AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0211130


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0211130 MtrunA17_Chr2g0310191 94.495 218 9 1 3 217 50 267 5.24e-153 425
Msa0211130 MtrunA17_Chr8g0357051 77.725 211 44 2 10 217 58 268 1.00e-123 351
Msa0211130 MtrunA17_Chr8g0348061 57.516 153 63 1 28 178 92 244 1.81e-64 200
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0211130 AT1G79510.2 73.113 212 53 3 10 217 64 275 5.09e-114 327
Msa0211130 AT1G79510.1 73.113 212 53 3 10 217 64 275 5.09e-114 327
Msa0211130 AT1G16320.1 67.873 221 64 4 4 217 53 273 1.57e-109 315
Msa0211130 AT2G46220.1 55.128 156 68 1 25 178 81 236 6.96e-64 198

Find 73 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTCTCCAACTTAAAATTTC+TGG 0.061493 2_1:-51944556 None:intergenic
GACCCTTTGAACACATTTAC+TGG 0.221962 2_1:+51944069 Msa0211130:CDS
AATTGATCTTCTGGGCATTA+AGG 0.256833 2_1:+51944106 Msa0211130:CDS
AAAAGTACAAATTGATCTTC+TGG 0.288211 2_1:+51944097 Msa0211130:CDS
AGGTACTTCAAAGTATAAAT+TGG 0.289700 2_1:+51944266 Msa0211130:CDS
TATTAAACCAGTTTCAGTTT+TGG 0.296641 2_1:+51944350 Msa0211130:CDS
AATATTGAGTTTCTCGATAT+CGG 0.305671 2_1:+51944681 Msa0211130:three_prime_UTR
TTATAAGAGTGTATATAAAT+AGG 0.322094 2_1:+51944791 Msa0211130:three_prime_UTR
TTCATGGATAACTTTATATA+AGG 0.327641 2_1:+51944443 Msa0211130:CDS
TTCTGGGCATTAAGGTTTCA+TGG 0.331559 2_1:+51944114 Msa0211130:CDS
TGGATGTTTACTCTTCTTCA+TGG 0.338280 2_1:+51944427 Msa0211130:CDS
TAACTTTATATAAGGCAGTT+AGG 0.342291 2_1:+51944451 Msa0211130:CDS
TGTATAGAATCAAGCTTAAT+AGG 0.349089 2_1:+51944721 Msa0211130:three_prime_UTR
ACAAAATCCAAAACTGAAAC+TGG 0.373146 2_1:-51944357 None:intergenic
ATCCATATCACATTCTTTGA+AGG 0.378380 2_1:-51944186 None:intergenic
AACCTTCAAAGAATGTGATA+TGG 0.392294 2_1:+51944184 Msa0211130:CDS
CAAAGAATGTGATATGGATT+AGG 0.401184 2_1:+51944190 Msa0211130:CDS
AAAGTACAAATTGATCTTCT+GGG 0.402078 2_1:+51944098 Msa0211130:CDS
ATGGATTAGGTGGAACCTTA+AGG 0.407766 2_1:+51944203 Msa0211130:CDS
AGGGCGTGCCACGTGTCCCT+TGG 0.410951 2_1:+51944223 Msa0211130:CDS
ACTCGTATATATAAAGTTGT+AGG 0.417731 2_1:+51944583 Msa0211130:three_prime_UTR
GGACACGTGGCACGCCCTTA+AGG 0.420547 2_1:-51944218 None:intergenic
TGTTTATCTTGAACACTTGA+TGG 0.420634 2_1:-51943385 None:intergenic
TTTACATAGAATTCATCCTT+TGG 0.428640 2_1:-51943412 None:intergenic
CCCCACACAAATGTAGGGTT+TGG 0.430865 2_1:-51944399 None:intergenic
AACTTTATATAAGGCAGTTA+GGG 0.433549 2_1:+51944452 Msa0211130:CDS
AGGTCTTTGATGAAGATCAT+AGG 0.436047 2_1:-51943472 None:intergenic
GAAGTTGCTCATTCTGTTGT+TGG 0.439021 2_1:+51944832 Msa0211130:three_prime_UTR
TGAACATAAAGTTGATAACT+TGG 0.441163 2_1:+51944308 Msa0211130:CDS
AATGTAGGGTTTGGACTAGC+AGG 0.447844 2_1:-51944390 None:intergenic
GGGCGTGCCACGTGTCCCTT+GGG 0.451037 2_1:+51944224 Msa0211130:CDS
TGGATTAGGTGGAACCTTAA+GGG 0.470608 2_1:+51944204 Msa0211130:CDS
TTCCAGTAAATGTGTTCAAA+GGG 0.479487 2_1:-51944071 None:intergenic
ATTCCAGTAAATGTGTTCAA+AGG 0.481360 2_1:-51944072 None:intergenic
ACCTCAATTATGATATCTAT+AGG 0.485916 2_1:+51943491 Msa0211130:CDS
AGGGAGACTTTGAAACAAGA+AGG 0.486403 2_1:+51944471 Msa0211130:CDS
ACAGGACCCCACACAAATGT+AGG 0.488270 2_1:-51944405 None:intergenic
CATAGAATTCATCCTTTGGA+AGG 0.493982 2_1:-51943408 None:intergenic
