AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1192680


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1192680 MtrunA17_Chr8g0371771 99.026 308 3 0 1 308 1 308 0.0 622
Msa1192680 MtrunA17_Chr5g0405611 62.461 317 101 5 1 304 66 377 8.82e-141 402
Msa1192680 MtrunA17_Chr4g0037331 68.644 236 70 2 11 243 5 239 4.77e-116 338
Msa1192680 MtrunA17_Chr1g0156711 62.249 249 84 5 14 252 6 254 2.14e-100 297
Msa1192680 MtrunA17_Chr3g0142781 57.795 263 99 6 8 258 3 265 6.97e-97 288
Msa1192680 MtrunA17_Chr8g0352471 55.682 264 104 7 10 263 4 264 5.42e-93 278
Msa1192680 MtrunA17_Chr4g0037351 52.830 265 109 6 13 262 3 266 5.74e-88 266
Msa1192680 MtrunA17_Chr5g0405581 55.598 259 98 8 10 252 3 260 1.40e-87 264
Msa1192680 MtrunA17_Chr8g0371781 57.917 240 85 6 28 252 25 263 4.19e-87 263
Msa1192680 MtrunA17_Chr6g0482741 54.357 241 98 6 13 244 3 240 1.49e-86 259
Msa1192680 MtrunA17_Chr7g0265011 48.800 250 119 4 5 246 41 289 1.38e-83 253
Msa1192680 MtrunA17_Chr8g0351851 56.466 232 92 5 19 243 8 237 4.14e-83 250
Msa1192680 MtrunA17_Chr1g0154591 57.265 234 88 6 23 247 5 235 9.72e-82 247
Msa1192680 MtrunA17_Chr8g0357311 52.016 248 108 6 15 253 11 256 3.47e-81 246
Msa1192680 MtrunA17_Chr5g0428801 52.964 253 99 8 8 247 8 253 6.46e-81 248
Msa1192680 MtrunA17_Chr3g0141341 56.118 237 92 7 20 247 1 234 7.28e-81 244
Msa1192680 MtrunA17_Chr8g0392961 54.812 239 97 5 14 244 10 245 3.88e-80 243
Msa1192680 MtrunA17_Chr1g0180121 50.847 236 107 4 17 244 8 242 7.02e-79 240
Msa1192680 MtrunA17_Chr1g0180161 48.729 236 112 4 19 246 10 244 1.83e-76 234
Msa1192680 MtrunA17_Chr1g0180231 50.420 238 109 4 17 246 8 244 4.37e-76 233
Msa1192680 MtrunA17_Chr1g0179871 50.420 238 109 4 17 246 8 244 4.37e-76 233
Msa1192680 MtrunA17_Chr5g0424221 46.442 267 133 6 15 276 13 274 4.77e-76 234
Msa1192680 MtrunA17_Chr2g0312181 48.536 239 112 4 17 244 5 243 8.58e-76 232
Msa1192680 MtrunA17_Chr1g0180221 49.383 243 114 4 12 246 43 284 8.65e-76 233
Msa1192680 MtrunA17_Chr1g0179891 50.427 234 107 4 21 246 7 239 1.27e-75 231
Msa1192680 MtrunA17_Chr1g0179851 48.760 242 113 5 15 246 1 241 4.11e-75 230
Msa1192680 MtrunA17_Chr2g0311521 46.538 260 117 7 27 274 20 269 3.95e-67 226
Msa1192680 MtrunA17_Chr3g0112091 46.862 239 116 7 15 244 1 237 1.32e-66 208
Msa1192680 MtrunA17_Chr2g0311551 48.052 231 109 6 33 253 25 254 3.28e-64 218
Msa1192680 MtrunA17_Chr2g0311561 45.532 235 118 6 21 246 1 234 2.37e-63 202
Msa1192680 MtrunA17_Chr7g0239131 43.697 238 124 5 15 244 7 242 6.04e-62 196
Msa1192680 MtrunA17_Chr6g0452331 44.309 246 120 9 15 245 10 253 2.95e-58 188
Msa1192680 MtrunA17_Chr4g0031221 40.664 241 125 8 15 243 17 251 3.94e-54 177
Msa1192680 MtrunA17_Chr5g0397821 42.795 229 107 9 29 251 22 232 4.39e-50 166
Msa1192680 MtrunA17_Chr5g0397831 41.350 237 120 8 16 244 11 236 7.08e-50 165
Msa1192680 MtrunA17_Chr8g0386341 41.880 234 115 11 14 244 33 248 1.59e-48 162
Msa1192680 MtrunA17_Chr2g0311531 41.176 221 108 8 28 246 24 224 2.35e-45 154
Msa1192680 MtrunA17_Chr5g0406771 48.571 175 77 6 19 182 3 175 1.45e-44 149
Msa1192680 MtrunA17_Chr2g0311501 40.642 187 101 6 69 247 1 185 1.40e-40 140
Msa1192680 MtrunA17_Chr2g0309611 32.653 245 142 8 14 242 12 249 1.10e-35 129
Msa1192680 MtrunA17_Chr1g0179911 33.884 242 141 7 13 245 8 239 5.91e-35 127
Msa1192680 MtrunA17_Chr8g0386351 42.073 164 83 8 6 167 39 192 5.92e-30 113
Msa1192680 MtrunA17_Chr1g0180181 54.762 84 34 1 167 246 18 101 5.36e-23 91.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1192680 AT4G38660.1 52.286 350 115 7 1 305 2 344 1.61e-113 332
Msa1192680 AT4G38660.2 55.000 320 94 6 31 305 8 322 1.15e-111 327
Msa1192680 AT4G24180.1 57.191 299 111 8 1 284 1 297 4.78e-109 320
Msa1192680 AT4G24180.2 57.576 297 108 9 1 284 1 292 2.17e-108 318
Msa1192680 AT4G24180.6 62.403 258 83 6 1 245 1 257 7.47e-107 312
Msa1192680 AT4G24180.5 62.891 256 80 7 1 245 1 252 4.96e-106 310
Msa1192680 AT4G24180.3 60.166 241 83 5 1 228 1 241 2.30e-96 288
Msa1192680 AT4G24180.4 60.669 239 80 6 1 228 1 236 1.51e-95 285
Msa1192680 AT1G20030.2 60.417 240 83 4 28 255 17 256 7.74e-93 278
Msa1192680 AT1G20030.1 61.441 236 79 4 32 255 4 239 9.17e-93 278
Msa1192680 AT1G75800.1 55.859 256 101 4 15 258 7 262 4.51e-92 277
Msa1192680 AT1G75030.1 55.020 249 98 7 8 247 3 246 1.52e-85 257
Msa1192680 AT1G75050.1 55.556 243 96 7 14 247 7 246 1.20e-84 255
Msa1192680 AT4G36010.1 57.083 240 87 6 28 252 20 258 1.40e-83 254
Msa1192680 AT4G36010.2 57.083 240 87 6 28 252 20 258 1.40e-83 254
Msa1192680 AT1G19320.1 53.755 253 100 7 1 243 1 246 1.81e-83 252
Msa1192680 AT2G17860.1 55.510 245 94 6 17 247 9 252 3.04e-83 251
Msa1192680 AT1G75040.1 54.852 237 97 6 14 244 7 239 7.66e-81 245
Msa1192680 AT4G38670.3 50.758 264 116 7 12 262 3 265 1.48e-80 246
Msa1192680 AT4G38670.1 50.758 264 116 7 12 262 3 265 1.48e-80 246
Msa1192680 AT1G73620.1 55.357 224 89 5 29 244 40 260 2.06e-78 239
