATAGCATGAAA+TGG 0.514904 2_3:-38521449 Msa0290740:three_prime_UTR
ACCTATAGATATCATAATTG+AGG 0.529058 2_3:+38522715 None:intergenic
GATGAATTCTATGTCAACCT+TGG 0.529105 2_3:-38522789 Msa0290740:CDS
GTTTCTCGATATCGGCTAAG+TGG 0.547890 2_3:-38521517 Msa0290740:three_prime_UTR
CGTGTCCCTTGGGAAGCTAA+AGG 0.549445 2_3:-38521972 Msa0290740:CDS
AATTCTCCTTTAGCTTCCCA+AGG 0.554730 2_3:+38521966 None:intergenic
TTGTGAAGTTGGAGTTTGAA+GGG 0.561912 2_3:+38522854 None:intergenic
CTTGTGAAGTTGGAGTTTGA+AGG 0.564715 2_3:+38522853 None:intergenic
ATAGATAATACTTACGAGCA+TGG 0.565339 2_3:+38521684 None:intergenic
ATCCATATCACATTCTTCGA+AGG 0.567194 2_3:+38522020 None:intergenic
GTTGCTCATTCTGTTGTTGG+AGG 0.574208 2_3:-38521371 Msa0290740:three_prime_UTR
GGTGTGTTAACTTGTGAAGT+TGG 0.574807 2_3:+38522843 None:intergenic
AGCTTGATTCTATACACGGT+CGG 0.576831 2_3:+38521492 None:intergenic
AGAATGTGATATGGATTAGG+TGG 0.583307 2_3:-38522013 Msa0290740:CDS
GAAGAAGAGTAGACATCCAC+AGG 0.583593 2_3:+38521783 None:intergenic
GGGAGACTTTGAAACAAGAA+GGG 0.595464 2_3:-38521734 Msa0290740:CDS
GAGTTCTAACAGCAAGTCCA+AGG 0.595497 2_3:+38522772 None:intergenic
GATGAAAGAGTTTGGTGAAG+AGG 0.606204 2_3:+38522942 None:intergenic
AGAGTGTATATAAATAGGCA+AGG 0.608791 2_3:-38521410 Msa0290740:three_prime_UTR
GGGAGTTTGCTACCACAAGA+TGG 0.611323 2_3:-38521714 Msa0290740:CDS
ATTCTCCTTTAGCTTCCCAA+GGG 0.617667 2_3:+38521967 None:intergenic
ATGTAGGGTTTGGACTAGCA+GGG 0.639151 2_3:+38521817 None:intergenic
ATTAAGCTTGATTCTATACA+CGG 0.641949 2_3:+38521488 None:intergenic
TTAGCTTCCCAAGGGACACG+CGG 0.642123 2_3:+38521975 None:intergenic
CACTTGATGTATATAGAGTG+TGG 0.642892 2_3:-38522046 Msa0290740:CDS
ATGTACAGTATAGTACATGT+TGG 0.643565 2_3:-38521579 Msa0290740:three_prime_UTR
TCAAGATAAACAGCTTCCAA+AGG 0.645111 2_3:-38522811 Msa0290740:CDS
CATGGAGCTAGACCATCTTG+TGG 0.685164 2_3:+38521702 None:intergenic
TGAAGTTGGAGTTTGAAGGG+TGG 0.695576 2_3:+38522857 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATATATATTGTTATACAT+TGG + chr2_3:38522915-38522934 None:intergenic 10.0%
!! TTATATATATTGTTATACAT+TGG + chr2_3:38522915-38522934 None:intergenic 10.0%
!! AAAAAAGATGTTATAAGAAA+TGG + chr2_3:38521801-38521820 None:intergenic 15.0%
!! TATTTAATTGTACTATATAC+AGG - chr2_3:38521920-38521939 Msa0290740:CDS 15.0%
!! TATCAATAGTTTAATACTAT+TGG + chr2_3:38522143-38522162 None:intergenic 15.0%
!!! TTATAAGAGTGTATATAAAT+AGG - chr2_3:38523048-38523067 Msa0290740:five_prime_UTR 15.0%
!! AAAAAAGATGTTATAAGAAA+TGG + chr2_3:38521801-38521820 None:intergenic 15.0%
!! TATTTAATTGTACTATATAC+AGG - chr2_3:38521920-38521939 Msa0290740:CDS 15.0%
!! TATCAATAGTTTAATACTAT+TGG + chr2_3:38522143-38522162 None:intergenic 15.0%