TTATATATATTGTTATACAT+TGG 0.498168 2_1:-51944655 None:intergenic
GGTGTGTTAACTTGTGAAGT+TGG 0.498670 2_1:-51943364 None:intergenic
GGTCAGATATAATGAATTTG+TGG 0.498813 2_1:+51944742 Msa0211130:three_prime_UTR
GAAGCTAAAGGAGAATTTCA+AGG 0.507198 2_1:+51944246 Msa0211130:CDS
ATTTGTGGCATAGCATGAAA+TGG 0.514904 2_1:+51944757 Msa0211130:three_prime_UTR
AAGTATAAATTGGACAAGAA+AGG 0.518948 2_1:+51944276 Msa0211130:CDS
GATGAATTCTATGTAAACCT+TGG 0.522285 2_1:+51943418 Msa0211130:CDS
ACCTATAGATATCATAATTG+AGG 0.529058 2_1:-51943492 None:intergenic
TACATTTGTGTGGGGTCCTG+TGG 0.535948 2_1:+51944407 Msa0211130:CDS
GTTTCTCGATATCGGCTAAG+TGG 0.547890 2_1:+51944689 Msa0211130:three_prime_UTR
CGTGTCCCTTGGGAAGCTAA+AGG 0.549445 2_1:+51944234 Msa0211130:CDS
TCCAAACCCTACATTTGTGT+GGG 0.552938 2_1:+51944398 Msa0211130:CDS
AATTCTCCTTTAGCTTCCCA+AGG 0.554730 2_1:-51944240 None:intergenic
CTTGTGAAGTTGGAGTTTGA+AGG 0.555695 2_1:-51943354 None:intergenic
GAGTTCTCACAGCAAGTCCA+AGG 0.562493 2_1:-51943435 None:intergenic
ATAGATAATACTTACGAGCA+TGG 0.565339 2_1:-51944522 None:intergenic
AGAATGTGATATGGATTAGG+TGG 0.569695 2_1:+51944193 Msa0211130:CDS
GTTGCTCATTCTGTTGTTGG+AGG 0.574208 2_1:+51944835 Msa0211130:three_prime_UTR
AGCTTGATTCTATACACGGT+CGG 0.576831 2_1:-51944714 None:intergenic
GTCCAAACCCTACATTTGTG+TGG 0.582592 2_1:+51944397 Msa0211130:CDS
GGGAGACTTTGAAACAAGAA+GGG 0.595464 2_1:+51944472 Msa0211130:CDS
GAAGAAGAGTAAACATCCAC+AGG 0.595995 2_1:-51944423 None:intergenic
GTAACGTATTATAAAATGCA+AGG 0.597677 2_1:+51942987 None:intergenic
CAGGACCCCACACAAATGTA+GGG 0.600096 2_1:-51944404 None:intergenic
AGAGTGTATATAAATAGGCA+AGG 0.608791 2_1:+51944796 Msa0211130:three_prime_UTR
GGGAGTTTGCTACCACAAGA+TGG 0.611323 2_1:+51944492 Msa0211130:CDS
ATTCTCCTTTAGCTTCCCAA+GGG 0.617667 2_1:-51944239 None:intergenic
ATTAAGCTTGATTCTATACA+CGG 0.641949 2_1:-51944718 None:intergenic
CACTTGATGTATATAGAGTG+TGG 0.642892 2_1:+51944160 Msa0211130:CDS
ATGTACAGTATAGTACATGT+TGG 0.643565 2_1:+51944627 Msa0211130:three_prime_UTR
ATGTAGGGTTTGGACTAGCA+GGG 0.646183 2_1:-51944389 None:intergenic
TCAAGATAAACACCTTCCAA+AGG 0.652143 2_1:+51943396 Msa0211130:CDS
TTAGCTTCCCAAGGGACACG+TGG 0.665121 2_1:-51944231 None:intergenic
CATGGAGCTAGACCATCTTG+TGG 0.685164 2_1:-51944504 None:intergenic
CCAAACCCTACATTTGTGTG+GGG 0.687701 2_1:+51944399 Msa0211130:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATATATATTGTTATACAT+TGG - chr2_1:51944658-51944677 None:intergenic 10.0%
!! TTATATATATTGTTATACAT+TGG - chr2_1:51944658-51944677 None:intergenic 10.0%
!! AAATATGATGTTATAAGAAA+TGG - chr2_1:51943545-51943564 None:intergenic 15.0%
!! TATTAAATTGTACTATATAC+AGG + chr2_1:51943660-51943679 Msa0211130:intron 15.0%
!! TATCAATAGTTTAATACTAT+TGG - chr2_1:51943880-51943899 None:intergenic 15.0%
!!! TTATAAGAGTGTATATAAAT+AGG + chr2_1:51944791-51944810 Msa0211130:three_prime_UTR 15.0%
!! AAATATGATGTTATAAGAAA+TGG - chr2_1:51943545-51943564 None:intergenic 15.0%
!! TATTAAATTGTACTATATAC+AGG + chr2_1:51943660-51943679 Msa0211130:intron 15.0%
!! TATCAATAGTTTAATACTAT+TGG - chr2_1:51943880-51943899 None:intergenic 15.0%
!!! TTATAAGAGTGTATATAAAT+AGG + chr2_1:51944791-51944810 Msa0211130:three_prime_UTR 15.0%
!! TGTTAAATAGGCTTATAATA+GGG - chr2_1:51943611-51943630 None:intergenic 20.0%