Msa1192680 AT1G18250.1 54.464 224 91 5 29 244 19 239 3.90e-78 238
Msa1192680 AT1G77700.3 51.883 239 107 5 10 245 40 273 4.89e-78 241
Msa1192680 AT4G38670.2 51.626 246 108 5 28 262 4 249 5.89e-78 238
Msa1192680 AT1G18250.2 54.018 224 92 5 29 244 20 240 8.25e-78 238
Msa1192680 AT1G77700.2 49.801 251 118 5 10 257 40 285 1.04e-77 239
Msa1192680 AT5G24620.1 48.507 268 118 7 15 264 6 271 1.96e-76 240
Msa1192680 AT5G24620.4 48.507 268 118 7 15 264 61 326 3.35e-76 241
Msa1192680 AT5G24620.3 48.507 268 118 7 15 264 82 347 4.50e-76 241
Msa1192680 AT1G77700.1 54.091 220 93 5 29 245 87 301 9.20e-76 236
Msa1192680 AT5G38280.1 42.756 283 145 5 15 285 9 286 5.02e-74 240
Msa1192680 AT5G38280.2 42.756 283 145 5 15 285 9 286 5.85e-74 240
Msa1192680 AT4G36000.2 59.606 203 58 6 104 288 1 197 1.25e-67 210
Msa1192680 AT4G36000.1 59.606 203 58 6 104 288 1 197 1.25e-67 210
Msa1192680 AT5G40020.1 44.856 243 123 5 13 246 10 250 5.75e-65 205
Msa1192680 AT5G02140.1 41.892 296 150 8 9 289 3 291 7.92e-64 203
Msa1192680 AT5G02140.2 45.528 246 117 7 9 244 3 241 1.11e-62 199
Msa1192680 AT4G18253.1 42.500 240 124 5 15 246 7 240 1.33e-58 188
Msa1192680 AT1G70250.1 43.860 228 113 5 32 247 146 370 5.73e-55 191
Msa1192680 AT2G28790.1 41.841 239 125 7 17 243 12 248 3.38e-53 174
Msa1192680 AT2G28790.2 41.841 239 125 7 17 243 37 273 3.64e-53 175
Msa1192680 AT4G18250.1 41.667 240 131 4 17 249 40 277 2.31e-51 180
Msa1192680 AT4G11650.1 43.697 238 107 11 15 246 9 225 5.32e-50 166
Msa1192680 AT5G24620.2 43.275 171 81 4 134 289 15 184 1.88e-36 132
Msa1192680 AT2G24810.1 58.974 78 28 2 169 243 116 192 9.52e-24 96.3

Find 108 sgRNAs with CRISPR-Local

Find 298 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAATCTTGGATAGCAAATT+TGG 0.164837 8_1:+38621608 Msa1192680:CDS
TGTACTACCTATACTATAAT+TGG 0.191819 8_1:+38619685 Msa1192680:five_prime_UTR
TTTCAGTTTGAAATCTTTAA+TGG 0.204453 8_1:+38621542 Msa1192680:intron
AGTATAGGTAGTACAAAATT+TGG 0.210723 8_1:-38619677 None:intergenic
TACGCATAGCTATAAGATTT+TGG 0.212867 8_1:-38620554 None:intergenic
AGAAGAAGGAGTAGGGGATT+AGG 0.223497 8_1:-38619586 None:intergenic
GGTTGCAAATTCGACGATTC+TGG 0.256766 8_1:+38620155 Msa1192680:CDS
GAAGAAGGAGTAGGGGATTA+GGG 0.269919 8_1:-38619585 None:intergenic
CCGGTTGGTCAGGTAGATTC+TGG 0.283059 8_1:+38620123 Msa1192680:CDS
TCAACCGGAGACTGTGGTTC+CGG 0.303738 8_1:+38620191 Msa1192680:CDS
ACAATATGGCCAGGAATTCT+AGG 0.311650 8_1:+38620032 Msa1192680:CDS
TTGTTCGCCTTCGGTTTATT+CGG 0.321676 8_1:+38620511 Msa1192680:CDS
ATCCTTGTCCTATGTCATAA+AGG 0.326258 8_1:-38621780 None:intergenic
CAACCGGAGACTGTGGTTCC+GGG 0.352374 8_1:+38620192 Msa1192680:CDS
GGCCACGGAACCTGCTCAAC+CGG 0.356065 8_1:+38620176 Msa1192680:CDS
GTTGAAACTAGTGGCGGTTC+AGG 0.356585 8_1:+38620338 Msa1192680:CDS
ACAAATGTGATCACACAATA+TGG 0.373841 8_1:+38620018 Msa1192680:CDS
GTAGAGGTGGAACTCTCTTT+AGG 0.376420 8_1:-38619631 None:intergenic
ATAGACATGGAAGTTGAAAA+TGG 0.377749 8_1:-38621660 None:intergenic
AACTCTCTTTAGGAGTGAAT+TGG 0.379146 8_1:-38619621 None:intergenic
AAACCGGTTGTTCCGAGGTC+TGG 0.386392 8_1:-38620059 None:intergenic
TATTGTTGTAGTGGCGCGTT+TGG 0.396855 8_1:+38620476 Msa1192680:CDS
AATAGCGCGTGTGGTGCCTT+TGG 0.406914 8_1:+38620443 Msa1192680:CDS
GTGGATTAGAAGAAGGAGTA+GGG 0.417664 8_1:-38619593 None:intergenic
CTGCAGTAGCTACTAAATCT+TGG 0.418679 8_1:+38621595 Msa1192680:CDS
TGTAGACGGTTACAATCTTC+CGG 0.423644 8_1:+38620310 Msa1192680:CDS
GAAATTAACTGCAACGGAAA+CGG 0.426268 8_1:+38620215 Msa1192680:CDS
CAAGCACCAGCCGGTTGGTC+AGG 0.426443 8_1:+38620113 Msa1192680:CDS
GTGAATTCTGCTAATGTTGC+CGG 0.441903 8_1:-38620248 None:intergenic
TATACATACCTTTGAAAGCT+AGG 0.444402 8_1:-38619782 None:intergenic
CGGAAACGGCGCAACACCAC+CGG 0.452277 8_1:+38620229 Msa1192680:CDS
ATTCCAACCAATTATAGTAT+AGG 0.453268 8_1:-38619692 None:intergenic
TTCCCCGGAACCACAGTCTC+CGG 0.457171 8_1:-38620195 None:intergenic
ATAGCGCGTGTGGTGCCTTT+GGG 0.460528 8_1:+38620444 Msa1192680:CDS
GCCATCGAGTTGTTCGCCTT+CGG 0.461378 8_1:+38620502 Msa1192680:CDS
TCCTTGTCCTATGTCATAAA+GGG 0.463219 8_1:-38621779 None:intergenic
AGACTAACATCGTAGTAATC+TGG 0.463483 8_1:-38620287 None:intergenic
TCATGTCAGCCCACTGGATG+TGG 0.463727 8_1:+38620362 Msa1192680:CDS
AAACCAGACCTCGGAACAAC+CGG 0.464546 8_1:+38620056 Msa1192680:CDS
TAGGGGATTAGGGAGAAAAT+TGG 0.464860 8_1:-38619575 None:intergenic
TCCGTTGCAGTTAATTTCCC+CGG 0.478576 8_1:-38620210 None:intergenic
GGAAGAGGTGGATTAGAAGA+AGG 0.482430 8_1:-38619600 None:intergenic
TCTCATACCCTTTATGACAT+AGG 0.484360 8_1:+38621772 Msa1192680:three_prime_UTR
TGGATTAGAAGAAGGAGTAG+GGG 0.484872 8_1:-38619592 None:intergenic
ATTTACCTTGGAGAAGAAGA+AGG 0.485184 8_1:-38620638 None:intergenic
CTTTGAAAGCTAGGATAAGT+AGG 0.489482 8_1:-38619773 None:intergenic
CGGTTACAATCTTCCGGTGA+TGG 0.491856 8_1:+38620316 Msa1192680:CDS
CTGACCAACCGGCTGGTGCT+TGG 0.493351 8_1:-38620112 None:intergenic
