AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0328780


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0328780 MtrunA17_Chr2g0310191 92.509 267 12 1 1 259 1 267 5.19e-174 481
Msa0328780 MtrunA17_Chr8g0357051 70.916 251 68 3 14 259 18 268 2.58e-130 370
Msa0328780 MtrunA17_Chr8g0348061 57.792 154 63 1 70 221 92 245 1.78e-64 202
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0328780 AT1G79510.2 64.000 275 83 6 1 259 1 275 2.06e-116 336
Msa0328780 AT1G79510.1 64.000 275 83 6 1 259 1 275 2.06e-116 336
Msa0328780 AT1G16320.1 68.571 210 64 2 52 259 64 273 2.44e-107 313
Msa0328780 AT2G46220.1 55.414 157 68 1 67 221 81 237 1.38e-64 202

Find 77 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAAGTACAAATTGATCTTC+TGG 0.216595 2_4:-41611029 Msa0328780:CDS
GACCCTTTGAACACATTTAC+TGG 0.221962 2_4:-41611057 Msa0328780:CDS
AGGCACTTCAAAGTATAAAT+TGG 0.231544 2_4:-41610860 Msa0328780:CDS
AAAACCATTGAAGCATTAAA+AGG 0.244066 2_4:-41611898 Msa0328780:five_prime_UTR
AATTGATCTTCTGGGCATTA+AGG 0.256833 2_4:-41611020 Msa0328780:CDS
TTGGCGGAAGGGTTTGTCTT+TGG 0.282232 2_4:+41611821 None:intergenic
TATTAAACCAGTTTCAGTTT+TGG 0.296641 2_4:-41610776 Msa0328780:CDS
ATTGAAGCATTAAAAGGTTA+TGG 0.297451 2_4:-41611892 Msa0328780:exon
TTCATGGATAACTTTATATA+AGG 0.327641 2_4:-41610683 Msa0328780:CDS
TCATCCTTTGGAACACTTGA+TGG 0.334441 2_4:+41611690 None:intergenic
TAACTTTATATAAGGCAGTT+AGG 0.342291 2_4:-41610675 Msa0328780:CDS
TTCTGGGCATTAAGGTTTCA+TGG 0.351595 2_4:-41611012 Msa0328780:CDS
GGGAGATAAGGTTGGAGGTT+TGG 0.358908 2_4:+41611858 None:intergenic
AGGGCGTGCCGCGTGTCCCT+TGG 0.359335 2_4:-41610903 Msa0328780:CDS
AGAAAATGTGAAGTGGGTTT+TGG 0.372710 2_4:+41611786 None:intergenic
ACAAAATCCAAAACTGAAAC+TGG 0.373146 2_4:+41610769 None:intergenic
ATCCATATCACATTCTTTGA+AGG 0.378380 2_4:+41610940 None:intergenic
GCATGGAGCTAGACCATCTT+GGG 0.390373 2_4:+41610621 None:intergenic
GGGCGTGCCGCGTGTCCCTT+GGG 0.391041 2_4:-41610902 Msa0328780:CDS
AACCTTCAAAGAATGTGATA+TGG 0.392294 2_4:-41610942 Msa0328780:CDS
TTTGATTGAGTTGGGAGATA+AGG 0.392649 2_4:+41611846 None:intergenic
AGAAGAAGAATTTGAGGAAG+TGG 0.395061 2_4:+41611755 None:intergenic
CAAAGAATGTGATATGGATT+AGG 0.401184 2_4:-41610936 Msa0328780:CDS
ATGGATTAGGTGGAACCTTA+AGG 0.407766 2_4:-41610923 Msa0328780:CDS
TGGAGTTTGAAGGGTGGCTA+AGG 0.408366 2_4:+41611731 None:intergenic
AAAGTACAAATTGATCTTCT+GGG 0.411012 2_4:-41611028 Msa0328780:CDS
TGGATGTCTACTCTTCTTCA+TGG 0.415651 2_4:-41610699 Msa0328780:CDS
TTGACATAGAATTCATCCTT+TGG 0.416886 2_4:+41611678 None:intergenic
GGACACGCGGCACGCCCTTA+AGG 0.419205 2_4:+41610908 None:intergenic
ATTGAGTTGGGAGATAAGGT+TGG 0.424563 2_4:+41611850 None:intergenic
AATGTAGGGTTTGGACTAGC+AGG 0.427331 2_4:+41610736 None:intergenic
AACTTTATATAAGGCAGTTA+GGG 0.433549 2_4:-41610674 Msa0328780:CDS
AGGTCTTTGATGAAGATCAT+AGG 0.436047 2_4:+41611618 None:intergenic
GAAGTTGCTCATTCTGTTGT+TGG 0.439021 2_4:-41610224 Msa0328780:CDS
TGAACATAAAGTTGATAACT+TGG 0.441163 2_4:-41610818 Msa0328780:CDS
AGCATGGAGCTAGACCATCT+TGG 0.453020 2_4:+41610620 None:intergenic
GGTATGTTAACTTGTGAAGT+TGG 0.461906 2_4:+41611711 None:intergenic
ATTCCAGTAAATGTGTTCAA+AGG 0.467787 2_4:+41611054 None:intergenic
GAGTTGGGAGATAAGGTTGG+AGG 0.468771 2_4:+41611853 None:intergenic
TGGATTAGGTGGAACCTTAA+GGG 0.470608 2_4:-41610922 Msa0328780:CDS
TTCTTCCATGATAAGAGTGT+TGG 0.476413 2_4:-41610270 Msa0328780:intron
TTCCAGTAAATGTGTTCAAA+GGG 0.481927 2_4:+41611055 None:intergenic