!! TGTAAAATGAGCATATTATT+AGG + chr2_1:51943978-51943997 Msa0211130:intron 20.0%
!!! TTATTAGGTAGTGAATTTTA+AGG + chr2_1:51943993-51944012 Msa0211130:intron 20.0%
!!! TTGAAATTTGATCAATTTTC+AGG + chr2_1:51944028-51944047 Msa0211130:intron 20.0%
!!! TGAAATTTGATCAATTTTCA+GGG + chr2_1:51944029-51944048 Msa0211130:intron 20.0%
!!! GAAACTGGTTTAATATTTTT+GGG - chr2_1:51944345-51944364 None:intergenic 20.0%
!!! TGAAACTGGTTTAATATTTT+TGG - chr2_1:51944346-51944365 None:intergenic 20.0%
!! TTCATGGATAACTTTATATA+AGG + chr2_1:51944443-51944462 Msa0211130:CDS 20.0%
!! TGTTAAATAGGCTTATAATA+GGG - chr2_1:51943611-51943630 None:intergenic 20.0%
!! TGTAAAATGAGCATATTATT+AGG + chr2_1:51943978-51943997 Msa0211130:intron 20.0%
!!! TTATTAGGTAGTGAATTTTA+AGG + chr2_1:51943993-51944012 Msa0211130:intron 20.0%
!!! TTGAAATTTGATCAATTTTC+AGG + chr2_1:51944028-51944047 Msa0211130:intron 20.0%
!!! TGAAATTTGATCAATTTTCA+GGG + chr2_1:51944029-51944048 Msa0211130:intron 20.0%
!!! GAAACTGGTTTAATATTTTT+GGG - chr2_1:51944345-51944364 None:intergenic 20.0%
!!! TGAAACTGGTTTAATATTTT+TGG - chr2_1:51944346-51944365 None:intergenic 20.0%
!! TTCATGGATAACTTTATATA+AGG + chr2_1:51944443-51944462 Msa0211130:CDS 20.0%
!! AAAACCATTGAAGCATTAAA+AGG + chr2_1:51943177-51943196 Msa0211130:intron 25.0%
!! ATAACCTTTTAATGCTTCAA+TGG - chr2_1:51943184-51943203 None:intergenic 25.0%
!! ATTGAAGCATTAAAAGGTTA+TGG + chr2_1:51943183-51943202 Msa0211130:intron 25.0%
! TTTACATAGAATTCATCCTT+TGG - chr2_1:51943415-51943434 None:intergenic 25.0%
! ACCTCAATTATGATATCTAT+AGG + chr2_1:51943491-51943510 Msa0211130:CDS 25.0%
! ACCTATAGATATCATAATTG+AGG - chr2_1:51943495-51943514 None:intergenic 25.0%
! GTGTTAAATAGGCTTATAAT+AGG - chr2_1:51943612-51943631 None:intergenic 25.0%
! GTACACATTAAGTGTTAAAT+AGG - chr2_1:51943623-51943642 None:intergenic 25.0%
!!! GACAAGATTTTTTTATGCTT+AGG + chr2_1:51943763-51943782 Msa0211130:intron 25.0%
!! TTGCAATGATGTTTATGTTT+TGG + chr2_1:51943941-51943960 Msa0211130:intron 25.0%
!! AAAAGTACAAATTGATCTTC+TGG + chr2_1:51944097-51944116 Msa0211130:CDS 25.0%
! AAAGTACAAATTGATCTTCT+GGG + chr2_1:51944098-51944117 Msa0211130:CDS 25.0%
! AGGTACTTCAAAGTATAAAT+TGG + chr2_1:51944266-51944285 Msa0211130:CDS 25.0%
! AAGTATAAATTGGACAAGAA+AGG + chr2_1:51944276-51944295 Msa0211130:CDS 25.0%
!!! TGAACATAAAGTTGATAACT+TGG + chr2_1:51944308-51944327 Msa0211130:CDS 25.0%
!! TATTAAACCAGTTTCAGTTT+TGG + chr2_1:51944350-51944369 Msa0211130:CDS 25.0%
! TAACTTTATATAAGGCAGTT+AGG + chr2_1:51944451-51944470 Msa0211130:CDS 25.0%
! AACTTTATATAAGGCAGTTA+GGG + chr2_1:51944452-51944471 Msa0211130:CDS 25.0%
! ACTCGTATATATAAAGTTGT+AGG + chr2_1:51944583-51944602 Msa0211130:three_prime_UTR 25.0%
! AATATTGAGTTTCTCGATAT+CGG + chr2_1:51944681-51944700 Msa0211130:three_prime_UTR 25.0%
! ATTAAGCTTGATTCTATACA+CGG - chr2_1:51944721-51944740 None:intergenic 25.0%
! TGTATAGAATCAAGCTTAAT+AGG + chr2_1:51944721-51944740 Msa0211130:three_prime_UTR 25.0%
!! AAAACCATTGAAGCATTAAA+AGG + chr2_1:51943177-51943196 Msa0211130:intron 25.0%
!! ATAACCTTTTAATGCTTCAA+TGG - chr2_1:51943184-51943203 None:intergenic 25.0%
!! ATTGAAGCATTAAAAGGTTA+TGG + chr2_1:51943183-51943202 Msa0211130:intron 25.0%
! TTTACATAGAATTCATCCTT+TGG - chr2_1:51943415-51943434 None:intergenic 25.0%