!!! TTATAAGAGTGTATATAAAT+AGG - chr2_3:38523048-38523067 Msa0290740:five_prime_UTR 15.0%
!! TGTTAAATAGGCTTATAATA+GGG + chr2_3:38521871-38521890 None:intergenic 20.0%
!! TTACACATTAAGTGTTAAAT+AGG + chr2_3:38521883-38521902 None:intergenic 20.0%
!! GTTTATAAAATGAGCTTATT+AGG - chr2_3:38522235-38522254 Msa0290740:intron 20.0%
!!! TTATTAGGTTGTGAATTTTA+AGG - chr2_3:38522250-38522269 Msa0290740:intron 20.0%
!!! TTGAAATTTGATCAATTTTC+AGG - chr2_3:38522285-38522304 Msa0290740:intron 20.0%
!!! TGAAATTTGATCAATTTTCA+GGG - chr2_3:38522286-38522305 Msa0290740:intron 20.0%
!!! GAAACTGGTTTAATATTTTT+GGG + chr2_3:38522602-38522621 None:intergenic 20.0%
!!! TGAAACTGGTTTAATATTTT+TGG + chr2_3:38522603-38522622 None:intergenic 20.0%
!! TTCATGGATAACTTTATATA+AGG - chr2_3:38522700-38522719 Msa0290740:intron 20.0%
!! TGTTAAATAGGCTTATAATA+GGG + chr2_3:38521871-38521890 None:intergenic 20.0%
!! TTACACATTAAGTGTTAAAT+AGG + chr2_3:38521883-38521902 None:intergenic 20.0%
!! GTTTATAAAATGAGCTTATT+AGG - chr2_3:38522235-38522254 Msa0290740:intron 20.0%
!!! TTATTAGGTTGTGAATTTTA+AGG - chr2_3:38522250-38522269 Msa0290740:intron 20.0%
!!! TTGAAATTTGATCAATTTTC+AGG - chr2_3:38522285-38522304 Msa0290740:intron 20.0%
!!! TGAAATTTGATCAATTTTCA+GGG - chr2_3:38522286-38522305 Msa0290740:intron 20.0%
!!! GAAACTGGTTTAATATTTTT+GGG + chr2_3:38522602-38522621 None:intergenic 20.0%
!!! TGAAACTGGTTTAATATTTT+TGG + chr2_3:38522603-38522622 None:intergenic 20.0%
!! TTCATGGATAACTTTATATA+AGG - chr2_3:38522700-38522719 Msa0290740:intron 20.0%
!! AAAACCATTGAAGCATTAAA+AGG - chr2_3:38521433-38521452 Msa0290740:three_prime_UTR 25.0%
!! ATAACCTTTTAATGCTTCAA+TGG + chr2_3:38521440-38521459 None:intergenic 25.0%
!! ATTGAAGCATTAAAAGGTTA+TGG - chr2_3:38521439-38521458 Msa0290740:three_prime_UTR 25.0%
! ACCTCAATTATGATATCTAT+AGG - chr2_3:38521747-38521766 Msa0290740:CDS 25.0%
! ACCTATAGATATCATAATTG+AGG + chr2_3:38521751-38521770 None:intergenic 25.0%
! TTATAAGAAATGGTGAAATG+AGG + chr2_3:38521791-38521810 None:intergenic 25.0%
! GTGTTAAATAGGCTTATAAT+AGG + chr2_3:38521872-38521891 None:intergenic 25.0%
!!! AGACAAGTTTTTTTATGCTT+AGG - chr2_3:38522026-38522045 Msa0290740:CDS 25.0%
!! AAAAGTACAAATTGATCTTC+TGG - chr2_3:38522354-38522373 Msa0290740:intron 25.0%
! AAAGTACAAATTGATCTTCT+GGG - chr2_3:38522355-38522374 Msa0290740:intron 25.0%
! AAGTATAAATTGGACAAGAA+TGG - chr2_3:38522533-38522552 Msa0290740:intron 25.0%
!!! TGAACATAAAGTTGATAACT+TGG - chr2_3:38522565-38522584 Msa0290740:intron 25.0%
!! TATTAAACCAGTTTCAGTTT+TGG - chr2_3:38522607-38522626 Msa0290740:intron 25.0%
! TAACTTTATATAAGGCAGTT+AGG - chr2_3:38522708-38522727 Msa0290740:intron 25.0%