ACCTCAATTATGATATCTAT+AGG 0.485916 2_4:-41611599 Msa0328780:intron
AGGGAGACTTTGAAACAAGA+AGG 0.486403 2_4:-41610655 Msa0328780:CDS
TAAGGGAGAAGAAGAATTTG+AGG 0.497045 2_4:+41611749 None:intergenic
GGAGTTTGAAGGGTGGCTAA+GGG 0.505819 2_4:+41611732 None:intergenic
GAAGCTAAAGGAGAATTTCA+AGG 0.512138 2_4:-41610880 Msa0328780:CDS
AAGTATAAATTGGACAAGAA+TGG 0.514460 2_4:-41610850 Msa0328780:CDS
GATACAAGAAAATGTGAAGT+GGG 0.517635 2_4:+41611780 None:intergenic
ACCTATAGATATCATAATTG+AGG 0.526885 2_4:+41611598 None:intergenic
GATGAATTCTATGTCAACCT+TGG 0.529105 2_4:-41611672 Msa0328780:CDS
CCATGATAAGAGTGTTGGAT+AGG 0.534103 2_4:-41610265 Msa0328780:intron
GATGAAAGAGTTTGGCGGAA+GGG 0.535062 2_4:+41611810 None:intergenic
CGTGTCCCTTGGGAAGCTAA+AGG 0.549445 2_4:-41610892 Msa0328780:CDS
AATTCTCCTTTAGCTTCCCA+AGG 0.554730 2_4:+41610886 None:intergenic
TTGTGAAGTTGGAGTTTGAA+GGG 0.561912 2_4:+41611722 None:intergenic
CTTGTGAAGTTGGAGTTTGA+AGG 0.564715 2_4:+41611721 None:intergenic
ATCATATCTATCATCAAACA+TGG 0.568770 2_4:+41610186 None:intergenic
AGAATGTGATATGGATTAGG+TGG 0.569695 2_4:-41610933 Msa0328780:CDS
GTTGCTCATTCTGTTGTTGG+AGG 0.574208 2_4:-41610221 Msa0328780:CDS
TGATGAAAGAGTTTGGCGGA+AGG 0.580705 2_4:+41611809 None:intergenic
GAAGAAGAGTAGACATCCAC+AGG 0.583593 2_4:+41610703 None:intergenic
AGATACAAGAAAATGTGAAG+TGG 0.591521 2_4:+41611779 None:intergenic
GAGTTCTCACAGCAAGTCCA+AGG 0.593055 2_4:+41611655 None:intergenic
GGGAGACTTTGAAACAAGAA+GGG 0.595464 2_4:-41610654 Msa0328780:CDS
GGGAGTTTGCTACCCCAAGA+TGG 0.596108 2_4:-41610634 Msa0328780:CDS
CATACCATCAAGTGTTCCAA+AGG 0.596681 2_4:-41611694 Msa0328780:CDS
ATAAGAGTGTTGGATAGGCA+AGG 0.615927 2_4:-41610260 Msa0328780:intron
ATTCTCCTTTAGCTTCCCAA+GGG 0.617667 2_4:+41610887 None:intergenic
ATAGACGTTACTTACGAGCA+TGG 0.619688 2_4:+41610604 None:intergenic
TTGGTGATGAAAGAGTTTGG+CGG 0.632810 2_4:+41611805 None:intergenic
ATGTAGGGTTTGGACTAGCA+GGG 0.639151 2_4:+41610737 None:intergenic
TTAGCTTCCCAAGGGACACG+CGG 0.642123 2_4:+41610895 None:intergenic
CACTTGATGTATATAGAGTG+TGG 0.642892 2_4:-41610966 Msa0328780:CDS
TCATATCTATCATCAAACAT+GGG 0.663659 2_4:+41610187 None:intergenic
TGAAGTTGGAGTTTGAAGGG+TGG 0.695576 2_4:+41611725 None:intergenic
CATGGAGCTAGACCATCTTG+GGG 0.703009 2_4:+41610622 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAGTGTTATTGTTAAATA+GGG + chr2_4:41610653-41610672 None:intergenic 15.0%
!!! AAATAGTGTTATTGTTAAAT+AGG + chr2_4:41610654-41610673 None:intergenic 15.0%
!! TATCAATAGTTTAATACTAT+TGG + chr2_4:41610883-41610902 None:intergenic 15.0%
!!! TTATTAAGTAGTGAATTTTA+AGG - chr2_4:41610993-41611012 Msa0328780:CDS 15.0%
!!! AATAGTGTTATTGTTAAATA+GGG + chr2_4:41610653-41610672 None:intergenic 15.0%
!!! AAATAGTGTTATTGTTAAAT+AGG + chr2_4:41610654-41610673 None:intergenic 15.0%
!! TATCAATAGTTTAATACTAT+TGG + chr2_4:41610883-41610902 None:intergenic 15.0%
!!! TTATTAAGTAGTGAATTTTA+AGG - chr2_4:41610993-41611012 Msa0328780:CDS 15.0%
!! AATTATGATATCTATAGGTT+AGG - chr2_4:41610532-41610551 Msa0328780:intron 20.0%
!! TTATAAGAAATGGTCAAATA+AGG + chr2_4:41610576-41610595 None:intergenic 20.0%
!! AAGAAGAAAGTTATAAGAAA+TGG + chr2_4:41610586-41610605 None:intergenic 20.0%
!! ATACAAAATGTACACATTAA+GGG + chr2_4:41610691-41610710 None:intergenic 20.0%
!! TATACAAAATGTACACATTA+AGG + chr2_4:41610692-41610711 None:intergenic 20.0%
!!! TTGAAATTTGATCAATTTTC+AGG - chr2_4:41611028-41611047 Msa0328780:CDS 20.0%
!!! TGAAATTTGATCAATTTTCA+GGG - chr2_4:41611029-41611048 Msa0328780:CDS 20.0%