CGGTTGGTCAGGTAGATTCT+GGG 0.493549 8_1:+38620124 Msa1192680:CDS
CTACTTATCCTAGCTTTCAA+AGG 0.495706 8_1:+38619774 Msa1192680:CDS
GGTGGATTAGAAGAAGGAGT+AGG 0.495979 8_1:-38619594 None:intergenic
GCTTGTTCTACTGATGATCC+TGG 0.496977 8_1:-38621573 None:intergenic
ACATGGAAGTTGAAAATGGT+TGG 0.500978 8_1:-38621656 None:intergenic
GGTAGATTCTGGGCAAGAAC+CGG 0.501018 8_1:+38620134 Msa1192680:CDS
ACCACAGTCTCCGGTTGAGC+AGG 0.501097 8_1:-38620186 None:intergenic
TAGGAGTGAATTGGAAGAGG+TGG 0.506212 8_1:-38619612 None:intergenic
CCAACCGGCTGGTGCTTGGA+AGG 0.506602 8_1:-38620108 None:intergenic
TAAGTAGGAAAATGAAGAAA+CGG 0.509403 8_1:-38619758 None:intergenic
TATTCTTGTGGAAGCTCCTG+TGG 0.511782 8_1:-38621631 None:intergenic
TTTAATTTGTACTGTAGAGG+TGG 0.511893 8_1:-38619644 None:intergenic
CTTTAGGAGTGAATTGGAAG+AGG 0.512519 8_1:-38619615 None:intergenic
GATCAAACAACATAAGTAGT+TGG 0.514391 8_1:+38621800 Msa1192680:three_prime_UTR
GATGTGGAGAGGATCTTAAC+CGG 0.515133 8_1:+38620378 Msa1192680:CDS
AGAATCGTCGAATTTGCAAC+CGG 0.526091 8_1:-38620153 None:intergenic
CCGTCCACTCTCAGCTCCGA+TGG 0.526529 8_1:-38620407 None:intergenic
CCAGAATCTACCTGACCAAC+CGG 0.527173 8_1:-38620123 None:intergenic
TCTTTAATGGAGTCAAAGCC+AGG 0.528098 8_1:+38621555 Msa1192680:CDS
TCAGGTTCATGTCAGCCCAC+TGG 0.530267 8_1:+38620356 Msa1192680:CDS
CTACCTATACTATAATTGGT+TGG 0.532469 8_1:+38619689 Msa1192680:five_prime_UTR
TGTGATCACACAATATGGCC+AGG 0.532969 8_1:+38620023 Msa1192680:CDS
TTTGTCCTTCTTCTTCTCCA+AGG 0.536796 8_1:+38620633 Msa1192680:CDS
TGGATAGCAAATTTGGCCAC+AGG 0.539560 8_1:+38621615 Msa1192680:CDS
GTGTGGTGCCTTTGGGACAC+CGG 0.551624 8_1:+38620451 Msa1192680:CDS
AAATTCGACGATTCTGGCCA+CGG 0.552629 8_1:+38620161 Msa1192680:CDS
AAATGGTTGGCTTATTCTTG+TGG 0.566106 8_1:-38621643 None:intergenic
AACATTTCCGAATAAACCGA+AGG 0.568030 8_1:-38620518 None:intergenic
TATGCAAATGAGATGTCACT+TGG 0.568469 8_1:-38621746 None:intergenic
CCATCGGAGCTGAGAGTGGA+CGG 0.581824 8_1:+38620407 Msa1192680:CDS
GTGTCCATCGGAGCTGAGAG+TGG 0.585045 8_1:+38620403 Msa1192680:CDS
CTCCGGTTGAGCAGGTTCCG+TGG 0.586582 8_1:-38620178 None:intergenic
ACACCGGAGTATTGTTGTAG+TGG 0.587807 8_1:+38620467 Msa1192680:CDS
CCACTAGTTTCAACCATCAC+CGG 0.588717 8_1:-38620329 None:intergenic
TCCGGGGAAATTAACTGCAA+CGG 0.590336 8_1:+38620209 Msa1192680:CDS
AATCTACCTGACCAACCGGC+TGG 0.593577 8_1:-38620119 None:intergenic
TACGATGTTAGTCTTGTAGA+CGG 0.595413 8_1:+38620296 Msa1192680:CDS
ACATTAGCAGAATTCACTCT+AGG 0.595724 8_1:+38620254 Msa1192680:CDS
ACCGAAGGCGAACAACTCGA+TGG 0.601385 8_1:-38620503 None:intergenic
AACCGGAGACTGTGGTTCCG+GGG 0.604183 8_1:+38620193 Msa1192680:CDS
AAGATCCTCTCCACATCCAG+TGG 0.606360 8_1:-38620372 None:intergenic
TCAGCTCCGATGGACACCTC+CGG 0.607057 8_1:-38620397 None:intergenic
ACCTGCTCAACCGGAGACTG+TGG 0.608729 8_1:+38620185 Msa1192680:CDS
ACAATACTCCGGTGTCCCAA+AGG 0.614212 8_1:-38620459 None:intergenic
TCTTAACCGGAGGTGTCCAT+CGG 0.615290 8_1:+38620391 Msa1192680:CDS
TAGTACAAAATTTGGAACAG+AGG 0.618607 8_1:-38619669 None:intergenic
CCTTCCAAGCACCAGCCGGT+TGG 0.621791 8_1:+38620108 Msa1192680:CDS
GTTCAAAACCGGTTGTTCCG+AGG 0.625163 8_1:-38620064 None:intergenic
CAAACCTTCCAAGCACCAGC+CGG 0.627518 8_1:+38620104 Msa1192680:CDS
CCGGTGATGGTTGAAACTAG+TGG 0.635688 8_1:+38620329 Msa1192680:CDS
AGATCCTCTCCACATCCAGT+GGG 0.647063 8_1:-38620371 None:intergenic
GACGCGTGTAATAGCGCGTG+TGG 0.652762 8_1:+38620434 Msa1192680:CDS
TCAGCCCACTGGATGTGGAG+AGG 0.658980 8_1:+38620367 Msa1192680:CDS
ACCCTTTATGACATAGGACA+AGG 0.663858 8_1:+38621778 Msa1192680:three_prime_UTR
ATTCTAGGAAAACCAGACCT+CGG 0.680245 8_1:+38620047 Msa1192680:CDS
AATTCTGCTAATGTTGCCGG+TGG 0.701173 8_1:-38620245 None:intergenic
GCGCCACTACAACAATACTC+CGG 0.703825 8_1:-38620470 None:intergenic
GTGGAGAGGATCTTAACCGG+AGG 0.704810 8_1:+38620381 Msa1192680:CDS
TCGGAGCTGAGAGTGGACGG+TGG 0.723814 8_1:+38620410 Msa1192680:CDS
GTGATGGTTGAAACTAGTGG+CGG 0.740161 8_1:+38620332 Msa1192680:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATTCATATATGTATTGA+TGG - chr8_1:38619912-38619931 None:intergenic 15.0%
!!! ACTTTTCACTTTTTTTTTTT+AGG + chr8_1:38620693-38620712 Msa1192680:intron 15.0%
!!! CTTTTCACTTTTTTTTTTTA+GGG + chr8_1:38620694-38620713 Msa1192680:intron 15.0%
!!! TTTTAAGAGTAAAAAATGAA+AGG + chr8_1:38621158-38621177 Msa1192680:intron 15.0%
!!! TGAATTTTACAAAAGAAAAT+TGG + chr8_1:38621263-38621282 Msa1192680:intron 15.0%
!! TTAATTCATATATGTATTGA+TGG - chr8_1:38619912-38619931 None:intergenic 15.0%
!!! ACTTTTCACTTTTTTTTTTT+AGG + chr8_1:38620693-38620712 Msa1192680:intron 15.0%
!!! CTTTTCACTTTTTTTTTTTA+GGG + chr8_1:38620694-38620713 Msa1192680:intron 15.0%
!!! TTTTAAGAGTAAAAAATGAA+AGG + chr8_1:38621158-38621177 Msa1192680:intron 15.0%
!!! TGAATTTTACAAAAGAAAAT+TGG + chr8_1:38621263-38621282 Msa1192680:intron 15.0%
!!! GAATCACTTAAAAGTTTTAA+TGG + chr8_1:38621069-38621088 Msa1192680:intron 20.0%