! AACTTTATATAAGGCAGTTA+GGG - chr2_3:38522709-38522728 Msa0290740:intron 25.0%
! ACTCGTATATATAAAGTTGT+AGG - chr2_3:38522840-38522859 Msa0290740:CDS 25.0%
! AATATTGAGTTTCTCGATAT+CGG - chr2_3:38522938-38522957 Msa0290740:CDS 25.0%
! ATTAAGCTTGATTCTATACA+CGG + chr2_3:38522978-38522997 None:intergenic 25.0%
! TGTATAGAATCAAGCTTAAT+AGG - chr2_3:38522978-38522997 Msa0290740:CDS 25.0%
!! AAAACCATTGAAGCATTAAA+AGG - chr2_3:38521433-38521452 Msa0290740:three_prime_UTR 25.0%
!! ATAACCTTTTAATGCTTCAA+TGG + chr2_3:38521440-38521459 None:intergenic 25.0%
!! ATTGAAGCATTAAAAGGTTA+TGG - chr2_3:38521439-38521458 Msa0290740:three_prime_UTR 25.0%
! ACCTCAATTATGATATCTAT+AGG - chr2_3:38521747-38521766 Msa0290740:CDS 25.0%
! ACCTATAGATATCATAATTG+AGG + chr2_3:38521751-38521770 None:intergenic 25.0%
! TTATAAGAAATGGTGAAATG+AGG + chr2_3:38521791-38521810 None:intergenic 25.0%
! GTGTTAAATAGGCTTATAAT+AGG + chr2_3:38521872-38521891 None:intergenic 25.0%
!!! AGACAAGTTTTTTTATGCTT+AGG - chr2_3:38522026-38522045 Msa0290740:CDS 25.0%
!! AAAAGTACAAATTGATCTTC+TGG - chr2_3:38522354-38522373 Msa0290740:intron 25.0%
! AAAGTACAAATTGATCTTCT+GGG - chr2_3:38522355-38522374 Msa0290740:intron 25.0%
! AAGTATAAATTGGACAAGAA+TGG - chr2_3:38522533-38522552 Msa0290740:intron 25.0%
!!! TGAACATAAAGTTGATAACT+TGG - chr2_3:38522565-38522584 Msa0290740:intron 25.0%
!! TATTAAACCAGTTTCAGTTT+TGG - chr2_3:38522607-38522626 Msa0290740:intron 25.0%
! TAACTTTATATAAGGCAGTT+AGG - chr2_3:38522708-38522727 Msa0290740:intron 25.0%
! AACTTTATATAAGGCAGTTA+GGG - chr2_3:38522709-38522728 Msa0290740:intron 25.0%
! ACTCGTATATATAAAGTTGT+AGG - chr2_3:38522840-38522859 Msa0290740:CDS 25.0%
! AATATTGAGTTTCTCGATAT+CGG - chr2_3:38522938-38522957 Msa0290740:CDS 25.0%
! ATTAAGCTTGATTCTATACA+CGG + chr2_3:38522978-38522997 None:intergenic 25.0%
! TGTATAGAATCAAGCTTAAT+AGG - chr2_3:38522978-38522997 Msa0290740:CDS 25.0%
!!! CTTTGGATTTTGATTGAGTT+GGG + chr2_3:38521496-38521515 None:intergenic 30.0%
!!! TCTTTGGATTTTGATTGAGT+TGG + chr2_3:38521497-38521516 None:intergenic 30.0%
! AGAAAATGTGAAGTAGGTTT+TGG + chr2_3:38521548-38521567 None:intergenic 30.0%
GATACAAGAAAATGTGAAGT+AGG + chr2_3:38521554-38521573 None:intergenic 30.0%
TGTTTATCTTGAACACTTGA+CGG + chr2_3:38521644-38521663 None:intergenic 30.0%
TTGACATAGAATTCATCCTT+TGG + chr2_3:38521671-38521690 None:intergenic 30.0%
AATTGTACTATATACAGGAC+CGG - chr2_3:38521925-38521944 Msa0290740:CDS 30.0%
! CAGGGATGATATAACATTTT+TGG - chr2_3:38522304-38522323 Msa0290740:intron 30.0%
TTCCAGTAAATGTGTTCAAA+GGG + chr2_3:38522331-38522350 None:intergenic 30.0%
ATTCCAGTAAATGTGTTCAA+AGG + chr2_3:38522332-38522351 None:intergenic 30.0%
AGGCACTTCAAAGTATAAAT+TGG - chr2_3:38522523-38522542 Msa0290740:intron 30.0%