!!! GAAACTGGTTTAATATTTTT+GGG + chr2_4:41611345-41611364 None:intergenic 20.0%
!!! TGAAACTGGTTTAATATTTT+TGG + chr2_4:41611346-41611365 None:intergenic 20.0%
!! TTCATGGATAACTTTATATA+AGG - chr2_4:41611443-41611462 Msa0328780:intron 20.0%
!! AATTATGATATCTATAGGTT+AGG - chr2_4:41610532-41610551 Msa0328780:intron 20.0%
!! TTATAAGAAATGGTCAAATA+AGG + chr2_4:41610576-41610595 None:intergenic 20.0%
!! AAGAAGAAAGTTATAAGAAA+TGG + chr2_4:41610586-41610605 None:intergenic 20.0%
!! ATACAAAATGTACACATTAA+GGG + chr2_4:41610691-41610710 None:intergenic 20.0%
!! TATACAAAATGTACACATTA+AGG + chr2_4:41610692-41610711 None:intergenic 20.0%
!!! TTGAAATTTGATCAATTTTC+AGG - chr2_4:41611028-41611047 Msa0328780:CDS 20.0%
!!! TGAAATTTGATCAATTTTCA+GGG - chr2_4:41611029-41611048 Msa0328780:CDS 20.0%
!!! GAAACTGGTTTAATATTTTT+GGG + chr2_4:41611345-41611364 None:intergenic 20.0%
!!! TGAAACTGGTTTAATATTTT+TGG + chr2_4:41611346-41611365 None:intergenic 20.0%
!! TTCATGGATAACTTTATATA+AGG - chr2_4:41611443-41611462 Msa0328780:intron 20.0%
!! AAAACCATTGAAGCATTAAA+AGG - chr2_4:41610228-41610247 Msa0328780:CDS 25.0%
!! ATAACCTTTTAATGCTTCAA+TGG + chr2_4:41610235-41610254 None:intergenic 25.0%
!! ATTGAAGCATTAAAAGGTTA+TGG - chr2_4:41610234-41610253 Msa0328780:CDS 25.0%
! ACCTCAATTATGATATCTAT+AGG - chr2_4:41610527-41610546 Msa0328780:intron 25.0%
! ACCTATAGATATCATAATTG+AGG + chr2_4:41610531-41610550 None:intergenic 25.0%
!! AAAAGTACAAATTGATCTTC+TGG - chr2_4:41611097-41611116 Msa0328780:intron 25.0%
! AAAGTACAAATTGATCTTCT+GGG - chr2_4:41611098-41611117 Msa0328780:intron 25.0%
! AAGTATAAATTGGACAAGAA+TGG - chr2_4:41611276-41611295 Msa0328780:intron 25.0%
!!! TGAACATAAAGTTGATAACT+TGG - chr2_4:41611308-41611327 Msa0328780:intron 25.0%
!! TATTAAACCAGTTTCAGTTT+TGG - chr2_4:41611350-41611369 Msa0328780:intron 25.0%
! TAACTTTATATAAGGCAGTT+AGG - chr2_4:41611451-41611470 Msa0328780:intron 25.0%
! AACTTTATATAAGGCAGTTA+GGG - chr2_4:41611452-41611471 Msa0328780:intron 25.0%
!! CCTCTACAACTTAAAATTTT+TGG + chr2_4:41611559-41611578 None:intergenic 25.0%
!!! CCAAAAATTTTAAGTTGTAG+AGG - chr2_4:41611556-41611575 Msa0328780:intron 25.0%
! ACTCGTATATATAAAGTTGT+AGG - chr2_4:41611662-41611681 Msa0328780:CDS 25.0%
! TATGATGTATAGTACAAGTT+AGG - chr2_4:41611706-41611725 Msa0328780:CDS 25.0%
! AATATTGAGTTTATCGATGT+CGG - chr2_4:41611755-41611774 Msa0328780:CDS 25.0%
! ATTAAGCTCAATTCTATACA+CGG + chr2_4:41611795-41611814 None:intergenic 25.0%
! TGTATAGAATTGAGCTTAAT+AGG - chr2_4:41611795-41611814 Msa0328780:CDS 25.0%
!! AAAACCATTGAAGCATTAAA+AGG - chr2_4:41610228-41610247 Msa0328780:CDS 25.0%
!! ATAACCTTTTAATGCTTCAA+TGG + chr2_4:41610235-41610254 None:intergenic 25.0%
!! ATTGAAGCATTAAAAGGTTA+TGG - chr2_4:41610234-41610253 Msa0328780:CDS 25.0%
! ACCTCAATTATGATATCTAT+AGG - chr2_4:41610527-41610546 Msa0328780:intron 25.0%
! ACCTATAGATATCATAATTG+AGG + chr2_4:41610531-41610550 None:intergenic 25.0%
!! AAAAGTACAAATTGATCTTC+TGG - chr2_4:41611097-41611116 Msa0328780:intron 25.0%
! AAAGTACAAATTGATCTTCT+GGG - chr2_4:41611098-41611117 Msa0328780:intron 25.0%
! AAGTATAAATTGGACAAGAA+TGG - chr2_4:41611276-41611295 Msa0328780:intron 25.0%
!!! TGAACATAAAGTTGATAACT+TGG - chr2_4:41611308-41611327 Msa0328780:intron 25.0%
!! TATTAAACCAGTTTCAGTTT+TGG - chr2_4:41611350-41611369 Msa0328780:intron 25.0%
! TAACTTTATATAAGGCAGTT+AGG - chr2_4:41611451-41611470 Msa0328780:intron 25.0%
! AACTTTATATAAGGCAGTTA+GGG - chr2_4:41611452-41611471 Msa0328780:intron 25.0%
!! CCTCTACAACTTAAAATTTT+TGG + chr2_4:41611559-41611578 None:intergenic 25.0%
