AlfalfaGEDB | Msa1192760

M. sativa cultivar zhongmu-4 / Msa1192760

KEGG: -
GO: -
PFAM: PF00314.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1192760	XP_003629298.1	99.026	308	3	0	1	308	1	308	0.0	622

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1192760	sp\|A0A1P8B554\|THLP1_ARATH	62.403	258	83	6	1	245	1	257	7.35e-106	312

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002110	Msa1192760	-0.811750	5.987386e-51	-8.615850e-47
Msa0002690	Msa1192760	-0.818909	1.532654e-52	-8.615850e-47
Msa0002700	Msa1192760	-0.808632	2.814861e-50	-8.615850e-47
Msa0003340	Msa1192760	-0.820440	6.851641e-53	-8.615850e-47
Msa0004180	Msa1192760	-0.838591	2.626156e-57	-8.615850e-47
Msa0007570	Msa1192760	-0.819714	1.004824e-52	-8.615850e-47
Msa0011010	Msa1192760	0.801893	7.263114e-49	-8.615850e-47
Msa0011060	Msa1192760	-0.808752	2.653767e-50	-8.615850e-47
Msa0011100	Msa1192760	-0.812753	3.618470e-51	-8.615850e-47
Msa0016380	Msa1192760	-0.840854	6.766187e-58	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1192760	MtrunA17_Chr8g0371771	99.026	308	3	0	1	308	1	308	0.0	622
Msa1192760	MtrunA17_Chr5g0405611	62.461	317	101	5	1	304	66	377	8.82e-141	402
Msa1192760	MtrunA17_Chr4g0037331	68.644	236	70	2	11	243	5	239	4.77e-116	338
Msa1192760	MtrunA17_Chr1g0156711	62.249	249	84	5	14	252	6	254	2.14e-100	297
Msa1192760	MtrunA17_Chr3g0142781	57.795	263	99	6	8	258	3	265	6.97e-97	288
Msa1192760	MtrunA17_Chr8g0352471	55.682	264	104	7	10	263	4	264	5.42e-93	278
Msa1192760	MtrunA17_Chr4g0037351	52.830	265	109	6	13	262	3	266	5.74e-88	266
Msa1192760	MtrunA17_Chr5g0405581	55.598	259	98	8	10	252	3	260	1.40e-87	264
Msa1192760	MtrunA17_Chr8g0371781	57.917	240	85	6	28	252	25	263	4.19e-87	263
Msa1192760	MtrunA17_Chr6g0482741	54.357	241	98	6	13	244	3	240	1.49e-86	259

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1192760	AT4G38660.1	52.286	350	115	7	1	305	2	344	1.61e-113	332
Msa1192760	AT4G38660.2	55.000	320	94	6	31	305	8	322	1.15e-111	327
Msa1192760	AT4G24180.1	57.191	299	111	8	1	284	1	297	4.78e-109	320
Msa1192760	AT4G24180.2	57.576	297	108	9	1	284	1	292	2.17e-108	318
Msa1192760	AT4G24180.6	62.403	258	83	6	1	245	1	257	7.47e-107	312
Msa1192760	AT4G24180.5	62.891	256	80	7	1	245	1	252	4.96e-106	310
Msa1192760	AT4G24180.3	60.166	241	83	5	1	228	1	241	2.30e-96	288
Msa1192760	AT4G24180.4	60.669	239	80	6	1	228	1	236	1.51e-95	285
Msa1192760	AT1G20030.2	60.417	240	83	4	28	255	17	256	7.74e-93	278
Msa1192760	AT1G20030.1	61.441	236	79	4	32	255	4	239	9.17e-93	278

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Find 108 sgRNAs with CRISPR-Local