ACAAAATCCAAAACTGAAAC+TGG + chr2_3:38522617-38522636 None:intergenic 30.0%
ATAGATAATACTTACGAGCA+TGG + chr2_3:38522782-38522801 None:intergenic 30.0%
CCTCTACAACTTAAAATTTC+TGG + chr2_3:38522816-38522835 None:intergenic 30.0%
!!! CCAGAAATTTTAAGTTGTAG+AGG - chr2_3:38522813-38522832 Msa0290740:CDS 30.0%
ATGTACAGTATAGTACATGT+TGG - chr2_3:38522884-38522903 Msa0290740:CDS 30.0%
GGTCAGATATAATGAATTTG+TGG - chr2_3:38522999-38523018 Msa0290740:CDS 30.0%
AGAGTGTATATAAATAGGCA+AGG - chr2_3:38523053-38523072 Msa0290740:five_prime_UTR 30.0%
!!! CTTTGGATTTTGATTGAGTT+GGG + chr2_3:38521496-38521515 None:intergenic 30.0%
!!! TCTTTGGATTTTGATTGAGT+TGG + chr2_3:38521497-38521516 None:intergenic 30.0%
! AGAAAATGTGAAGTAGGTTT+TGG + chr2_3:38521548-38521567 None:intergenic 30.0%
GATACAAGAAAATGTGAAGT+AGG + chr2_3:38521554-38521573 None:intergenic 30.0%
TGTTTATCTTGAACACTTGA+CGG + chr2_3:38521644-38521663 None:intergenic 30.0%
TTGACATAGAATTCATCCTT+TGG + chr2_3:38521671-38521690 None:intergenic 30.0%
AATTGTACTATATACAGGAC+CGG - chr2_3:38521925-38521944 Msa0290740:CDS 30.0%
! CAGGGATGATATAACATTTT+TGG - chr2_3:38522304-38522323 Msa0290740:intron 30.0%
TTCCAGTAAATGTGTTCAAA+GGG + chr2_3:38522331-38522350 None:intergenic 30.0%
ATTCCAGTAAATGTGTTCAA+AGG + chr2_3:38522332-38522351 None:intergenic 30.0%
AGGCACTTCAAAGTATAAAT+TGG - chr2_3:38522523-38522542 Msa0290740:intron 30.0%
ACAAAATCCAAAACTGAAAC+TGG + chr2_3:38522617-38522636 None:intergenic 30.0%
ATAGATAATACTTACGAGCA+TGG + chr2_3:38522782-38522801 None:intergenic 30.0%
CCTCTACAACTTAAAATTTC+TGG + chr2_3:38522816-38522835 None:intergenic 30.0%
!!! CCAGAAATTTTAAGTTGTAG+AGG - chr2_3:38522813-38522832 Msa0290740:CDS 30.0%
ATGTACAGTATAGTACATGT+TGG - chr2_3:38522884-38522903 Msa0290740:CDS 30.0%
GGTCAGATATAATGAATTTG+TGG - chr2_3:38522999-38523018 Msa0290740:CDS 30.0%
AGAGTGTATATAAATAGGCA+AGG - chr2_3:38523053-38523072 Msa0290740:five_prime_UTR 30.0%
TTGAGTGATGAAGCAATTTG+AGG + chr2_3:38521381-38521400 None:intergenic 35.0%
!! TTTGATTGAGTTGGGAGATA+AGG + chr2_3:38521488-38521507 None:intergenic 35.0%
!!! GTTTTGGTGATGAAAGAGTT+TGG + chr2_3:38521532-38521551 None:intergenic 35.0%
AGAAGAAGAATCAGATGAAG+TGG + chr2_3:38521579-38521598 None:intergenic 35.0%
TTGTGAAGTTGGAGTTTGAA+GGG + chr2_3:38521612-38521631 None:intergenic 35.0%
TCAAGATAAACAGCTTCCAA+AGG - chr2_3:38521652-38521671 Msa0290740:three_prime_UTR 35.0%
GATGAATTCTATGTCAACCT+TGG - chr2_3:38521674-38521693 Msa0290740:three_prime_UTR 35.0%
AGGTCTTTGATGAAGATCAT+AGG + chr2_3:38521731-38521750 None:intergenic 35.0%
!!! TGTTTTGAAAACTCGATGTC+CGG + chr2_3:38521947-38521966 None:intergenic 35.0%