!!! CCAAAAATTTTAAGTTGTAG+AGG - chr2_4:41611556-41611575 Msa0328780:intron 25.0%
! ACTCGTATATATAAAGTTGT+AGG - chr2_4:41611662-41611681 Msa0328780:CDS 25.0%
! TATGATGTATAGTACAAGTT+AGG - chr2_4:41611706-41611725 Msa0328780:CDS 25.0%
! AATATTGAGTTTATCGATGT+CGG - chr2_4:41611755-41611774 Msa0328780:CDS 25.0%
! ATTAAGCTCAATTCTATACA+CGG + chr2_4:41611795-41611814 None:intergenic 25.0%
! TGTATAGAATTGAGCTTAAT+AGG - chr2_4:41611795-41611814 Msa0328780:CDS 25.0%
!!! CTTTGGATTTTGATTGAGTT+GGG + chr2_4:41610291-41610310 None:intergenic 30.0%
!!! TCTTTGGATTTTGATTGAGT+TGG + chr2_4:41610292-41610311 None:intergenic 30.0%
GATACAAGAAAATGTGAAGT+GGG + chr2_4:41610349-41610368 None:intergenic 30.0%
AGATACAAGAAAATGTGAAG+TGG + chr2_4:41610350-41610369 None:intergenic 30.0%
TTGACATAGAATTCATCCTT+TGG + chr2_4:41610451-41610470 None:intergenic 30.0%
GTACACATTAAGGGTTAAAT+AGG + chr2_4:41610682-41610701 None:intergenic 30.0%
AAGCATCAAAATACTTGTCT+TGG + chr2_4:41610774-41610793 None:intergenic 30.0%
!!! AGACAAGTATTTTGATGCTT+AGG - chr2_4:41610774-41610793 Msa0328780:CDS 30.0%
! CAGGGATGATATAACATTTT+TGG - chr2_4:41611047-41611066 Msa0328780:CDS 30.0%
TTCCAGTAAATGTGTTCAAA+GGG + chr2_4:41611074-41611093 None:intergenic 30.0%
ATTCCAGTAAATGTGTTCAA+AGG + chr2_4:41611075-41611094 None:intergenic 30.0%
AACCTTCAAAGAATGTGATA+TGG - chr2_4:41611184-41611203 Msa0328780:intron 30.0%
ATCCATATCACATTCTTTGA+AGG + chr2_4:41611189-41611208 None:intergenic 30.0%
CAAAGAATGTGATATGGATT+AGG - chr2_4:41611190-41611209 Msa0328780:intron 30.0%
AGGCACTTCAAAGTATAAAT+TGG - chr2_4:41611266-41611285 Msa0328780:intron 30.0%
ACAAAATCCAAAACTGAAAC+TGG + chr2_4:41611360-41611379 None:intergenic 30.0%
AGTGATACTCGTATAAATCA+AGG - chr2_4:41611606-41611625 Msa0328780:CDS 30.0%
ATACTCGTATAAATCAAGGA+TGG - chr2_4:41611610-41611629 Msa0328780:CDS 30.0%
AGGTTAGATATGATGAATTG+TGG - chr2_4:41611815-41611834 Msa0328780:CDS 30.0%
!!! CTTTGGATTTTGATTGAGTT+GGG + chr2_4:41610291-41610310 None:intergenic 30.0%
!!! TCTTTGGATTTTGATTGAGT+TGG + chr2_4:41610292-41610311 None:intergenic 30.0%
GATACAAGAAAATGTGAAGT+GGG + chr2_4:41610349-41610368 None:intergenic 30.0%
AGATACAAGAAAATGTGAAG+TGG + chr2_4:41610350-41610369 None:intergenic 30.0%
TTGACATAGAATTCATCCTT+TGG + chr2_4:41610451-41610470 None:intergenic 30.0%
GTACACATTAAGGGTTAAAT+AGG + chr2_4:41610682-41610701 None:intergenic 30.0%
AAGCATCAAAATACTTGTCT+TGG + chr2_4:41610774-41610793 None:intergenic 30.0%
!!! AGACAAGTATTTTGATGCTT+AGG - chr2_4:41610774-41610793 Msa0328780:CDS 30.0%
! CAGGGATGATATAACATTTT+TGG - chr2_4:41611047-41611066 Msa0328780:CDS 30.0%
TTCCAGTAAATGTGTTCAAA+GGG + chr2_4:41611074-41611093 None:intergenic 30.0%
ATTCCAGTAAATGTGTTCAA+AGG + chr2_4:41611075-41611094 None:intergenic 30.0%
AACCTTCAAAGAATGTGATA+TGG - chr2_4:41611184-41611203 Msa0328780:intron 30.0%
ATCCATATCACATTCTTTGA+AGG + chr2_4:41611189-41611208 None:intergenic 30.0%
CAAAGAATGTGATATGGATT+AGG - chr2_4:41611190-41611209 Msa0328780:intron 30.0%
AGGCACTTCAAAGTATAAAT+TGG - chr2_4:41611266-41611285 Msa0328780:intron 30.0%
ACAAAATCCAAAACTGAAAC+TGG + chr2_4:41611360-41611379 None:intergenic 30.0%
AGTGATACTCGTATAAATCA+AGG - chr2_4:41611606-41611625 Msa0328780:CDS 30.0%
ATACTCGTATAAATCAAGGA+TGG - chr2_4:41611610-41611629 Msa0328780:CDS 30.0%
AGGTTAGATATGATGAATTG+TGG - chr2_4:41611815-41611834 Msa0328780:CDS 30.0%
!! TTTGATTGAGTTGGGAGATA+AGG + chr2_4:41610283-41610302 None:intergenic 35.0%