!!! CTTTTGTAAAATTCAGAATT+TGG - chr8_1:38621258-38621277 None:intergenic 20.0%
!! ACTATCAATTAAGATACAAT+AGG - chr8_1:38621454-38621473 None:intergenic 20.0%
!!! TTTCAGTTTGAAATCTTTAA+TGG + chr8_1:38621542-38621561 Msa1192680:intron 20.0%
!!! GAATCACTTAAAAGTTTTAA+TGG + chr8_1:38621069-38621088 Msa1192680:intron 20.0%
!!! CTTTTGTAAAATTCAGAATT+TGG - chr8_1:38621258-38621277 None:intergenic 20.0%
!! ACTATCAATTAAGATACAAT+AGG - chr8_1:38621454-38621473 None:intergenic 20.0%
!!! TTTCAGTTTGAAATCTTTAA+TGG + chr8_1:38621542-38621561 Msa1192680:intron 20.0%
!!! GATTTTAATTTGTACTGTAG+AGG - chr8_1:38619650-38619669 None:intergenic 25.0%
! AGTATAGGTAGTACAAAATT+TGG - chr8_1:38619680-38619699 None:intergenic 25.0%
! TGTACTACCTATACTATAAT+TGG + chr8_1:38619685-38619704 Msa1192680:five_prime_UTR 25.0%
! ATTCCAACCAATTATAGTAT+AGG - chr8_1:38619695-38619714 None:intergenic 25.0%
! TAAGTAGGAAAATGAAGAAA+CGG - chr8_1:38619761-38619780 None:intergenic 25.0%
!! ATATAACGACGATTTTTGAT+TGG - chr8_1:38619874-38619893 None:intergenic 25.0%
!!! GTGAAAAGTTTTATTTACCT+TGG - chr8_1:38620653-38620672 None:intergenic 25.0%
!! AACTTTTCACTCTTTAATCA+AGG + chr8_1:38620725-38620744 Msa1192680:intron 25.0%
!!! CCTATTTTTTGTTTTGTCAA+AGG - chr8_1:38621018-38621037 None:intergenic 25.0%
! CCTTTGACAAAACAAAAAAT+AGG + chr8_1:38621015-38621034 Msa1192680:intron 25.0%
!!! TATTGATGATGAAATTGTTC+TGG + chr8_1:38621047-38621066 Msa1192680:intron 25.0%
! ATCAATTAAGATACAATAGG+TGG - chr8_1:38621451-38621470 None:intergenic 25.0%
!! GTGATGTGAAAATCTTTTAA+TGG + chr8_1:38621474-38621493 Msa1192680:intron 25.0%
! TAAATCTTGGATAGCAAATT+TGG + chr8_1:38621608-38621627 Msa1192680:CDS 25.0%
! AGCAACAAAAAATATAGACA+TGG - chr8_1:38621676-38621695 None:intergenic 25.0%
!!! GATTTTAATTTGTACTGTAG+AGG - chr8_1:38619650-38619669 None:intergenic 25.0%
! AGTATAGGTAGTACAAAATT+TGG - chr8_1:38619680-38619699 None:intergenic 25.0%
! TGTACTACCTATACTATAAT+TGG + chr8_1:38619685-38619704 Msa1192680:five_prime_UTR 25.0%
! ATTCCAACCAATTATAGTAT+AGG - chr8_1:38619695-38619714 None:intergenic 25.0%
! TAAGTAGGAAAATGAAGAAA+CGG - chr8_1:38619761-38619780 None:intergenic 25.0%
!! ATATAACGACGATTTTTGAT+TGG - chr8_1:38619874-38619893 None:intergenic 25.0%
!!! GTGAAAAGTTTTATTTACCT+TGG - chr8_1:38620653-38620672 None:intergenic 25.0%
!! AACTTTTCACTCTTTAATCA+AGG + chr8_1:38620725-38620744 Msa1192680:intron 25.0%
!!! CCTATTTTTTGTTTTGTCAA+AGG - chr8_1:38621018-38621037 None:intergenic 25.0%
! CCTTTGACAAAACAAAAAAT+AGG + chr8_1:38621015-38621034 Msa1192680:intron 25.0%
!!! TATTGATGATGAAATTGTTC+TGG + chr8_1:38621047-38621066 Msa1192680:intron 25.0%
! ATCAATTAAGATACAATAGG+TGG - chr8_1:38621451-38621470 None:intergenic 25.0%
!! GTGATGTGAAAATCTTTTAA+TGG + chr8_1:38621474-38621493 Msa1192680:intron 25.0%
! TAAATCTTGGATAGCAAATT+TGG + chr8_1:38621608-38621627 Msa1192680:CDS 25.0%
! AGCAACAAAAAATATAGACA+TGG - chr8_1:38621676-38621695 None:intergenic 25.0%
!! TTTAATTTGTACTGTAGAGG+TGG - chr8_1:38619647-38619666 None:intergenic 30.0%
! TAGTACAAAATTTGGAACAG+AGG - chr8_1:38619672-38619691 None:intergenic 30.0%
CTACCTATACTATAATTGGT+TGG + chr8_1:38619689-38619708 Msa1192680:five_prime_UTR 30.0%
! TATACATACCTTTGAAAGCT+AGG - chr8_1:38619785-38619804 None:intergenic 30.0%
ACAAATGTGATCACACAATA+TGG + chr8_1:38620018-38620037 Msa1192680:CDS 30.0%
!!! TCCTTTTTTGAGTTCAAAAC+CGG - chr8_1:38620078-38620097 None:intergenic 30.0%
! TACGCATAGCTATAAGATTT+TGG - chr8_1:38620557-38620576 None:intergenic 30.0%
TTAACCAACAACCTTTGATA+GGG - chr8_1:38620768-38620787 None:intergenic 30.0%
TTTAACCAACAACCTTTGAT+AGG - chr8_1:38620769-38620788 None:intergenic 30.0%
GTTGGTTAAACAAGTTGTTA+AGG + chr8_1:38620779-38620798 Msa1192680:intron 30.0%
! AAGTTGTTAAGGACATCTTT+TGG + chr8_1:38620790-38620809 Msa1192680:intron 30.0%
CTTACAACTATCAAAATCCA+AGG + chr8_1:38620917-38620936 Msa1192680:intron 30.0%
GAATGTTGTGATGAAAGATT+AGG + chr8_1:38621108-38621127 Msa1192680:intron 30.0%
AGAAATTGAGTGTATGTCAT+TGG + chr8_1:38621221-38621240 Msa1192680:intron 30.0%
ATAGACATGGAAGTTGAAAA+TGG - chr8_1:38621663-38621682 None:intergenic 30.0%
GATCAAACAACATAAGTAGT+TGG + chr8_1:38621800-38621819 Msa1192680:three_prime_UTR 30.0%
!! TTTAATTTGTACTGTAGAGG+TGG - chr8_1:38619647-38619666 None:intergenic 30.0%
! TAGTACAAAATTTGGAACAG+AGG - chr8_1:38619672-38619691 None:intergenic 30.0%
CTACCTATACTATAATTGGT+TGG + chr8_1:38619689-38619708 Msa1192680:five_prime_UTR 30.0%
! TATACATACCTTTGAAAGCT+AGG - chr8_1:38619785-38619804 None:intergenic 30.0%
ACAAATGTGATCACACAATA+TGG + chr8_1:38620018-38620037 Msa1192680:CDS 30.0%
!!! TCCTTTTTTGAGTTCAAAAC+CGG - chr8_1:38620078-38620097 None:intergenic 30.0%
! TACGCATAGCTATAAGATTT+TGG - chr8_1:38620557-38620576 None:intergenic 30.0%
TTAACCAACAACCTTTGATA+GGG - chr8_1:38620768-38620787 None:intergenic 30.0%
TTTAACCAACAACCTTTGAT+AGG - chr8_1:38620769-38620788 None:intergenic 30.0%