TTATGCTTAGGAGTTGAACT+TGG - chr2_3:38522038-38522057 Msa0290740:CDS 35.0%
CACTTGATGTATATAGAGTG+TGG - chr2_3:38522417-38522436 Msa0290740:intron 35.0%
AACCTTCGAAGAATGTGATA+TGG - chr2_3:38522441-38522460 Msa0290740:intron 35.0%
ATCCATATCACATTCTTCGA+AGG + chr2_3:38522446-38522465 None:intergenic 35.0%
CGAAGAATGTGATATGGATT+AGG - chr2_3:38522447-38522466 Msa0290740:intron 35.0%
!! AGAATGTGATATGGATTAGG+TGG - chr2_3:38522450-38522469 Msa0290740:intron 35.0%
!! ATGGATTAGGTGGAAACTTA+AGG - chr2_3:38522460-38522479 Msa0290740:intron 35.0%
! TGGATTAGGTGGAAACTTAA+GGG - chr2_3:38522461-38522480 Msa0290740:intron 35.0%
GAAGCTAAAGGAGAATTTCA+AGG - chr2_3:38522503-38522522 Msa0290740:intron 35.0%
! TCCAAACCCTACATTTTTGT+GGG - chr2_3:38522655-38522674 Msa0290740:intron 35.0%
ATTTGTGGCATAGCATGAAA+TGG - chr2_3:38523014-38523033 Msa0290740:exon 35.0%
TTGAGTGATGAAGCAATTTG+AGG + chr2_3:38521381-38521400 None:intergenic 35.0%
!! TTTGATTGAGTTGGGAGATA+AGG + chr2_3:38521488-38521507 None:intergenic 35.0%
!!! GTTTTGGTGATGAAAGAGTT+TGG + chr2_3:38521532-38521551 None:intergenic 35.0%
AGAAGAAGAATCAGATGAAG+TGG + chr2_3:38521579-38521598 None:intergenic 35.0%
TTGTGAAGTTGGAGTTTGAA+GGG + chr2_3:38521612-38521631 None:intergenic 35.0%
TCAAGATAAACAGCTTCCAA+AGG - chr2_3:38521652-38521671 Msa0290740:three_prime_UTR 35.0%
GATGAATTCTATGTCAACCT+TGG - chr2_3:38521674-38521693 Msa0290740:three_prime_UTR 35.0%
AGGTCTTTGATGAAGATCAT+AGG + chr2_3:38521731-38521750 None:intergenic 35.0%
!!! TGTTTTGAAAACTCGATGTC+CGG + chr2_3:38521947-38521966 None:intergenic 35.0%
TTATGCTTAGGAGTTGAACT+TGG - chr2_3:38522038-38522057 Msa0290740:CDS 35.0%
CACTTGATGTATATAGAGTG+TGG - chr2_3:38522417-38522436 Msa0290740:intron 35.0%
AACCTTCGAAGAATGTGATA+TGG - chr2_3:38522441-38522460 Msa0290740:intron 35.0%
ATCCATATCACATTCTTCGA+AGG + chr2_3:38522446-38522465 None:intergenic 35.0%
CGAAGAATGTGATATGGATT+AGG - chr2_3:38522447-38522466 Msa0290740:intron 35.0%
!! AGAATGTGATATGGATTAGG+TGG - chr2_3:38522450-38522469 Msa0290740:intron 35.0%
!! ATGGATTAGGTGGAAACTTA+AGG - chr2_3:38522460-38522479 Msa0290740:intron 35.0%
! TGGATTAGGTGGAAACTTAA+GGG - chr2_3:38522461-38522480 Msa0290740:intron 35.0%
GAAGCTAAAGGAGAATTTCA+AGG - chr2_3:38522503-38522522 Msa0290740:intron 35.0%
! TCCAAACCCTACATTTTTGT+GGG - chr2_3:38522655-38522674 Msa0290740:intron 35.0%
ATTTGTGGCATAGCATGAAA+TGG - chr2_3:38523014-38523033 Msa0290740:exon 35.0%
TTGGTGAAGAGGTTTGTCTT+TGG + chr2_3:38521513-38521532 None:intergenic 40.0%
! GATGAAAGAGTTTGGTGAAG+AGG + chr2_3:38521524-38521543 None:intergenic 40.0%
CTTGTGAAGTTGGAGTTTGA+AGG + chr2_3:38521613-38521632 None:intergenic 40.0%
!! GGTGTGTTAACTTGTGAAGT+TGG + chr2_3:38521623-38521642 None:intergenic 40.0%