!!! GTTTTGGTGATGAAAGAGTT+TGG + chr2_4:41610327-41610346 None:intergenic 35.0%
!! AGAAAATGTGAAGTGGGTTT+TGG + chr2_4:41610343-41610362 None:intergenic 35.0%
AGAAGAAGAATTTGAGGAAG+TGG + chr2_4:41610374-41610393 None:intergenic 35.0%
TAAGGGAGAAGAAGAATTTG+AGG + chr2_4:41610380-41610399 None:intergenic 35.0%
TTGTGAAGTTGGAGTTTGAA+GGG + chr2_4:41610407-41610426 None:intergenic 35.0%
!! GGTATGTTAACTTGTGAAGT+TGG + chr2_4:41610418-41610437 None:intergenic 35.0%
GATGAATTCTATGTCAACCT+TGG - chr2_4:41610454-41610473 Msa0328780:intron 35.0%
AGGTCTTTGATGAAGATCAT+AGG + chr2_4:41610511-41610530 None:intergenic 35.0%
AATTGATCTTCTGGGCATTA+AGG - chr2_4:41611106-41611125 Msa0328780:intron 35.0%
CACTTGATGTATATAGAGTG+TGG - chr2_4:41611160-41611179 Msa0328780:intron 35.0%
!! AGAATGTGATATGGATTAGG+TGG - chr2_4:41611193-41611212 Msa0328780:intron 35.0%
GAAGCTAAAGGAGAATTTCA+AGG - chr2_4:41611246-41611265 Msa0328780:intron 35.0%
! TCCAAACCCTACATTTTTGT+GGG - chr2_4:41611398-41611417 Msa0328780:intron 35.0%
AATTGTGGCATAGCATGAAT+TGG - chr2_4:41611830-41611849 Msa0328780:CDS 35.0%
! TTCTTCCATGATAAGAGTGT+TGG - chr2_4:41611856-41611875 Msa0328780:CDS 35.0%
!! TTTGATTGAGTTGGGAGATA+AGG + chr2_4:41610283-41610302 None:intergenic 35.0%
!!! GTTTTGGTGATGAAAGAGTT+TGG + chr2_4:41610327-41610346 None:intergenic 35.0%
!! AGAAAATGTGAAGTGGGTTT+TGG + chr2_4:41610343-41610362 None:intergenic 35.0%
AGAAGAAGAATTTGAGGAAG+TGG + chr2_4:41610374-41610393 None:intergenic 35.0%
TAAGGGAGAAGAAGAATTTG+AGG + chr2_4:41610380-41610399 None:intergenic 35.0%
TTGTGAAGTTGGAGTTTGAA+GGG + chr2_4:41610407-41610426 None:intergenic 35.0%
!! GGTATGTTAACTTGTGAAGT+TGG + chr2_4:41610418-41610437 None:intergenic 35.0%
GATGAATTCTATGTCAACCT+TGG - chr2_4:41610454-41610473 Msa0328780:intron 35.0%
AGGTCTTTGATGAAGATCAT+AGG + chr2_4:41610511-41610530 None:intergenic 35.0%
AATTGATCTTCTGGGCATTA+AGG - chr2_4:41611106-41611125 Msa0328780:intron 35.0%
CACTTGATGTATATAGAGTG+TGG - chr2_4:41611160-41611179 Msa0328780:intron 35.0%
!! AGAATGTGATATGGATTAGG+TGG - chr2_4:41611193-41611212 Msa0328780:intron 35.0%
GAAGCTAAAGGAGAATTTCA+AGG - chr2_4:41611246-41611265 Msa0328780:intron 35.0%
! TCCAAACCCTACATTTTTGT+GGG - chr2_4:41611398-41611417 Msa0328780:intron 35.0%
AATTGTGGCATAGCATGAAT+TGG - chr2_4:41611830-41611849 Msa0328780:CDS 35.0%
! TTCTTCCATGATAAGAGTGT+TGG - chr2_4:41611856-41611875 Msa0328780:CDS 35.0%
!! ATTGAGTTGGGAGATAAGGT+TGG + chr2_4:41610279-41610298 None:intergenic 40.0%
!! TTGGTGATGAAAGAGTTTGG+CGG + chr2_4:41610324-41610343 None:intergenic 40.0%
CTTGTGAAGTTGGAGTTTGA+AGG + chr2_4:41610408-41610427 None:intergenic 40.0%
CATACCATCAAGTGTTCCAA+AGG - chr2_4:41610432-41610451 Msa0328780:intron 40.0%
!! TCATCCTTTGGAACACTTGA+TGG + chr2_4:41610439-41610458 None:intergenic 40.0%
TGATGCTTAGGAGTTGAACT+TGG - chr2_4:41610786-41610805 Msa0328780:CDS 40.0%
GACCCTTTGAACACATTTAC+TGG - chr2_4:41611069-41611088 Msa0328780:CDS 40.0%
TTCTGGGCATTAAGGTTTCA+TGG - chr2_4:41611114-41611133 Msa0328780:intron 40.0%
!! ATGGATTAGGTGGAACCTTA+AGG - chr2_4:41611203-41611222 Msa0328780:intron 40.0%
! TGGATTAGGTGGAACCTTAA+GGG - chr2_4:41611204-41611223 Msa0328780:intron 40.0%
! ATTCTCCTTTAGCTTCCCAA+GGG + chr2_4:41611242-41611261 None:intergenic 40.0%
! AATTCTCCTTTAGCTTCCCA+AGG + chr2_4:41611243-41611262 None:intergenic 40.0%
! GTCCAAACCCTACATTTTTG+TGG - chr2_4:41611397-41611416 Msa0328780:intron 40.0%
! CCAAACCCTACATTTTTGTG+GGG - chr2_4:41611399-41611418 Msa0328780:intron 40.0%