! ACCTCAATTATGATATCTAT+AGG + chr2_1:51943491-51943510 Msa0211130:CDS 25.0%
! ACCTATAGATATCATAATTG+AGG - chr2_1:51943495-51943514 None:intergenic 25.0%
! GTGTTAAATAGGCTTATAAT+AGG - chr2_1:51943612-51943631 None:intergenic 25.0%
! GTACACATTAAGTGTTAAAT+AGG - chr2_1:51943623-51943642 None:intergenic 25.0%
!!! GACAAGATTTTTTTATGCTT+AGG + chr2_1:51943763-51943782 Msa0211130:intron 25.0%
!! TTGCAATGATGTTTATGTTT+TGG + chr2_1:51943941-51943960 Msa0211130:intron 25.0%
!! AAAAGTACAAATTGATCTTC+TGG + chr2_1:51944097-51944116 Msa0211130:CDS 25.0%
! AAAGTACAAATTGATCTTCT+GGG + chr2_1:51944098-51944117 Msa0211130:CDS 25.0%
! AGGTACTTCAAAGTATAAAT+TGG + chr2_1:51944266-51944285 Msa0211130:CDS 25.0%
! AAGTATAAATTGGACAAGAA+AGG + chr2_1:51944276-51944295 Msa0211130:CDS 25.0%
!!! TGAACATAAAGTTGATAACT+TGG + chr2_1:51944308-51944327 Msa0211130:CDS 25.0%
!! TATTAAACCAGTTTCAGTTT+TGG + chr2_1:51944350-51944369 Msa0211130:CDS 25.0%
! TAACTTTATATAAGGCAGTT+AGG + chr2_1:51944451-51944470 Msa0211130:CDS 25.0%
! AACTTTATATAAGGCAGTTA+GGG + chr2_1:51944452-51944471 Msa0211130:CDS 25.0%
! ACTCGTATATATAAAGTTGT+AGG + chr2_1:51944583-51944602 Msa0211130:three_prime_UTR 25.0%
! AATATTGAGTTTCTCGATAT+CGG + chr2_1:51944681-51944700 Msa0211130:three_prime_UTR 25.0%
! ATTAAGCTTGATTCTATACA+CGG - chr2_1:51944721-51944740 None:intergenic 25.0%
! TGTATAGAATCAAGCTTAAT+AGG + chr2_1:51944721-51944740 Msa0211130:three_prime_UTR 25.0%
TTTAAATGTGGGAATGAGAT+TGG - chr2_1:51943051-51943070 None:intergenic 30.0%
TTTATTGTGTGATGTTTGAG+TGG - chr2_1:51943075-51943094 None:intergenic 30.0%
!!! CTTTGGATTTTGATTGAGTT+GGG - chr2_1:51943240-51943259 None:intergenic 30.0%
!!! TCTTTGGATTTTGATTGAGT+TGG - chr2_1:51943241-51943260 None:intergenic 30.0%
GATACAAGAAAATGTGAAGT+GGG - chr2_1:51943298-51943317 None:intergenic 30.0%
AGATACAAGAAAATGTGAAG+TGG - chr2_1:51943299-51943318 None:intergenic 30.0%
AGAAGAAGAATCAAATGAAG+TGG - chr2_1:51943323-51943342 None:intergenic 30.0%
TGTTTATCTTGAACACTTGA+TGG - chr2_1:51943388-51943407 None:intergenic 30.0%
GATGAATTCTATGTAAACCT+TGG + chr2_1:51943418-51943437 Msa0211130:CDS 30.0%
AATTGTACTATATACAGGAC+CGG + chr2_1:51943665-51943684 Msa0211130:intron 30.0%
TTATGCTTAGGAGTTAAACT+TGG + chr2_1:51943775-51943794 Msa0211130:intron 30.0%
! CAGGGATGATATAACATTTT+TGG + chr2_1:51944047-51944066 Msa0211130:intron 30.0%
TTCCAGTAAATGTGTTCAAA+GGG - chr2_1:51944074-51944093 None:intergenic 30.0%
ATTCCAGTAAATGTGTTCAA+AGG - chr2_1:51944075-51944094 None:intergenic 30.0%
AACCTTCAAAGAATGTGATA+TGG + chr2_1:51944184-51944203 Msa0211130:CDS 30.0%
ATCCATATCACATTCTTTGA+AGG - chr2_1:51944189-51944208 None:intergenic 30.0%
CAAAGAATGTGATATGGATT+AGG + chr2_1:51944190-51944209 Msa0211130:CDS 30.0%
ACAAAATCCAAAACTGAAAC+TGG - chr2_1:51944360-51944379 None:intergenic 30.0%
ATAGATAATACTTACGAGCA+TGG - chr2_1:51944525-51944544 None:intergenic 30.0%
!! CGAATCCAGAAATTTTAAGT+TGG + chr2_1:51944551-51944570 Msa0211130:three_prime_UTR 30.0%
ATGTACAGTATAGTACATGT+TGG + chr2_1:51944627-51944646 Msa0211130:three_prime_UTR 30.0%
GGTCAGATATAATGAATTTG+TGG + chr2_1:51944742-51944761 Msa0211130:three_prime_UTR 30.0%
AGAGTGTATATAAATAGGCA+AGG + chr2_1:51944796-51944815 Msa0211130:three_prime_UTR 30.0%
TTTAAATGTGGGAATGAGAT+TGG - chr2_1:51943051-51943070 None:intergenic 30.0%