GACCCTTTGAACACATTTAC+TGG - chr2_3:38522326-38522345 Msa0290740:intron 40.0%
! AATTGATCTTCTGGGCATTG+AGG - chr2_3:38522363-38522382 Msa0290740:intron 40.0%
! ATTCTCCTTTAGCTTCCCAA+GGG + chr2_3:38522499-38522518 None:intergenic 40.0%
! AATTCTCCTTTAGCTTCCCA+AGG + chr2_3:38522500-38522519 None:intergenic 40.0%
! GTCCAAACCCTACATTTTTG+TGG - chr2_3:38522654-38522673 Msa0290740:intron 40.0%
! CCAAACCCTACATTTTTGTG+GGG - chr2_3:38522656-38522675 Msa0290740:intron 40.0%
TGGATGTCTACTCTTCTTCA+TGG - chr2_3:38522684-38522703 Msa0290740:intron 40.0%
!! AGGGAGACTTTGAAACAAGA+AGG - chr2_3:38522728-38522747 Msa0290740:CDS 40.0%
!! GGGAGACTTTGAAACAAGAA+GGG - chr2_3:38522729-38522748 Msa0290740:CDS 40.0%
AGCTTGATTCTATACACGGT+CGG + chr2_3:38522974-38522993 None:intergenic 40.0%
GAAGTTGCTCATTCTGTTGT+TGG - chr2_3:38523089-38523108 Msa0290740:five_prime_UTR 40.0%
TTGGTGAAGAGGTTTGTCTT+TGG + chr2_3:38521513-38521532 None:intergenic 40.0%
! GATGAAAGAGTTTGGTGAAG+AGG + chr2_3:38521524-38521543 None:intergenic 40.0%
CTTGTGAAGTTGGAGTTTGA+AGG + chr2_3:38521613-38521632 None:intergenic 40.0%
!! GGTGTGTTAACTTGTGAAGT+TGG + chr2_3:38521623-38521642 None:intergenic 40.0%
GACCCTTTGAACACATTTAC+TGG - chr2_3:38522326-38522345 Msa0290740:intron 40.0%
! AATTGATCTTCTGGGCATTG+AGG - chr2_3:38522363-38522382 Msa0290740:intron 40.0%
! ATTCTCCTTTAGCTTCCCAA+GGG + chr2_3:38522499-38522518 None:intergenic 40.0%
! AATTCTCCTTTAGCTTCCCA+AGG + chr2_3:38522500-38522519 None:intergenic 40.0%
! GTCCAAACCCTACATTTTTG+TGG - chr2_3:38522654-38522673 Msa0290740:intron 40.0%
! CCAAACCCTACATTTTTGTG+GGG - chr2_3:38522656-38522675 Msa0290740:intron 40.0%
TGGATGTCTACTCTTCTTCA+TGG - chr2_3:38522684-38522703 Msa0290740:intron 40.0%
!! AGGGAGACTTTGAAACAAGA+AGG - chr2_3:38522728-38522747 Msa0290740:CDS 40.0%
!! GGGAGACTTTGAAACAAGAA+GGG - chr2_3:38522729-38522748 Msa0290740:CDS 40.0%
AGCTTGATTCTATACACGGT+CGG + chr2_3:38522974-38522993 None:intergenic 40.0%
GAAGTTGCTCATTCTGTTGT+TGG - chr2_3:38523089-38523108 Msa0290740:five_prime_UTR 40.0%
GGGAGATAAGGTTGTAGGTT+TGG + chr2_3:38521476-38521495 None:intergenic 45.0%
GAGTTGGGAGATAAGGTTGT+AGG + chr2_3:38521481-38521500 None:intergenic 45.0%
TGAAGTTGGAGTTTGAAGGG+TGG + chr2_3:38521609-38521628 None:intergenic 45.0%
! GAGTTCTAACAGCAAGTCCA+AGG + chr2_3:38521694-38521713 None:intergenic 45.0%
!! TTCTGGGCATTGAGGTTTCA+TGG - chr2_3:38522371-38522390 Msa0290740:intron 45.0%
!! ATGTAGGGTTTGGACTAGCA+GGG + chr2_3:38522649-38522668 None:intergenic 45.0%
!! AATGTAGGGTTTGGACTAGC+AGG + chr2_3:38522650-38522669 None:intergenic 45.0%
CCCCACAAAAATGTAGGGTT+TGG + chr2_3:38522659-38522678 None:intergenic 45.0%