TGGATGTCTACTCTTCTTCA+TGG - chr2_4:41611427-41611446 Msa0328780:intron 40.0%
!! AGGGAGACTTTGAAACAAGA+AGG - chr2_4:41611471-41611490 Msa0328780:intron 40.0%
!! GGGAGACTTTGAAACAAGAA+GGG - chr2_4:41611472-41611491 Msa0328780:intron 40.0%
ATAGACGTTACTTACGAGCA+TGG + chr2_4:41611525-41611544 None:intergenic 40.0%
CTCGTAAGTAACGTCTATCA+GGG - chr2_4:41611527-41611546 Msa0328780:intron 40.0%
TAAGTAACGTCTATCAGGGA+CGG - chr2_4:41611531-41611550 Msa0328780:intron 40.0%
CCTCTGCAGCTTAAAATTTC+TGG + chr2_4:41611638-41611657 None:intergenic 40.0%
! CCAGAAATTTTAAGCTGCAG+AGG - chr2_4:41611635-41611654 Msa0328780:CDS 40.0%
CCTATCCAACACTCTTATCA+TGG + chr2_4:41611864-41611883 None:intergenic 40.0%
!! CCATGATAAGAGTGTTGGAT+AGG - chr2_4:41611861-41611880 Msa0328780:CDS 40.0%
!! ATAAGAGTGTTGGATAGGCA+AGG - chr2_4:41611866-41611885 Msa0328780:CDS 40.0%
GAAGTTGCTCATTCTGTTGT+TGG - chr2_4:41611902-41611921 Msa0328780:five_prime_UTR 40.0%
!! ATTGAGTTGGGAGATAAGGT+TGG + chr2_4:41610279-41610298 None:intergenic 40.0%
!! TTGGTGATGAAAGAGTTTGG+CGG + chr2_4:41610324-41610343 None:intergenic 40.0%
CTTGTGAAGTTGGAGTTTGA+AGG + chr2_4:41610408-41610427 None:intergenic 40.0%
CATACCATCAAGTGTTCCAA+AGG - chr2_4:41610432-41610451 Msa0328780:intron 40.0%
!! TCATCCTTTGGAACACTTGA+TGG + chr2_4:41610439-41610458 None:intergenic 40.0%
TGATGCTTAGGAGTTGAACT+TGG - chr2_4:41610786-41610805 Msa0328780:CDS 40.0%
GACCCTTTGAACACATTTAC+TGG - chr2_4:41611069-41611088 Msa0328780:CDS 40.0%
TTCTGGGCATTAAGGTTTCA+TGG - chr2_4:41611114-41611133 Msa0328780:intron 40.0%
!! ATGGATTAGGTGGAACCTTA+AGG - chr2_4:41611203-41611222 Msa0328780:intron 40.0%
! TGGATTAGGTGGAACCTTAA+GGG - chr2_4:41611204-41611223 Msa0328780:intron 40.0%
! ATTCTCCTTTAGCTTCCCAA+GGG + chr2_4:41611242-41611261 None:intergenic 40.0%
! AATTCTCCTTTAGCTTCCCA+AGG + chr2_4:41611243-41611262 None:intergenic 40.0%
! GTCCAAACCCTACATTTTTG+TGG - chr2_4:41611397-41611416 Msa0328780:intron 40.0%
! CCAAACCCTACATTTTTGTG+GGG - chr2_4:41611399-41611418 Msa0328780:intron 40.0%
TGGATGTCTACTCTTCTTCA+TGG - chr2_4:41611427-41611446 Msa0328780:intron 40.0%
!! AGGGAGACTTTGAAACAAGA+AGG - chr2_4:41611471-41611490 Msa0328780:intron 40.0%
!! GGGAGACTTTGAAACAAGAA+GGG - chr2_4:41611472-41611491 Msa0328780:intron 40.0%
ATAGACGTTACTTACGAGCA+TGG + chr2_4:41611525-41611544 None:intergenic 40.0%
CTCGTAAGTAACGTCTATCA+GGG - chr2_4:41611527-41611546 Msa0328780:intron 40.0%
TAAGTAACGTCTATCAGGGA+CGG - chr2_4:41611531-41611550 Msa0328780:intron 40.0%
CCTCTGCAGCTTAAAATTTC+TGG + chr2_4:41611638-41611657 None:intergenic 40.0%
! CCAGAAATTTTAAGCTGCAG+AGG - chr2_4:41611635-41611654 Msa0328780:CDS 40.0%
CCTATCCAACACTCTTATCA+TGG + chr2_4:41611864-41611883 None:intergenic 40.0%
!! CCATGATAAGAGTGTTGGAT+AGG - chr2_4:41611861-41611880 Msa0328780:CDS 40.0%
!! ATAAGAGTGTTGGATAGGCA+AGG - chr2_4:41611866-41611885 Msa0328780:CDS 40.0%
GAAGTTGCTCATTCTGTTGT+TGG - chr2_4:41611902-41611921 Msa0328780:five_prime_UTR 40.0%
GATGAAAGAGTTTGGCGGAA+GGG + chr2_4:41610319-41610338 None:intergenic 45.0%
TGATGAAAGAGTTTGGCGGA+AGG + chr2_4:41610320-41610339 None:intergenic 45.0%
TGAAGTTGGAGTTTGAAGGG+TGG + chr2_4:41610404-41610423 None:intergenic 45.0%
! GGTTGGTACATATGGTGTGT+CGG + chr2_4:41610846-41610865 None:intergenic 45.0%
!! ATGTAGGGTTTGGACTAGCA+GGG + chr2_4:41611392-41611411 None:intergenic 45.0%
!! AATGTAGGGTTTGGACTAGC+AGG + chr2_4:41611393-41611412 None:intergenic 45.0%
CCCCACAAAAATGTAGGGTT+TGG + chr2_4:41611402-41611421 None:intergenic 45.0%