TTTATTGTGTGATGTTTGAG+TGG - chr2_1:51943075-51943094 None:intergenic 30.0%
!!! CTTTGGATTTTGATTGAGTT+GGG - chr2_1:51943240-51943259 None:intergenic 30.0%
!!! TCTTTGGATTTTGATTGAGT+TGG - chr2_1:51943241-51943260 None:intergenic 30.0%
GATACAAGAAAATGTGAAGT+GGG - chr2_1:51943298-51943317 None:intergenic 30.0%
AGATACAAGAAAATGTGAAG+TGG - chr2_1:51943299-51943318 None:intergenic 30.0%
AGAAGAAGAATCAAATGAAG+TGG - chr2_1:51943323-51943342 None:intergenic 30.0%
TGTTTATCTTGAACACTTGA+TGG - chr2_1:51943388-51943407 None:intergenic 30.0%
GATGAATTCTATGTAAACCT+TGG + chr2_1:51943418-51943437 Msa0211130:CDS 30.0%
AATTGTACTATATACAGGAC+CGG + chr2_1:51943665-51943684 Msa0211130:intron 30.0%
TTATGCTTAGGAGTTAAACT+TGG + chr2_1:51943775-51943794 Msa0211130:intron 30.0%
! CAGGGATGATATAACATTTT+TGG + chr2_1:51944047-51944066 Msa0211130:intron 30.0%
TTCCAGTAAATGTGTTCAAA+GGG - chr2_1:51944074-51944093 None:intergenic 30.0%
ATTCCAGTAAATGTGTTCAA+AGG - chr2_1:51944075-51944094 None:intergenic 30.0%
AACCTTCAAAGAATGTGATA+TGG + chr2_1:51944184-51944203 Msa0211130:CDS 30.0%
ATCCATATCACATTCTTTGA+AGG - chr2_1:51944189-51944208 None:intergenic 30.0%
CAAAGAATGTGATATGGATT+AGG + chr2_1:51944190-51944209 Msa0211130:CDS 30.0%
ACAAAATCCAAAACTGAAAC+TGG - chr2_1:51944360-51944379 None:intergenic 30.0%
ATAGATAATACTTACGAGCA+TGG - chr2_1:51944525-51944544 None:intergenic 30.0%
!! CGAATCCAGAAATTTTAAGT+TGG + chr2_1:51944551-51944570 Msa0211130:three_prime_UTR 30.0%
ATGTACAGTATAGTACATGT+TGG + chr2_1:51944627-51944646 Msa0211130:three_prime_UTR 30.0%
GGTCAGATATAATGAATTTG+TGG + chr2_1:51944742-51944761 Msa0211130:three_prime_UTR 30.0%
AGAGTGTATATAAATAGGCA+AGG + chr2_1:51944796-51944815 Msa0211130:three_prime_UTR 30.0%
!! GTTTGAGTGGCTTTAAATGT+GGG - chr2_1:51943062-51943081 None:intergenic 35.0%
!! TGTTTGAGTGGCTTTAAATG+TGG - chr2_1:51943063-51943082 None:intergenic 35.0%
ATGAGTGATGAAGCAAATTG+AGG - chr2_1:51943119-51943138 None:intergenic 35.0%
!! TTTGATTGAGTTGGGAGATA+AGG - chr2_1:51943232-51943251 None:intergenic 35.0%
!!! GTTTTGGTGATGAAAGAGTT+TGG - chr2_1:51943276-51943295 None:intergenic 35.0%
!! AGAAAATGTGAAGTGGGTTT+TGG - chr2_1:51943292-51943311 None:intergenic 35.0%
TTTGATTCTTCTTCTCCCTT+AGG + chr2_1:51943328-51943347 Msa0211130:intron 35.0%
TCAAGATAAACACCTTCCAA+AGG + chr2_1:51943396-51943415 Msa0211130:CDS 35.0%
CATAGAATTCATCCTTTGGA+AGG - chr2_1:51943411-51943430 None:intergenic 35.0%
AGGTCTTTGATGAAGATCAT+AGG - chr2_1:51943475-51943494 None:intergenic 35.0%
!!! TGTTTTGAAAACTCGATGTC+CGG - chr2_1:51943687-51943706 None:intergenic 35.0%
AATTGATCTTCTGGGCATTA+AGG + chr2_1:51944106-51944125 Msa0211130:CDS 35.0%
CACTTGATGTATATAGAGTG+TGG + chr2_1:51944160-51944179 Msa0211130:CDS 35.0%
!! AGAATGTGATATGGATTAGG+TGG + chr2_1:51944193-51944212 Msa0211130:CDS 35.0%
GAAGCTAAAGGAGAATTTCA+AGG + chr2_1:51944246-51944265 Msa0211130:CDS 35.0%
TGGATGTTTACTCTTCTTCA+TGG + chr2_1:51944427-51944446 Msa0211130:CDS 35.0%
CCTCTCCAACTTAAAATTTC+TGG - chr2_1:51944559-51944578 None:intergenic 35.0%
!!! CCAGAAATTTTAAGTTGGAG+AGG + chr2_1:51944556-51944575 Msa0211130:three_prime_UTR 35.0%
ATTTGTGGCATAGCATGAAA+TGG + chr2_1:51944757-51944776 Msa0211130:three_prime_UTR 35.0%
!! GTTTGAGTGGCTTTAAATGT+GGG - chr2_1:51943062-51943081 None:intergenic 35.0%