CAGGACCCCACAAAAATGTA+GGG + chr2_3:38522664-38522683 None:intergenic 45.0%
ACAGGACCCCACAAAAATGT+AGG + chr2_3:38522665-38522684 None:intergenic 45.0%
! TACATTTTTGTGGGGTCCTG+TGG - chr2_3:38522664-38522683 Msa0290740:intron 45.0%
GAAGAAGAGTAGACATCCAC+AGG + chr2_3:38522683-38522702 None:intergenic 45.0%
! GTTTCTCGATATCGGCTAAG+TGG - chr2_3:38522946-38522965 Msa0290740:CDS 45.0%
GTTGCTCATTCTGTTGTTGG+AGG - chr2_3:38523092-38523111 Msa0290740:five_prime_UTR 45.0%
GGGAGATAAGGTTGTAGGTT+TGG + chr2_3:38521476-38521495 None:intergenic 45.0%
GAGTTGGGAGATAAGGTTGT+AGG + chr2_3:38521481-38521500 None:intergenic 45.0%
TGAAGTTGGAGTTTGAAGGG+TGG + chr2_3:38521609-38521628 None:intergenic 45.0%
! GAGTTCTAACAGCAAGTCCA+AGG + chr2_3:38521694-38521713 None:intergenic 45.0%
!! TTCTGGGCATTGAGGTTTCA+TGG - chr2_3:38522371-38522390 Msa0290740:intron 45.0%
!! ATGTAGGGTTTGGACTAGCA+GGG + chr2_3:38522649-38522668 None:intergenic 45.0%
!! AATGTAGGGTTTGGACTAGC+AGG + chr2_3:38522650-38522669 None:intergenic 45.0%
CCCCACAAAAATGTAGGGTT+TGG + chr2_3:38522659-38522678 None:intergenic 45.0%
CAGGACCCCACAAAAATGTA+GGG + chr2_3:38522664-38522683 None:intergenic 45.0%
ACAGGACCCCACAAAAATGT+AGG + chr2_3:38522665-38522684 None:intergenic 45.0%
! TACATTTTTGTGGGGTCCTG+TGG - chr2_3:38522664-38522683 Msa0290740:intron 45.0%
GAAGAAGAGTAGACATCCAC+AGG + chr2_3:38522683-38522702 None:intergenic 45.0%
! GTTTCTCGATATCGGCTAAG+TGG - chr2_3:38522946-38522965 Msa0290740:CDS 45.0%
GTTGCTCATTCTGTTGTTGG+AGG - chr2_3:38523092-38523111 Msa0290740:five_prime_UTR 45.0%
GGAGTTTGAAGGGTGGCTAA+GGG + chr2_3:38521602-38521621 None:intergenic 50.0%
TGGAGTTTGAAGGGTGGCTA+AGG + chr2_3:38521603-38521622 None:intergenic 50.0%
CTATTGGAGTCTAGCGCAAG+TGG + chr2_3:38522127-38522146 None:intergenic 50.0%
!! GGGAGTTTGCTACCACAAGA+TGG - chr2_3:38522749-38522768 Msa0290740:CDS 50.0%
CATGGAGCTAGACCATCTTG+TGG + chr2_3:38522764-38522783 None:intergenic 50.0%
GGAGTTTGAAGGGTGGCTAA+GGG + chr2_3:38521602-38521621 None:intergenic 50.0%
TGGAGTTTGAAGGGTGGCTA+AGG + chr2_3:38521603-38521622 None:intergenic 50.0%
CTATTGGAGTCTAGCGCAAG+TGG + chr2_3:38522127-38522146 None:intergenic 50.0%
!! GGGAGTTTGCTACCACAAGA+TGG - chr2_3:38522749-38522768 Msa0290740:CDS 50.0%
CATGGAGCTAGACCATCTTG+TGG + chr2_3:38522764-38522783 None:intergenic 50.0%
! GGTTGGTGCATGTGGTGTGT+CGG + chr2_3:38522106-38522125 None:intergenic 55.0%
TGGAGTCTAGCGCAAGTGGT+TGG + chr2_3:38522123-38522142 None:intergenic 55.0%
TTAGCTTCCCAAGGGACACG+CGG + chr2_3:38522491-38522510 None:intergenic 55.0%
CGTGTCCCTTGGGAAGCTAA+AGG - chr2_3:38522491-38522510 Msa0290740:intron 55.0%
! GGTTGGTGCATGTGGTGTGT+CGG + chr2_3:38522106-38522125 None:intergenic 55.0%