CAGGACCCCACAAAAATGTA+GGG + chr2_4:41611407-41611426 None:intergenic 45.0%
ACAGGACCCCACAAAAATGT+AGG + chr2_4:41611408-41611427 None:intergenic 45.0%
! TACATTTTTGTGGGGTCCTG+TGG - chr2_4:41611407-41611426 Msa0328780:intron 45.0%
GAAGAAGAGTAGACATCCAC+AGG + chr2_4:41611426-41611445 None:intergenic 45.0%
GCTCGTAAGTAACGTCTATC+AGG - chr2_4:41611526-41611545 Msa0328780:intron 45.0%
! GTTTATCGATGTCGGCTATG+TGG - chr2_4:41611763-41611782 Msa0328780:CDS 45.0%
AGCTCAATTCTATACACGGC+CGG + chr2_4:41611791-41611810 None:intergenic 45.0%
GTTGCTCATTCTGTTGTTGG+AGG - chr2_4:41611905-41611924 Msa0328780:five_prime_UTR 45.0%
GATGAAAGAGTTTGGCGGAA+GGG + chr2_4:41610319-41610338 None:intergenic 45.0%
TGATGAAAGAGTTTGGCGGA+AGG + chr2_4:41610320-41610339 None:intergenic 45.0%
TGAAGTTGGAGTTTGAAGGG+TGG + chr2_4:41610404-41610423 None:intergenic 45.0%
! GGTTGGTACATATGGTGTGT+CGG + chr2_4:41610846-41610865 None:intergenic 45.0%
!! ATGTAGGGTTTGGACTAGCA+GGG + chr2_4:41611392-41611411 None:intergenic 45.0%
!! AATGTAGGGTTTGGACTAGC+AGG + chr2_4:41611393-41611412 None:intergenic 45.0%
CCCCACAAAAATGTAGGGTT+TGG + chr2_4:41611402-41611421 None:intergenic 45.0%
CAGGACCCCACAAAAATGTA+GGG + chr2_4:41611407-41611426 None:intergenic 45.0%
ACAGGACCCCACAAAAATGT+AGG + chr2_4:41611408-41611427 None:intergenic 45.0%
! TACATTTTTGTGGGGTCCTG+TGG - chr2_4:41611407-41611426 Msa0328780:intron 45.0%
GAAGAAGAGTAGACATCCAC+AGG + chr2_4:41611426-41611445 None:intergenic 45.0%
GCTCGTAAGTAACGTCTATC+AGG - chr2_4:41611526-41611545 Msa0328780:intron 45.0%
! GTTTATCGATGTCGGCTATG+TGG - chr2_4:41611763-41611782 Msa0328780:CDS 45.0%
AGCTCAATTCTATACACGGC+CGG + chr2_4:41611791-41611810 None:intergenic 45.0%
GTTGCTCATTCTGTTGTTGG+AGG - chr2_4:41611905-41611924 Msa0328780:five_prime_UTR 45.0%
!! TTATATATATTGTTATATAT+CGG + chr2_4:41611737-41611756 None:intergenic 5.0%
!! TTATATATATTGTTATATAT+CGG + chr2_4:41611737-41611756 None:intergenic 5.0%
GGGAGATAAGGTTGGAGGTT+TGG + chr2_4:41610271-41610290 None:intergenic 50.0%
GAGTTGGGAGATAAGGTTGG+AGG + chr2_4:41610276-41610295 None:intergenic 50.0%
TTGGCGGAAGGGTTTGTCTT+TGG + chr2_4:41610308-41610327 None:intergenic 50.0%
GGAGTTTGAAGGGTGGCTAA+GGG + chr2_4:41610397-41610416 None:intergenic 50.0%
TGGAGTTTGAAGGGTGGCTA+AGG + chr2_4:41610398-41610417 None:intergenic 50.0%
GAGTTCTCACAGCAAGTCCA+AGG + chr2_4:41610474-41610493 None:intergenic 50.0%
! GCGCAAGTGGTTGGTACATA+TGG + chr2_4:41610854-41610873 None:intergenic 50.0%
CTATTGGAGTCTAGCGCAAG+TGG + chr2_4:41610867-41610886 None:intergenic 50.0%
CATGGAGCTAGACCATCTTG+GGG + chr2_4:41611507-41611526 None:intergenic 50.0%
GCATGGAGCTAGACCATCTT+GGG + chr2_4:41611508-41611527 None:intergenic 50.0%
AGCATGGAGCTAGACCATCT+TGG + chr2_4:41611509-41611528 None:intergenic 50.0%
GGGAGATAAGGTTGGAGGTT+TGG + chr2_4:41610271-41610290 None:intergenic 50.0%
GAGTTGGGAGATAAGGTTGG+AGG + chr2_4:41610276-41610295 None:intergenic 50.0%
TTGGCGGAAGGGTTTGTCTT+TGG + chr2_4:41610308-41610327 None:intergenic 50.0%
GGAGTTTGAAGGGTGGCTAA+GGG + chr2_4:41610397-41610416 None:intergenic 50.0%
TGGAGTTTGAAGGGTGGCTA+AGG + chr2_4:41610398-41610417 None:intergenic 50.0%
GAGTTCTCACAGCAAGTCCA+AGG + chr2_4:41610474-41610493 None:intergenic 50.0%
! GCGCAAGTGGTTGGTACATA+TGG + chr2_4:41610854-41610873 None:intergenic 50.0%
CTATTGGAGTCTAGCGCAAG+TGG + chr2_4:41610867-41610886 None:intergenic 50.0%
CATGGAGCTAGACCATCTTG+GGG + chr2_4:41611507-41611526 None:intergenic 50.0%
GCATGGAGCTAGACCATCTT+GGG + chr2_4:41611508-41611527 None:intergenic 50.0%