!! TGTTTGAGTGGCTTTAAATG+TGG - chr2_1:51943063-51943082 None:intergenic 35.0%
ATGAGTGATGAAGCAAATTG+AGG - chr2_1:51943119-51943138 None:intergenic 35.0%
!! TTTGATTGAGTTGGGAGATA+AGG - chr2_1:51943232-51943251 None:intergenic 35.0%
!!! GTTTTGGTGATGAAAGAGTT+TGG - chr2_1:51943276-51943295 None:intergenic 35.0%
!! AGAAAATGTGAAGTGGGTTT+TGG - chr2_1:51943292-51943311 None:intergenic 35.0%
TTTGATTCTTCTTCTCCCTT+AGG + chr2_1:51943328-51943347 Msa0211130:intron 35.0%
TCAAGATAAACACCTTCCAA+AGG + chr2_1:51943396-51943415 Msa0211130:CDS 35.0%
CATAGAATTCATCCTTTGGA+AGG - chr2_1:51943411-51943430 None:intergenic 35.0%
AGGTCTTTGATGAAGATCAT+AGG - chr2_1:51943475-51943494 None:intergenic 35.0%
!!! TGTTTTGAAAACTCGATGTC+CGG - chr2_1:51943687-51943706 None:intergenic 35.0%
AATTGATCTTCTGGGCATTA+AGG + chr2_1:51944106-51944125 Msa0211130:CDS 35.0%
CACTTGATGTATATAGAGTG+TGG + chr2_1:51944160-51944179 Msa0211130:CDS 35.0%
!! AGAATGTGATATGGATTAGG+TGG + chr2_1:51944193-51944212 Msa0211130:CDS 35.0%
GAAGCTAAAGGAGAATTTCA+AGG + chr2_1:51944246-51944265 Msa0211130:CDS 35.0%
TGGATGTTTACTCTTCTTCA+TGG + chr2_1:51944427-51944446 Msa0211130:CDS 35.0%
CCTCTCCAACTTAAAATTTC+TGG - chr2_1:51944559-51944578 None:intergenic 35.0%
!!! CCAGAAATTTTAAGTTGGAG+AGG + chr2_1:51944556-51944575 Msa0211130:three_prime_UTR 35.0%
ATTTGTGGCATAGCATGAAA+TGG + chr2_1:51944757-51944776 Msa0211130:three_prime_UTR 35.0%
TTGGTGAAGAGGTTTGTCTT+TGG - chr2_1:51943257-51943276 None:intergenic 40.0%
! GATGAAAGAGTTTGGTGAAG+AGG - chr2_1:51943268-51943287 None:intergenic 40.0%
CTTGTGAAGTTGGAGTTTGA+AGG - chr2_1:51943357-51943376 None:intergenic 40.0%
!! GGTGTGTTAACTTGTGAAGT+TGG - chr2_1:51943367-51943386 None:intergenic 40.0%
GACCCTTTGAACACATTTAC+TGG + chr2_1:51944069-51944088 Msa0211130:CDS 40.0%
TTCTGGGCATTAAGGTTTCA+TGG + chr2_1:51944114-51944133 Msa0211130:CDS 40.0%
!! ATGGATTAGGTGGAACCTTA+AGG + chr2_1:51944203-51944222 Msa0211130:CDS 40.0%
! TGGATTAGGTGGAACCTTAA+GGG + chr2_1:51944204-51944223 Msa0211130:CDS 40.0%
! ATTCTCCTTTAGCTTCCCAA+GGG - chr2_1:51944242-51944261 None:intergenic 40.0%
! AATTCTCCTTTAGCTTCCCA+AGG - chr2_1:51944243-51944262 None:intergenic 40.0%
TCCAAACCCTACATTTGTGT+GGG + chr2_1:51944398-51944417 Msa0211130:CDS 40.0%
GAAGAAGAGTAAACATCCAC+AGG - chr2_1:51944426-51944445 None:intergenic 40.0%
!! AGGGAGACTTTGAAACAAGA+AGG + chr2_1:51944471-51944490 Msa0211130:CDS 40.0%
!! GGGAGACTTTGAAACAAGAA+GGG + chr2_1:51944472-51944491 Msa0211130:CDS 40.0%
AGCTTGATTCTATACACGGT+CGG - chr2_1:51944717-51944736 None:intergenic 40.0%
GAAGTTGCTCATTCTGTTGT+TGG + chr2_1:51944832-51944851 Msa0211130:three_prime_UTR 40.0%
TTGGTGAAGAGGTTTGTCTT+TGG - chr2_1:51943257-51943276 None:intergenic 40.0%
! GATGAAAGAGTTTGGTGAAG+AGG - chr2_1:51943268-51943287 None:intergenic 40.0%
CTTGTGAAGTTGGAGTTTGA+AGG - chr2_1:51943357-51943376 None:intergenic 40.0%
!! GGTGTGTTAACTTGTGAAGT+TGG - chr2_1:51943367-51943386 None:intergenic 40.0%
GACCCTTTGAACACATTTAC+TGG + chr2_1:51944069-51944088 Msa0211130:CDS 40.0%
TTCTGGGCATTAAGGTTTCA+TGG + chr2_1:51944114-51944133 Msa0211130:CDS 40.0%
!! ATGGATTAGGTGGAACCTTA+AGG + chr2_1:51944203-51944222 Msa0211130:CDS 40.0%
! TGGATTAGGTGGAACCTTAA+GGG + chr2_1:51944204-51944223 Msa0211130:CDS 40.0%