TGGAGTCTAGCGCAAGTGGT+TGG + chr2_3:38522123-38522142 None:intergenic 55.0%
TTAGCTTCCCAAGGGACACG+CGG + chr2_3:38522491-38522510 None:intergenic 55.0%
CGTGTCCCTTGGGAAGCTAA+AGG - chr2_3:38522491-38522510 Msa0290740:intron 55.0%
! GCGCAAGTGGTTGGTGCATG+TGG + chr2_3:38522114-38522133 None:intergenic 60.0%
! GCGCAAGTGGTTGGTGCATG+TGG + chr2_3:38522114-38522133 None:intergenic 60.0%
AGGGCGTGCCGCGTGTCCCT+TGG - chr2_3:38522480-38522499 Msa0290740:intron 75.0%
GGGCGTGCCGCGTGTCCCTT+GGG - chr2_3:38522481-38522500 Msa0290740:intron 75.0%
AGGGCGTGCCGCGTGTCCCT+TGG - chr2_3:38522480-38522499 Msa0290740:intron 75.0%
GGGCGTGCCGCGTGTCCCTT+GGG - chr2_3:38522481-38522500 Msa0290740:intron 75.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 38521369 38523116 38521369 ID=Msa0290740;Name=Msa0290740
chr2_3 mRNA 38521369 38523116 38521369 ID=Msa0290740-mRNA-1;Parent=Msa0290740;Name=Msa0290740-mRNA-1;_AED=0.02;_eAED=0.02;_QI=89|1|1|1|1|1|2|326|264
chr2_3 exon 38521369 38522178 38521369 ID=Msa0290740-mRNA-1:exon:12541;Parent=Msa0290740-mRNA-1
chr2_3 exon 38522717 38523116 38522717 ID=Msa0290740-mRNA-1:exon:12540;Parent=Msa0290740-mRNA-1
chr2_3 five_prime_UTR 38523028 38523116 38523028 ID=Msa0290740-mRNA-1:five_prime_utr;Parent=Msa0290740-mRNA-1
chr2_3 CDS 38522717 38523027 38522717 ID=Msa0290740-mRNA-1:cds;Parent=Msa0290740-mRNA-1
chr2_3 CDS 38521695 38522178 38521695 ID=Msa0290740-mRNA-1:cds;Parent=Msa0290740-mRNA-1
chr2_3 three_prime_UTR 38521369 38521694 38521369 ID=Msa0290740-mRNA-1:three_prime_utr;Parent=Msa0290740-mRNA-1
Gene Sequence

>Msa0290740

ATGGCTTTTCTTCTACCAAACCTACAACCTTATCTCCCAACTCAATCAAAATCCAAAGACAAACCTCTTCACCAAACTCTTTCATCACCAAAACCTACTTCACATTTTCTTGTATCTTCCACTTCATCTGATTCTTCTTCTCCCTTAGCCACCCTTCAAACTCCAACTTCACAAGTTAACACACCGTCAAGTGTTCAAGATAAACAGCTTCCAAAGGATGAATTCTATGTCAACCTTGGACTTGCTGTTAGAACTCTTCGTGAAGACATGCCTATGATCTTCATCAAAGACCTCAATTATGATATCTATAGGGATGATATAACATTTTTGGACCCTTTGAACACATTTACTGGAATTGAAAAGTACAAATTGATCTTCTGGGCATTGAGGTTTCATGGTAAGCTCTTGTTTCATGATATAGCACTTGATGTATATAGAGTGTGGCAACCTTCGAAGAATGTGATATGGATTAGGTGGAAACTTAAGGGCGTGCCGCGTGTCCCTTGGGAAGCTAAAGGAGAATTTCAAGGCACTTCAAAGTATAAATTGGACAAGAATGGCAAAATTTATGAACATAAAGTTGATAACTTGGCATTCAATTTTCCCAAAAATATTAAACCAGTTTCAGTTTTGGATTTTGTTACTTCATGCCCTGCTAGTCCAAACCCTACATTTTTGTGGGGTCCTGTGGATGTCTACTCTTCTTCATGGATAACTTTATATAAGGCAGTTAGGGAGACTTTGAAACAAGAAGGGAGTTTGCTACCACAAGATGGTCTAGCTCCATGCTCGTAA

Protein sequence

>Msa0290740

MAFLLPNLQPYLPTQSKSKDKPLHQTLSSPKPTSHFLVSSTSSDSSSPLATLQTPTSQVNTPSSVQDKQLPKDEFYVNLGLAVRTLREDMPMIFIKDLNYDIYRDDITFLDPLNTFTGIEKYKLIFWALRFHGKLLFHDIALDVYRVWQPSKNVIWIRWKLKGVPRVPWEAKGEFQGTSKYKLDKNGKIYEHKVDNLAFNFPKNIKPVSVLDFVTSCPASPNPTFLWGPVDVYSSSWITLYKAVRETLKQEGSLLPQDGLAPCS*