AGCATGGAGCTAGACCATCT+TGG + chr2_4:41611509-41611528 None:intergenic 50.0%
TGGAGTCTAGCGCAAGTGGT+TGG + chr2_4:41610863-41610882 None:intergenic 55.0%
TTAGCTTCCCAAGGGACACG+CGG + chr2_4:41611234-41611253 None:intergenic 55.0%
CGTGTCCCTTGGGAAGCTAA+AGG - chr2_4:41611234-41611253 Msa0328780:intron 55.0%
!! GGGAGTTTGCTACCCCAAGA+TGG - chr2_4:41611492-41611511 Msa0328780:intron 55.0%
! CGATGTCGGCTATGTGGATC+CGG - chr2_4:41611769-41611788 Msa0328780:CDS 55.0%
TGGAGTCTAGCGCAAGTGGT+TGG + chr2_4:41610863-41610882 None:intergenic 55.0%
TTAGCTTCCCAAGGGACACG+CGG + chr2_4:41611234-41611253 None:intergenic 55.0%
CGTGTCCCTTGGGAAGCTAA+AGG - chr2_4:41611234-41611253 Msa0328780:intron 55.0%
!! GGGAGTTTGCTACCCCAAGA+TGG - chr2_4:41611492-41611511 Msa0328780:intron 55.0%
! CGATGTCGGCTATGTGGATC+CGG - chr2_4:41611769-41611788 Msa0328780:CDS 55.0%
GGACACGCGGCACGCCCTTA+AGG + chr2_4:41611221-41611240 None:intergenic 70.0%
GGACACGCGGCACGCCCTTA+AGG + chr2_4:41611221-41611240 None:intergenic 70.0%
AGGGCGTGCCGCGTGTCCCT+TGG - chr2_4:41611223-41611242 Msa0328780:intron 75.0%
GGGCGTGCCGCGTGTCCCTT+GGG - chr2_4:41611224-41611243 Msa0328780:intron 75.0%
AGGGCGTGCCGCGTGTCCCT+TGG - chr2_4:41611223-41611242 Msa0328780:intron 75.0%
GGGCGTGCCGCGTGTCCCTT+GGG - chr2_4:41611224-41611243 Msa0328780:intron 75.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 41610199 41611949 41610199 ID=Msa0328780;Name=Msa0328780
chr2_4 mRNA 41610199 41611949 41610199 ID=Msa0328780-mRNA-1;Parent=Msa0328780;Name=Msa0328780-mRNA-1;_AED=0.17;_eAED=0.17;_QI=54|0.5|0.33|1|1|1|3|0|284
chr2_4 exon 41610199 41610277 41610199 ID=Msa0328780-mRNA-1:exon:12827;Parent=Msa0328780-mRNA-1
chr2_4 exon 41610619 41611098 41610619 ID=Msa0328780-mRNA-1:exon:12826;Parent=Msa0328780-mRNA-1
chr2_4 exon 41611600 41611949 41611600 ID=Msa0328780-mRNA-1:exon:12825;Parent=Msa0328780-mRNA-1
chr2_4 five_prime_UTR 41611896 41611949 41611896 ID=Msa0328780-mRNA-1:five_prime_utr;Parent=Msa0328780-mRNA-1
chr2_4 CDS 41611600 41611895 41611600 ID=Msa0328780-mRNA-1:cds;Parent=Msa0328780-mRNA-1
chr2_4 CDS 41610619 41611098 41610619 ID=Msa0328780-mRNA-1:cds;Parent=Msa0328780-mRNA-1
chr2_4 CDS 41610199 41610277 41610199 ID=Msa0328780-mRNA-1:cds;Parent=Msa0328780-mRNA-1
Gene Sequence

>Msa0328780

ATGGCTTTTCTTCTACCAAACCTCCAACCTTATCTCCCAACTCAATCAAAATCCAAAGACAAACCCTTCCGCCAAACTCTTTCATCACCAAAACCCACTTCACATTTTCTTGTATCTTCCACTTCCTCAAATTCTTCTTCTCCCTTAGCCACCCTTCAAACTCCAACTTCACAAGTTAACATACCATCAAGTGTTCCAAAGGATGAATTCTATGTCAACCTTGGACTTGCTGTGAGAACTCTTCGTGAAGACATGCCTATGATCTTCATCAAAGACCTCAATTATGATATCTATAGGGATGATATAACATTTTTGGACCCTTTGAACACATTTACTGGAATTGAAAAGTACAAATTGATCTTCTGGGCATTAAGGTTTCATGGTAAGCTCTTGTTTCATGATATAGCACTTGATGTATATAGAGTGTGGCAACCTTCAAAGAATGTGATATGGATTAGGTGGAACCTTAAGGGCGTGCCGCGTGTCCCTTGGGAAGCTAAAGGAGAATTTCAAGGCACTTCAAAGTATAAATTGGACAAGAATGGCAAAATTTATGAACATAAAGTTGATAACTTGGCATTCAATTTTCCCAAAAATATTAAACCAGTTTCAGTTTTGGATTTTGTTACTTCATGCCCTGCTAGTCCAAACCCTACATTTTTGTGGGGTCCTGTGGATGTCTACTCTTCTTCATGGATAACTTTATATAAGGCAGTTAGGGAGACTTTGAAACAAGAAGGGAGTTTGCTACCCCAAGATGGTCTAGCTCCATGCTCAGTGTTGGATAGGCAAGGATTCAGAAGAGTTGAAGTTGCTCATTCTGTTGTTGGAGGAAATGTAGATTCCCATGTTTGA

Protein sequence

>Msa0328780

MAFLLPNLQPYLPTQSKSKDKPFRQTLSSPKPTSHFLVSSTSSNSSSPLATLQTPTSQVNIPSSVPKDEFYVNLGLAVRTLREDMPMIFIKDLNYDIYRDDITFLDPLNTFTGIEKYKLIFWALRFHGKLLFHDIALDVYRVWQPSKNVIWIRWNLKGVPRVPWEAKGEFQGTSKYKLDKNGKIYEHKVDNLAFNFPKNIKPVSVLDFVTSCPASPNPTFLWGPVDVYSSSWITLYKAVRETLKQEGSLLPQDGLAPCSVLDRQGFRRVEVAHSVVGGNVDSHV*