Find 149 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCAGACCTCGGAACAAC+CGG	0.464546	8_1:-38694937	Msa1192760:CDS
AAACCGGTTGTTCCGAGGTC+TGG	0.386392	8_1:+38694934	None:intergenic
AAATGGTTGGCTTATTCTTG+TGG	0.566106	8_1:+38693355	None:intergenic
AAATTCGACGATTCTGGCCA+CGG	0.552629	8_1:-38694832	Msa1192760:CDS
AACATTTCCGAATAAACCGA+AGG	0.568030	8_1:+38694475	None:intergenic
AACCGGAGACTGTGGTTCCG+GGG	0.604183	8_1:-38694800	Msa1192760:CDS
AACTCTCTTTAGGAGTGAAT+TGG	0.379146	8_1:+38695372	None:intergenic
AAGATCCTCTCCACATCCAG+TGG	0.606360	8_1:+38694621	None:intergenic
AATAGCGCGTGTGGTGCCTT+TGG	0.406914	8_1:-38694550	Msa1192760:CDS
AATCTACCTGACCAACCGGC+TGG	0.593577	8_1:+38694874	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTACCTATACTATAATTGGT+TGG	-	chr8_1:38693228-38693247	Msa1192760:three_prime_UTR	30.0%
ACAAATGTGATCACACAATA+TGG	-	chr8_1:38693557-38693576	Msa1192760:intron	30.0%
TTAACCAACAACCTTTGATA+GGG	+	chr8_1:38694307-38694326	None:intergenic	30.0%
TTTAACCAACAACCTTTGAT+AGG	+	chr8_1:38694308-38694327	None:intergenic	30.0%
GTTGGTTAAACAAGTTGTTA+AGG	-	chr8_1:38694318-38694337	Msa1192760:intron	30.0%
CTTACAACTATCAAAATCCA+AGG	-	chr8_1:38694456-38694475	Msa1192760:CDS	30.0%
GAATGTTGTGATGAAAGATT+AGG	-	chr8_1:38694647-38694666	Msa1192760:CDS	30.0%
AGAAATTGAGTGTATGTCAT+TGG	-	chr8_1:38694760-38694779	Msa1192760:CDS	30.0%
ATAGACATGGAAGTTGAAAA+TGG	+	chr8_1:38695197-38695216	None:intergenic	30.0%
GATCAAACAACATAAGTAGT+TGG	-	chr8_1:38695334-38695353	Msa1192760:five_prime_UTR	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	38693115	38695439	38693115	ID=Msa1192760;Name=Msa1192760
chr8_1	mRNA	38693115	38695439	38693115	ID=Msa1192760-mRNA-1;Parent=Msa1192760;Name=Msa1192760-mRNA-1;_AED=0.04;_eAED=0.04;_QI=147\|1\|1\|1\|1\|1\|3\|177\|308
chr8_1	exon	38693115	38693472	38693115	ID=Msa1192760-mRNA-1:exon:12667;Parent=Msa1192760-mRNA-1
chr8_1	exon	38694361	38695033	38694361	ID=Msa1192760-mRNA-1:exon:12666;Parent=Msa1192760-mRNA-1
chr8_1	exon	38695220	38695439	38695220	ID=Msa1192760-mRNA-1:exon:12665;Parent=Msa1192760-mRNA-1
chr8_1	five_prime_UTR	38695293	38695439	38695293	ID=Msa1192760-mRNA-1:five_prime_utr;Parent=Msa1192760-mRNA-1
chr8_1	CDS	38695220	38695292	38695220	ID=Msa1192760-mRNA-1:cds;Parent=Msa1192760-mRNA-1
chr8_1	CDS	38694361	38695033	38694361	ID=Msa1192760-mRNA-1:cds;Parent=Msa1192760-mRNA-1
chr8_1	CDS	38693292	38693472	38693292	ID=Msa1192760-mRNA-1:cds;Parent=Msa1192760-mRNA-1
chr8_1	three_prime_UTR	38693115	38693291	38693115	ID=Msa1192760-mRNA-1:three_prime_utr;Parent=Msa1192760-mRNA-1

Gene Sequence

>Msa1192760

ATGTCTATGTTCTCATATCACAAACATTCTTCTAACCGTTTCTTCATTTTCCTACTTATCCTAGCTTTCAAAGGAGTAACAATTTCAGCAACAACATTCACGTTCGTGAACAAATGTGATCACACAATATGGCCAGGAATTCTAGGAAAACCAGACCTCGGAACAACCGGTTTTGAACTCAAAAAAGGAAACACACAAACCTTCCAAGCACCAGCCGGTTGGTCAGGTAGATTCTGGGCAAGAACCGGTTGCAAATTCGACGATTCTGGCCACGGAACCTGCTCAACCGGAGACTGTGGTTCCGGGGAAATTAACTGCAACGGAAACGGCGCAACACCACCGGCAACATTAGCAGAATTCACTCTAGGAAATAGTTCGCCAGATTACTACGATGTTAGTCTTGTAGACGGTTACAATCTTCCGGTGATGGTTGAAACTAGTGGCGGTTCAGGTTCATGTCAGCCCACTGGATGTGGAGAGGATCTTAACCGGAGGTGTCCATCGGAGCTGAGAGTGGACGGTGGTGACGCGTGTAATAGCGCGTGTGGTGCCTTTGGGACACCGGAGTATTGTTGTAGTGGCGCGTTTGGTTCGCCATCGAGTTGTTCGCCTTCGGTTTATTCGGAAATGTTTAAATCCGCTTGTCCAAAATCTTATAGCTATGCGTATGATGATGCTACGAGTACTTTTACTTGTACTGCTGCGGATGATTATACTATCACATTTTGTCCTTCTTCTTCTCCAAGTTTGAAATCTTTAATGGAGTCAAAGCCAGGATCATCAGTAGAACAAGCTGCAGTAGCTACTAAATCTTGGATAGCAAATTTGGCCACAGGAGCTTCCACAAGAATAAGCCAACCATTTTCAACTTCCATGTCTATATTTTTTGTTGCTATCACTTTCATATTTTCATATTTAGTCAATTAG

Protein sequence

>Msa1192760

MSMFSYHKHSSNRFFIFLLILAFKGVTISATTFTFVNKCDHTIWPGILGKPDLGTTGFELKKGNTQTFQAPAGWSGRFWARTGCKFDDSGHGTCSTGDCGSGEINCNGNGATPPATLAEFTLGNSSPDYYDVSLVDGYNLPVMVETSGGSGSCQPTGCGEDLNRRCPSELRVDGGDACNSACGAFGTPEYCCSGAFGSPSSCSPSVYSEMFKSACPKSYSYAYDDATSTFTCTAADDYTITFCPSSSPSLKSLMESKPGSSVEQAAVATKSWIANLATGASTRISQPFSTSMSIFFVAITFIFSYLVN*