GTTGGTTAAACAAGTTGTTA+AGG + chr8_1:38620779-38620798 Msa1192680:intron 30.0%
! AAGTTGTTAAGGACATCTTT+TGG + chr8_1:38620790-38620809 Msa1192680:intron 30.0%
CTTACAACTATCAAAATCCA+AGG + chr8_1:38620917-38620936 Msa1192680:intron 30.0%
GAATGTTGTGATGAAAGATT+AGG + chr8_1:38621108-38621127 Msa1192680:intron 30.0%
AGAAATTGAGTGTATGTCAT+TGG + chr8_1:38621221-38621240 Msa1192680:intron 30.0%
ATAGACATGGAAGTTGAAAA+TGG - chr8_1:38621663-38621682 None:intergenic 30.0%
GATCAAACAACATAAGTAGT+TGG + chr8_1:38621800-38621819 Msa1192680:three_prime_UTR 30.0%
! AACTCTCTTTAGGAGTGAAT+TGG - chr8_1:38619624-38619643 None:intergenic 35.0%
! CTTTGAAAGCTAGGATAAGT+AGG - chr8_1:38619776-38619795 None:intergenic 35.0%
! CTACTTATCCTAGCTTTCAA+AGG + chr8_1:38619774-38619793 Msa1192680:CDS 35.0%
ACAATTATTCCCATACATGC+AGG + chr8_1:38619960-38619979 Msa1192680:intron 35.0%
ATTGTTACTCCTGCATGTAT+GGG - chr8_1:38619972-38619991 None:intergenic 35.0%
AATTGTTACTCCTGCATGTA+TGG - chr8_1:38619973-38619992 None:intergenic 35.0%
!!! ACCGGTTTTGAACTCAAAAA+AGG + chr8_1:38620074-38620093 Msa1192680:CDS 35.0%
GAAATTAACTGCAACGGAAA+CGG + chr8_1:38620215-38620234 Msa1192680:CDS 35.0%
ACATTAGCAGAATTCACTCT+AGG + chr8_1:38620254-38620273 Msa1192680:CDS 35.0%
AGACTAACATCGTAGTAATC+TGG - chr8_1:38620290-38620309 None:intergenic 35.0%
!! TACGATGTTAGTCTTGTAGA+CGG + chr8_1:38620296-38620315 Msa1192680:CDS 35.0%
AACATTTCCGAATAAACCGA+AGG - chr8_1:38620521-38620540 None:intergenic 35.0%
! GCTATAAGATTTTGGACAAG+CGG - chr8_1:38620549-38620568 None:intergenic 35.0%
! TACTTTTACTTGTACTGCTG+CGG + chr8_1:38620592-38620611 Msa1192680:CDS 35.0%
ATTTACCTTGGAGAAGAAGA+AGG - chr8_1:38620641-38620660 None:intergenic 35.0%
TAACCAACAACCTTTGATAG+GGG - chr8_1:38620767-38620786 None:intergenic 35.0%
! TTGTAAGATCGATTTAGTGC+AGG - chr8_1:38620904-38620923 None:intergenic 35.0%
ACAACTATCAAAATCCAAGG+TGG + chr8_1:38620920-38620939 Msa1192680:intron 35.0%
!! GATGCAATCTTGATTTGTTG+TGG + chr8_1:38620945-38620964 Msa1192680:intron 35.0%
ACAATAGGTGGAAAGAAGAA+AGG - chr8_1:38621439-38621458 None:intergenic 35.0%
CAACATCTTCAATTATGTCG+TGG - chr8_1:38621501-38621520 None:intergenic 35.0%
!! AAATGGTTGGCTTATTCTTG+TGG - chr8_1:38621646-38621665 None:intergenic 35.0%
ACATGGAAGTTGAAAATGGT+TGG - chr8_1:38621659-38621678 None:intergenic 35.0%
TATGCAAATGAGATGTCACT+TGG - chr8_1:38621749-38621768 None:intergenic 35.0%
TCTCATACCCTTTATGACAT+AGG + chr8_1:38621772-38621791 Msa1192680:three_prime_UTR 35.0%
TCCTTGTCCTATGTCATAAA+GGG - chr8_1:38621782-38621801 None:intergenic 35.0%
ATCCTTGTCCTATGTCATAA+AGG - chr8_1:38621783-38621802 None:intergenic 35.0%
! AACTCTCTTTAGGAGTGAAT+TGG - chr8_1:38619624-38619643 None:intergenic 35.0%
! CTTTGAAAGCTAGGATAAGT+AGG - chr8_1:38619776-38619795 None:intergenic 35.0%
! CTACTTATCCTAGCTTTCAA+AGG + chr8_1:38619774-38619793 Msa1192680:CDS 35.0%
ACAATTATTCCCATACATGC+AGG + chr8_1:38619960-38619979 Msa1192680:intron 35.0%
ATTGTTACTCCTGCATGTAT+GGG - chr8_1:38619972-38619991 None:intergenic 35.0%
AATTGTTACTCCTGCATGTA+TGG - chr8_1:38619973-38619992 None:intergenic 35.0%
!!! ACCGGTTTTGAACTCAAAAA+AGG + chr8_1:38620074-38620093 Msa1192680:CDS 35.0%
GAAATTAACTGCAACGGAAA+CGG + chr8_1:38620215-38620234 Msa1192680:CDS 35.0%
ACATTAGCAGAATTCACTCT+AGG + chr8_1:38620254-38620273 Msa1192680:CDS 35.0%
AGACTAACATCGTAGTAATC+TGG - chr8_1:38620290-38620309 None:intergenic 35.0%
!! TACGATGTTAGTCTTGTAGA+CGG + chr8_1:38620296-38620315 Msa1192680:CDS 35.0%
AACATTTCCGAATAAACCGA+AGG - chr8_1:38620521-38620540 None:intergenic 35.0%
! GCTATAAGATTTTGGACAAG+CGG - chr8_1:38620549-38620568 None:intergenic 35.0%
! TACTTTTACTTGTACTGCTG+CGG + chr8_1:38620592-38620611 Msa1192680:CDS 35.0%
ATTTACCTTGGAGAAGAAGA+AGG - chr8_1:38620641-38620660 None:intergenic 35.0%
TAACCAACAACCTTTGATAG+GGG - chr8_1:38620767-38620786 None:intergenic 35.0%
! TTGTAAGATCGATTTAGTGC+AGG - chr8_1:38620904-38620923 None:intergenic 35.0%
ACAACTATCAAAATCCAAGG+TGG + chr8_1:38620920-38620939 Msa1192680:intron 35.0%
!! GATGCAATCTTGATTTGTTG+TGG + chr8_1:38620945-38620964 Msa1192680:intron 35.0%
ACAATAGGTGGAAAGAAGAA+AGG - chr8_1:38621439-38621458 None:intergenic 35.0%
CAACATCTTCAATTATGTCG+TGG - chr8_1:38621501-38621520 None:intergenic 35.0%
!! AAATGGTTGGCTTATTCTTG+TGG - chr8_1:38621646-38621665 None:intergenic 35.0%
ACATGGAAGTTGAAAATGGT+TGG - chr8_1:38621659-38621678 None:intergenic 35.0%
TATGCAAATGAGATGTCACT+TGG - chr8_1:38621749-38621768 None:intergenic 35.0%
TCTCATACCCTTTATGACAT+AGG + chr8_1:38621772-38621791 Msa1192680:three_prime_UTR 35.0%
TCCTTGTCCTATGTCATAAA+GGG - chr8_1:38621782-38621801 None:intergenic 35.0%
ATCCTTGTCCTATGTCATAA+AGG - chr8_1:38621783-38621802 None:intergenic 35.0%
! TGGATTAGAAGAAGGAGTAG+GGG - chr8_1:38619595-38619614 None:intergenic 40.0%
!! GTGGATTAGAAGAAGGAGTA+GGG - chr8_1:38619596-38619615 None:intergenic 40.0%