! ATTCTCCTTTAGCTTCCCAA+GGG - chr2_1:51944242-51944261 None:intergenic 40.0%
! AATTCTCCTTTAGCTTCCCA+AGG - chr2_1:51944243-51944262 None:intergenic 40.0%
TCCAAACCCTACATTTGTGT+GGG + chr2_1:51944398-51944417 Msa0211130:CDS 40.0%
GAAGAAGAGTAAACATCCAC+AGG - chr2_1:51944426-51944445 None:intergenic 40.0%
!! AGGGAGACTTTGAAACAAGA+AGG + chr2_1:51944471-51944490 Msa0211130:CDS 40.0%
!! GGGAGACTTTGAAACAAGAA+GGG + chr2_1:51944472-51944491 Msa0211130:CDS 40.0%
AGCTTGATTCTATACACGGT+CGG - chr2_1:51944717-51944736 None:intergenic 40.0%
GAAGTTGCTCATTCTGTTGT+TGG + chr2_1:51944832-51944851 Msa0211130:three_prime_UTR 40.0%
GGGAGATAAGGTTGTAGGTT+TGG - chr2_1:51943220-51943239 None:intergenic 45.0%
GAGTTGGGAGATAAGGTTGT+AGG - chr2_1:51943225-51943244 None:intergenic 45.0%
GGAGTTTGAAGGTTGCCTAA+GGG - chr2_1:51943346-51943365 None:intergenic 45.0%
TGGAGTTTGAAGGTTGCCTA+AGG - chr2_1:51943347-51943366 None:intergenic 45.0%
!! ATGTAGGGTTTGGACTAGCA+GGG - chr2_1:51944392-51944411 None:intergenic 45.0%
!! AATGTAGGGTTTGGACTAGC+AGG - chr2_1:51944393-51944412 None:intergenic 45.0%
GTCCAAACCCTACATTTGTG+TGG + chr2_1:51944397-51944416 Msa0211130:CDS 45.0%
CCAAACCCTACATTTGTGTG+GGG + chr2_1:51944399-51944418 Msa0211130:CDS 45.0%
! GTTTCTCGATATCGGCTAAG+TGG + chr2_1:51944689-51944708 Msa0211130:three_prime_UTR 45.0%
GTTGCTCATTCTGTTGTTGG+AGG + chr2_1:51944835-51944854 Msa0211130:three_prime_UTR 45.0%
GGGAGATAAGGTTGTAGGTT+TGG - chr2_1:51943220-51943239 None:intergenic 45.0%
GAGTTGGGAGATAAGGTTGT+AGG - chr2_1:51943225-51943244 None:intergenic 45.0%
GGAGTTTGAAGGTTGCCTAA+GGG - chr2_1:51943346-51943365 None:intergenic 45.0%
TGGAGTTTGAAGGTTGCCTA+AGG - chr2_1:51943347-51943366 None:intergenic 45.0%
!! ATGTAGGGTTTGGACTAGCA+GGG - chr2_1:51944392-51944411 None:intergenic 45.0%
!! AATGTAGGGTTTGGACTAGC+AGG - chr2_1:51944393-51944412 None:intergenic 45.0%
GTCCAAACCCTACATTTGTG+TGG + chr2_1:51944397-51944416 Msa0211130:CDS 45.0%
CCAAACCCTACATTTGTGTG+GGG + chr2_1:51944399-51944418 Msa0211130:CDS 45.0%
! GTTTCTCGATATCGGCTAAG+TGG + chr2_1:51944689-51944708 Msa0211130:three_prime_UTR 45.0%
GTTGCTCATTCTGTTGTTGG+AGG + chr2_1:51944835-51944854 Msa0211130:three_prime_UTR 45.0%
GAGTTCTCACAGCAAGTCCA+AGG - chr2_1:51943438-51943457 None:intergenic 50.0%
! GGTTGGTGCATATGGTGTGT+CGG - chr2_1:51943843-51943862 None:intergenic 50.0%
CTATTGGAGTCTAGCGCAAG+TGG - chr2_1:51943864-51943883 None:intergenic 50.0%
CCCCACACAAATGTAGGGTT+TGG - chr2_1:51944402-51944421 None:intergenic 50.0%
CAGGACCCCACACAAATGTA+GGG - chr2_1:51944407-51944426 None:intergenic 50.0%
ACAGGACCCCACACAAATGT+AGG - chr2_1:51944408-51944427 None:intergenic 50.0%
TACATTTGTGTGGGGTCCTG+TGG + chr2_1:51944407-51944426 Msa0211130:CDS 50.0%
!! GGGAGTTTGCTACCACAAGA+TGG + chr2_1:51944492-51944511 Msa0211130:CDS 50.0%
CATGGAGCTAGACCATCTTG+TGG - chr2_1:51944507-51944526 None:intergenic 50.0%
GAGTTCTCACAGCAAGTCCA+AGG - chr2_1:51943438-51943457 None:intergenic 50.0%
! GGTTGGTGCATATGGTGTGT+CGG - chr2_1:51943843-51943862 None:intergenic 50.0%
CTATTGGAGTCTAGCGCAAG+TGG - chr2_1:51943864-51943883 None:intergenic 50.0%
CCCCACACAAATGTAGGGTT+TGG - chr2_1:51944402-51944421 None:intergenic 50.0%
CAGGACCCCACACAAATGTA+GGG - chr2_1:51944407-51944426 None:intergenic 50.0%