! CTTTAGGAGTGAATTGGAAG+AGG - chr8_1:38619618-38619637 None:intergenic 40.0%
ACAATATGGCCAGGAATTCT+AGG + chr8_1:38620032-38620051 Msa1192680:CDS 40.0%
!!! TCTGGTTTTCCTAGAATTCC+TGG - chr8_1:38620044-38620063 None:intergenic 40.0%
! ATTCTAGGAAAACCAGACCT+CGG + chr8_1:38620047-38620066 Msa1192680:CDS 40.0%
AGAATCGTCGAATTTGCAAC+CGG - chr8_1:38620156-38620175 None:intergenic 40.0%
GTGAATTCTGCTAATGTTGC+CGG - chr8_1:38620251-38620270 None:intergenic 40.0%
TGTAGACGGTTACAATCTTC+CGG + chr8_1:38620310-38620329 Msa1192680:CDS 40.0%
TTGTTCGCCTTCGGTTTATT+CGG + chr8_1:38620511-38620530 Msa1192680:CDS 40.0%
TTTGTCCTTCTTCTTCTCCA+AGG + chr8_1:38620633-38620652 Msa1192680:CDS 40.0%
CTCAATTTCACCCCTATCAA+AGG + chr8_1:38620754-38620773 Msa1192680:intron 40.0%
TCTTTAATGGAGTCAAAGCC+AGG + chr8_1:38621555-38621574 Msa1192680:CDS 40.0%
CTGCAGTAGCTACTAAATCT+TGG + chr8_1:38621595-38621614 Msa1192680:CDS 40.0%
ACCCTTTATGACATAGGACA+AGG + chr8_1:38621778-38621797 Msa1192680:three_prime_UTR 40.0%
! TGGATTAGAAGAAGGAGTAG+GGG - chr8_1:38619595-38619614 None:intergenic 40.0%
!! GTGGATTAGAAGAAGGAGTA+GGG - chr8_1:38619596-38619615 None:intergenic 40.0%
! CTTTAGGAGTGAATTGGAAG+AGG - chr8_1:38619618-38619637 None:intergenic 40.0%
ACAATATGGCCAGGAATTCT+AGG + chr8_1:38620032-38620051 Msa1192680:CDS 40.0%
!!! TCTGGTTTTCCTAGAATTCC+TGG - chr8_1:38620044-38620063 None:intergenic 40.0%
! ATTCTAGGAAAACCAGACCT+CGG + chr8_1:38620047-38620066 Msa1192680:CDS 40.0%
AGAATCGTCGAATTTGCAAC+CGG - chr8_1:38620156-38620175 None:intergenic 40.0%
GTGAATTCTGCTAATGTTGC+CGG - chr8_1:38620251-38620270 None:intergenic 40.0%
TGTAGACGGTTACAATCTTC+CGG + chr8_1:38620310-38620329 Msa1192680:CDS 40.0%
TTGTTCGCCTTCGGTTTATT+CGG + chr8_1:38620511-38620530 Msa1192680:CDS 40.0%
TTTGTCCTTCTTCTTCTCCA+AGG + chr8_1:38620633-38620652 Msa1192680:CDS 40.0%
CTCAATTTCACCCCTATCAA+AGG + chr8_1:38620754-38620773 Msa1192680:intron 40.0%
TCTTTAATGGAGTCAAAGCC+AGG + chr8_1:38621555-38621574 Msa1192680:CDS 40.0%
CTGCAGTAGCTACTAAATCT+TGG + chr8_1:38621595-38621614 Msa1192680:CDS 40.0%
ACCCTTTATGACATAGGACA+AGG + chr8_1:38621778-38621797 Msa1192680:three_prime_UTR 40.0%
GAAGAAGGAGTAGGGGATTA+GGG - chr8_1:38619588-38619607 None:intergenic 45.0%
AGAAGAAGGAGTAGGGGATT+AGG - chr8_1:38619589-38619608 None:intergenic 45.0%
!! GGTGGATTAGAAGAAGGAGT+AGG - chr8_1:38619597-38619616 None:intergenic 45.0%
!! GGAAGAGGTGGATTAGAAGA+AGG - chr8_1:38619603-38619622 None:intergenic 45.0%
TAGGAGTGAATTGGAAGAGG+TGG - chr8_1:38619615-38619634 None:intergenic 45.0%
GTAGAGGTGGAACTCTCTTT+AGG - chr8_1:38619634-38619653 None:intergenic 45.0%
TGTGATCACACAATATGGCC+AGG + chr8_1:38620023-38620042 Msa1192680:CDS 45.0%
GGTTGCAAATTCGACGATTC+TGG + chr8_1:38620155-38620174 Msa1192680:CDS 45.0%
AAATTCGACGATTCTGGCCA+CGG + chr8_1:38620161-38620180 Msa1192680:CDS 45.0%
TCCGGGGAAATTAACTGCAA+CGG + chr8_1:38620209-38620228 Msa1192680:CDS 45.0%
TCCGTTGCAGTTAATTTCCC+CGG - chr8_1:38620213-38620232 None:intergenic 45.0%
AATTCTGCTAATGTTGCCGG+TGG - chr8_1:38620248-38620267 None:intergenic 45.0%
! CCACTAGTTTCAACCATCAC+CGG - chr8_1:38620332-38620351 None:intergenic 45.0%
GTGATGGTTGAAACTAGTGG+CGG + chr8_1:38620332-38620351 Msa1192680:CDS 45.0%
GATGTGGAGAGGATCTTAAC+CGG + chr8_1:38620378-38620397 Msa1192680:CDS 45.0%
!! ACACCGGAGTATTGTTGTAG+TGG + chr8_1:38620467-38620486 Msa1192680:CDS 45.0%
TATTGTTGTAGTGGCGCGTT+TGG + chr8_1:38620476-38620495 Msa1192680:CDS 45.0%
TCACCCCTATCAAAGGTTGT+TGG + chr8_1:38620761-38620780 Msa1192680:intron 45.0%
GCTTGTTCTACTGATGATCC+TGG - chr8_1:38621576-38621595 None:intergenic 45.0%
TGGATAGCAAATTTGGCCAC+AGG + chr8_1:38621615-38621634 Msa1192680:CDS 45.0%
TATTCTTGTGGAAGCTCCTG+TGG - chr8_1:38621634-38621653 None:intergenic 45.0%
GAAGAAGGAGTAGGGGATTA+GGG - chr8_1:38619588-38619607 None:intergenic 45.0%
AGAAGAAGGAGTAGGGGATT+AGG - chr8_1:38619589-38619608 None:intergenic 45.0%
!! GGTGGATTAGAAGAAGGAGT+AGG - chr8_1:38619597-38619616 None:intergenic 45.0%
!! GGAAGAGGTGGATTAGAAGA+AGG - chr8_1:38619603-38619622 None:intergenic 45.0%
TAGGAGTGAATTGGAAGAGG+TGG - chr8_1:38619615-38619634 None:intergenic 45.0%
GTAGAGGTGGAACTCTCTTT+AGG - chr8_1:38619634-38619653 None:intergenic 45.0%
TGTGATCACACAATATGGCC+AGG + chr8_1:38620023-38620042 Msa1192680:CDS 45.0%
GGTTGCAAATTCGACGATTC+TGG + chr8_1:38620155-38620174 Msa1192680:CDS 45.0%
AAATTCGACGATTCTGGCCA+CGG + chr8_1:38620161-38620180 Msa1192680:CDS 45.0%
TCCGGGGAAATTAACTGCAA+CGG + chr8_1:38620209-38620228 Msa1192680:CDS 45.0%
TCCGTTGCAGTTAATTTCCC+CGG - chr8_1:38620213-38620232 None:intergenic 45.0%
AATTCTGCTAATGTTGCCGG+TGG - chr8_1:38620248-38620267 None:intergenic 45.0%
! CCACTAGTTTCAACCATCAC+CGG - chr8_1:38620332-38620351 None:intergenic 45.0%
GTGATGGTTGAAACTAGTGG+CGG + chr8_1:38620332-38620351 Msa1192680:CDS 45.0%
GATGTGGAGAGGATCTTAAC+CGG + chr8_1:38620378-38620397 Msa1192680:CDS 45.0%