ACAGGACCCCACACAAATGT+AGG - chr2_1:51944408-51944427 None:intergenic 50.0%
TACATTTGTGTGGGGTCCTG+TGG + chr2_1:51944407-51944426 Msa0211130:CDS 50.0%
!! GGGAGTTTGCTACCACAAGA+TGG + chr2_1:51944492-51944511 Msa0211130:CDS 50.0%
CATGGAGCTAGACCATCTTG+TGG - chr2_1:51944507-51944526 None:intergenic 50.0%
! GCGCAAGTGGTTGGTGCATA+TGG - chr2_1:51943851-51943870 None:intergenic 55.0%
TGGAGTCTAGCGCAAGTGGT+TGG - chr2_1:51943860-51943879 None:intergenic 55.0%
TTAGCTTCCCAAGGGACACG+TGG - chr2_1:51944234-51944253 None:intergenic 55.0%
CGTGTCCCTTGGGAAGCTAA+AGG + chr2_1:51944234-51944253 Msa0211130:CDS 55.0%
! GCGCAAGTGGTTGGTGCATA+TGG - chr2_1:51943851-51943870 None:intergenic 55.0%
TGGAGTCTAGCGCAAGTGGT+TGG - chr2_1:51943860-51943879 None:intergenic 55.0%
TTAGCTTCCCAAGGGACACG+TGG - chr2_1:51944234-51944253 None:intergenic 55.0%
CGTGTCCCTTGGGAAGCTAA+AGG + chr2_1:51944234-51944253 Msa0211130:CDS 55.0%
GGACACGTGGCACGCCCTTA+AGG - chr2_1:51944221-51944240 None:intergenic 65.0%
GGACACGTGGCACGCCCTTA+AGG - chr2_1:51944221-51944240 None:intergenic 65.0%
AGGGCGTGCCACGTGTCCCT+TGG + chr2_1:51944223-51944242 Msa0211130:CDS 70.0%
GGGCGTGCCACGTGTCCCTT+GGG + chr2_1:51944224-51944243 Msa0211130:CDS 70.0%
AGGGCGTGCCACGTGTCCCT+TGG + chr2_1:51944223-51944242 Msa0211130:CDS 70.0%
GGGCGTGCCACGTGTCCCTT+GGG + chr2_1:51944224-51944243 Msa0211130:CDS 70.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 51943002 51944859 51943002 ID=Msa0211130;Name=Msa0211130
chr2_1 mRNA 51943002 51944859 51943002 ID=Msa0211130-mRNA-1;Parent=Msa0211130;Name=Msa0211130-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0.5|0.33|0.66|1|1|3|326|217
chr2_1 exon 51943002 51943008 51943002 ID=Msa0211130-mRNA-1:exon:14422;Parent=Msa0211130-mRNA-1
chr2_1 exon 51943350 51943512 51943350 ID=Msa0211130-mRNA-1:exon:14423;Parent=Msa0211130-mRNA-1
chr2_1 exon 51944050 51944859 51944050 ID=Msa0211130-mRNA-1:exon:14424;Parent=Msa0211130-mRNA-1
chr2_1 CDS 51943002 51943008 51943002 ID=Msa0211130-mRNA-1:cds;Parent=Msa0211130-mRNA-1
chr2_1 CDS 51943350 51943512 51943350 ID=Msa0211130-mRNA-1:cds;Parent=Msa0211130-mRNA-1
chr2_1 CDS 51944050 51944533 51944050 ID=Msa0211130-mRNA-1:cds;Parent=Msa0211130-mRNA-1
chr2_1 three_prime_UTR 51944534 51944859 51944534 ID=Msa0211130-mRNA-1:three_prime_utr;Parent=Msa0211130-mRNA-1
Gene Sequence

>Msa0211130

ATGCAAGGCAACCTTCAAACTCCAACTTCACAAGTTAACACACCATCAAGTGTTCAAGATAAACACCTTCCAAAGGATGAATTCTATGTAAACCTTGGACTTGCTGTGAGAACTCTTCGTGAAGACATGCCTATGATCTTCATCAAAGACCTCAATTATGATATCTATAGGGATGATATAACATTTTTGGACCCTTTGAACACATTTACTGGAATTCAAAAGTACAAATTGATCTTCTGGGCATTAAGGTTTCATGGAAAACTCTTGTTTCATGATATAGCACTTGATGTATATAGAGTGTGGCAACCTTCAAAGAATGTGATATGGATTAGGTGGAACCTTAAGGGCGTGCCACGTGTCCCTTGGGAAGCTAAAGGAGAATTTCAAGGTACTTCAAAGTATAAATTGGACAAGAAAGGCAAAATTTATGAACATAAAGTTGATAACTTGGCATTCAATTTTCCCAAAAATATTAAACCAGTTTCAGTTTTGGATTTTGTTACTTCATGCCCTGCTAGTCCAAACCCTACATTTGTGTGGGGTCCTGTGGATGTTTACTCTTCTTCATGGATAACTTTATATAAGGCAGTTAGGGAGACTTTGAAACAAGAAGGGAGTTTGCTACCACAAGATGGTCTAGCTCCATGCTCGTAA

Protein sequence

>Msa0211130

MQGNLQTPTSQVNTPSSVQDKHLPKDEFYVNLGLAVRTLREDMPMIFIKDLNYDIYRDDITFLDPLNTFTGIQKYKLIFWALRFHGKLLFHDIALDVYRVWQPSKNVIWIRWNLKGVPRVPWEAKGEFQGTSKYKLDKKGKIYEHKVDNLAFNFPKNIKPVSVLDFVTSCPASPNPTFVWGPVDVYSSSWITLYKAVRETLKQEGSLLPQDGLAPCS*