!! ACACCGGAGTATTGTTGTAG+TGG + chr8_1:38620467-38620486 Msa1192680:CDS 45.0%
TATTGTTGTAGTGGCGCGTT+TGG + chr8_1:38620476-38620495 Msa1192680:CDS 45.0%
TCACCCCTATCAAAGGTTGT+TGG + chr8_1:38620761-38620780 Msa1192680:intron 45.0%
GCTTGTTCTACTGATGATCC+TGG - chr8_1:38621576-38621595 None:intergenic 45.0%
TGGATAGCAAATTTGGCCAC+AGG + chr8_1:38621615-38621634 Msa1192680:CDS 45.0%
TATTCTTGTGGAAGCTCCTG+TGG - chr8_1:38621634-38621653 None:intergenic 45.0%
AAACCAGACCTCGGAACAAC+CGG + chr8_1:38620056-38620075 Msa1192680:CDS 50.0%
GTTCAAAACCGGTTGTTCCG+AGG - chr8_1:38620067-38620086 None:intergenic 50.0%
CCAGAATCTACCTGACCAAC+CGG - chr8_1:38620126-38620145 None:intergenic 50.0%
! CGGTTGGTCAGGTAGATTCT+GGG + chr8_1:38620124-38620143 Msa1192680:CDS 50.0%
GGTAGATTCTGGGCAAGAAC+CGG + chr8_1:38620134-38620153 Msa1192680:CDS 50.0%
CGGTTACAATCTTCCGGTGA+TGG + chr8_1:38620316-38620335 Msa1192680:CDS 50.0%
! CCGGTGATGGTTGAAACTAG+TGG + chr8_1:38620329-38620348 Msa1192680:CDS 50.0%
GTTGAAACTAGTGGCGGTTC+AGG + chr8_1:38620338-38620357 Msa1192680:CDS 50.0%
AGATCCTCTCCACATCCAGT+GGG - chr8_1:38620374-38620393 None:intergenic 50.0%
AAGATCCTCTCCACATCCAG+TGG - chr8_1:38620375-38620394 None:intergenic 50.0%
!! TCTTAACCGGAGGTGTCCAT+CGG + chr8_1:38620391-38620410 Msa1192680:CDS 50.0%
ACAATACTCCGGTGTCCCAA+AGG - chr8_1:38620462-38620481 None:intergenic 50.0%
GCGCCACTACAACAATACTC+CGG - chr8_1:38620473-38620492 None:intergenic 50.0%
! CAAGATTGCATCGACCACCT+TGG - chr8_1:38620937-38620956 None:intergenic 50.0%
AAACCAGACCTCGGAACAAC+CGG + chr8_1:38620056-38620075 Msa1192680:CDS 50.0%
GTTCAAAACCGGTTGTTCCG+AGG - chr8_1:38620067-38620086 None:intergenic 50.0%
CCAGAATCTACCTGACCAAC+CGG - chr8_1:38620126-38620145 None:intergenic 50.0%
! CGGTTGGTCAGGTAGATTCT+GGG + chr8_1:38620124-38620143 Msa1192680:CDS 50.0%
GGTAGATTCTGGGCAAGAAC+CGG + chr8_1:38620134-38620153 Msa1192680:CDS 50.0%
CGGTTACAATCTTCCGGTGA+TGG + chr8_1:38620316-38620335 Msa1192680:CDS 50.0%
! CCGGTGATGGTTGAAACTAG+TGG + chr8_1:38620329-38620348 Msa1192680:CDS 50.0%
GTTGAAACTAGTGGCGGTTC+AGG + chr8_1:38620338-38620357 Msa1192680:CDS 50.0%
AGATCCTCTCCACATCCAGT+GGG - chr8_1:38620374-38620393 None:intergenic 50.0%
AAGATCCTCTCCACATCCAG+TGG - chr8_1:38620375-38620394 None:intergenic 50.0%
!! TCTTAACCGGAGGTGTCCAT+CGG + chr8_1:38620391-38620410 Msa1192680:CDS 50.0%
ACAATACTCCGGTGTCCCAA+AGG - chr8_1:38620462-38620481 None:intergenic 50.0%
GCGCCACTACAACAATACTC+CGG - chr8_1:38620473-38620492 None:intergenic 50.0%
! CAAGATTGCATCGACCACCT+TGG - chr8_1:38620937-38620956 None:intergenic 50.0%
AAACCGGTTGTTCCGAGGTC+TGG - chr8_1:38620062-38620081 None:intergenic 55.0%
CAAACCTTCCAAGCACCAGC+CGG + chr8_1:38620104-38620123 Msa1192680:CDS 55.0%
AATCTACCTGACCAACCGGC+TGG - chr8_1:38620122-38620141 None:intergenic 55.0%
! CCGGTTGGTCAGGTAGATTC+TGG + chr8_1:38620123-38620142 Msa1192680:CDS 55.0%
TCAACCGGAGACTGTGGTTC+CGG + chr8_1:38620191-38620210 Msa1192680:CDS 55.0%
TCAGGTTCATGTCAGCCCAC+TGG + chr8_1:38620356-38620375 Msa1192680:CDS 55.0%
TCATGTCAGCCCACTGGATG+TGG + chr8_1:38620362-38620381 Msa1192680:CDS 55.0%
GTGGAGAGGATCTTAACCGG+AGG + chr8_1:38620381-38620400 Msa1192680:CDS 55.0%
AATAGCGCGTGTGGTGCCTT+TGG + chr8_1:38620443-38620462 Msa1192680:CDS 55.0%
ATAGCGCGTGTGGTGCCTTT+GGG + chr8_1:38620444-38620463 Msa1192680:CDS 55.0%
! GCCATCGAGTTGTTCGCCTT+CGG + chr8_1:38620502-38620521 Msa1192680:CDS 55.0%
ACCGAAGGCGAACAACTCGA+TGG - chr8_1:38620506-38620525 None:intergenic 55.0%
AAACCGGTTGTTCCGAGGTC+TGG - chr8_1:38620062-38620081 None:intergenic 55.0%
CAAACCTTCCAAGCACCAGC+CGG + chr8_1:38620104-38620123 Msa1192680:CDS 55.0%
AATCTACCTGACCAACCGGC+TGG - chr8_1:38620122-38620141 None:intergenic 55.0%
! CCGGTTGGTCAGGTAGATTC+TGG + chr8_1:38620123-38620142 Msa1192680:CDS 55.0%
TCAACCGGAGACTGTGGTTC+CGG + chr8_1:38620191-38620210 Msa1192680:CDS 55.0%
TCAGGTTCATGTCAGCCCAC+TGG + chr8_1:38620356-38620375 Msa1192680:CDS 55.0%
TCATGTCAGCCCACTGGATG+TGG + chr8_1:38620362-38620381 Msa1192680:CDS 55.0%
GTGGAGAGGATCTTAACCGG+AGG + chr8_1:38620381-38620400 Msa1192680:CDS 55.0%
AATAGCGCGTGTGGTGCCTT+TGG + chr8_1:38620443-38620462 Msa1192680:CDS 55.0%
ATAGCGCGTGTGGTGCCTTT+GGG + chr8_1:38620444-38620463 Msa1192680:CDS 55.0%
! GCCATCGAGTTGTTCGCCTT+CGG + chr8_1:38620502-38620521 Msa1192680:CDS 55.0%
ACCGAAGGCGAACAACTCGA+TGG - chr8_1:38620506-38620525 None:intergenic 55.0%
ACCTGCTCAACCGGAGACTG+TGG + chr8_1:38620185-38620204 Msa1192680:CDS 60.0%
ACCACAGTCTCCGGTTGAGC+AGG - chr8_1:38620189-38620208 None:intergenic 60.0%
CAACCGGAGACTGTGGTTCC+GGG + chr8_1:38620192-38620211 Msa1192680:CDS 60.0%
AACCGGAGACTGTGGTTCCG+GGG + chr8_1:38620193-38620212 Msa1192680:CDS 60.0%
TTCCCCGGAACCACAGTCTC+CGG - chr8_1:38620198-38620217 None:intergenic 60.0%
TCAGCCCACTGGATGTGGAG+AGG + chr8_1:38620367-38620386 Msa1192680:CDS 60.0%
TCAGCTCCGATGGACACCTC+CGG - chr8_1:38620400-38620419 None:intergenic 60.0%
GTGTCCATCGGAGCTGAGAG+TGG + chr8_1:38620403-38620422 Msa1192680:CDS 60.0%
CCATCGGAGCTGAGAGTGGA+CGG + chr8_1:38620407-38620426 Msa1192680:CDS 60.0%
GACGCGTGTAATAGCGCGTG+TGG + chr8_1:38620434-38620453 Msa1192680:CDS 60.0%
!! GTGTGGTGCCTTTGGGACAC+CGG + chr8_1:38620451-38620470 Msa1192680:CDS 60.0%
ACCTGCTCAACCGGAGACTG+TGG + chr8_1:38620185-38620204 Msa1192680:CDS 60.0%
ACCACAGTCTCCGGTTGAGC+AGG - chr8_1:38620189-38620208 None:intergenic 60.0%
CAACCGGAGACTGTGGTTCC+GGG + chr8_1:38620192-38620211 Msa1192680:CDS 60.0%
AACCGGAGACTGTGGTTCCG+GGG + chr8_1:38620193-38620212 Msa1192680:CDS 60.0%
TTCCCCGGAACCACAGTCTC+CGG - chr8_1:38620198-38620217 None:intergenic 60.0%
TCAGCCCACTGGATGTGGAG+AGG + chr8_1:38620367-38620386 Msa1192680:CDS 60.0%
TCAGCTCCGATGGACACCTC+CGG - chr8_1:38620400-38620419 None:intergenic 60.0%
GTGTCCATCGGAGCTGAGAG+TGG + chr8_1:38620403-38620422 Msa1192680:CDS 60.0%
CCATCGGAGCTGAGAGTGGA+CGG + chr8_1:38620407-38620426 Msa1192680:CDS 60.0%
GACGCGTGTAATAGCGCGTG+TGG + chr8_1:38620434-38620453 Msa1192680:CDS 60.0%
!! GTGTGGTGCCTTTGGGACAC+CGG + chr8_1:38620451-38620470 Msa1192680:CDS 60.0%
CCAACCGGCTGGTGCTTGGA+AGG - chr8_1:38620111-38620130 None:intergenic 65.0%
CCTTCCAAGCACCAGCCGGT+TGG + chr8_1:38620108-38620127 Msa1192680:CDS 65.0%
CTGACCAACCGGCTGGTGCT+TGG - chr8_1:38620115-38620134 None:intergenic 65.0%
! CAAGCACCAGCCGGTTGGTC+AGG + chr8_1:38620113-38620132 Msa1192680:CDS 65.0%
GGCCACGGAACCTGCTCAAC+CGG + chr8_1:38620176-38620195 Msa1192680:CDS 65.0%
CTCCGGTTGAGCAGGTTCCG+TGG - chr8_1:38620181-38620200 None:intergenic 65.0%
CGGAAACGGCGCAACACCAC+CGG + chr8_1:38620229-38620248 Msa1192680:CDS 65.0%
CCGTCCACTCTCAGCTCCGA+TGG - chr8_1:38620410-38620429 None:intergenic 65.0%
TCGGAGCTGAGAGTGGACGG+TGG + chr8_1:38620410-38620429 Msa1192680:CDS 65.0%
CCAACCGGCTGGTGCTTGGA+AGG - chr8_1:38620111-38620130 None:intergenic 65.0%
CCTTCCAAGCACCAGCCGGT+TGG + chr8_1:38620108-38620127 Msa1192680:CDS 65.0%
CTGACCAACCGGCTGGTGCT+TGG - chr8_1:38620115-38620134 None:intergenic 65.0%
! CAAGCACCAGCCGGTTGGTC+AGG + chr8_1:38620113-38620132 Msa1192680:CDS 65.0%
GGCCACGGAACCTGCTCAAC+CGG + chr8_1:38620176-38620195 Msa1192680:CDS 65.0%
CTCCGGTTGAGCAGGTTCCG+TGG - chr8_1:38620181-38620200 None:intergenic 65.0%
CGGAAACGGCGCAACACCAC+CGG + chr8_1:38620229-38620248 Msa1192680:CDS 65.0%
CCGTCCACTCTCAGCTCCGA+TGG - chr8_1:38620410-38620429 None:intergenic 65.0%
TCGGAGCTGAGAGTGGACGG+TGG + chr8_1:38620410-38620429 Msa1192680:CDS 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 38619576 38621905 38619576 ID=Msa1192680;Name=Msa1192680
chr8_1 mRNA 38619576 38621905 38619576 ID=Msa1192680-mRNA-1;Parent=Msa1192680;Name=Msa1192680-mRNA-1;_AED=0.04;_eAED=0.04;_QI=147|1|1|1|1|1|3|177|308
chr8_1 exon 38619576 38619795 38619576 ID=Msa1192680-mRNA-1:exon:12622;Parent=Msa1192680-mRNA-1
chr8_1 exon 38619982 38620654 38619982 ID=Msa1192680-mRNA-1:exon:12623;Parent=Msa1192680-mRNA-1
chr8_1 exon 38621548 38621905 38621548 ID=Msa1192680-mRNA-1:exon:12624;Parent=Msa1192680-mRNA-1
chr8_1 five_prime_UTR 38619576 38619722 38619576 ID=Msa1192680-mRNA-1:five_prime_utr;Parent=Msa1192680-mRNA-1
chr8_1 CDS 38619723 38619795 38619723 ID=Msa1192680-mRNA-1:cds;Parent=Msa1192680-mRNA-1
chr8_1 CDS 38619982 38620654 38619982 ID=Msa1192680-mRNA-1:cds;Parent=Msa1192680-mRNA-1
chr8_1 CDS 38621548 38621728 38621548 ID=Msa1192680-mRNA-1:cds;Parent=Msa1192680-mRNA-1
chr8_1 three_prime_UTR 38621729 38621905 38621729 ID=Msa1192680-mRNA-1:three_prime_utr;Parent=Msa1192680-mRNA-1
Gene Sequence

>Msa1192680

ATGTCTATGTTCTCATATCACAAACATTCTTCTAACCGTTTCTTCATTTTCCTACTTATCCTAGCTTTCAAAGGAGTAACAATTTCAGCAACAACATTCACGTTCGTGAACAAATGTGATCACACAATATGGCCAGGAATTCTAGGAAAACCAGACCTCGGAACAACCGGTTTTGAACTCAAAAAAGGAAACACACAAACCTTCCAAGCACCAGCCGGTTGGTCAGGTAGATTCTGGGCAAGAACCGGTTGCAAATTCGACGATTCTGGCCACGGAACCTGCTCAACCGGAGACTGTGGTTCCGGGGAAATTAACTGCAACGGAAACGGCGCAACACCACCGGCAACATTAGCAGAATTCACTCTAGGAAATAGTTCGCCAGATTACTACGATGTTAGTCTTGTAGACGGTTACAATCTTCCGGTGATGGTTGAAACTAGTGGCGGTTCAGGTTCATGTCAGCCCACTGGATGTGGAGAGGATCTTAACCGGAGGTGTCCATCGGAGCTGAGAGTGGACGGTGGTGACGCGTGTAATAGCGCGTGTGGTGCCTTTGGGACACCGGAGTATTGTTGTAGTGGCGCGTTTGGTTCGCCATCGAGTTGTTCGCCTTCGGTTTATTCGGAAATGTTTAAATCCGCTTGTCCAAAATCTTATAGCTATGCGTATGATGATGCTACGAGTACTTTTACTTGTACTGCTGCGGATGATTATACTATCACATTTTGTCCTTCTTCTTCTCCAAGTTTGAAATCTTTAATGGAGTCAAAGCCAGGATCATCAGTAGAACAAGCTGCAGTAGCTACTAAATCTTGGATAGCAAATTTGGCCACAGGAGCTTCCACAAGAATAAGCCAACCATTTTCAACTTCCATGTCTATATTTTTTGTTGCTATCACTTTCATATTTTCATATTTAGTCAATTAG

Protein sequence

>Msa1192680

MSMFSYHKHSSNRFFIFLLILAFKGVTISATTFTFVNKCDHTIWPGILGKPDLGTTGFELKKGNTQTFQAPAGWSGRFWARTGCKFDDSGHGTCSTGDCGSGEINCNGNGATPPATLAEFTLGNSSPDYYDVSLVDGYNLPVMVETSGGSGSCQPTGCGEDLNRRCPSELRVDGGDACNSACGAFGTPEYCCSGAFGSPSSCSPSVYSEMFKSACPKSYSYAYDDATSTFTCTAADDYTITFCPSSSPSLKSLMESKPGSSVEQAAVATKSWIANLATGASTRISQPFSTSMSIFFVAITFIFSYLVN*